AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913550 MtrunA17_Chr6g0467251 95.402 348 16 0 1 348 1 348 0.0 672
Msa0913550 MtrunA17_Chr6g0467121 55.556 351 146 3 1 344 33 380 7.04e-137 394
Msa0913550 MtrunA17_Chr6g0467161 53.271 321 149 1 10 330 19 338 5.00e-123 357
Msa0913550 MtrunA17_Chr2g0292151 42.368 321 170 7 36 343 29 347 2.46e-75 236
Msa0913550 MtrunA17_Chr2g0292241 41.853 313 169 6 36 337 29 339 1.83e-74 234
Msa0913550 MtrunA17_Chr1g0188431 41.869 289 164 2 36 324 39 323 8.13e-74 231
Msa0913550 MtrunA17_Chr4g0046131 40.181 331 181 7 9 324 14 342 7.58e-73 229
Msa0913550 MtrunA17_Chr2g0292211 40.426 329 178 7 31 343 35 361 8.42e-72 227
Msa0913550 MtrunA17_Chr3g0114451 38.854 314 188 4 13 324 3 314 2.43e-71 224
Msa0913550 MtrunA17_Chr7g0225221 38.318 321 185 5 8 324 5 316 6.81e-71 223
Msa0913550 MtrunA17_Chr7g0254231 41.522 289 166 2 36 324 22 307 2.09e-70 222
Msa0913550 MtrunA17_Chr2g0291751 42.765 311 163 8 36 334 29 336 2.12e-70 223
Msa0913550 MtrunA17_Chr2g0292091 42.000 300 161 6 36 324 24 321 1.67e-69 221
Msa0913550 MtrunA17_Chr3g0129051 38.253 332 191 5 1 328 1 322 2.76e-69 219
Msa0913550 MtrunA17_Chr4g0013201 39.528 339 185 7 1 324 1 334 8.67e-69 219
Msa0913550 MtrunA17_Chr2g0292111 40.968 310 170 6 36 334 29 336 1.15e-68 219
Msa0913550 MtrunA17_Chr7g0244461 39.863 291 171 4 36 324 20 308 1.78e-68 217
Msa0913550 MtrunA17_Chr4g0075241 37.931 319 183 7 19 324 7 323 2.04e-68 217
Msa0913550 MtrunA17_Chr2g0292261 40.125 319 178 6 36 343 29 345 5.83e-68 217
Msa0913550 MtrunA17_Chr4g0013191 43.537 294 151 7 40 324 49 336 8.77e-68 216
Msa0913550 MtrunA17_Chr1g0197411 39.604 303 165 7 36 324 28 326 1.51e-67 215
Msa0913550 MtrunA17_Chr1g0194151 38.138 333 182 8 9 328 12 333 2.16e-67 215
Msa0913550 MtrunA17_Chr2g0292251 39.130 322 178 7 36 341 28 347 2.18e-67 216
Msa0913550 MtrunA17_Chr5g0438021 36.280 328 196 5 5 328 7 325 3.97e-67 214
Msa0913550 MtrunA17_Chr6g0477071 38.095 294 170 3 35 324 53 338 3.98e-67 214
Msa0913550 MtrunA17_Chr2g0292181 38.019 313 181 6 36 337 38 348 7.77e-67 214
Msa0913550 MtrunA17_Chr5g0404721 39.130 299 172 5 40 329 34 331 8.80e-67 213
Msa0913550 MtrunA17_Chr2g0292101 39.677 310 176 5 36 335 25 333 1.06e-66 213
Msa0913550 MtrunA17_Chr5g0402581 39.803 304 172 4 30 324 21 322 1.09e-66 213
Msa0913550 MtrunA17_Chr1g0175561 39.610 308 168 8 31 324 19 322 1.59e-66 213
Msa0913550 MtrunA17_Chr2g0292291 42.525 301 159 6 36 324 30 328 2.24e-66 213
Msa0913550 MtrunA17_Chr8g0364291 37.542 301 177 4 39 329 26 325 3.71e-66 211
Msa0913550 MtrunA17_Chr5g0400331 39.672 305 165 7 36 324 26 327 4.80e-66 211
Msa0913550 MtrunA17_Chr5g0405991 38.796 299 168 6 34 324 21 312 1.46e-65 209
Msa0913550 MtrunA17_Chr2g0292271 40.635 315 172 7 36 338 29 340 2.02e-65 210
Msa0913550 MtrunA17_Chr4g0024121 34.441 331 199 6 3 324 1 322 3.40e-65 209
Msa0913550 MtrunA17_Chr4g0072091 40.594 303 167 5 36 328 24 323 5.28e-65 208
Msa0913550 MtrunA17_Chr2g0320071 39.236 288 171 4 39 324 28 313 8.47e-65 207
Msa0913550 MtrunA17_Chr8g0371381 39.731 297 164 6 36 324 26 315 9.88e-65 207
Msa0913550 MtrunA17_Chr4g0053871 39.456 294 173 4 36 324 27 320 1.10e-64 207
Msa0913550 MtrunA17_Chr4g0068621 38.138 333 187 8 9 324 2 332 1.25e-64 208
Msa0913550 MtrunA17_Chr2g0279041 39.542 306 169 5 34 328 25 325 1.34e-64 207
Msa0913550 MtrunA17_Chr1g0148021 37.771 323 189 6 12 324 4 324 2.46e-64 207
Msa0913550 MtrunA17_Chr5g0402571 38.636 308 178 4 30 328 21 326 2.56e-64 207
Msa0913550 MtrunA17_Chr1g0164891 37.838 296 173 4 40 324 93 388 3.59e-64 208
Msa0913550 MtrunA17_Chr7g0244451 39.322 295 175 4 36 328 24 316 8.30e-64 205
Msa0913550 MtrunA17_Chr2g0320101 38.889 288 172 4 39 324 28 313 2.22e-63 204
Msa0913550 MtrunA17_Chr1g0194271 37.059 340 183 7 9 328 12 340 2.44e-63 205
Msa0913550 MtrunA17_Chr3g0129061 37.425 334 191 6 1 328 1 322 3.50e-63 204
Msa0913550 MtrunA17_Chr3g0128061 38.127 299 173 5 36 324 26 322 5.81e-63 203
Msa0913550 MtrunA17_Chr5g0432441 38.176 296 173 5 36 324 30 322 1.42e-62 202
Msa0913550 MtrunA17_Chr4g0013171 38.047 297 178 5 36 328 27 321 4.88e-62 201
Msa0913550 MtrunA17_Chr2g0320091 38.408 289 173 4 39 324 28 314 1.11e-61 200
Msa0913550 MtrunA17_Chr8g0372601 37.838 296 170 6 40 324 34 326 1.21e-61 200
Msa0913550 MtrunA17_Chr6g0460711 36.721 305 182 4 30 328 15 314 2.16e-61 199
Msa0913550 MtrunA17_Chr4g0013721 37.000 300 175 7 40 330 104 398 3.69e-61 201
Msa0913550 MtrunA17_Chr3g0106921 38.435 294 174 4 36 324 25 316 4.38e-61 198
Msa0913550 MtrunA17_Chr7g0268501 35.494 324 191 9 14 328 6 320 5.14e-61 198
