Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0451100 | KEH33680.1 | 93.905 | 443 | 22 | 5 | 1 | 442 | 1 | 439 | 0.0 | 843 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0451100 | sp|F4IDQ5|JASON_ARATH | 38.477 | 486 | 220 | 17 | 1 | 441 | 29 | 480 | 8.48e-72 | 237 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0451100 | A0A072V681 | 93.905 | 443 | 22 | 5 | 1 | 442 | 1 | 439 | 0.0 | 843 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0405080 | Msa0451100 | 0.855436 | 6.318213e-62 | -8.615850e-47 |
Msa0451100 | Msa0498370 | 0.916551 | 1.554814e-85 | -8.615850e-47 |
Msa0451100 | Msa0592510 | 0.811382 | 7.198033e-51 | -8.615850e-47 |
Msa0451100 | Msa1106220 | 0.808359 | 3.220082e-50 | -8.615850e-47 |
Msa0350110 | Msa0451100 | 0.893057 | 8.955807e-75 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0451100 | MtrunA17_Chr3g0095751 | 93.905 | 443 | 22 | 5 | 1 | 442 | 25 | 463 | 0.0 | 842 |
Msa0451100 | MtrunA17_Chr5g0442731 | 45.474 | 464 | 197 | 11 | 1 | 422 | 24 | 473 | 2.07e-115 | 346 |
Msa0451100 | MtrunA17_Chr1g0183391 | 39.683 | 126 | 62 | 4 | 284 | 401 | 317 | 436 | 3.68e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0451100 | AT1G06660.1 | 38.477 | 486 | 220 | 17 | 1 | 441 | 29 | 480 | 8.62e-73 | 237 |
Msa0451100 | AT2G30820.2 | 36.538 | 468 | 211 | 15 | 1 | 433 | 1 | 417 | 4.01e-61 | 204 |
Msa0451100 | AT2G30820.1 | 36.538 | 468 | 211 | 15 | 1 | 433 | 1 | 417 | 4.01e-61 | 204 |
Find 148 sgRNAs with CRISPR-Local
Find 343 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCACCTAGGCTGTTATT+TGG | 0.189762 | 3_3:-38205905 | None:intergenic |
GTCCTCCAAAGTTTCGTTCT+TGG | 0.196344 | 3_3:+38205106 | Msa0451100:CDS |
AGGATTGTTGGGTTAAATAT+TGG | 0.204732 | 3_3:+38207114 | Msa0451100:three_prime_UTR |
GAAGCCTGCATCTGTTATTT+TGG | 0.212458 | 3_3:+38206078 | Msa0451100:CDS |
TAGCATGCCAGCTCACTTTC+TGG | 0.229927 | 3_3:-38206364 | None:intergenic |
TTGTATTTGTTGGTTGAATT+TGG | 0.246872 | 3_3:-38206250 | None:intergenic |
CGGCACGGCGGCGGTGGCAG+CGG | 0.253515 | 3_3:-38202230 | None:intergenic |
TGGAAGAAGGCTTGTCTTCT+TGG | 0.254792 | 3_3:+38206053 | Msa0451100:CDS |
CGATGGGACTGAAATGAATA+AGG | 0.261654 | 3_3:+38205706 | Msa0451100:CDS |
GGAGGAGAGAAGAAAGAAAA+TGG | 0.286742 | 3_3:+38206099 | Msa0451100:CDS |
TTCAATGATATATGCTCTTC+TGG | 0.292753 | 3_3:+38202085 | Msa0451100:five_prime_UTR |
ATCTTCATTGGGGTAGGATT+TGG | 0.293500 | 3_3:-38205824 | None:intergenic |
TCCTGTGAGTCATCGGCTTA+TGG | 0.325210 | 3_3:+38205773 | Msa0451100:CDS |
AGCACTGCATTGGGACTTAA+TGG | 0.325533 | 3_3:-38207007 | None:intergenic |
TCATACTTCTTTGTATTTGT+TGG | 0.327303 | 3_3:-38206260 | None:intergenic |
GGATTGTTGGGTTAAATATT+GGG | 0.336604 | 3_3:+38207115 | Msa0451100:three_prime_UTR |
CCACCGCCGCCGTGCCGTCT+CGG | 0.337432 | 3_3:+38202236 | Msa0451100:CDS |
TACACAAACTGGGACTTAAC+AGG | 0.339806 | 3_3:-38205881 | None:intergenic |
ATCCCTTCAGATATCTTCAT+TGG | 0.349727 | 3_3:-38205836 | None:intergenic |
CCTGACCTACCTTCTTCACT+TGG | 0.366149 | 3_3:+38202056 | Msa0451100:five_prime_UTR |
CCTTCATGTAGTAACGATTC+TGG | 0.376618 | 3_3:+38205084 | Msa0451100:CDS |
TTGAATGGTTGGACATTAGT+TGG | 0.377570 | 3_3:-38205156 | None:intergenic |
TGTTATTTGGATACACAAAC+TGG | 0.390899 | 3_3:-38205892 | None:intergenic |
TCCCTTCAGATATCTTCATT+GGG | 0.406133 | 3_3:-38205835 | None:intergenic |
TGGGTTAAATATTGGGCATT+GGG | 0.410553 | 3_3:+38207122 | Msa0451100:three_prime_UTR |
CCGAGACGGCACGGCGGCGG+TGG | 0.413377 | 3_3:-38202236 | None:intergenic |
CACGGCGGCGGTGGCAGCGG+CGG | 0.414398 | 3_3:-38202227 | None:intergenic |
TCATTCTCATCAAAAGCAAT+TGG | 0.422122 | 3_3:-38206858 | None:intergenic |
TTGGGAGTTGGCGGATTGAA+TGG | 0.422674 | 3_3:-38205171 | None:intergenic |
CAAGTACCCCTACTGAAATT+CGG | 0.424717 | 3_3:+38205034 | Msa0451100:CDS |
TGCAGCAACCATCCCAATGA+TGG | 0.431713 | 3_3:-38206164 | None:intergenic |
TATATTTGATGAGGATTGTT+GGG | 0.432129 | 3_3:+38207103 | Msa0451100:three_prime_UTR |
AAGACAATGTGCATCGTAAT+GGG | 0.432569 | 3_3:+38203933 | Msa0451100:CDS |
TTGGGTTAAATATTGGGCAT+TGG | 0.435150 | 3_3:+38207121 | Msa0451100:three_prime_UTR |
ATGTTCCTGCGCAAGATTCA+AGG | 0.435844 | 3_3:+38205963 | Msa0451100:CDS |
AGGGATCACAGAGTGATGAT+AGG | 0.453830 | 3_3:+38203969 | Msa0451100:CDS |
CCTGTCGATAGGCCCATCAT+TGG | 0.456758 | 3_3:+38206151 | Msa0451100:CDS |
CCAAGCAATCAGCACTGCAT+TGG | 0.458893 | 3_3:-38207017 | None:intergenic |
CAAGCAATCAGCACTGCATT+GGG | 0.465777 | 3_3:-38207016 | None:intergenic |
TTAACAGGGTAAACAGTTCC+AGG | 0.469267 | 3_3:-38205866 | None:intergenic |
GAGCAAGATACTTGAGGAAG+AGG | 0.471401 | 3_3:+38205937 | Msa0451100:CDS |
GAAGACAATGTGCATCGTAA+TGG | 0.477516 | 3_3:+38203932 | Msa0451100:CDS |
GTGCCGAGACGGCACGGCGG+CGG | 0.482484 | 3_3:-38202239 | None:intergenic |
AGAAGCCAAGAACGAAACTT+TGG | 0.484007 | 3_3:-38205111 | None:intergenic |
AATATTGGGCATTGGGAGAT+CGG | 0.485654 | 3_3:+38207129 | Msa0451100:three_prime_UTR |
TCCTCCAAAATAACAGATGC+AGG | 0.487575 | 3_3:-38206082 | None:intergenic |
GATGGGACTGAAATGAATAA+GGG | 0.488622 | 3_3:+38205707 | Msa0451100:CDS |
TCAAATATATACAATACAAG+TGG | 0.489054 | 3_3:-38207089 | None:intergenic |
ACGACGCCACGGACTGTGGA+TGG | 0.492778 | 3_3:-38206920 | None:intergenic |
ATGGGAATATCATGACTCTT+CGG | 0.494202 | 3_3:+38205652 | Msa0451100:CDS |
CCAATGCACACAATACTCAA+TGG | 0.495131 | 3_3:+38205633 | Msa0451100:CDS |
CCAAGTGAAGAAGGTAGGTC+AGG | 0.497945 | 3_3:-38202056 | None:intergenic |
GTCCATCTCATTACTCTATG+AGG | 0.502624 | 3_3:+38206962 | Msa0451100:three_prime_UTR |
GCAAAGTTTCTTAAAGCTTG+TGG | 0.503956 | 3_3:+38205003 | Msa0451100:CDS |
ATCTTCCTTGAATCTTGCGC+AGG | 0.504663 | 3_3:-38205968 | None:intergenic |
