AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0451100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451100 MtrunA17_Chr3g0095751 93.905 443 22 5 1 442 25 463 0.0 842
Msa0451100 MtrunA17_Chr5g0442731 45.474 464 197 11 1 422 24 473 2.07e-115 346
Msa0451100 MtrunA17_Chr1g0183391 39.683 126 62 4 284 401 317 436 3.68e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0451100 AT1G06660.1 38.477 486 220 17 1 441 29 480 8.62e-73 237
Msa0451100 AT2G30820.2 36.538 468 211 15 1 433 1 417 4.01e-61 204
Msa0451100 AT2G30820.1 36.538 468 211 15 1 433 1 417 4.01e-61 204

Find 148 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCACCTAGGCTGTTATT+TGG 0.189762 3_3:-38205905 None:intergenic
GTCCTCCAAAGTTTCGTTCT+TGG 0.196344 3_3:+38205106 Msa0451100:CDS
AGGATTGTTGGGTTAAATAT+TGG 0.204732 3_3:+38207114 Msa0451100:three_prime_UTR
GAAGCCTGCATCTGTTATTT+TGG 0.212458 3_3:+38206078 Msa0451100:CDS
TAGCATGCCAGCTCACTTTC+TGG 0.229927 3_3:-38206364 None:intergenic
TTGTATTTGTTGGTTGAATT+TGG 0.246872 3_3:-38206250 None:intergenic
CGGCACGGCGGCGGTGGCAG+CGG 0.253515 3_3:-38202230 None:intergenic
TGGAAGAAGGCTTGTCTTCT+TGG 0.254792 3_3:+38206053 Msa0451100:CDS
CGATGGGACTGAAATGAATA+AGG 0.261654 3_3:+38205706 Msa0451100:CDS
GGAGGAGAGAAGAAAGAAAA+TGG 0.286742 3_3:+38206099 Msa0451100:CDS
TTCAATGATATATGCTCTTC+TGG 0.292753 3_3:+38202085 Msa0451100:five_prime_UTR
ATCTTCATTGGGGTAGGATT+TGG 0.293500 3_3:-38205824 None:intergenic
TCCTGTGAGTCATCGGCTTA+TGG 0.325210 3_3:+38205773 Msa0451100:CDS
AGCACTGCATTGGGACTTAA+TGG 0.325533 3_3:-38207007 None:intergenic
TCATACTTCTTTGTATTTGT+TGG 0.327303 3_3:-38206260 None:intergenic
GGATTGTTGGGTTAAATATT+GGG 0.336604 3_3:+38207115 Msa0451100:three_prime_UTR
CCACCGCCGCCGTGCCGTCT+CGG 0.337432 3_3:+38202236 Msa0451100:CDS
TACACAAACTGGGACTTAAC+AGG 0.339806 3_3:-38205881 None:intergenic
ATCCCTTCAGATATCTTCAT+TGG 0.349727 3_3:-38205836 None:intergenic
CCTGACCTACCTTCTTCACT+TGG 0.366149 3_3:+38202056 Msa0451100:five_prime_UTR
CCTTCATGTAGTAACGATTC+TGG 0.376618 3_3:+38205084 Msa0451100:CDS
TTGAATGGTTGGACATTAGT+TGG 0.377570 3_3:-38205156 None:intergenic
TGTTATTTGGATACACAAAC+TGG 0.390899 3_3:-38205892 None:intergenic
TCCCTTCAGATATCTTCATT+GGG 0.406133 3_3:-38205835 None:intergenic
TGGGTTAAATATTGGGCATT+GGG 0.410553 3_3:+38207122 Msa0451100:three_prime_UTR