Msa0913550 MtrunA17_Chr7g0268521 35.494 324 191 9 14 328 6 320 5.14e-61 198
Msa0913550 MtrunA17_Chr5g0401431 35.604 323 197 5 12 324 4 325 5.90e-61 198
Msa0913550 MtrunA17_Chr3g0136751 36.119 335 191 6 4 328 1 322 7.05e-61 198
Msa0913550 MtrunA17_Chr7g0254201 37.908 306 180 5 30 330 14 314 9.57e-61 197
Msa0913550 MtrunA17_Chr4g0038151 38.538 301 173 5 36 328 25 321 1.33e-60 197
Msa0913550 MtrunA17_Chr4g0013821 36.275 306 181 7 40 336 32 332 1.40e-60 197
Msa0913550 MtrunA17_Chr2g0299691 37.963 324 181 8 14 324 38 354 1.87e-60 198
Msa0913550 MtrunA17_Chr1g0155611 39.667 300 170 5 35 324 45 343 1.95e-60 197
Msa0913550 MtrunA17_Chr4g0038161 39.203 301 171 5 36 328 24 320 3.15e-60 196
Msa0913550 MtrunA17_Chr2g0296621 36.824 296 172 6 36 324 50 337 3.79e-60 196
Msa0913550 MtrunA17_Chr1g0181431 33.445 299 191 4 32 324 23 319 4.54e-60 196
Msa0913550 MtrunA17_Chr2g0322861 36.184 304 181 7 36 329 87 387 5.18e-60 197
Msa0913550 MtrunA17_Chr4g0070951 38.206 301 171 6 36 324 28 325 5.74e-60 196
Msa0913550 MtrunA17_Chr1g0157051 35.826 321 187 6 12 324 5 314 6.66e-60 195
Msa0913550 MtrunA17_Chr1g0213061 37.884 293 176 5 36 324 27 317 8.71e-60 195
Msa0913550 MtrunA17_Chr4g0063671 39.203 301 166 5 36 324 21 316 9.81e-60 195
Msa0913550 MtrunA17_Chr3g0106901 37.421 318 184 6 10 324 14 319 1.00e-59 195
Msa0913550 MtrunA17_Chr2g0320061 37.370 289 176 5 39 324 28 314 1.59e-59 194
Msa0913550 MtrunA17_Chr3g0129041 37.126 334 192 7 1 328 1 322 3.37e-59 193
Msa0913550 MtrunA17_Chr7g0258811 36.392 316 167 8 31 324 64 367 3.86e-59 195
Msa0913550 MtrunA17_Chr4g0038171 39.803 304 166 7 36 328 24 321 1.74e-58 191
Msa0913550 MtrunA17_Chr4g0074851 34.106 302 191 4 35 330 31 330 4.14e-58 191
Msa0913550 MtrunA17_Chr4g0043391 37.982 337 185 9 3 328 1 324 6.70e-58 190
Msa0913550 MtrunA17_Chr4g0076211 38.144 291 166 5 41 324 46 329 1.14e-57 190
Msa0913550 MtrunA17_Chr2g0320051 37.716 289 175 5 39 324 28 314 1.24e-57 189
Msa0913550 MtrunA17_Chr1g0181481 32.881 295 190 4 36 324 27 319 1.11e-56 187
Msa0913550 MtrunA17_Chr2g0320031 36.644 292 180 5 36 324 26 315 1.65e-56 186
Msa0913550 MtrunA17_Chr7g0224371 35.315 286 182 3 40 324 35 318 4.23e-56 185
Msa0913550 MtrunA17_Chr6g0451571 35.570 298 182 5 36 324 34 330 5.74e-56 185
Msa0913550 MtrunA17_Chr1g0204011 34.139 331 198 5 1 324 1 318 2.58e-55 183
Msa0913550 MtrunA17_Chr2g0329641 34.743 331 198 6 10 328 11 335 6.61e-55 182
Msa0913550 MtrunA17_Chr2g0316481 34.954 329 172 6 36 324 76 402 1.04e-54 184
Msa0913550 MtrunA17_Chr1g0181511 33.108 296 188 5 36 324 27 319 1.12e-54 182
Msa0913550 MtrunA17_Chr2g0316191 35.030 334 166 8 36 324 76 403 5.31e-54 182
Msa0913550 MtrunA17_Chr2g0316791 34.954 329 172 6 36 324 76 402 1.14e-53 181
Msa0913550 MtrunA17_Chr4g0013181 35.374 294 184 5 39 328 62 353 1.18e-53 180
Msa0913550 MtrunA17_Chr2g0316831 34.954 329 172 6 36 324 112 438 2.26e-53 182
Msa0913550 MtrunA17_Chr5g0421411 38.745 271 152 7 67 324 12 281 1.79e-51 172
Msa0913550 MtrunA17_Chr5g0432351 34.462 325 196 8 7 324 3 317 6.37e-51 172
Msa0913550 MtrunA17_Chr2g0311251 34.731 334 165 10 36 324 11 336 4.97e-50 170
Msa0913550 MtrunA17_Chr3g0107881 36.391 327 179 12 11 324 10 320 1.15e-49 169
Msa0913550 MtrunA17_Chr2g0311241 31.892 370 168 7 36 324 60 426 6.70e-49 169
Msa0913550 MtrunA17_Chr5g0432341 34.154 325 197 8 7 324 3 317 7.28e-49 167
Msa0913550 MtrunA17_Chr2g0279061 38.996 259 142 5 81 328 13 266 3.55e-47 160
Msa0913550 MtrunA17_Chr5g0432331 33.887 301 189 7 31 324 51 348 1.63e-45 159
Msa0913550 MtrunA17_Chr2g0278671 33.882 304 186 5 36 328 24 323 4.68e-45 157
Msa0913550 MtrunA17_Chr5g0413051 32.899 307 190 7 36 328 73 377 1.83e-44 156
Msa0913550 MtrunA17_Chr5g0423911 89.333 75 8 0 258 332 1 75 1.30e-40 138
Msa0913550 MtrunA17_Chr4g0004591 32.704 318 143 7 36 324 77 352 4.82e-39 142
Msa0913550 MtrunA17_Chr2g0292281 39.024 205 107 5 129 324 17 212 1.78e-37 134
Msa0913550 MtrunA17_Chr3g0114461 39.459 185 108 4 147 328 9 192 1.79e-35 127
Msa0913550 MtrunA17_Chr2g0316811 35.776 232 123 5 36 243 50 279 9.74e-33 124
Msa0913550 MtrunA17_Chr5g0432401 30.887 327 161 14 10 324 9 282 2.18e-31 119
Msa0913550 MtrunA17_Chr2g0316141 30.216 278 145 6 82 324 11 274 3.26e-27 108
Msa0913550 MtrunA17_Chr2g0316181 30.216 278 145 6 82 324 11 274 3.26e-27 108
Msa0913550 MtrunA17_Chr1g0181501 33.696 184 115 4 147 324 3 185 6.31e-26 102
Msa0913550 MtrunA17_Chr3g0114491 40.650 123 71 2 22 144 5 125 9.69e-23 92.4
Msa0913550 MtrunA17_Chr1g0181491 34.862 109 68 2 36 144 12 117 1.57e-17 78.6