CAATGCACACAATACTCAAT+GGG | 0.505196 | 3_3:+38205634 | Msa0451100:CDS |
TTCAGTAGGGGTACTTGCTA+TGG | 0.505440 | 3_3:-38205028 | None:intergenic |
CTCTTCGGAAGGAAGTGGGC+AGG | 0.505993 | 3_3:+38205667 | Msa0451100:CDS |
GAAGAGGACCCAAGTGAAGA+AGG | 0.507890 | 3_3:-38202065 | None:intergenic |
CCAATGATGGGCCTATCGAC+AGG | 0.508176 | 3_3:-38206151 | None:intergenic |
ATATATTTGATGAGGATTGT+TGG | 0.511343 | 3_3:+38207102 | Msa0451100:three_prime_UTR |
CCAATGCAGTGCTGATTGCT+TGG | 0.511818 | 3_3:+38207017 | Msa0451100:three_prime_UTR |
CCATTGAGTATTGTGTGCAT+TGG | 0.512181 | 3_3:-38205633 | None:intergenic |
CTTCGGAAGGAAGTGGGCAG+GGG | 0.512249 | 3_3:+38205669 | Msa0451100:CDS |
TGCTCCTCCTCCTAAGTGGT+GGG | 0.512880 | 3_3:+38206213 | Msa0451100:CDS |
CATGACTCTTCGGAAGGAAG+TGG | 0.514139 | 3_3:+38205662 | Msa0451100:CDS |
GATGCTTTCCGAATTTCAGT+AGG | 0.514555 | 3_3:-38205042 | None:intergenic |
CTGTCGATAGGCCCATCATT+GGG | 0.516223 | 3_3:+38206152 | Msa0451100:CDS |
CAACACGACGCCACGGACTG+TGG | 0.521235 | 3_3:-38206924 | None:intergenic |
TCTTCGGAAGGAAGTGGGCA+GGG | 0.526061 | 3_3:+38205668 | Msa0451100:CDS |
TATTTCATCCTGTGAGTCAT+CGG | 0.528657 | 3_3:+38205766 | Msa0451100:CDS |
ATGCTCCTCCTCCTAAGTGG+TGG | 0.530708 | 3_3:+38206212 | Msa0451100:CDS |
GAGAAGAAAGAAAATGGAGA+TGG | 0.532138 | 3_3:+38206105 | Msa0451100:CDS |
TTAAAGATTAATAACCTGCT+AGG | 0.536769 | 3_3:-38205243 | None:intergenic |
AGTGAATCTACCGTGGAAGA+AGG | 0.537717 | 3_3:+38206040 | Msa0451100:CDS |
TCTACTTTGTTTCTGACCGA+AGG | 0.540444 | 3_3:+38203796 | Msa0451100:CDS |
GTTCACAGGAAAGATATTTG+CGG | 0.540461 | 3_3:+38206831 | Msa0451100:intron |
CTTATTCATTTCAGTCCCAT+CGG | 0.540593 | 3_3:-38205705 | None:intergenic |
CTGACCTACCTTCTTCACTT+GGG | 0.541465 | 3_3:+38202057 | Msa0451100:five_prime_UTR |
GAGTTGGCGGATTGAATGGT+TGG | 0.541865 | 3_3:-38205167 | None:intergenic |
GTTCAGACCACACACCTAGC+AGG | 0.546465 | 3_3:+38205229 | Msa0451100:CDS |
TCAGATATCTTCATTGGGGT+AGG | 0.551648 | 3_3:-38205830 | None:intergenic |
TTCATTTCAGTCCCATCGGT+CGG | 0.552448 | 3_3:-38205701 | None:intergenic |
ATGCTTTCCGAATTTCAGTA+GGG | 0.554306 | 3_3:-38205041 | None:intergenic |
GGGAGCTATCATCCGACCGA+TGG | 0.556557 | 3_3:+38205689 | Msa0451100:CDS |
ACATTACATTGGCTTTGTTG+TGG | 0.556918 | 3_3:-38202261 | None:intergenic |
GAACACGAAAGCAAGTGAAA+AGG | 0.559259 | 3_3:-38202177 | None:intergenic |
TTCAGGACCAGAAAGTGAGC+TGG | 0.559748 | 3_3:+38206357 | Msa0451100:intron |
ACCATAAGCCGATGACTCAC+AGG | 0.559884 | 3_3:-38205774 | None:intergenic |
CCTCCTCCTAAGTGGTGGGA+TGG | 0.560739 | 3_3:+38206217 | Msa0451100:CDS |
CCATTGCCATCCCACCACTT+AGG | 0.560739 | 3_3:-38206223 | None:intergenic |
TCTGAAGGGATGCAAACTCC+TGG | 0.562862 | 3_3:+38205848 | Msa0451100:CDS |
GTTGTGGTGCCGAGACGGCA+CGG | 0.566404 | 3_3:-38202245 | None:intergenic |
TCAGAAACAAAGTAGACAAA+CGG | 0.567517 | 3_3:-38203789 | None:intergenic |
TGTATTGTATATATTTGATG+AGG | 0.567911 | 3_3:+38207094 | Msa0451100:three_prime_UTR |
CGACGCCACGGACTGTGGAT+GGG | 0.567931 | 3_3:-38206919 | None:intergenic |
CCTAAGTGGTGGGATGGCAA+TGG | 0.569676 | 3_3:+38206223 | Msa0451100:CDS |
GTGTATCCAAATAACAGCCT+AGG | 0.571499 | 3_3:+38205899 | Msa0451100:CDS |
ATGCTACGCCGTTCGAAGAG+AGG | 0.575521 | 3_3:+38206381 | Msa0451100:CDS |
CAAATATATACAATACAAGT+GGG | 0.576971 | 3_3:-38207088 | None:intergenic |
ACCCCAATGAAGATATCTGA+AGG | 0.577653 | 3_3:+38205833 | Msa0451100:CDS |
CCATCCCACCACTTAGGAGG+AGG | 0.578549 | 3_3:-38206217 | None:intergenic |
AGTATCACATTCAAAACGTA+CGG | 0.579270 | 3_3:-38205741 | None:intergenic |
AAGAGCATATATCATTGAAG+AGG | 0.580315 | 3_3:-38202081 | None:intergenic |
TTGGGATGGTTGCTGCACAT+TGG | 0.584288 | 3_3:+38206170 | Msa0451100:CDS |
GGAGCTATCATCCGACCGAT+GGG | 0.587580 | 3_3:+38205690 | Msa0451100:CDS |
GGCGTCGTGTTGATATCTAT+AGG | 0.588523 | 3_3:+38206935 | Msa0451100:exon |
GTTCGAAGAGAGGTTGGAGA+AGG | 0.592220 | 3_3:+38206391 | Msa0451100:CDS |
CGATAGGCCCATCATTGGGA+TGG | 0.592976 | 3_3:+38206156 | Msa0451100:CDS |
AGCCAAGAACGAAACTTTGG+AGG | 0.594708 | 3_3:-38205108 | None:intergenic |
TAGATATCAACACGACGCCA+CGG | 0.596729 | 3_3:-38206931 | None:intergenic |
TACTGAAATTCGGAAAGCAT+CGG | 0.598546 | 3_3:+38205044 | Msa0451100:CDS |
TTCTCCAACCTCTCTTCGAA+CGG | 0.599277 | 3_3:-38206389 | None:intergenic |
TACCTCATAGAGTAATGAGA+TGG | 0.599918 | 3_3:-38206964 | None:intergenic |
AGTCATCGGCTTATGGTGGA+TGG | 0.599998 | 3_3:+38205780 | Msa0451100:CDS |
GCAGCAACCATCCCAATGAT+GGG | 0.601660 | 3_3:-38206163 | None:intergenic |
CTGATGCTCCTCCTCCTAAG+TGG | 0.601801 | 3_3:+38206209 | Msa0451100:CDS |
TCCAAATAACAGCCTAGGTG+AGG | 0.601979 | 3_3:+38205904 | Msa0451100:CDS |
TGGCAGCGGCGGATTTAGCG+TGG | 0.602215 | 3_3:-38202216 | None:intergenic |
CTCTAAGAGCAAGATACTTG+AGG | 0.603618 | 3_3:+38205931 | Msa0451100:CDS |
TTGCCATCCCACCACTTAGG+AGG | 0.606952 | 3_3:-38206220 | None:intergenic |
TACGCCGTTCGAAGAGAGGT+TGG | 0.606989 | 3_3:+38206385 | Msa0451100:CDS |
GCTTTGTTGTGGTGCCGAGA+CGG | 0.608775 | 3_3:-38202250 | None:intergenic |
AGGACCCAAGTGAAGAAGGT+AGG | 0.610700 | 3_3:-38202061 | None:intergenic |
CCCTTCAGATATCTTCATTG+GGG | 0.615934 | 3_3:-38205834 | None:intergenic |
CCAGAATCGTTACTACATGA+AGG | 0.617304 | 3_3:-38205084 | None:intergenic |
ATGACTCTTCGGAAGGAAGT+GGG | 0.617710 | 3_3:+38205663 | Msa0451100:CDS |
TGCTTTCCGAATTTCAGTAG+GGG | 0.618402 | 3_3:-38205040 | None:intergenic |
AGGATACTATCATCGCTCAA+AGG | 0.620789 | 3_3:+38206423 | Msa0451100:CDS |
CCCGCAAAACTCCTGTCGAT+AGG | 0.624406 | 3_3:+38206140 | Msa0451100:CDS |
AGAAGACAAGCCTTCTTCCA+CGG | 0.626278 | 3_3:-38206050 | None:intergenic |
TTCATCCCATCCACAGTCCG+TGG | 0.627583 | 3_3:+38206914 | Msa0451100:CDS |