CCGAGACGGCACGGCGGCGG+TGG 0.413377 3_3:-38202236 None:intergenic
CACGGCGGCGGTGGCAGCGG+CGG 0.414398 3_3:-38202227 None:intergenic
TCATTCTCATCAAAAGCAAT+TGG 0.422122 3_3:-38206858 None:intergenic
TTGGGAGTTGGCGGATTGAA+TGG 0.422674 3_3:-38205171 None:intergenic
CAAGTACCCCTACTGAAATT+CGG 0.424717 3_3:+38205034 Msa0451100:CDS
TGCAGCAACCATCCCAATGA+TGG 0.431713 3_3:-38206164 None:intergenic
TATATTTGATGAGGATTGTT+GGG 0.432129 3_3:+38207103 Msa0451100:three_prime_UTR
AAGACAATGTGCATCGTAAT+GGG 0.432569 3_3:+38203933 Msa0451100:CDS
TTGGGTTAAATATTGGGCAT+TGG 0.435150 3_3:+38207121 Msa0451100:three_prime_UTR
ATGTTCCTGCGCAAGATTCA+AGG 0.435844 3_3:+38205963 Msa0451100:CDS
AGGGATCACAGAGTGATGAT+AGG 0.453830 3_3:+38203969 Msa0451100:CDS
CCTGTCGATAGGCCCATCAT+TGG 0.456758 3_3:+38206151 Msa0451100:CDS
CCAAGCAATCAGCACTGCAT+TGG 0.458893 3_3:-38207017 None:intergenic
CAAGCAATCAGCACTGCATT+GGG 0.465777 3_3:-38207016 None:intergenic
TTAACAGGGTAAACAGTTCC+AGG 0.469267 3_3:-38205866 None:intergenic
GAGCAAGATACTTGAGGAAG+AGG 0.471401 3_3:+38205937 Msa0451100:CDS
GAAGACAATGTGCATCGTAA+TGG 0.477516 3_3:+38203932 Msa0451100:CDS
GTGCCGAGACGGCACGGCGG+CGG 0.482484 3_3:-38202239 None:intergenic
AGAAGCCAAGAACGAAACTT+TGG 0.484007 3_3:-38205111 None:intergenic
AATATTGGGCATTGGGAGAT+CGG 0.485654 3_3:+38207129 Msa0451100:three_prime_UTR
TCCTCCAAAATAACAGATGC+AGG 0.487575 3_3:-38206082 None:intergenic
GATGGGACTGAAATGAATAA+GGG 0.488622 3_3:+38205707 Msa0451100:CDS
TCAAATATATACAATACAAG+TGG 0.489054 3_3:-38207089 None:intergenic
ACGACGCCACGGACTGTGGA+TGG 0.492778 3_3:-38206920 None:intergenic
ATGGGAATATCATGACTCTT+CGG 0.494202 3_3:+38205652 Msa0451100:CDS
CCAATGCACACAATACTCAA+TGG 0.495131 3_3:+38205633 Msa0451100:CDS
CCAAGTGAAGAAGGTAGGTC+AGG 0.497945 3_3:-38202056 None:intergenic
GTCCATCTCATTACTCTATG+AGG 0.502624 3_3:+38206962 Msa0451100:three_prime_UTR
GCAAAGTTTCTTAAAGCTTG+TGG 0.503956 3_3:+38205003 Msa0451100:CDS
ATCTTCCTTGAATCTTGCGC+AGG 0.504663 3_3:-38205968 None:intergenic
CAATGCACACAATACTCAAT+GGG 0.505196 3_3:+38205634 Msa0451100:CDS
TTCAGTAGGGGTACTTGCTA+TGG 0.505440 3_3:-38205028 None:intergenic
CTCTTCGGAAGGAAGTGGGC+AGG 0.505993 3_3:+38205667 Msa0451100:CDS
GAAGAGGACCCAAGTGAAGA+AGG 0.507890 3_3:-38202065 None:intergenic
CCAATGATGGGCCTATCGAC+AGG 0.508176 3_3:-38206151 None:intergenic