Msa0913550 MtrunA17_Chr2g0316771 26.257 179 95 2 183 324 4 182 5.89e-15 72.4
Msa0913550 MtrunA17_Chr7g0268491 40.449 89 52 1 236 324 6 93 1.30e-13 66.2
Msa0913550 MtrunA17_Chr5g0432321 36.752 117 72 2 158 273 17 132 1.98e-12 63.9
Msa0913550 MtrunA17_Chr7g0254181 39.048 105 60 2 98 202 22 122 3.83e-12 63.5
Msa0913550 MtrunA17_Chr3g0104101 33.577 137 79 5 200 324 9 145 1.32e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913550 AT1G71695.1 45.897 329 173 3 23 348 31 357 1.27e-101 304
Msa0913550 AT4G33420.1 40.575 313 182 2 16 328 17 325 1.00e-74 234
Msa0913550 AT4G33420.2 40.575 313 182 2 16 328 64 372 3.46e-74 234
Msa0913550 AT4G08770.1 41.433 321 174 7 40 348 28 346 2.31e-73 231
Msa0913550 AT5G14130.1 37.846 325 185 4 11 328 16 330 8.99e-72 226
Msa0913550 AT4G08780.1 41.121 321 175 7 40 348 28 346 2.60e-71 226
Msa0913550 AT5G14130.2 37.846 325 185 4 11 328 57 371 2.64e-71 226
Msa0913550 AT5G64120.1 39.403 335 189 7 1 328 1 328 3.37e-71 225
Msa0913550 AT4G37520.1 40.000 305 169 5 36 328 27 329 1.23e-70 223
Msa0913550 AT4G37520.2 39.672 305 167 6 36 328 27 326 1.11e-68 218
Msa0913550 AT5G06730.1 36.364 341 204 6 4 334 3 340 2.38e-68 218
Msa0913550 AT2G18980.1 41.806 299 160 6 36 324 25 319 3.73e-68 217
Msa0913550 AT4G37530.1 38.614 303 176 4 36 328 27 329 8.57e-68 216
Msa0913550 AT3G32980.1 39.748 317 173 7 40 344 35 345 8.96e-68 217
Msa0913550 AT5G19880.1 40.328 305 162 6 36 324 25 325 1.15e-67 216
Msa0913550 AT5G15180.1 36.446 332 196 7 1 324 1 325 6.48e-67 214
Msa0913550 AT5G58400.1 38.298 329 188 6 5 328 7 325 2.03e-66 213
Msa0913550 AT3G49120.1 39.117 317 175 7 40 344 36 346 3.44e-66 213
Msa0913550 AT3G49110.1 39.117 317 175 7 40 344 37 347 9.51e-66 212
Msa0913550 AT2G38390.1 41.254 303 166 7 39 330 34 335 9.61e-66 211
Msa0913550 AT3G03670.1 37.459 307 182 4 30 328 17 321 1.04e-65 211
Msa0913550 AT5G06720.1 36.137 321 191 6 14 324 13 329 4.34e-65 209
Msa0913550 AT3G28200.1 37.710 297 180 3 36 328 21 316 7.71e-65 208
Msa0913550 AT3G50990.1 37.171 304 177 7 32 324 37 337 1.14e-64 209
Msa0913550 AT5G40150.1 38.047 297 180 3 36 328 32 328 1.17e-64 208
Msa0913550 AT2G18140.1 37.377 305 181 5 34 329 33 336 1.56e-64 208
Msa0913550 AT2G24800.1 38.361 305 170 7 36 328 31 329 1.70e-64 207
Msa0913550 AT2G22420.1 38.206 301 170 8 40 330 27 321 3.57e-64 207
Msa0913550 AT2G18150.1 36.789 299 179 5 40 329 40 337 3.92e-64 207
Msa0913550 AT5G19890.1 39.542 306 166 7 36 329 30 328 4.21e-64 206
Msa0913550 AT4G16270.1 40.803 299 163 8 36 324 50 344 5.18e-64 207
Msa0913550 AT4G30170.1 39.130 299 168 5 36 324 27 321 5.63e-64 206
Msa0913550 AT1G49570.1 40.264 303 169 5 36 327 48 349 8.78e-64 206
Msa0913550 AT2G38380.1 38.576 337 189 8 5 330 6 335 1.31e-63 206
Msa0913550 AT4G36430.1 37.075 294 175 5 40 324 34 326 1.40e-63 205
Msa0913550 AT3G01190.1 34.639 332 199 6 4 328 1 321 3.55e-63 204
Msa0913550 AT3G17070.1 37.209 301 176 5 35 324 37 335 5.53e-63 204
Msa0913550 AT5G05340.1 37.793 299 176 5 36 328 30 324 1.84e-62 202
Msa0913550 AT1G24110.1 36.890 328 193 6 13 331 3 325 2.36e-62 202
Msa0913550 AT1G44970.1 40.468 299 167 5 40 328 49 346 7.82e-62 201
Msa0913550 AT2G34060.1 35.673 342 202 8 1 324 1 342 8.43e-62 201
Msa0913550 AT5G67400.1 37.624 303 179 4 36 328 27 329 1.12e-61 200
Msa0913550 AT5G66390.1 37.838 296 170 6 40 324 37 329 1.15e-61 201
Msa0913550 AT5G17820.1 38.206 301 171 5 30 324 18 309 1.46e-61 199
Msa0913550 AT2G41480.1 38.538 301 168 5 40 328 33 328 1.65e-61 200
Msa0913550 AT3G49960.1 38.284 303 177 5 36 328 27 329 1.97e-61 200
Msa0913550 AT5G39580.1 39.344 305 167 7 34 328 23 319 2.89e-61 199
Msa0913550 AT2G35380.1 37.059 340 187 9 3 324 1 331 7.21e-61 198
Msa0913550 AT5G42180.1 36.333 300 177 5 33 324 20 313 8.71e-61 197
Msa0913550 AT5G51890.1 35.604 323 189 5 7 321 4 315 1.15e-60 197
Msa0913550 AT1G14550.1 36.760 321 190 6 9 324 5 317 1.45e-60 197
Msa0913550 AT5G17820.2 38.206 301 171 5 30 324 71 362 2.77e-60 198
Msa0913550 AT1G14540.1 36.986 292 180 4 40 328 25 315 3.02e-60 196
Msa0913550 AT4G17690.1 37.874 301 180 4 28 324 21 318 6.37e-60 196
Msa0913550 AT5G58390.1 36.250 320 189 6 15 328 6 316 1.15e-59 195
Msa0913550 AT1G30870.1 38.889 306 167 8 36 330 51 347 1.70e-59 195
Msa0913550 AT4G26010.1 37.624 303 178 6 30 329 16 310 3.75e-59 193
Msa0913550 AT1G05240.1 36.634 303 179 6 36 328 26 325 3.95e-59 194
Msa0913550 AT1G05250.1 36.634 303 179 6 36 328 26 325 3.95e-59 194
Msa0913550 AT5G47000.1 37.037 324 191 5 12 329 15 331 4.70e-59 194
Msa0913550 AT4G26010.2 37.624 303 178 6 30 329 44 338 5.18e-59 194