CAGCGGCGGATTTAGCGTGG+TGG | 0.627645 | 3_3:-38202213 | None:intergenic |
CCCCAATGAAGATATCTGAA+GGG | 0.632021 | 3_3:+38205834 | Msa0451100:CDS |
GAATATCATGACTCTTCGGA+AGG | 0.632054 | 3_3:+38205656 | Msa0451100:CDS |
CTTTGTAAAGCAGGATGATG+TGG | 0.633113 | 3_3:+38203756 | Msa0451100:intron |
TGCTGCACATTGGATTGAAG+AGG | 0.634738 | 3_3:+38206180 | Msa0451100:CDS |
ACACAAACTGGGACTTAACA+GGG | 0.635382 | 3_3:-38205880 | None:intergenic |
TGTGAGTCATCGGCTTATGG+TGG | 0.636034 | 3_3:+38205776 | Msa0451100:CDS |
TTAATAACCTGCTAGGTGTG+TGG | 0.641765 | 3_3:-38205236 | None:intergenic |
GTTGGAGAAGGCATTATCTG+AGG | 0.647231 | 3_3:+38206403 | Msa0451100:CDS |
ATGGGACTGAAATGAATAAG+GGG | 0.654668 | 3_3:+38205708 | Msa0451100:CDS |
GTTATTTGGATACACAAACT+GGG | 0.662575 | 3_3:-38205891 | None:intergenic |
AGATAAAAGTGAATCTACCG+TGG | 0.669633 | 3_3:+38206033 | Msa0451100:CDS |
TCTTAGAGACATCCTCACCT+AGG | 0.675023 | 3_3:-38205916 | None:intergenic |
TGATAGGCAGCTTAAAGACG+AGG | 0.694138 | 3_3:+38203985 | Msa0451100:CDS |
GGACTGAAATGAATAAGGGG+AGG | 0.697836 | 3_3:+38205711 | Msa0451100:CDS |
GTGGTGCCGAGACGGCACGG+CGG | 0.818841 | 3_3:-38202242 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTTTTTTGAATTTGAATA+TGG | - | chr3_3:38201985-38202004 | None:intergenic | 15.0% |
!! | AAACTTAATTCAATAATCAT+AGG | - | chr3_3:38202409-38202428 | None:intergenic | 15.0% |
!! | AAAAAATTGTTAAATAGGAA+TGG | + | chr3_3:38202553-38202572 | Msa0451100:intron | 15.0% |
!! | AAAAATTGTTAAATAGGAAT+GGG | + | chr3_3:38202554-38202573 | Msa0451100:intron | 15.0% |
!!! | GATTAATTTTATCGATTTAA+AGG | + | chr3_3:38202651-38202670 | Msa0451100:intron | 15.0% |
!! | TTCAAAAAAAAAAATTAAGC+TGG | + | chr3_3:38202815-38202834 | Msa0451100:intron | 15.0% |
!!! | TTTTTTTTTTTTTTCCTGTT+TGG | + | chr3_3:38202849-38202868 | Msa0451100:intron | 15.0% |
!!! | TTTTTTTTTTTTTCCTGTTT+GGG | + | chr3_3:38202850-38202869 | Msa0451100:intron | 15.0% |
!!! | TTTTAGGTTTTTTTTTTTGT+TGG | + | chr3_3:38202911-38202930 | Msa0451100:intron | 15.0% |
!!! | ATTTACTGAAATTTTAGTTT+TGG | + | chr3_3:38203155-38203174 | Msa0451100:intron | 15.0% |
!!! | AAAGTATTTAATAGTTTTCA+TGG | + | chr3_3:38203559-38203578 | Msa0451100:intron | 15.0% |
!!! | AAGTATTTAATAGTTTTCAT+GGG | + | chr3_3:38203560-38203579 | Msa0451100:intron | 15.0% |
!!! | TTAACCTTTTTTTTTTTGAA+AGG | + | chr3_3:38205262-38205281 | Msa0451100:intron | 15.0% |
!! | TGAAAAGGTTATATTTAATA+TGG | - | chr3_3:38205577-38205596 | None:intergenic | 15.0% |
!! | TAATGAATTGAAAAATGGAT+CGG | - | chr3_3:38202150-38202169 | None:intergenic | 20.0% |
!!! | ATCCATTTTTCAATTCATTA+TGG | + | chr3_3:38202150-38202169 | Msa0451100:exon | 20.0% |
!!! | TCCATTTTTCAATTCATTAT+GGG | + | chr3_3:38202151-38202170 | Msa0451100:exon | 20.0% |
!! | TACAAAAAATCAACAAGAAA+CGG | - | chr3_3:38202306-38202325 | None:intergenic | 20.0% |
!! | TGTGGAAAAAATTGTTAAAT+AGG | + | chr3_3:38202548-38202567 | Msa0451100:intron | 20.0% |
!! | ATGAAATTGTGAAATGATAA+TGG | + | chr3_3:38202677-38202696 | Msa0451100:intron | 20.0% |
!!! | AAATGTTAGTTTAATTAAGC+TGG | + | chr3_3:38202597-38202616 | Msa0451100:intron | 20.0% |
!!! | TTTTTTGAAGAACCTAAATT+CGG | - | chr3_3:38202804-38202823 | None:intergenic | 20.0% |
!! | AAAAAAAATTAAGCTGGATT+TGG | + | chr3_3:38202821-38202840 | Msa0451100:intron | 20.0% |
!!! | GAAATTTGTTTATGAAATGA+TGG | + | chr3_3:38202936-38202955 | Msa0451100:intron | 20.0% |
!!! | TAGGTTTGTTATTGATTTAA+AGG | + | chr3_3:38203109-38203128 | Msa0451100:intron | 20.0% |
!!! | TAGCTTTGTTATTGATTTAA+TGG | + | chr3_3:38203313-38203332 | Msa0451100:intron | 20.0% |
!!! | TAGTGTTTGAACTTTTATTT+AGG | + | chr3_3:38203395-38203414 | Msa0451100:intron | 20.0% |
!! | TAGCAAAATAAATTTACCTT+CGG | - | chr3_3:38203815-38203834 | None:intergenic | 20.0% |
!!! | TCTCTTTACTTTTTTAATGA+AGG | + | chr3_3:38204577-38204596 | Msa0451100:intron | 20.0% |
!!! | TTTAGATAATTGAGTTTTTG+AGG | - | chr3_3:38204735-38204754 | None:intergenic | 20.0% |
!! | AATAGACAAATGACTTAAAA+AGG | - | chr3_3:38204915-38204934 | None:intergenic | 20.0% |
!!! | TTAAGTTTGTTTACATGATT+TGG | + | chr3_3:38204966-38204985 | Msa0451100:intron | 20.0% |
!! | ATTGCCTTTCAAAAAAAAAA+AGG | - | chr3_3:38205269-38205288 | None:intergenic | 20.0% |
!!! | AAAATTGGTGTTTTAGAAAA+TGG | + | chr3_3:38205466-38205485 | Msa0451100:intron | 20.0% |
!!! | TTTCCCTTTTAGATTTTTTA+AGG | + | chr3_3:38205508-38205527 | Msa0451100:intron | 20.0% |
!!! | TTCCCTTTTAGATTTTTTAA+GGG | + | chr3_3:38205509-38205528 | Msa0451100:intron | 20.0% |
!!! | AAAGAAATTAACTTCTGAAA+AGG | - | chr3_3:38205592-38205611 | None:intergenic | 20.0% |
!!! | AATATCGTTTTAACTTTCAA+AGG | - | chr3_3:38206492-38206511 | None:intergenic | 20.0% |
!! | CAAATATATACAATACAAGT+GGG | - | chr3_3:38207091-38207110 | None:intergenic | 20.0% |
!! | TCAAATATATACAATACAAG+TGG | - | chr3_3:38207092-38207111 | None:intergenic | 20.0% |
!! | TGTATTGTATATATTTGATG+AGG | + | chr3_3:38207094-38207113 | Msa0451100:three_prime_UTR | 20.0% |
! | AATGAATTGAAAAATGGATC+GGG | - | chr3_3:38202149-38202168 | None:intergenic | 25.0% |
! | ACCCATAATGAATTGAAAAA+TGG | - | chr3_3:38202155-38202174 | None:intergenic | 25.0% |
! | GATTATGAGTTACATTACAT+TGG | - | chr3_3:38202275-38202294 | None:intergenic | 25.0% |
!! | AATTCCAAGAATTTTTGTTG+TGG | + | chr3_3:38202530-38202549 | Msa0451100:intron | 25.0% |
!! | TTTTCCACAACAAAAATTCT+TGG | - | chr3_3:38202537-38202556 | None:intergenic | 25.0% |
!! | AGTTTAATTAAGCTGGATTT+TGG | + | chr3_3:38202710-38202729 | Msa0451100:intron | 25.0% |
!! | GTTTAATTAAGCTGGATTTT+GGG | + | chr3_3:38202711-38202730 | Msa0451100:intron | 25.0% |
!!! | GTTCTGGTTTTTGATATTTT+AGG | + | chr3_3:38202895-38202914 | Msa0451100:intron | 25.0% |