ATATATTTGATGAGGATTGT+TGG 0.511343 3_3:+38207102 Msa0451100:three_prime_UTR
CCAATGCAGTGCTGATTGCT+TGG 0.511818 3_3:+38207017 Msa0451100:three_prime_UTR
CCATTGAGTATTGTGTGCAT+TGG 0.512181 3_3:-38205633 None:intergenic
CTTCGGAAGGAAGTGGGCAG+GGG 0.512249 3_3:+38205669 Msa0451100:CDS
TGCTCCTCCTCCTAAGTGGT+GGG 0.512880 3_3:+38206213 Msa0451100:CDS
CATGACTCTTCGGAAGGAAG+TGG 0.514139 3_3:+38205662 Msa0451100:CDS
GATGCTTTCCGAATTTCAGT+AGG 0.514555 3_3:-38205042 None:intergenic
CTGTCGATAGGCCCATCATT+GGG 0.516223 3_3:+38206152 Msa0451100:CDS
CAACACGACGCCACGGACTG+TGG 0.521235 3_3:-38206924 None:intergenic
TCTTCGGAAGGAAGTGGGCA+GGG 0.526061 3_3:+38205668 Msa0451100:CDS
TATTTCATCCTGTGAGTCAT+CGG 0.528657 3_3:+38205766 Msa0451100:CDS
ATGCTCCTCCTCCTAAGTGG+TGG 0.530708 3_3:+38206212 Msa0451100:CDS
GAGAAGAAAGAAAATGGAGA+TGG 0.532138 3_3:+38206105 Msa0451100:CDS
TTAAAGATTAATAACCTGCT+AGG 0.536769 3_3:-38205243 None:intergenic
AGTGAATCTACCGTGGAAGA+AGG 0.537717 3_3:+38206040 Msa0451100:CDS
TCTACTTTGTTTCTGACCGA+AGG 0.540444 3_3:+38203796 Msa0451100:CDS
GTTCACAGGAAAGATATTTG+CGG 0.540461 3_3:+38206831 Msa0451100:intron
CTTATTCATTTCAGTCCCAT+CGG 0.540593 3_3:-38205705 None:intergenic
CTGACCTACCTTCTTCACTT+GGG 0.541465 3_3:+38202057 Msa0451100:five_prime_UTR
GAGTTGGCGGATTGAATGGT+TGG 0.541865 3_3:-38205167 None:intergenic
GTTCAGACCACACACCTAGC+AGG 0.546465 3_3:+38205229 Msa0451100:CDS
TCAGATATCTTCATTGGGGT+AGG 0.551648 3_3:-38205830 None:intergenic
TTCATTTCAGTCCCATCGGT+CGG 0.552448 3_3:-38205701 None:intergenic
ATGCTTTCCGAATTTCAGTA+GGG 0.554306 3_3:-38205041 None:intergenic
GGGAGCTATCATCCGACCGA+TGG 0.556557 3_3:+38205689 Msa0451100:CDS
ACATTACATTGGCTTTGTTG+TGG 0.556918 3_3:-38202261 None:intergenic
GAACACGAAAGCAAGTGAAA+AGG 0.559259 3_3:-38202177 None:intergenic
TTCAGGACCAGAAAGTGAGC+TGG 0.559748 3_3:+38206357 Msa0451100:intron
ACCATAAGCCGATGACTCAC+AGG 0.559884 3_3:-38205774 None:intergenic
CCTCCTCCTAAGTGGTGGGA+TGG 0.560739 3_3:+38206217 Msa0451100:CDS
CCATTGCCATCCCACCACTT+AGG 0.560739 3_3:-38206223 None:intergenic
TCTGAAGGGATGCAAACTCC+TGG 0.562862 3_3:+38205848 Msa0451100:CDS
GTTGTGGTGCCGAGACGGCA+CGG 0.566404 3_3:-38202245 None:intergenic
TCAGAAACAAAGTAGACAAA+CGG 0.567517 3_3:-38203789 None:intergenic
TGTATTGTATATATTTGATG+AGG 0.567911 3_3:+38207094 Msa0451100:three_prime_UTR