Msa0913550 AT4G21960.1 34.154 325 204 5 10 328 7 327 5.99e-59 193
Msa0913550 AT2G39040.1 37.829 304 171 10 36 324 46 346 1.70e-58 193
Msa0913550 AT4G11290.1 35.216 301 180 8 36 324 25 322 1.96e-58 192
Msa0913550 AT3G21770.1 34.437 302 179 8 36 324 29 324 6.01e-58 191
Msa0913550 AT1G05260.1 32.024 331 203 8 9 329 8 326 1.63e-57 189
Msa0913550 AT5G24070.1 34.513 339 195 8 11 328 3 335 3.61e-57 189
Msa0913550 AT1G68850.1 34.441 331 201 7 8 324 3 331 7.47e-57 188
Msa0913550 AT4G37530.2 39.919 248 139 4 39 276 30 277 2.21e-56 185
Msa0913550 AT4G31760.1 35.738 305 177 5 36 328 29 326 5.93e-56 186
Msa0913550 AT2G37130.1 33.108 296 189 6 36 324 30 323 4.74e-55 183
Msa0913550 AT2G37130.2 33.106 293 187 6 39 324 2 292 9.89e-55 181
Msa0913550 AT1G77100.1 36.455 299 181 5 36 328 24 319 3.80e-54 181
Msa0913550 AT4G33870.1 33.735 332 175 6 36 324 68 397 7.33e-54 182
Msa0913550 AT5G64110.1 37.458 299 171 6 40 328 38 330 2.83e-53 179
Msa0913550 AT5G22410.1 35.294 306 179 9 36 329 28 326 3.91e-52 176
Msa0913550 AT5G64100.1 36.242 298 174 6 40 328 41 331 2.62e-51 174
Msa0913550 AT2G43480.1 31.132 318 195 6 23 324 22 331 1.48e-50 172
Msa0913550 AT1G34510.1 34.539 304 186 7 30 329 16 310 5.09e-50 169
Msa0913550 AT4G25980.1 32.787 305 189 5 36 328 26 326 8.92e-47 162
Msa0913550 AT3G17070.2 35.827 254 150 5 82 324 21 272 1.30e-45 157
Msa0913550 AT2G35380.2 37.959 245 129 8 98 324 4 243 4.99e-43 149
Msa0913550 AT2G24800.2 38.596 171 99 3 36 205 31 196 8.06e-32 120
Msa0913550 AT5G39580.2 37.838 185 104 4 34 215 23 199 2.27e-30 116
Msa0913550 AT4G25980.2 35.882 170 105 2 36 205 71 236 2.15e-27 109
Msa0913550 AT4G35000.1 30.677 251 128 11 67 310 31 242 4.37e-17 80.9
Msa0913550 AT4G32320.1 27.953 254 126 7 65 307 112 319 2.22e-14 73.6
Msa0913550 AT3G42570.1 34.314 102 63 3 104 203 50 149 2.97e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTAGATTTCCTATTATT+TGG 0.128939 6_2:-24481436 None:intergenic
TCGAGTTGTTTCTTGAAATT+TGG 0.165142 6_2:-24481133 None:intergenic
ATCCCTGAACGCCATTAATT+TGG 0.170957 6_2:+24481177 Msa0913550:CDS
CTATCTGGTGCCCACACTTT+TGG 0.251851 6_2:+24481052 Msa0913550:CDS
CCCAATGGCACGTCAAAATC+TGG 0.255614 6_2:-24480905 None:intergenic
CTGCATTTACACTGAAGTTT+AGG 0.301903 6_2:-24480940 None:intergenic
TTCACAATCTCCTTAGTCTT+AGG 0.327909 6_2:-24481295 None:intergenic
TGTTCGAAGATCCAAATTAA+TGG 0.329537 6_2:-24481188 None:intergenic
GCGTTCAGGGATTCCTCATT+TGG 0.349674 6_2:-24481166 None:intergenic
CTTACAATCCTTTCAATCCT+AGG 0.351971 6_2:-24478570 None:intergenic
GATCCAAATTAATGGCGTTC+AGG 0.357808 6_2:-24481180 None:intergenic
TCCAAATAATAGGAAATCTA+AGG 0.367020 6_2:+24481435 Msa0913550:CDS
ATGATTCGGTTGAACATTGT+TGG 0.380602 6_2:-24481088 None:intergenic
ACCGATGTAGTTGCTCTATC+TGG 0.387253 6_2:+24481037 Msa0913550:CDS
CTTGAATTTGTACAGTTTGG+AGG 0.394165 6_2:+24480881 Msa0913550:intron
TCTGTTCGTGCAAATGGTAC+TGG 0.412087 6_2:-24480974 None:intergenic
AGTTCATCTGTTCGTGCAAA+TGG 0.412175 6_2:-24480980 None:intergenic
TTGAAATTTGGTTCGATTGG+TGG 0.414542 6_2:-24481121 None:intergenic
TTTATTGGTTGTCATGTCCT+AGG 0.416911 6_2:+24478553 Msa0913550:CDS
TACATATTATCGAATGTGTT+TGG 0.420413 6_2:-24481211 None:intergenic
ATCCAAATTAATGGCGTTCA+GGG 0.443471 6_2:-24481179 None:intergenic
GTGGGTCGGATTCAATGATT+CGG 0.450356 6_2:-24481102 None:intergenic
TTCTTGAAATTTGGTTCGAT+TGG 0.452274 6_2:-24481124 None:intergenic
TGAAATTTGGTTCGATTGGT+GGG 0.456433 6_2:-24481120 None:intergenic
GGCAAGTCATCCTAAGACTA+AGG 0.457751 6_2:+24481285 Msa0913550:CDS
TGGTGCCAACTTCGCTTTGA+GGG 0.458451 6_2:+24479558 Msa0913550:CDS
CTCCTCCCTCAAAGCGAAGT+TGG 0.472035 6_2:-24479563 None:intergenic
CTAGGATTGAAAGGATTGTA+AGG 0.474721 6_2:+24478571 Msa0913550:CDS
CAACTCGTGGACATTGCTTA+CGG 0.486794 6_2:-24479621 None:intergenic
ATTTGGTTCGATTGGTGGGT+CGG 0.494826 6_2:-24481116 None:intergenic
ATACCTGGGAAAAGCAATCA+TGG 0.501223 6_2:-24478659 None:intergenic
CCAATGGCACGTCAAAATCT+GGG 0.508698 6_2:-24480904 None:intergenic
CTGTTCGTGCAAATGGTACT+GGG 0.511334 6_2:-24480973 None:intergenic
AAGGATAGTGGTCAAGCTCC+TGG 0.512801 6_2:+24478618 Msa0913550:CDS
AGCAAGGCCTCCTGCTGTGA+GGG 0.513672 6_2:+24478515 Msa0913550:CDS
CAACTTCGCTTTGAGGGAGG+AGG 0.515979 6_2:+24479564 Msa0913550:CDS
CATTAACCTCTTGAATCACC+AGG 0.518011 6_2:+24481237 Msa0913550:CDS
TAGTCTAGTCCCCTCACAGC+AGG 0.532120 6_2:-24478525 None:intergenic
CTAAACTTCAGTGTAAATGC+AGG 0.534350 6_2:+24480941 Msa0913550:CDS
GAAATCTAAGGTGGCATCTG+TGG 0.537357 6_2:+24481447 Msa0913550:CDS
CGAAGCAACATGTCCAAATG+AGG 0.538386 6_2:+24481153 Msa0913550:CDS