! | GTTGAAATGATAGCTTAATT+CGG | + | chr3_3:38203016-38203035 | Msa0451100:intron | 25.0% |
!!! | TTTGGATTTTTTGTGTGTTT+AGG | + | chr3_3:38203090-38203109 | Msa0451100:intron | 25.0% |
! | AGGATTATGAAATGTAATGA+TGG | + | chr3_3:38203129-38203148 | Msa0451100:intron | 25.0% |
! | ATGATGAATTTGTAGATTTC+AGG | + | chr3_3:38203253-38203272 | Msa0451100:intron | 25.0% |
!!! | AATGGATTATGAAATGATGA+AGG | + | chr3_3:38203331-38203350 | Msa0451100:intron | 25.0% |
!!! | TTTTATTTAGGAGCTTTGTT+TGG | + | chr3_3:38203407-38203426 | Msa0451100:intron | 25.0% |
!!! | GTTCTAGTTACTGAAATTTT+AGG | + | chr3_3:38203523-38203542 | Msa0451100:intron | 25.0% |
!! | TCTCAGTAATGTACTAATTT+TGG | + | chr3_3:38203886-38203905 | Msa0451100:intron | 25.0% |
!! | CTCAGTAATGTACTAATTTT+GGG | + | chr3_3:38203887-38203906 | Msa0451100:intron | 25.0% |
!! | TCAGTAATGTACTAATTTTG+GGG | + | chr3_3:38203888-38203907 | Msa0451100:intron | 25.0% |
!!! | GGGTTTAAATTTTGAAAAGA+GGG | + | chr3_3:38203908-38203927 | Msa0451100:intron | 25.0% |
! | TGTAATGTGTATTCTCTATT+CGG | + | chr3_3:38204099-38204118 | Msa0451100:intron | 25.0% |
! | GAAAGATAAAAAATAGCTTC+AGG | - | chr3_3:38204253-38204272 | None:intergenic | 25.0% |
! | AATGTTACCGTTTATGTTTA+TGG | + | chr3_3:38204349-38204368 | Msa0451100:intron | 25.0% |
!! | TGCTTTAACTTAGTTAATGT+AGG | + | chr3_3:38204410-38204429 | Msa0451100:intron | 25.0% |
! | TTACAGATAAATGCACAATT+TGG | + | chr3_3:38204529-38204548 | Msa0451100:intron | 25.0% |
! | TAATGAAGGTAGAAATTATC+TGG | + | chr3_3:38204591-38204610 | Msa0451100:intron | 25.0% |
! | GACATACTATATAGATATAC+AGG | - | chr3_3:38204659-38204678 | None:intergenic | 25.0% |
!!! | CATTCTTCACATTGTTTTTT+GGG | - | chr3_3:38205192-38205211 | None:intergenic | 25.0% |
! | CAAAAAACAATGTGAAGAAT+GGG | + | chr3_3:38205191-38205210 | Msa0451100:CDS | 25.0% |
! | TTAAAGATTAATAACCTGCT+AGG | - | chr3_3:38205246-38205265 | None:intergenic | 25.0% |
! | TGCCCTTAAAAAATCTAAAA+GGG | - | chr3_3:38205514-38205533 | None:intergenic | 25.0% |
! | ATGCCCTTAAAAAATCTAAA+AGG | - | chr3_3:38205515-38205534 | None:intergenic | 25.0% |
!!! | TTTTTTAAGGGCATATCTTA+TGG | + | chr3_3:38205521-38205540 | Msa0451100:intron | 25.0% |
!!! | TTTTTAAGGGCATATCTTAT+GGG | + | chr3_3:38205522-38205541 | Msa0451100:intron | 25.0% |
!! | TTGTATTTGTTGGTTGAATT+TGG | - | chr3_3:38206253-38206272 | None:intergenic | 25.0% |
! | TCATACTTCTTTGTATTTGT+TGG | - | chr3_3:38206263-38206282 | None:intergenic | 25.0% |
! | GAAAACAATCAGCATTAATT+AGG | - | chr3_3:38206340-38206359 | None:intergenic | 25.0% |
!!! | AATTAATGCTGATTGTTTTC+AGG | + | chr3_3:38206340-38206359 | Msa0451100:intron | 25.0% |
! | TGGTAAATTGCTTATGTATA+TGG | - | chr3_3:38206660-38206679 | None:intergenic | 25.0% |
!!! | TGTCTTTTTGATTTGTGATT+TGG | + | chr3_3:38206809-38206828 | Msa0451100:intron | 25.0% |
! | ATATATTTGATGAGGATTGT+TGG | + | chr3_3:38207102-38207121 | Msa0451100:three_prime_UTR | 25.0% |
! | TATATTTGATGAGGATTGTT+GGG | + | chr3_3:38207103-38207122 | Msa0451100:three_prime_UTR | 25.0% |
! | AAGAGCATATATCATTGAAG+AGG | - | chr3_3:38202084-38202103 | None:intergenic | 30.0% |
TTCAATGATATATGCTCTTC+TGG | + | chr3_3:38202085-38202104 | Msa0451100:five_prime_UTR | 30.0% | |
TTGTTAAATAGGAATGGGAA+TGG | + | chr3_3:38202559-38202578 | Msa0451100:intron | 30.0% | |
TGTTAAATAGGAATGGGAAT+GGG | + | chr3_3:38202560-38202579 | Msa0451100:intron | 30.0% | |
!! | GATGATGAATTTGTTGATTG+CGG | + | chr3_3:38202872-38202891 | Msa0451100:intron | 30.0% |
!! | ATGATGAATTTGTTGATTGC+GGG | + | chr3_3:38202873-38202892 | Msa0451100:intron | 30.0% |
!!! | ATGTTCGTTGTTGTTGTTTT+TGG | + | chr3_3:38203072-38203091 | Msa0451100:intron | 30.0% |
GAGAAATTGTGATATGAGAA+TGG | + | chr3_3:38203177-38203196 | Msa0451100:intron | 30.0% | |
!! | AATTTGTAGATTTCAGGTTC+TGG | + | chr3_3:38203259-38203278 | Msa0451100:intron | 30.0% |
!!! | TTCTGGTTTCTGAAGTTTTA+TGG | + | chr3_3:38203276-38203295 | Msa0451100:intron | 30.0% |
! | TTGGTAGCTAAAATGTTGAA+TGG | + | chr3_3:38203426-38203445 | Msa0451100:intron | 30.0% |
AAATTCATCATCTCAAGAAG+GGG | - | chr3_3:38203492-38203511 | None:intergenic | 30.0% | |
CAAATTCATCATCTCAAGAA+GGG | - | chr3_3:38203493-38203512 | None:intergenic | 30.0% | |
ACAAATTCATCATCTCAAGA+AGG | - | chr3_3:38203494-38203513 | None:intergenic | 30.0% | |
!!! | TTTTGACTTTTTGATGTGAC+TGG | + | chr3_3:38203721-38203740 | Msa0451100:intron | 30.0% |
TCAGAAACAAAGTAGACAAA+CGG | - | chr3_3:38203792-38203811 | None:intergenic | 30.0% | |
!! | CTTTTACAGTTTTGATGTCA+TGG | + | chr3_3:38203861-38203880 | Msa0451100:intron | 30.0% |
!! | GGGGTTTAAATTTTGAAAAG+AGG | + | chr3_3:38203907-38203926 | Msa0451100:intron | 30.0% |
! | AGAACTCTACTTGATAGTAT+TGG | + | chr3_3:38204181-38204200 | Msa0451100:intron | 30.0% |
TCAATTCAATACTTGAGAGT+TGG | - | chr3_3:38204284-38204303 | None:intergenic | 30.0% | |
! | CTTTAGTTTCTGTTTAAGTG+AGG | + | chr3_3:38204319-38204338 | Msa0451100:intron | 30.0% |
CTGTCTACCATAAACATAAA+CGG | - | chr3_3:38204359-38204378 | None:intergenic | 30.0% | |
ATACAATGTAGTGAGTATCA+AGG | - | chr3_3:38204476-38204495 | None:intergenic | 30.0% | |
!! | CATTGTATTTTTCGATCTCA+AGG | + | chr3_3:38204488-38204507 | Msa0451100:intron | 30.0% |
AAGAGATTGCAGTTAAGTTA+TGG | - | chr3_3:38204563-38204582 | None:intergenic | 30.0% | |
! | TAAAATAGCTGATGTTTTGC+TGG | + | chr3_3:38204758-38204777 | Msa0451100:intron | 30.0% |
!!! | GACTTAAAAAGGTGTTTTTG+AGG | - | chr3_3:38204904-38204923 | None:intergenic | 30.0% |
!!! | TGATTTGGTAAACATTTTGC+AGG | + | chr3_3:38204981-38205000 | Msa0451100:intron | 30.0% |
!!! | CCATTCTTCACATTGTTTTT+TGG | - | chr3_3:38205193-38205212 | None:intergenic | 30.0% |