CGACGCCACGGACTGTGGAT+GGG 0.567931 3_3:-38206919 None:intergenic
CCTAAGTGGTGGGATGGCAA+TGG 0.569676 3_3:+38206223 Msa0451100:CDS
GTGTATCCAAATAACAGCCT+AGG 0.571499 3_3:+38205899 Msa0451100:CDS
ATGCTACGCCGTTCGAAGAG+AGG 0.575521 3_3:+38206381 Msa0451100:CDS
CAAATATATACAATACAAGT+GGG 0.576971 3_3:-38207088 None:intergenic
ACCCCAATGAAGATATCTGA+AGG 0.577653 3_3:+38205833 Msa0451100:CDS
CCATCCCACCACTTAGGAGG+AGG 0.578549 3_3:-38206217 None:intergenic
AGTATCACATTCAAAACGTA+CGG 0.579270 3_3:-38205741 None:intergenic
AAGAGCATATATCATTGAAG+AGG 0.580315 3_3:-38202081 None:intergenic
TTGGGATGGTTGCTGCACAT+TGG 0.584288 3_3:+38206170 Msa0451100:CDS
GGAGCTATCATCCGACCGAT+GGG 0.587580 3_3:+38205690 Msa0451100:CDS
GGCGTCGTGTTGATATCTAT+AGG 0.588523 3_3:+38206935 Msa0451100:exon
GTTCGAAGAGAGGTTGGAGA+AGG 0.592220 3_3:+38206391 Msa0451100:CDS
CGATAGGCCCATCATTGGGA+TGG 0.592976 3_3:+38206156 Msa0451100:CDS
AGCCAAGAACGAAACTTTGG+AGG 0.594708 3_3:-38205108 None:intergenic
TAGATATCAACACGACGCCA+CGG 0.596729 3_3:-38206931 None:intergenic
TACTGAAATTCGGAAAGCAT+CGG 0.598546 3_3:+38205044 Msa0451100:CDS
TTCTCCAACCTCTCTTCGAA+CGG 0.599277 3_3:-38206389 None:intergenic
TACCTCATAGAGTAATGAGA+TGG 0.599918 3_3:-38206964 None:intergenic
AGTCATCGGCTTATGGTGGA+TGG 0.599998 3_3:+38205780 Msa0451100:CDS
GCAGCAACCATCCCAATGAT+GGG 0.601660 3_3:-38206163 None:intergenic
CTGATGCTCCTCCTCCTAAG+TGG 0.601801 3_3:+38206209 Msa0451100:CDS
TCCAAATAACAGCCTAGGTG+AGG 0.601979 3_3:+38205904 Msa0451100:CDS
TGGCAGCGGCGGATTTAGCG+TGG 0.602215 3_3:-38202216 None:intergenic
CTCTAAGAGCAAGATACTTG+AGG 0.603618 3_3:+38205931 Msa0451100:CDS
TTGCCATCCCACCACTTAGG+AGG 0.606952 3_3:-38206220 None:intergenic
TACGCCGTTCGAAGAGAGGT+TGG 0.606989 3_3:+38206385 Msa0451100:CDS
GCTTTGTTGTGGTGCCGAGA+CGG 0.608775 3_3:-38202250 None:intergenic
AGGACCCAAGTGAAGAAGGT+AGG 0.610700 3_3:-38202061 None:intergenic
CCCTTCAGATATCTTCATTG+GGG 0.615934 3_3:-38205834 None:intergenic
CCAGAATCGTTACTACATGA+AGG 0.617304 3_3:-38205084 None:intergenic
ATGACTCTTCGGAAGGAAGT+GGG 0.617710 3_3:+38205663 Msa0451100:CDS
TGCTTTCCGAATTTCAGTAG+GGG 0.618402 3_3:-38205040 None:intergenic
AGGATACTATCATCGCTCAA+AGG 0.620789 3_3:+38206423 Msa0451100:CDS
CCCGCAAAACTCCTGTCGAT+AGG 0.624406 3_3:+38206140 Msa0451100:CDS
AGAAGACAAGCCTTCTTCCA+CGG 0.626278 3_3:-38206050 None:intergenic