CTTTCTGGTTAGAAGCAAAG+AGG 0.545522 6_2:-24481318 None:intergenic
GTTTACATCGGATCAAGACT+TGG 0.546163 6_2:+24481264 Msa0913550:CDS
TGTCATGTCCTAGGATTGAA+AGG 0.547029 6_2:+24478562 Msa0913550:CDS
CTACTCTCTCAGAGGAAACA+AGG 0.549748 6_2:-24478494 None:intergenic
ATCTAAGGTGGCATCTGTGG+TGG 0.560592 6_2:+24481450 Msa0913550:CDS
ATGGTGCCAACTTCGCTTTG+AGG 0.568649 6_2:+24479557 Msa0913550:CDS
TCTGCGCACGAGACAACTCG+TGG 0.586025 6_2:-24479634 None:intergenic
GGCATCTGTGGTGGAAGACG+TGG 0.593321 6_2:+24481459 Msa0913550:CDS
AATGAGCTTGACCAAAAGTG+TGG 0.611586 6_2:-24481063 None:intergenic
TGCCAACTTCGCTTTGAGGG+AGG 0.613739 6_2:+24479561 Msa0913550:CDS
CTTCACGTGCAGCGATGACG+AGG 0.614268 6_2:-24479660 None:intergenic
GCAAGGCCTCCTGCTGTGAG+GGG 0.634072 6_2:+24478516 Msa0913550:CDS
TCTAGTCCCCTCACAGCAGG+AGG 0.636097 6_2:-24478522 None:intergenic
AAATAATAGGAAATCTAAGG+TGG 0.648910 6_2:+24481438 Msa0913550:CDS
TAGCAAGGCCTCCTGCTGTG+AGG 0.654852 6_2:+24478514 Msa0913550:CDS
ATGAGCTTGACCAAAAGTGT+GGG 0.655019 6_2:-24481062 None:intergenic
ACACACCCTGGTGATTCAAG+AGG 0.659078 6_2:-24481243 None:intergenic
TCACCAGGGTGTGTTTACAT+CGG 0.667869 6_2:+24481252 Msa0913550:CDS
GATCCGATGTAAACACACCC+TGG 0.671264 6_2:-24481255 None:intergenic
ACCAGATAGAGCAACTACAT+CGG 0.673269 6_2:-24481038 None:intergenic
TTTCCTCTGAGAGAGTAGCA+AGG 0.674398 6_2:+24478499 Msa0913550:CDS
ATCTGTGGTGGAAGACGTGG+TGG 0.683712 6_2:+24481462 Msa0913550:CDS
AGGCCTTGCTACTCTCTCAG+AGG 0.695047 6_2:-24478502 None:intergenic
ATTAACCTCTTGAATCACCA+GGG 0.706268 6_2:+24481238 Msa0913550:CDS
GCTTACGGATTATAGCACGA+AGG 0.709375 6_2:-24479606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAGAAAAAAAAAAATTAA+AGG - chr6_2:24479250-24479269 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+AGG + chr6_2:24480169-24480188 Msa0913550:intron 10.0%
!! AGAAAAATGTATAAATAAAA+GGG + chr6_2:24480170-24480189 Msa0913550:intron 10.0%
!! CATTAAATAATTTATGTATT+TGG - chr6_2:24480600-24480619 None:intergenic 10.0%
!! AATTCATTACTTATTGAAAA+TGG - chr6_2:24478779-24478798 None:intergenic 15.0%
!!! ATAATGATTTTAATAGTAAC+TGG + chr6_2:24478807-24478826 Msa0913550:intron 15.0%
!! TGTTGTTCTTTATTATTAAT+AGG - chr6_2:24479196-24479215 None:intergenic 15.0%
!! AAATATGCATGAAAATAAAT+GGG - chr6_2:24479291-24479310 None:intergenic 15.0%
!! AAAATATGCATGAAAATAAA+TGG - chr6_2:24479292-24479311 None:intergenic 15.0%
!! TGTAAATAAAAAGATTGTAT+AGG - chr6_2:24479403-24479422 None:intergenic 15.0%
!!! CAACGTATAATTTTTTTTAA+TGG - chr6_2:24479457-24479476 None:intergenic 15.0%
!!! TATTAATTCGAGTTATAAAA+GGG + chr6_2:24480230-24480249 Msa0913550:intron 15.0%
!!! ATAATTTATGTATTTGGTTT+AGG - chr6_2:24480594-24480613 None:intergenic 15.0%
!! TAAAATTATTTACACTGATA+GGG + chr6_2:24480708-24480727 Msa0913550:intron 15.0%
!!! AAACCATACTTTCTTTTTTA+TGG + chr6_2:24478705-24478724 Msa0913550:intron 20.0%
!! TAAAACTTATTAGAAGTAAG+AGG + chr6_2:24478851-24478870 Msa0913550:intron 20.0%
!! TTCAAAACCATTTAACAAAA+CGG - chr6_2:24478912-24478931 None:intergenic 20.0%
!! AAAATCGTATAACAAAAGAA+TGG + chr6_2:24478930-24478949 Msa0913550:intron 20.0%
!!! GTGGATTTATATTTTTTAAG+AGG + chr6_2:24478973-24478992 Msa0913550:intron 20.0%
!! TATTATTAATAGGCTTAACT+GGG - chr6_2:24479186-24479205 None:intergenic 20.0%
!! TTATTATTAATAGGCTTAAC+TGG - chr6_2:24479187-24479206 None:intergenic 20.0%
!!! ATTATACGTTGCTTTTTTTT+TGG + chr6_2:24479466-24479485 Msa0913550:intron 20.0%
!!! TTTTTTTTTGGATTGAAACA+GGG + chr6_2:24479478-24479497 Msa0913550:intron 20.0%
!! ATATATATGACAATTGTAGT+TGG + chr6_2:24479761-24479780 Msa0913550:intron 20.0%
!! TTAACCAAAAAAAAAGATCA+AGG - chr6_2:24479880-24479899 None:intergenic 20.0%
!! TAATGTTACCATATTATGTT+AGG + chr6_2:24479994-24480013 Msa0913550:intron 20.0%
!!! GTATTAATTCGAGTTATAAA+AGG + chr6_2:24480229-24480248 Msa0913550:intron 20.0%
!! TTATAAAATATTACTTCCTC+CGG + chr6_2:24480504-24480523 Msa0913550:intron 20.0%
!! GTAAAATTATTTACACTGAT+AGG + chr6_2:24480707-24480726 Msa0913550:intron 20.0%
!!! TGTCTTATTTTCACTTTATA+CGG + chr6_2:24480733-24480752 Msa0913550:intron 20.0%
!!! TCAACATATTGTTTTAGTTA+AGG - chr6_2:24480774-24480793 None:intergenic 20.0%
!!! ATATGCTTAATTGCATTTTT+AGG - chr6_2:24480798-24480817 None:intergenic 20.0%
!!! AACATCATTCATACTTTTTT+TGG + chr6_2:24480826-24480845 Msa0913550:intron 20.0%
!!! ATTTGTTAAAAAACTCTTTC+TGG - chr6_2:24481336-24481355 None:intergenic 20.0%
!! GACTAGACTATGATTTTTAT+TGG + chr6_2:24478538-24478557 Msa0913550:CDS 25.0%
!!! TCTTGAAGATGTTTTTGAAA+AGG + chr6_2:24478599-24478618 Msa0913550:CDS 25.0%