CCAAAAAACAATGTGAAGAA+TGG | + | chr3_3:38205190-38205209 | Msa0451100:CDS | 30.0% | |
GTACATTACATGCATTAAAC+AGG | - | chr3_3:38205298-38205317 | None:intergenic | 30.0% | |
AACAACCACACAATCAATTT+CGG | + | chr3_3:38205335-38205354 | Msa0451100:intron | 30.0% | |
! | TTAGCCTTTCTTATACAAGA+TGG | - | chr3_3:38205397-38205416 | None:intergenic | 30.0% |
ATCTTGTATAAGAAAGGCTA+AGG | + | chr3_3:38205396-38205415 | Msa0451100:intron | 30.0% | |
AATGTGTTCCTCTTCAAAAT+TGG | + | chr3_3:38205451-38205470 | Msa0451100:intron | 30.0% | |
!! | CTAAAACACCAATTTTGAAG+AGG | - | chr3_3:38205462-38205481 | None:intergenic | 30.0% |
!! | TTTTAAGGGCATATCTTATG+GGG | + | chr3_3:38205523-38205542 | Msa0451100:intron | 30.0% |
AGTATCACATTCAAAACGTA+CGG | - | chr3_3:38205744-38205763 | None:intergenic | 30.0% | |
GTTATTTGGATACACAAACT+GGG | - | chr3_3:38205894-38205913 | None:intergenic | 30.0% | |
! | TGTTATTTGGATACACAAAC+TGG | - | chr3_3:38205895-38205914 | None:intergenic | 30.0% |
! | ATACAAAGAAGTATGATCCT+TGG | + | chr3_3:38206267-38206286 | Msa0451100:intron | 30.0% |
AGACTTCTAATTCTTTCACA+TGG | - | chr3_3:38206303-38206322 | None:intergenic | 30.0% | |
AGGAATTCAACGATACATAA+AGG | - | chr3_3:38206584-38206603 | None:intergenic | 30.0% | |
AGAAACCTGTATGATTTAGT+GGG | - | chr3_3:38206781-38206800 | None:intergenic | 30.0% | |
TCATTCTCATCAAAAGCAAT+TGG | - | chr3_3:38206861-38206880 | None:intergenic | 30.0% | |
AGGATTGTTGGGTTAAATAT+TGG | + | chr3_3:38207114-38207133 | Msa0451100:three_prime_UTR | 30.0% | |
GGATTGTTGGGTTAAATATT+GGG | + | chr3_3:38207115-38207134 | Msa0451100:three_prime_UTR | 30.0% | |
GATCGGGAAAAAAAAAACGA+AGG | - | chr3_3:38202133-38202152 | None:intergenic | 35.0% | |
!! | ACATTACATTGGCTTTGTTG+TGG | - | chr3_3:38202264-38202283 | None:intergenic | 35.0% |
!! | AATTAAGCTGGATTTTGGGT+TGG | + | chr3_3:38202715-38202734 | Msa0451100:intron | 35.0% |
TTGAAGAACCTAAATTCGGA+CGG | - | chr3_3:38202800-38202819 | None:intergenic | 35.0% | |
ACAAATTCATCATCCCAAAC+AGG | - | chr3_3:38202866-38202885 | None:intergenic | 35.0% | |
GTGAAATACTGAAATGTGAG+TGG | + | chr3_3:38202994-38203013 | Msa0451100:intron | 35.0% | |
CAACGAACATAAGAACAAAG+AGG | - | chr3_3:38203062-38203081 | None:intergenic | 35.0% | |
!! | CTTCTGGTTGCTGAAATTTT+TGG | + | chr3_3:38203615-38203634 | Msa0451100:intron | 35.0% |
! | GAATTTGCTCTTTGTAAAGC+AGG | + | chr3_3:38203747-38203766 | Msa0451100:intron | 35.0% |
AAGACAATGTGCATCGTAAT+GGG | + | chr3_3:38203933-38203952 | Msa0451100:CDS | 35.0% | |
TTCATGCATGTTTAGCTGTT+TGG | + | chr3_3:38204059-38204078 | Msa0451100:intron | 35.0% | |
!! | CAGTGTCTTAGTCTTATATC+AGG | - | chr3_3:38204135-38204154 | None:intergenic | 35.0% |
GATATAAGACTAAGACACTG+AGG | + | chr3_3:38204135-38204154 | Msa0451100:intron | 35.0% | |
ATAGCTTCAGGTCATAATTC+TGG | - | chr3_3:38204241-38204260 | None:intergenic | 35.0% | |
GGTAAGTGTTATACTAACGA+TGG | - | chr3_3:38204438-38204457 | None:intergenic | 35.0% | |
!! | ATTTTTCGATCTCAAGGTTC+TGG | + | chr3_3:38204494-38204513 | Msa0451100:intron | 35.0% |
AGAAATTATCTGGTTGTCCA+TGG | + | chr3_3:38204601-38204620 | Msa0451100:intron | 35.0% | |
GCAAAGTTTCTTAAAGCTTG+TGG | + | chr3_3:38205003-38205022 | Msa0451100:CDS | 35.0% | |
ATGCTTTCCGAATTTCAGTA+GGG | - | chr3_3:38205044-38205063 | None:intergenic | 35.0% | |
! | TACTGAAATTCGGAAAGCAT+CGG | + | chr3_3:38205044-38205063 | Msa0451100:CDS | 35.0% |
TTGAATGGTTGGACATTAGT+TGG | - | chr3_3:38205159-38205178 | None:intergenic | 35.0% | |
!!! | TCACATTGTTTTTTGGGAGT+TGG | - | chr3_3:38205186-38205205 | None:intergenic | 35.0% |
TCTTATTACTATTAGCGCGA+TGG | + | chr3_3:38205367-38205386 | Msa0451100:intron | 35.0% | |
CTTATTACTATTAGCGCGAT+GGG | + | chr3_3:38205368-38205387 | Msa0451100:intron | 35.0% | |
GACACCATCTTGTATAAGAA+AGG | + | chr3_3:38205390-38205409 | Msa0451100:intron | 35.0% | |
! | GAAGAGGAACACATTTTCTT+AGG | - | chr3_3:38205446-38205465 | None:intergenic | 35.0% |
CAATGCACACAATACTCAAT+GGG | + | chr3_3:38205634-38205653 | Msa0451100:CDS | 35.0% | |
ATGGGAATATCATGACTCTT+CGG | + | chr3_3:38205652-38205671 | Msa0451100:CDS | 35.0% | |
CTTATTCATTTCAGTCCCAT+CGG | - | chr3_3:38205708-38205727 | None:intergenic | 35.0% | |
GATGGGACTGAAATGAATAA+GGG | + | chr3_3:38205707-38205726 | Msa0451100:CDS | 35.0% | |
ATGGGACTGAAATGAATAAG+GGG | + | chr3_3:38205708-38205727 | Msa0451100:CDS | 35.0% | |
TATTTCATCCTGTGAGTCAT+CGG | + | chr3_3:38205766-38205785 | Msa0451100:CDS | 35.0% | |
TCCCTTCAGATATCTTCATT+GGG | - | chr3_3:38205838-38205857 | None:intergenic | 35.0% | |
ATCCCTTCAGATATCTTCAT+TGG | - | chr3_3:38205839-38205858 | None:intergenic | 35.0% | |
!! | ACGGTAGATTCACTTTTATC+TGG | - | chr3_3:38206034-38206053 | None:intergenic | 35.0% |
AGATAAAAGTGAATCTACCG+TGG | + | chr3_3:38206033-38206052 | Msa0451100:CDS | 35.0% | |
GAGAAGAAAGAAAATGGAGA+TGG | + | chr3_3:38206105-38206124 | Msa0451100:CDS | 35.0% | |
AGAAGTTTGTACTTCTGATG+CGG | + | chr3_3:38206513-38206532 | Msa0451100:intron | 35.0% | |
! | GTAAGTGGTCTTTTGTCAAA+TGG | - | chr3_3:38206680-38206699 | None:intergenic | 35.0% |
GCACTCAATACAAAAGTAAG+TGG | - | chr3_3:38206695-38206714 | None:intergenic | 35.0% | |
!! | AGTCTCGCGATTTTGATAAT+TGG | + | chr3_3:38206754-38206773 | Msa0451100:intron | 35.0% |
GAGAAACCTGTATGATTTAG+TGG | - | chr3_3:38206782-38206801 | None:intergenic | 35.0% | |
!! | TGATTTGTGATTTGGTTCAC+AGG | + | chr3_3:38206817-38206836 | Msa0451100:intron | 35.0% |
GTTCACAGGAAAGATATTTG+CGG | + | chr3_3:38206831-38206850 | Msa0451100:intron | 35.0% | |
TACCTCATAGAGTAATGAGA+TGG | - | chr3_3:38206967-38206986 | None:intergenic | 35.0% | |