TTCATCCCATCCACAGTCCG+TGG 0.627583 3_3:+38206914 Msa0451100:CDS
CAGCGGCGGATTTAGCGTGG+TGG 0.627645 3_3:-38202213 None:intergenic
CCCCAATGAAGATATCTGAA+GGG 0.632021 3_3:+38205834 Msa0451100:CDS
GAATATCATGACTCTTCGGA+AGG 0.632054 3_3:+38205656 Msa0451100:CDS
CTTTGTAAAGCAGGATGATG+TGG 0.633113 3_3:+38203756 Msa0451100:intron
TGCTGCACATTGGATTGAAG+AGG 0.634738 3_3:+38206180 Msa0451100:CDS
ACACAAACTGGGACTTAACA+GGG 0.635382 3_3:-38205880 None:intergenic
TGTGAGTCATCGGCTTATGG+TGG 0.636034 3_3:+38205776 Msa0451100:CDS
TTAATAACCTGCTAGGTGTG+TGG 0.641765 3_3:-38205236 None:intergenic
GTTGGAGAAGGCATTATCTG+AGG 0.647231 3_3:+38206403 Msa0451100:CDS
ATGGGACTGAAATGAATAAG+GGG 0.654668 3_3:+38205708 Msa0451100:CDS
GTTATTTGGATACACAAACT+GGG 0.662575 3_3:-38205891 None:intergenic
AGATAAAAGTGAATCTACCG+TGG 0.669633 3_3:+38206033 Msa0451100:CDS
TCTTAGAGACATCCTCACCT+AGG 0.675023 3_3:-38205916 None:intergenic
TGATAGGCAGCTTAAAGACG+AGG 0.694138 3_3:+38203985 Msa0451100:CDS
GGACTGAAATGAATAAGGGG+AGG 0.697836 3_3:+38205711 Msa0451100:CDS
GTGGTGCCGAGACGGCACGG+CGG 0.818841 3_3:-38202242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTTGAATTTGAATA+TGG - chr3_3:38201985-38202004 None:intergenic 15.0%
!! AAACTTAATTCAATAATCAT+AGG - chr3_3:38202409-38202428 None:intergenic 15.0%
!! AAAAAATTGTTAAATAGGAA+TGG + chr3_3:38202553-38202572 Msa0451100:intron 15.0%
!! AAAAATTGTTAAATAGGAAT+GGG + chr3_3:38202554-38202573 Msa0451100:intron 15.0%
!!! GATTAATTTTATCGATTTAA+AGG + chr3_3:38202651-38202670 Msa0451100:intron 15.0%
!! TTCAAAAAAAAAAATTAAGC+TGG + chr3_3:38202815-38202834 Msa0451100:intron 15.0%
!!! TTTTTTTTTTTTTTCCTGTT+TGG + chr3_3:38202849-38202868 Msa0451100:intron 15.0%
!!! TTTTTTTTTTTTTCCTGTTT+GGG + chr3_3:38202850-38202869 Msa0451100:intron 15.0%
!!! TTTTAGGTTTTTTTTTTTGT+TGG + chr3_3:38202911-38202930 Msa0451100:intron 15.0%
!!! ATTTACTGAAATTTTAGTTT+TGG + chr3_3:38203155-38203174 Msa0451100:intron 15.0%
!!! AAAGTATTTAATAGTTTTCA+TGG + chr3_3:38203559-38203578 Msa0451100:intron 15.0%
!!! AAGTATTTAATAGTTTTCAT+GGG + chr3_3:38203560-38203579 Msa0451100:intron 15.0%
!!! TTAACCTTTTTTTTTTTGAA+AGG + chr3_3:38205262-38205281 Msa0451100:intron 15.0%
!! TGAAAAGGTTATATTTAATA+TGG - chr3_3:38205577-38205596 None:intergenic 15.0%
!! TAATGAATTGAAAAATGGAT+CGG - chr3_3:38202150-38202169 None:intergenic 20.0%