! TCTTAATTCAATTCATACCT+GGG - chr6_2:24478676-24478695 None:intergenic 25.0%
! ATCTTAATTCAATTCATACC+TGG - chr6_2:24478677-24478696 None:intergenic 25.0%
! TCAAAACCATTTAACAAAAC+GGG - chr6_2:24478911-24478930 None:intergenic 25.0%
!!! GGACTTTTTTTATGATATGT+TGG - chr6_2:24479061-24479080 None:intergenic 25.0%
! AAATATGTTGTGACTAATCT+TGG - chr6_2:24479082-24479101 None:intergenic 25.0%
!! GTTATAAAAGTTTGACTTCA+AGG - chr6_2:24479354-24479373 None:intergenic 25.0%
!!! CTTTTTTTTTGGATTGAAAC+AGG + chr6_2:24479477-24479496 Msa0913550:intron 25.0%
!!! ATTTTGTTGAATGGTGTTAA+CGG + chr6_2:24479514-24479533 Msa0913550:CDS 25.0%
! AGCACATAAATGAAATTACT+TGG - chr6_2:24479693-24479712 None:intergenic 25.0%
!!! TGAACCTTGATCTTTTTTTT+TGG + chr6_2:24479873-24479892 Msa0913550:intron 25.0%
! CTTTGCGATTAAAATAATTG+AGG - chr6_2:24479921-24479940 None:intergenic 25.0%
! TATCTACTCCTAACATAATA+TGG - chr6_2:24480005-24480024 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr6_2:24480301-24480320 Msa0913550:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr6_2:24480302-24480321 Msa0913550:intron 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + chr6_2:24480323-24480342 Msa0913550:intron 25.0%
! GTAAATTGTCTCTTGTAAAT+AGG + chr6_2:24480630-24480649 Msa0913550:intron 25.0%
! AATAAAATAAATACTCCCTC+CGG - chr6_2:24480657-24480676 None:intergenic 25.0%
!!! GAATTTTTTTGATCCGAAAA+CGG - chr6_2:24481011-24481030 None:intergenic 25.0%
! TACATATTATCGAATGTGTT+TGG - chr6_2:24481214-24481233 None:intergenic 25.0%
!!! ATTTGCTAATGCTTTTGTTA+AGG + chr6_2:24481354-24481373 Msa0913550:CDS 25.0%
!!! TTTTGTTAAGGTTAGTCAAT+TGG + chr6_2:24481366-24481385 Msa0913550:CDS 25.0%
! TCCAAATAATAGGAAATCTA+AGG + chr6_2:24481435-24481454 Msa0913550:CDS 25.0%
! ACCTTAGATTTCCTATTATT+TGG - chr6_2:24481439-24481458 None:intergenic 25.0%
! AAATAATAGGAAATCTAAGG+TGG + chr6_2:24481438-24481457 Msa0913550:CDS 25.0%
!! GATGTTTTTGAAAAGGATAG+TGG + chr6_2:24478606-24478625 Msa0913550:CDS 30.0%
CGTCCATAAAAAAGAAAGTA+TGG - chr6_2:24478711-24478730 None:intergenic 30.0%
ATCGTATAACAAAAGAATGG+AGG + chr6_2:24478933-24478952 Msa0913550:intron 30.0%
!! GGAAAGCAAAAGTATTAATG+TGG + chr6_2:24478954-24478973 Msa0913550:intron 30.0%
!! TAAGAAGTGCTAAGATTGAA+AGG + chr6_2:24479033-24479052 Msa0913550:intron 30.0%
GTCACAACATATTTCATAAG+TGG + chr6_2:24479088-24479107 Msa0913550:intron 30.0%
TACCGTATATTCATTTCAAG+GGG - chr6_2:24480100-24480119 None:intergenic 30.0%
GTACCGTATATTCATTTCAA+GGG - chr6_2:24480101-24480120 None:intergenic 30.0%
AGTACCGTATATTCATTTCA+AGG - chr6_2:24480102-24480121 None:intergenic 30.0%
ATAAGTGTGAAATGAACCAA+GGG - chr6_2:24480148-24480167 None:intergenic 30.0%
AATAAGTGTGAAATGAACCA+AGG - chr6_2:24480149-24480168 None:intergenic 30.0%
GAGTTATAAAAGGGAAAAAG+TGG + chr6_2:24480239-24480258 Msa0913550:intron 30.0%
TTCCTTGAATTTGTACAGTT+TGG + chr6_2:24480878-24480897 Msa0913550:intron 30.0%
! GATGAACTATTAACCGTTTT+CGG + chr6_2:24480995-24481014 Msa0913550:CDS 30.0%
! TTCTTGAAATTTGGTTCGAT+TGG - chr6_2:24481127-24481146 None:intergenic 30.0%
!! TCGAGTTGTTTCTTGAAATT+TGG - chr6_2:24481136-24481155 None:intergenic 30.0%
TGTTCGAAGATCCAAATTAA+TGG - chr6_2:24481191-24481210 None:intergenic 30.0%
! CATGTTTTGCTCCAAATAAT+AGG + chr6_2:24481425-24481444 Msa0913550:CDS 30.0%
! TTTATTGGTTGTCATGTCCT+AGG + chr6_2:24478553-24478572 Msa0913550:CDS 35.0%
CTTACAATCCTTTCAATCCT+AGG - chr6_2:24478573-24478592 None:intergenic 35.0%
CTAGGATTGAAAGGATTGTA+AGG + chr6_2:24478571-24478590 Msa0913550:CDS 35.0%
AAAACGGGATCTGTCTAATT+TGG - chr6_2:24478896-24478915 None:intergenic 35.0%
!! ACAGATCCCGTTTTGTTAAA+TGG + chr6_2:24478902-24478921 Msa0913550:intron 35.0%
! ATAACTGAGTTGACATATCG+TGG + chr6_2:24479369-24479388 Msa0913550:intron 35.0%
! GATGCGTCTATTTTGTTGAA+TGG + chr6_2:24479505-24479524 Msa0913550:CDS 35.0%
GAAGATGACGAAAAACAACA+TGG + chr6_2:24479538-24479557 Msa0913550:CDS 35.0%
! TATAGCACGAAGGTTTTCAA+TGG - chr6_2:24479599-24479618 None:intergenic 35.0%
AATTGAGGCATGTAAGATCA+AGG - chr6_2:24479906-24479925 None:intergenic 35.0%
CTCTCAATCTATTTATCACC+TGG + chr6_2:24480026-24480045 Msa0913550:intron 35.0%
!!! ATGGTTTTGTACCTAGACAA+GGG - chr6_2:24480069-24480088 None:intergenic 35.0%
!!! AATGGTTTTGTACCTAGACA+AGG - chr6_2:24480070-24480089 None:intergenic 35.0%
ACCCCCTTGAAATGAATATA+CGG + chr6_2:24480095-24480114 Msa0913550:intron 35.0%
ACCGTATATTCATTTCAAGG+GGG - chr6_2:24480099-24480118 None:intergenic 35.0%
AACCAAGGGCTCAATTAATT+CGG - chr6_2:24480134-24480153 None:intergenic 35.0%
AGTAAATGGCTCAGTTAATC+CGG + chr6_2:24480337-24480356 Msa0913550:intron 35.0%