TTGGGTTAAATATTGGGCAT+TGG | + | chr3_3:38207121-38207140 | Msa0451100:three_prime_UTR | 35.0% | |
TGGGTTAAATATTGGGCATT+GGG | + | chr3_3:38207122-38207141 | Msa0451100:three_prime_UTR | 35.0% | |
GAACACGAAAGCAAGTGAAA+AGG | - | chr3_3:38202180-38202199 | None:intergenic | 40.0% | |
!! | TATGAAGCACTGACACTTCT+TGG | + | chr3_3:38202339-38202358 | Msa0451100:intron | 40.0% |
CACTGACACTTCTTGGATTA+GGG | + | chr3_3:38202346-38202365 | Msa0451100:intron | 40.0% | |
! | ACTGACACTTCTTGGATTAG+GGG | + | chr3_3:38202347-38202366 | Msa0451100:intron | 40.0% |
AATAGGAATGGGAATGGGAA+TGG | + | chr3_3:38202565-38202584 | Msa0451100:intron | 40.0% | |
GAATGGATCCTAAAACCTTG+AGG | - | chr3_3:38202774-38202793 | None:intergenic | 40.0% | |
TGAAGAACCTAAATTCGGAC+GGG | - | chr3_3:38202799-38202818 | None:intergenic | 40.0% | |
!! | AATTTGTTGATTGCGGGTTC+TGG | + | chr3_3:38202879-38202898 | Msa0451100:intron | 40.0% |
GTTGAGATGATCGCTTCATT+CGG | + | chr3_3:38203448-38203467 | Msa0451100:intron | 40.0% | |
TTCTGAGTATGTTCTGCTTC+TGG | + | chr3_3:38203599-38203618 | Msa0451100:intron | 40.0% | |
CTTTGTAAAGCAGGATGATG+TGG | + | chr3_3:38203756-38203775 | Msa0451100:intron | 40.0% | |
!! | TCTACTTTGTTTCTGACCGA+AGG | + | chr3_3:38203796-38203815 | Msa0451100:CDS | 40.0% |
GAAGACAATGTGCATCGTAA+TGG | + | chr3_3:38203932-38203951 | Msa0451100:CDS | 40.0% | |
!! | TCGTAATGGGAGAAGTTTTG+AGG | + | chr3_3:38203946-38203965 | Msa0451100:CDS | 40.0% |
!!! | TAATGGGAGAAGTTTTGAGG+AGG | + | chr3_3:38203949-38203968 | Msa0451100:CDS | 40.0% |
!!! | AATGGGAGAAGTTTTGAGGA+GGG | + | chr3_3:38203950-38203969 | Msa0451100:CDS | 40.0% |
ATGCATGTTTAGCTGTTTGG+AGG | + | chr3_3:38204062-38204081 | Msa0451100:intron | 40.0% | |
GTCTTATATCAGGAGCGAAA+TGG | - | chr3_3:38204125-38204144 | None:intergenic | 40.0% | |
CGAAGATGTCTCATTGAGAA+TGG | + | chr3_3:38204215-38204234 | Msa0451100:intron | 40.0% | |
! | CATTGAAGAAGTAAGCACTG+TGG | - | chr3_3:38204382-38204401 | None:intergenic | 40.0% |
TCAAGGCTTTCTTAGTATCG+TGG | - | chr3_3:38204459-38204478 | None:intergenic | 40.0% | |
ATACACCACAAATCTTAGCC+AGG | - | chr3_3:38204633-38204652 | None:intergenic | 40.0% | |
TACAAGCATATGCATGTCCT+GGG | + | chr3_3:38204686-38204705 | Msa0451100:intron | 40.0% | |
! | AATAGCTGATGTTTTGCTGG+TGG | + | chr3_3:38204761-38204780 | Msa0451100:intron | 40.0% |
CAAGTACCCCTACTGAAATT+CGG | + | chr3_3:38205034-38205053 | Msa0451100:CDS | 40.0% | |
TGCTTTCCGAATTTCAGTAG+GGG | - | chr3_3:38205043-38205062 | None:intergenic | 40.0% | |
GATGCTTTCCGAATTTCAGT+AGG | - | chr3_3:38205045-38205064 | None:intergenic | 40.0% | |
CCAGAATCGTTACTACATGA+AGG | - | chr3_3:38205087-38205106 | None:intergenic | 40.0% | |
CCTTCATGTAGTAACGATTC+TGG | + | chr3_3:38205084-38205103 | Msa0451100:CDS | 40.0% | |
AGAAGCCAAGAACGAAACTT+TGG | - | chr3_3:38205114-38205133 | None:intergenic | 40.0% | |
!!! | CATTGTTTTTTGGGAGTTGG+CGG | - | chr3_3:38205183-38205202 | None:intergenic | 40.0% |
TTAATAACCTGCTAGGTGTG+TGG | - | chr3_3:38205239-38205258 | None:intergenic | 40.0% | |
AACCACACAATCAATTTCGG+TGG | + | chr3_3:38205338-38205357 | Msa0451100:intron | 40.0% | |
ATCCACCGAAATTGATTGTG+TGG | - | chr3_3:38205343-38205362 | None:intergenic | 40.0% | |
! | CCATTGAGTATTGTGTGCAT+TGG | - | chr3_3:38205636-38205655 | None:intergenic | 40.0% |
CCAATGCACACAATACTCAA+TGG | + | chr3_3:38205633-38205652 | Msa0451100:CDS | 40.0% | |
GAATATCATGACTCTTCGGA+AGG | + | chr3_3:38205656-38205675 | Msa0451100:CDS | 40.0% | |
CGATGGGACTGAAATGAATA+AGG | + | chr3_3:38205706-38205725 | Msa0451100:CDS | 40.0% | |
ATCTTCATTGGGGTAGGATT+TGG | - | chr3_3:38205827-38205846 | None:intergenic | 40.0% | |
TCAGATATCTTCATTGGGGT+AGG | - | chr3_3:38205833-38205852 | None:intergenic | 40.0% | |
ACCCCAATGAAGATATCTGA+AGG | + | chr3_3:38205833-38205852 | Msa0451100:CDS | 40.0% | |
CCCTTCAGATATCTTCATTG+GGG | - | chr3_3:38205837-38205856 | None:intergenic | 40.0% | |
CCCCAATGAAGATATCTGAA+GGG | + | chr3_3:38205834-38205853 | Msa0451100:CDS | 40.0% | |
TTAACAGGGTAAACAGTTCC+AGG | - | chr3_3:38205869-38205888 | None:intergenic | 40.0% | |
ACACAAACTGGGACTTAACA+GGG | - | chr3_3:38205883-38205902 | None:intergenic | 40.0% | |
TACACAAACTGGGACTTAAC+AGG | - | chr3_3:38205884-38205903 | None:intergenic | 40.0% | |
GTGTATCCAAATAACAGCCT+AGG | + | chr3_3:38205899-38205918 | Msa0451100:CDS | 40.0% | |
! | CTCTAAGAGCAAGATACTTG+AGG | + | chr3_3:38205931-38205950 | Msa0451100:CDS | 40.0% |
!! | GAAGCCTGCATCTGTTATTT+TGG | + | chr3_3:38206078-38206097 | Msa0451100:CDS | 40.0% |
TCCTCCAAAATAACAGATGC+AGG | - | chr3_3:38206085-38206104 | None:intergenic | 40.0% | |
GGAGGAGAGAAGAAAGAAAA+TGG | + | chr3_3:38206099-38206118 | Msa0451100:CDS | 40.0% | |
CACATGGAAAATAGCTACCA+AGG | - | chr3_3:38206287-38206306 | None:intergenic | 40.0% | |
AGGATACTATCATCGCTCAA+AGG | + | chr3_3:38206423-38206442 | Msa0451100:CDS | 40.0% | |
GCAAACAACAGTGCTTTCAT+AGG | - | chr3_3:38206453-38206472 | None:intergenic | 40.0% | |
TTCAACGTCATGCTAAACTC+AGG | - | chr3_3:38206604-38206623 | None:intergenic | 40.0% | |
TTGGTCCCACTAAATCATAC+AGG | + | chr3_3:38206773-38206792 | Msa0451100:intron | 40.0% | |
GTCCATCTCATTACTCTATG+AGG | + | chr3_3:38206962-38206981 | Msa0451100:three_prime_UTR | 40.0% | |
!! | AATATTGGGCATTGGGAGAT+CGG | + | chr3_3:38207129-38207148 | Msa0451100:three_prime_UTR | 40.0% |
CTGACCTACCTTCTTCACTT+GGG | + | chr3_3:38202057-38202076 | Msa0451100:five_prime_UTR | 45.0% | |
! | GCACTGACACTTCTTGGATT+AGG | + | chr3_3:38202345-38202364 | Msa0451100:intron | 45.0% |
CAAAGTCACACACACTGACA+CGG | - | chr3_3:38202482-38202501 | None:intergenic | 45.0% | |
!!! | TAAGCTGGATTTTGGGTTGG+TGG | + | chr3_3:38202718-38202737 | Msa0451100:intron | 45.0% |