!!! ATCCATTTTTCAATTCATTA+TGG + chr3_3:38202150-38202169 Msa0451100:exon 20.0%
!!! TCCATTTTTCAATTCATTAT+GGG + chr3_3:38202151-38202170 Msa0451100:exon 20.0%
!! TACAAAAAATCAACAAGAAA+CGG - chr3_3:38202306-38202325 None:intergenic 20.0%
!! TGTGGAAAAAATTGTTAAAT+AGG + chr3_3:38202548-38202567 Msa0451100:intron 20.0%
!! ATGAAATTGTGAAATGATAA+TGG + chr3_3:38202677-38202696 Msa0451100:intron 20.0%
!!! AAATGTTAGTTTAATTAAGC+TGG + chr3_3:38202597-38202616 Msa0451100:intron 20.0%
!!! TTTTTTGAAGAACCTAAATT+CGG - chr3_3:38202804-38202823 None:intergenic 20.0%
!! AAAAAAAATTAAGCTGGATT+TGG + chr3_3:38202821-38202840 Msa0451100:intron 20.0%
!!! GAAATTTGTTTATGAAATGA+TGG + chr3_3:38202936-38202955 Msa0451100:intron 20.0%
!!! TAGGTTTGTTATTGATTTAA+AGG + chr3_3:38203109-38203128 Msa0451100:intron 20.0%
!!! TAGCTTTGTTATTGATTTAA+TGG + chr3_3:38203313-38203332 Msa0451100:intron 20.0%
!!! TAGTGTTTGAACTTTTATTT+AGG + chr3_3:38203395-38203414 Msa0451100:intron 20.0%
!! TAGCAAAATAAATTTACCTT+CGG - chr3_3:38203815-38203834 None:intergenic 20.0%
!!! TCTCTTTACTTTTTTAATGA+AGG + chr3_3:38204577-38204596 Msa0451100:intron 20.0%
!!! TTTAGATAATTGAGTTTTTG+AGG - chr3_3:38204735-38204754 None:intergenic 20.0%
!! AATAGACAAATGACTTAAAA+AGG - chr3_3:38204915-38204934 None:intergenic 20.0%
!!! TTAAGTTTGTTTACATGATT+TGG + chr3_3:38204966-38204985 Msa0451100:intron 20.0%
!! ATTGCCTTTCAAAAAAAAAA+AGG - chr3_3:38205269-38205288 None:intergenic 20.0%
!!! AAAATTGGTGTTTTAGAAAA+TGG + chr3_3:38205466-38205485 Msa0451100:intron 20.0%
!!! TTTCCCTTTTAGATTTTTTA+AGG + chr3_3:38205508-38205527 Msa0451100:intron 20.0%
!!! TTCCCTTTTAGATTTTTTAA+GGG + chr3_3:38205509-38205528 Msa0451100:intron 20.0%
!!! AAAGAAATTAACTTCTGAAA+AGG - chr3_3:38205592-38205611 None:intergenic 20.0%
!!! AATATCGTTTTAACTTTCAA+AGG - chr3_3:38206492-38206511 None:intergenic 20.0%
!! CAAATATATACAATACAAGT+GGG - chr3_3:38207091-38207110 None:intergenic 20.0%
!! TCAAATATATACAATACAAG+TGG - chr3_3:38207092-38207111 None:intergenic 20.0%
!! TGTATTGTATATATTTGATG+AGG + chr3_3:38207094-38207113 Msa0451100:three_prime_UTR 20.0%
! AATGAATTGAAAAATGGATC+GGG - chr3_3:38202149-38202168 None:intergenic 25.0%
! ACCCATAATGAATTGAAAAA+TGG - chr3_3:38202155-38202174 None:intergenic 25.0%
! GATTATGAGTTACATTACAT+TGG - chr3_3:38202275-38202294 None:intergenic 25.0%