!! GGAGGGAGTATCAAAATATT+TGG + chr6_2:24480363-24480382 Msa0913550:intron 35.0%
CTTTCTCTTGTAAATGAGAC+CGG - chr6_2:24480526-24480545 None:intergenic 35.0%
TTGTCTCTTGTAAATAGGAC+CGG + chr6_2:24480635-24480654 Msa0913550:intron 35.0%
CTCCAAACTGTACAAATTCA+AGG - chr6_2:24480883-24480902 None:intergenic 35.0%
CTTGAATTTGTACAGTTTGG+AGG + chr6_2:24480881-24480900 Msa0913550:intron 35.0%
CTGCATTTACACTGAAGTTT+AGG - chr6_2:24480943-24480962 None:intergenic 35.0%
CTAAACTTCAGTGTAAATGC+AGG + chr6_2:24480941-24480960 Msa0913550:CDS 35.0%
!! ATGATTCGGTTGAACATTGT+TGG - chr6_2:24481091-24481110 None:intergenic 35.0%
! TGAAATTTGGTTCGATTGGT+GGG - chr6_2:24481123-24481142 None:intergenic 35.0%
! TTGAAATTTGGTTCGATTGG+TGG - chr6_2:24481124-24481143 None:intergenic 35.0%
ATCCAAATTAATGGCGTTCA+GGG - chr6_2:24481182-24481201 None:intergenic 35.0%
ATTAACCTCTTGAATCACCA+GGG + chr6_2:24481238-24481257 Msa0913550:CDS 35.0%
! TTCACAATCTCCTTAGTCTT+AGG - chr6_2:24481298-24481317 None:intergenic 35.0%
!!! AGTCAATTGGATGTTTTGAC+TGG + chr6_2:24481379-24481398 Msa0913550:CDS 35.0%
!!! GATGTTTTGACTGGAAATCA+AGG + chr6_2:24481388-24481407 Msa0913550:CDS 35.0%
TGTCATGTCCTAGGATTGAA+AGG + chr6_2:24478562-24478581 Msa0913550:CDS 40.0%
AAAAAGAGTCTGAGTATGCC+AGG - chr6_2:24478639-24478658 None:intergenic 40.0%
!! TTTCCATGATTGCTTTTCCC+AGG + chr6_2:24478656-24478675 Msa0913550:CDS 40.0%
ATACCTGGGAAAAGCAATCA+TGG - chr6_2:24478662-24478681 None:intergenic 40.0%
AAGAGGATCCATCGTTGTAT+CGG + chr6_2:24478868-24478887 Msa0913550:intron 40.0%
! ATTTCAAGGGGGTATGAGAA+TGG - chr6_2:24480088-24480107 None:intergenic 40.0%
ACCAAGGGCTCAATTAATTC+GGG - chr6_2:24480133-24480152 None:intergenic 40.0%
GTAAATGGCTCAGTTAATCC+GGG + chr6_2:24480338-24480357 Msa0913550:intron 40.0%
AGTTCATCTGTTCGTGCAAA+TGG - chr6_2:24480983-24481002 None:intergenic 40.0%
ACCAGATAGAGCAACTACAT+CGG - chr6_2:24481041-24481060 None:intergenic 40.0%
! ATGAGCTTGACCAAAAGTGT+GGG - chr6_2:24481065-24481084 None:intergenic 40.0%
AATGAGCTTGACCAAAAGTG+TGG - chr6_2:24481066-24481085 None:intergenic 40.0%
ATCCCTGAACGCCATTAATT+TGG + chr6_2:24481177-24481196 Msa0913550:CDS 40.0%
GATCCAAATTAATGGCGTTC+AGG - chr6_2:24481183-24481202 None:intergenic 40.0%
CATTAACCTCTTGAATCACC+AGG + chr6_2:24481237-24481256 Msa0913550:CDS 40.0%
GTTTACATCGGATCAAGACT+TGG + chr6_2:24481264-24481283 Msa0913550:CDS 40.0%
!! CTTTCTGGTTAGAAGCAAAG+AGG - chr6_2:24481321-24481340 None:intergenic 40.0%
CTACTCTCTCAGAGGAAACA+AGG - chr6_2:24478497-24478516 None:intergenic 45.0%
! TTTCCTCTGAGAGAGTAGCA+AGG + chr6_2:24478499-24478518 Msa0913550:CDS 45.0%
AGAGGATCCATCGTTGTATC+GGG + chr6_2:24478869-24478888 Msa0913550:intron 45.0%
ATTTGGACCCGATACAACGA+TGG - chr6_2:24478879-24478898 None:intergenic 45.0%
! GCTTACGGATTATAGCACGA+AGG - chr6_2:24479609-24479628 None:intergenic 45.0%
CAACTCGTGGACATTGCTTA+CGG - chr6_2:24479624-24479643 None:intergenic 45.0%
GTCAAGGGAGTTAACAAACC+AGG - chr6_2:24480047-24480066 None:intergenic 45.0%
TGTACCTAGACAAGGGTCAA+GGG - chr6_2:24480062-24480081 None:intergenic 45.0%
TTGTACCTAGACAAGGGTCA+AGG - chr6_2:24480063-24480082 None:intergenic 45.0%
CTCAATTAATTCGGGACGGA+GGG - chr6_2:24480125-24480144 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+CGG - chr6_2:24480129-24480148 None:intergenic 45.0%
TCCCGAATTAATTGAGCCCT+TGG + chr6_2:24480129-24480148 Msa0913550:intron 45.0%
TCTCTTGTAAATGAGACCGG+AGG - chr6_2:24480523-24480542 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr6_2:24480638-24480657 Msa0913550:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr6_2:24480639-24480658 Msa0913550:intron 45.0%
CCAATGGCACGTCAAAATCT+GGG - chr6_2:24480907-24480926 None:intergenic 45.0%
!! CCAGATTTTGACGTGCCATT+GGG + chr6_2:24480905-24480924 Msa0913550:CDS 45.0%
! AGGCTGTCTTTTCTTCCCAA+TGG - chr6_2:24480923-24480942 None:intergenic 45.0%
CTGTTCGTGCAAATGGTACT+GGG - chr6_2:24480976-24480995 None:intergenic 45.0%
TCTGTTCGTGCAAATGGTAC+TGG - chr6_2:24480977-24480996 None:intergenic 45.0%
ACCGATGTAGTTGCTCTATC+TGG + chr6_2:24481037-24481056 Msa0913550:CDS 45.0%
GTGGGTCGGATTCAATGATT+CGG - chr6_2:24481105-24481124 None:intergenic 45.0%
! ATTTGGTTCGATTGGTGGGT+CGG - chr6_2:24481119-24481138 None:intergenic 45.0%
CGAAGCAACATGTCCAAATG+AGG + chr6_2:24481153-24481172 Msa0913550:CDS 45.0%
TCACCAGGGTGTGTTTACAT+CGG + chr6_2:24481252-24481271 Msa0913550:CDS 45.0%
GGCAAGTCATCCTAAGACTA+AGG + chr6_2:24481285-24481304 Msa0913550:CDS 45.0%
! GAAATCTAAGGTGGCATCTG+TGG + chr6_2:24481447-24481466 Msa0913550:CDS 45.0%