!!! | GGATTTTGGGTTGGTGGTAT+TGG | + | chr3_3:38202724-38202743 | Msa0451100:intron | 45.0% |
TGGATCCTAAAACCTTGAGG+AGG | - | chr3_3:38202771-38202790 | None:intergenic | 45.0% | |
GAAGAACCTAAATTCGGACG+GGG | - | chr3_3:38202798-38202817 | None:intergenic | 45.0% | |
AGGGATCACAGAGTGATGAT+AGG | + | chr3_3:38203969-38203988 | Msa0451100:CDS | 45.0% | |
TGATAGGCAGCTTAAAGACG+AGG | + | chr3_3:38203985-38204004 | Msa0451100:CDS | 45.0% | |
! | ATCTCAAGGTTCTGGCAGTA+GGG | + | chr3_3:38204502-38204521 | Msa0451100:intron | 45.0% |
GCATTCCTGGCTAAGATTTG+TGG | + | chr3_3:38204625-38204644 | Msa0451100:intron | 45.0% | |
CTACAAGCATATGCATGTCC+TGG | + | chr3_3:38204685-38204704 | Msa0451100:intron | 45.0% | |
!! | TTCAGTAGGGGTACTTGCTA+TGG | - | chr3_3:38205031-38205050 | None:intergenic | 45.0% |
GTCCTCCAAAGTTTCGTTCT+TGG | + | chr3_3:38205106-38205125 | Msa0451100:CDS | 45.0% | |
AGCCAAGAACGAAACTTTGG+AGG | - | chr3_3:38205111-38205130 | None:intergenic | 45.0% | |
ATGACTCTTCGGAAGGAAGT+GGG | + | chr3_3:38205663-38205682 | Msa0451100:CDS | 45.0% | |
TTCATTTCAGTCCCATCGGT+CGG | - | chr3_3:38205704-38205723 | None:intergenic | 45.0% | |
GGACTGAAATGAATAAGGGG+AGG | + | chr3_3:38205711-38205730 | Msa0451100:CDS | 45.0% | |
TCCAAATAACAGCCTAGGTG+AGG | + | chr3_3:38205904-38205923 | Msa0451100:CDS | 45.0% | |
TCCTCACCTAGGCTGTTATT+TGG | - | chr3_3:38205908-38205927 | None:intergenic | 45.0% | |
TCTTAGAGACATCCTCACCT+AGG | - | chr3_3:38205919-38205938 | None:intergenic | 45.0% | |
GAGCAAGATACTTGAGGAAG+AGG | + | chr3_3:38205937-38205956 | Msa0451100:CDS | 45.0% | |
ATGTTCCTGCGCAAGATTCA+AGG | + | chr3_3:38205963-38205982 | Msa0451100:CDS | 45.0% | |
ATCTTCCTTGAATCTTGCGC+AGG | - | chr3_3:38205971-38205990 | None:intergenic | 45.0% | |
AGTGAATCTACCGTGGAAGA+AGG | + | chr3_3:38206040-38206059 | Msa0451100:CDS | 45.0% | |
AGAAGACAAGCCTTCTTCCA+CGG | - | chr3_3:38206053-38206072 | None:intergenic | 45.0% | |
TGGAAGAAGGCTTGTCTTCT+TGG | + | chr3_3:38206053-38206072 | Msa0451100:CDS | 45.0% | |
!!! | GCCTGCATCTGTTATTTTGG+AGG | + | chr3_3:38206081-38206100 | Msa0451100:CDS | 45.0% |
TGCTGCACATTGGATTGAAG+AGG | + | chr3_3:38206180-38206199 | Msa0451100:CDS | 45.0% | |
TTCTCCAACCTCTCTTCGAA+CGG | - | chr3_3:38206392-38206411 | None:intergenic | 45.0% | |
!! | GTTGGAGAAGGCATTATCTG+AGG | + | chr3_3:38206403-38206422 | Msa0451100:CDS | 45.0% |
TAGATATCAACACGACGCCA+CGG | - | chr3_3:38206934-38206953 | None:intergenic | 45.0% | |
! | GGCGTCGTGTTGATATCTAT+AGG | + | chr3_3:38206935-38206954 | Msa0451100:exon | 45.0% |
AGCACTGCATTGGGACTTAA+TGG | - | chr3_3:38207010-38207029 | None:intergenic | 45.0% | |
CAAGCAATCAGCACTGCATT+GGG | - | chr3_3:38207019-38207038 | None:intergenic | 45.0% | |
CCAAGTGAAGAAGGTAGGTC+AGG | - | chr3_3:38202059-38202078 | None:intergenic | 50.0% | |
CCTGACCTACCTTCTTCACT+TGG | + | chr3_3:38202056-38202075 | Msa0451100:five_prime_UTR | 50.0% | |
AGGACCCAAGTGAAGAAGGT+AGG | - | chr3_3:38202064-38202083 | None:intergenic | 50.0% | |
GAAGAGGACCCAAGTGAAGA+AGG | - | chr3_3:38202068-38202087 | None:intergenic | 50.0% | |
!! | TTGGGTTGGTGGTATTGGCT+TGG | + | chr3_3:38202729-38202748 | Msa0451100:intron | 50.0% |
!! | TGGGTTGGTGGTATTGGCTT+GGG | + | chr3_3:38202730-38202749 | Msa0451100:intron | 50.0% |
! | GTGCTCCTCCTCAAGGTTTT+AGG | + | chr3_3:38202763-38202782 | Msa0451100:intron | 50.0% |
CTAAATTCGGACGGGGAGAA+TGG | - | chr3_3:38202791-38202810 | None:intergenic | 50.0% | |
CATTCTCCCCGTCCGAATTT+AGG | + | chr3_3:38202789-38202808 | Msa0451100:intron | 50.0% | |
! | GATCTCAAGGTTCTGGCAGT+AGG | + | chr3_3:38204501-38204520 | Msa0451100:intron | 50.0% |
TCTTAGCCAGGAATGCACCA+TGG | - | chr3_3:38204621-38204640 | None:intergenic | 50.0% | |
AAAAGTTTGTGAGCCAGCCC+AGG | - | chr3_3:38204706-38204725 | None:intergenic | 50.0% | |
! | GCTGATGTTTTGCTGGTGGA+AGG | + | chr3_3:38204765-38204784 | Msa0451100:intron | 50.0% |
!! | GAGTTGGCGGATTGAATGGT+TGG | - | chr3_3:38205170-38205189 | None:intergenic | 50.0% |
!! | TTGGGAGTTGGCGGATTGAA+TGG | - | chr3_3:38205174-38205193 | None:intergenic | 50.0% |
CATGACTCTTCGGAAGGAAG+TGG | + | chr3_3:38205662-38205681 | Msa0451100:CDS | 50.0% | |
!! | TCCTGTGAGTCATCGGCTTA+TGG | + | chr3_3:38205773-38205792 | Msa0451100:CDS | 50.0% |
ACCATAAGCCGATGACTCAC+AGG | - | chr3_3:38205777-38205796 | None:intergenic | 50.0% | |
!! | TGTGAGTCATCGGCTTATGG+TGG | + | chr3_3:38205776-38205795 | Msa0451100:CDS | 50.0% |
!! | AGTCATCGGCTTATGGTGGA+TGG | + | chr3_3:38205780-38205799 | Msa0451100:CDS | 50.0% |
TCTGAAGGGATGCAAACTCC+TGG | + | chr3_3:38205848-38205867 | Msa0451100:CDS | 50.0% | |
! | CCTATCGACAGGAGTTTTGC+GGG | - | chr3_3:38206143-38206162 | None:intergenic | 50.0% |
! | GCCTATCGACAGGAGTTTTG+CGG | - | chr3_3:38206144-38206163 | None:intergenic | 50.0% |
CTGTCGATAGGCCCATCATT+GGG | + | chr3_3:38206152-38206171 | Msa0451100:CDS | 50.0% | |
GCAGCAACCATCCCAATGAT+GGG | - | chr3_3:38206166-38206185 | None:intergenic | 50.0% | |
TGCAGCAACCATCCCAATGA+TGG | - | chr3_3:38206167-38206186 | None:intergenic | 50.0% | |
TTGGGATGGTTGCTGCACAT+TGG | + | chr3_3:38206170-38206189 | Msa0451100:CDS | 50.0% | |
TTCAGGACCAGAAAGTGAGC+TGG | + | chr3_3:38206357-38206376 | Msa0451100:intron | 50.0% | |
TAGCATGCCAGCTCACTTTC+TGG | - | chr3_3:38206367-38206386 | None:intergenic | 50.0% | |
GTTCGAAGAGAGGTTGGAGA+AGG | + | chr3_3:38206391-38206410 | Msa0451100:CDS | 50.0% | |
CCAAGCAATCAGCACTGCAT+TGG | - | chr3_3:38207020-38207039 | None:intergenic | 50.0% | |
!! | CCAATGCAGTGCTGATTGCT+TGG | + | chr3_3:38207017-38207036 | Msa0451100:three_prime_UTR | 50.0% |
! | GCTTTGTTGTGGTGCCGAGA+CGG | - | chr3_3:38202253-38202272 | None:intergenic | 55.0% |