!! AATTCCAAGAATTTTTGTTG+TGG + chr3_3:38202530-38202549 Msa0451100:intron 25.0%
!! TTTTCCACAACAAAAATTCT+TGG - chr3_3:38202537-38202556 None:intergenic 25.0%
!! AGTTTAATTAAGCTGGATTT+TGG + chr3_3:38202710-38202729 Msa0451100:intron 25.0%
!! GTTTAATTAAGCTGGATTTT+GGG + chr3_3:38202711-38202730 Msa0451100:intron 25.0%
!!! GTTCTGGTTTTTGATATTTT+AGG + chr3_3:38202895-38202914 Msa0451100:intron 25.0%
! GTTGAAATGATAGCTTAATT+CGG + chr3_3:38203016-38203035 Msa0451100:intron 25.0%
!!! TTTGGATTTTTTGTGTGTTT+AGG + chr3_3:38203090-38203109 Msa0451100:intron 25.0%
! AGGATTATGAAATGTAATGA+TGG + chr3_3:38203129-38203148 Msa0451100:intron 25.0%
! ATGATGAATTTGTAGATTTC+AGG + chr3_3:38203253-38203272 Msa0451100:intron 25.0%
!!! AATGGATTATGAAATGATGA+AGG + chr3_3:38203331-38203350 Msa0451100:intron 25.0%
!!! TTTTATTTAGGAGCTTTGTT+TGG + chr3_3:38203407-38203426 Msa0451100:intron 25.0%
!!! GTTCTAGTTACTGAAATTTT+AGG + chr3_3:38203523-38203542 Msa0451100:intron 25.0%
!! TCTCAGTAATGTACTAATTT+TGG + chr3_3:38203886-38203905 Msa0451100:intron 25.0%
!! CTCAGTAATGTACTAATTTT+GGG + chr3_3:38203887-38203906 Msa0451100:intron 25.0%
!! TCAGTAATGTACTAATTTTG+GGG + chr3_3:38203888-38203907 Msa0451100:intron 25.0%
!!! GGGTTTAAATTTTGAAAAGA+GGG + chr3_3:38203908-38203927 Msa0451100:intron 25.0%
! TGTAATGTGTATTCTCTATT+CGG + chr3_3:38204099-38204118 Msa0451100:intron 25.0%
! GAAAGATAAAAAATAGCTTC+AGG - chr3_3:38204253-38204272 None:intergenic 25.0%
! AATGTTACCGTTTATGTTTA+TGG + chr3_3:38204349-38204368 Msa0451100:intron 25.0%
!! TGCTTTAACTTAGTTAATGT+AGG + chr3_3:38204410-38204429 Msa0451100:intron 25.0%
! TTACAGATAAATGCACAATT+TGG + chr3_3:38204529-38204548 Msa0451100:intron 25.0%
! TAATGAAGGTAGAAATTATC+TGG + chr3_3:38204591-38204610 Msa0451100:intron 25.0%
! GACATACTATATAGATATAC+AGG - chr3_3:38204659-38204678 None:intergenic 25.0%
!!! CATTCTTCACATTGTTTTTT+GGG - chr3_3:38205192-38205211 None:intergenic 25.0%
! CAAAAAACAATGTGAAGAAT+GGG + chr3_3:38205191-38205210 Msa0451100:CDS 25.0%
! TTAAAGATTAATAACCTGCT+AGG - chr3_3:38205246-38205265 None:intergenic 25.0%
! TGCCCTTAAAAAATCTAAAA+GGG - chr3_3:38205514-38205533 None:intergenic 25.0%
! ATGCCCTTAAAAAATCTAAA+AGG - chr3_3:38205515-38205534 None:intergenic 25.0%
!!! TTTTTTAAGGGCATATCTTA+TGG + chr3_3:38205521-38205540 Msa0451100:intron 25.0%