!!! GTATTTATTTTATTAATTTA+AGG + chr6_2:24480663-24480682 Msa0913550:intron 5.0%
! AAGGATAGTGGTCAAGCTCC+TGG + chr6_2:24478618-24478637 Msa0913550:CDS 50.0%
! ATGGTGCCAACTTCGCTTTG+AGG + chr6_2:24479557-24479576 Msa0913550:CDS 50.0%
! TGGTGCCAACTTCGCTTTGA+GGG + chr6_2:24479558-24479577 Msa0913550:CDS 50.0%
AACTCCCTTGACCCTTGTCT+AGG + chr6_2:24480055-24480074 Msa0913550:intron 50.0%
GCTCAATTAATTCGGGACGG+AGG - chr6_2:24480126-24480145 None:intergenic 50.0%
ATGGCTCAGTTAATCCGGGA+CGG + chr6_2:24480342-24480361 Msa0913550:intron 50.0%
! TTTTGATACTCCCTCCGTCC+CGG - chr6_2:24480359-24480378 None:intergenic 50.0%
!! CCCAGATTTTGACGTGCCAT+TGG + chr6_2:24480904-24480923 Msa0913550:CDS 50.0%
CCCAATGGCACGTCAAAATC+TGG - chr6_2:24480908-24480927 None:intergenic 50.0%
! CTATCTGGTGCCCACACTTT+TGG + chr6_2:24481052-24481071 Msa0913550:CDS 50.0%
GCGTTCAGGGATTCCTCATT+TGG - chr6_2:24481169-24481188 None:intergenic 50.0%
ACACACCCTGGTGATTCAAG+AGG - chr6_2:24481246-24481265 None:intergenic 50.0%
GATCCGATGTAAACACACCC+TGG - chr6_2:24481258-24481277 None:intergenic 50.0%
! ATCTAAGGTGGCATCTGTGG+TGG + chr6_2:24481450-24481469 Msa0913550:CDS 50.0%
AGGCCTTGCTACTCTCTCAG+AGG - chr6_2:24478505-24478524 None:intergenic 55.0%
TAGTCTAGTCCCCTCACAGC+AGG - chr6_2:24478528-24478547 None:intergenic 55.0%
!! TGCCAACTTCGCTTTGAGGG+AGG + chr6_2:24479561-24479580 Msa0913550:CDS 55.0%
CTCCTCCCTCAAAGCGAAGT+TGG - chr6_2:24479566-24479585 None:intergenic 55.0%
!! CAACTTCGCTTTGAGGGAGG+AGG + chr6_2:24479564-24479583 Msa0913550:CDS 55.0%
CTCAGTTAATCCGGGACGGA+GGG + chr6_2:24480346-24480365 Msa0913550:intron 55.0%
! ATCTGTGGTGGAAGACGTGG+TGG + chr6_2:24481462-24481481 Msa0913550:CDS 55.0%
TAGCAAGGCCTCCTGCTGTG+AGG + chr6_2:24478514-24478533 Msa0913550:CDS 60.0%
AGCAAGGCCTCCTGCTGTGA+GGG + chr6_2:24478515-24478534 Msa0913550:CDS 60.0%
TCTAGTCCCCTCACAGCAGG+AGG - chr6_2:24478525-24478544 None:intergenic 60.0%
TCTGCGCACGAGACAACTCG+TGG - chr6_2:24479637-24479656 None:intergenic 60.0%
CTTCACGTGCAGCGATGACG+AGG - chr6_2:24479663-24479682 None:intergenic 60.0%
GCTCAGTTAATCCGGGACGG+AGG + chr6_2:24480345-24480364 Msa0913550:intron 60.0%
! GGCATCTGTGGTGGAAGACG+TGG + chr6_2:24481459-24481478 Msa0913550:CDS 60.0%
GCAAGGCCTCCTGCTGTGAG+GGG + chr6_2:24478516-24478535 Msa0913550:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 24478435 24481504 24478435 ID=Msa0913550;Name=Msa0913550
chr6_2 mRNA 24478435 24481504 24478435 ID=Msa0913550-mRNA-1;Parent=Msa0913550;Name=Msa0913550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|348
chr6_2 exon 24478435 24478677 24478435 ID=Msa0913550-mRNA-1:exon:4777;Parent=Msa0913550-mRNA-1
chr6_2 exon 24479499 24479693 24479499 ID=Msa0913550-mRNA-1:exon:4778;Parent=Msa0913550-mRNA-1
chr6_2 exon 24480896 24481504 24480896 ID=Msa0913550-mRNA-1:exon:4779;Parent=Msa0913550-mRNA-1
chr6_2 CDS 24478435 24478677 24478435 ID=Msa0913550-mRNA-1:cds;Parent=Msa0913550-mRNA-1
chr6_2 CDS 24479499 24479693 24479499 ID=Msa0913550-mRNA-1:cds;Parent=Msa0913550-mRNA-1
chr6_2 CDS 24480896 24481504 24480896 ID=Msa0913550-mRNA-1:cds;Parent=Msa0913550-mRNA-1
Gene Sequence

>Msa0913550

ATGGCTATGGTTAGTGCAAGTAGATCTCTTTTTATTTCTTTTCTATTAGCTTCTGTAATCCTTGTTTCCTCTGAGAGAGTAGCAAGGCCTCCTGCTGTGAGGGGACTAGACTATGATTTTTATTGGTTGTCATGTCCTAGGATTGAAAGGATTGTAAGGAAACATCTTGAAGATGTTTTTGAAAAGGATAGTGGTCAAGCTCCTGGCATACTCAGACTCTTTTTCCATGATTGCTTTTCCCAGGGATGCGATGCGTCTATTTTGTTGAATGGTGTTAACGGAGAAGATGACGAAAAACAACATGGTGCCAACTTCGCTTTGAGGGAGGAGGCTCTTCAAACCATTGAAAACCTTCGTGCTATAATCCGTAAGCAATGTCCACGAGTTGTCTCGTGCGCAGATATCCTCGTCATCGCTGCACGTGAAGCTGTTCGCCAATTTGGAGGCCCAGATTTTGACGTGCCATTGGGAAGAAAAGACAGCCTAAACTTCAGTGTAAATGCAGGAGATAATCTCCCAGTACCATTTGCACGAACAGATGAACTATTAACCGTTTTCGGATCAAAAAAATTCGATGCAACCGATGTAGTTGCTCTATCTGGTGCCCACACTTTTGGTCAAGCTCATTGTCCAACAATGTTCAACCGAATCATTGAATCCGACCCACCAATCGAACCAAATTTCAAGAAACAACTCGAAGCAACATGTCCAAATGAGGAATCCCTGAACGCCATTAATTTGGATCTTCGAACACCAAACACATTCGATAATATGTACTACATTAACCTCTTGAATCACCAGGGTGTGTTTACATCGGATCAAGACTTGGCAAGTCATCCTAAGACTAAGGAGATTGTGAACCTCTTTGCTTCTAACCAGAAAGAGTTTTTTAACAAATTTGCTAATGCTTTTGTTAAGGTTAGTCAATTGGATGTTTTGACTGGAAATCAAGGAGAAATTCGTAAGTCATGTTTTGCTCCAAATAATAGGAAATCTAAGGTGGCATCTGTGGTGGAAGACGTGGTGGAAATTGCAGCAAACATGTAG
Protein sequence

>Msa0913550

MAMVSASRSLFISFLLASVILVSSERVARPPAVRGLDYDFYWLSCPRIERIVRKHLEDVFEKDSGQAPGILRLFFHDCFSQGCDASILLNGVNGEDDEKQHGANFALREEALQTIENLRAIIRKQCPRVVSCADILVIAAREAVRQFGGPDFDVPLGRKDSLNFSVNAGDNLPVPFARTDELLTVFGSKKFDATDVVALSGAHTFGQAHCPTMFNRIIESDPPIEPNFKKQLEATCPNEESLNAINLDLRTPNTFDNMYYINLLNHQGVFTSDQDLASHPKTKEIVNLFASNQKEFFNKFANAFVKVSQLDVLTGNQGEIRKSCFAPNNRKSKVASVVEDVVEIAANM*