ACACGGCACAGACACTGACA+CGG | - | chr3_3:38202465-38202484 | None:intergenic | 55.0% | |
!! | GTGGTATTGGCTTGGGACCT+GGG | + | chr3_3:38202737-38202756 | Msa0451100:intron | 55.0% |
GGTTGTCCATGGTGCATTCC+TGG | + | chr3_3:38204612-38204631 | Msa0451100:intron | 55.0% | |
AGCATATGCATGTCCTGGGC+TGG | + | chr3_3:38204690-38204709 | Msa0451100:intron | 55.0% | |
GTTCAGACCACACACCTAGC+AGG | + | chr3_3:38205229-38205248 | Msa0451100:CDS | 55.0% | |
TCTTCGGAAGGAAGTGGGCA+GGG | + | chr3_3:38205668-38205687 | Msa0451100:CDS | 55.0% | |
GGAGCTATCATCCGACCGAT+GGG | + | chr3_3:38205690-38205709 | Msa0451100:CDS | 55.0% | |
CCCGCAAAACTCCTGTCGAT+AGG | + | chr3_3:38206140-38206159 | Msa0451100:CDS | 55.0% | |
!! | CCAATGATGGGCCTATCGAC+AGG | - | chr3_3:38206154-38206173 | None:intergenic | 55.0% |
CCTGTCGATAGGCCCATCAT+TGG | + | chr3_3:38206151-38206170 | Msa0451100:CDS | 55.0% | |
CGATAGGCCCATCATTGGGA+TGG | + | chr3_3:38206156-38206175 | Msa0451100:CDS | 55.0% | |
CTGATGCTCCTCCTCCTAAG+TGG | + | chr3_3:38206209-38206228 | Msa0451100:CDS | 55.0% | |
ATGCTCCTCCTCCTAAGTGG+TGG | + | chr3_3:38206212-38206231 | Msa0451100:CDS | 55.0% | |
TGCTCCTCCTCCTAAGTGGT+GGG | + | chr3_3:38206213-38206232 | Msa0451100:CDS | 55.0% | |
TTGCCATCCCACCACTTAGG+AGG | - | chr3_3:38206223-38206242 | None:intergenic | 55.0% | |
CCATTGCCATCCCACCACTT+AGG | - | chr3_3:38206226-38206245 | None:intergenic | 55.0% | |
! | CCTAAGTGGTGGGATGGCAA+TGG | + | chr3_3:38206223-38206242 | Msa0451100:CDS | 55.0% |
ATGCTACGCCGTTCGAAGAG+AGG | + | chr3_3:38206381-38206400 | Msa0451100:CDS | 55.0% | |
TACGCCGTTCGAAGAGAGGT+TGG | + | chr3_3:38206385-38206404 | Msa0451100:CDS | 55.0% | |
TTCATCCCATCCACAGTCCG+TGG | + | chr3_3:38206914-38206933 | Msa0451100:CDS | 55.0% | |
! | GGGGTGTCTCAGTGTCAGAC+AGG | + | chr3_3:38202366-38202385 | Msa0451100:intron | 60.0% |
!! | GGTGGTATTGGCTTGGGACC+TGG | + | chr3_3:38202736-38202755 | Msa0451100:intron | 60.0% |
! | TTGAGGAGGAGCACACTCCC+AGG | - | chr3_3:38202757-38202776 | None:intergenic | 60.0% |
! | TGGGAGTGTGCTCCTCCTCA+AGG | + | chr3_3:38202756-38202775 | Msa0451100:intron | 60.0% |
CTCTTCGGAAGGAAGTGGGC+AGG | + | chr3_3:38205667-38205686 | Msa0451100:CDS | 60.0% | |
CTTCGGAAGGAAGTGGGCAG+GGG | + | chr3_3:38205669-38205688 | Msa0451100:CDS | 60.0% | |
GGGAGCTATCATCCGACCGA+TGG | + | chr3_3:38205689-38205708 | Msa0451100:CDS | 60.0% | |
CCATCCCACCACTTAGGAGG+AGG | - | chr3_3:38206220-38206239 | None:intergenic | 60.0% | |
! | CCTCCTCCTAAGTGGTGGGA+TGG | + | chr3_3:38206217-38206236 | Msa0451100:CDS | 60.0% |
! | CAGCGGCGGATTTAGCGTGG+TGG | - | chr3_3:38202216-38202235 | None:intergenic | 65.0% |
! | TGGCAGCGGCGGATTTAGCG+TGG | - | chr3_3:38202219-38202238 | None:intergenic | 65.0% |
! | GTTGTGGTGCCGAGACGGCA+CGG | - | chr3_3:38202248-38202267 | None:intergenic | 65.0% |
! | CGACGCCACGGACTGTGGAT+GGG | - | chr3_3:38206922-38206941 | None:intergenic | 65.0% |
! | ACGACGCCACGGACTGTGGA+TGG | - | chr3_3:38206923-38206942 | None:intergenic | 65.0% |
! | CAACACGACGCCACGGACTG+TGG | - | chr3_3:38206927-38206946 | None:intergenic | 65.0% |
! | GTGGTGCCGAGACGGCACGG+CGG | - | chr3_3:38202245-38202264 | None:intergenic | 75.0% |
! | CCACCGCCGCCGTGCCGTCT+CGG | + | chr3_3:38202236-38202255 | Msa0451100:CDS | 80.0% |
! | GTGCCGAGACGGCACGGCGG+CGG | - | chr3_3:38202242-38202261 | None:intergenic | 80.0% |
! | CACGGCGGCGGTGGCAGCGG+CGG | - | chr3_3:38202230-38202249 | None:intergenic | 85.0% |
! | CGGCACGGCGGCGGTGGCAG+CGG | - | chr3_3:38202233-38202252 | None:intergenic | 85.0% |
! | CCGAGACGGCACGGCGGCGG+TGG | - | chr3_3:38202239-38202258 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 38201952 | 38207152 | 38201952 | ID=Msa0451100;Name=Msa0451100 |
chr3_3 | mRNA | 38201952 | 38207152 | 38201952 | ID=Msa0451100-mRNA-1;Parent=Msa0451100;Name=Msa0451100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217|1|1|1|1|1|7|205|442 |
chr3_3 | exon | 38201952 | 38202276 | 38201952 | ID=Msa0451100-mRNA-1:exon:6872;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38203769 | 38203817 | 38203769 | ID=Msa0451100-mRNA-1:exon:6873;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38203927 | 38204006 | 38203927 | ID=Msa0451100-mRNA-1:exon:6874;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38205003 | 38205250 | 38205003 | ID=Msa0451100-mRNA-1:exon:6875;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38205625 | 38206276 | 38205625 | ID=Msa0451100-mRNA-1:exon:6876;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38206362 | 38206444 | 38206362 | ID=Msa0451100-mRNA-1:exon:6877;Parent=Msa0451100-mRNA-1 |
chr3_3 | exon | 38206839 | 38207152 | 38206839 | ID=Msa0451100-mRNA-1:exon:6878;Parent=Msa0451100-mRNA-1 |
chr3_3 | five_prime_UTR | 38201952 | 38202168 | 38201952 | ID=Msa0451100-mRNA-1:five_prime_utr;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38202169 | 38202276 | 38202169 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38203769 | 38203817 | 38203769 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38203927 | 38204006 | 38203927 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38205003 | 38205250 | 38205003 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38205625 | 38206276 | 38205625 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38206362 | 38206444 | 38206362 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | CDS | 38206839 | 38206947 | 38206839 | ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1 |
chr3_3 | three_prime_UTR | 38206948 | 38207152 | 38206948 | ID=Msa0451100-mRNA-1:three_prime_utr;Parent=Msa0451100-mRNA-1 |
Gene Sequence |
Protein sequence |