!!! TTTTTAAGGGCATATCTTAT+GGG + chr3_3:38205522-38205541 Msa0451100:intron 25.0%
!! TTGTATTTGTTGGTTGAATT+TGG - chr3_3:38206253-38206272 None:intergenic 25.0%
! TCATACTTCTTTGTATTTGT+TGG - chr3_3:38206263-38206282 None:intergenic 25.0%
! GAAAACAATCAGCATTAATT+AGG - chr3_3:38206340-38206359 None:intergenic 25.0%
!!! AATTAATGCTGATTGTTTTC+AGG + chr3_3:38206340-38206359 Msa0451100:intron 25.0%
! TGGTAAATTGCTTATGTATA+TGG - chr3_3:38206660-38206679 None:intergenic 25.0%
!!! TGTCTTTTTGATTTGTGATT+TGG + chr3_3:38206809-38206828 Msa0451100:intron 25.0%
! ATATATTTGATGAGGATTGT+TGG + chr3_3:38207102-38207121 Msa0451100:three_prime_UTR 25.0%
! TATATTTGATGAGGATTGTT+GGG + chr3_3:38207103-38207122 Msa0451100:three_prime_UTR 25.0%
! AAGAGCATATATCATTGAAG+AGG - chr3_3:38202084-38202103 None:intergenic 30.0%
TTCAATGATATATGCTCTTC+TGG + chr3_3:38202085-38202104 Msa0451100:five_prime_UTR 30.0%
TTGTTAAATAGGAATGGGAA+TGG + chr3_3:38202559-38202578 Msa0451100:intron 30.0%
TGTTAAATAGGAATGGGAAT+GGG + chr3_3:38202560-38202579 Msa0451100:intron 30.0%
!! GATGATGAATTTGTTGATTG+CGG + chr3_3:38202872-38202891 Msa0451100:intron 30.0%
!! ATGATGAATTTGTTGATTGC+GGG + chr3_3:38202873-38202892 Msa0451100:intron 30.0%
!!! ATGTTCGTTGTTGTTGTTTT+TGG + chr3_3:38203072-38203091 Msa0451100:intron 30.0%
GAGAAATTGTGATATGAGAA+TGG + chr3_3:38203177-38203196 Msa0451100:intron 30.0%
!! AATTTGTAGATTTCAGGTTC+TGG + chr3_3:38203259-38203278 Msa0451100:intron 30.0%
!!! TTCTGGTTTCTGAAGTTTTA+TGG + chr3_3:38203276-38203295 Msa0451100:intron 30.0%
! TTGGTAGCTAAAATGTTGAA+TGG + chr3_3:38203426-38203445 Msa0451100:intron 30.0%
AAATTCATCATCTCAAGAAG+GGG - chr3_3:38203492-38203511 None:intergenic 30.0%
CAAATTCATCATCTCAAGAA+GGG - chr3_3:38203493-38203512 None:intergenic 30.0%
ACAAATTCATCATCTCAAGA+AGG - chr3_3:38203494-38203513 None:intergenic 30.0%
!!! TTTTGACTTTTTGATGTGAC+TGG + chr3_3:38203721-38203740 Msa0451100:intron 30.0%
TCAGAAACAAAGTAGACAAA+CGG - chr3_3:38203792-38203811 None:intergenic 30.0%
!! CTTTTACAGTTTTGATGTCA+TGG + chr3_3:38203861-38203880 Msa0451100:intron 30.0%
!! GGGGTTTAAATTTTGAAAAG+AGG + chr3_3:38203907-38203926 Msa0451100:intron 30.0%
! AGAACTCTACTTGATAGTAT+TGG + chr3_3:38204181-38204200 Msa0451100:intron 30.0%
TCAATTCAATACTTGAGAGT+TGG - chr3_3:38204284-38204303 None:intergenic 30.0%
! CTTTAGTTTCTGTTTAAGTG+AGG + chr3_3:38204319-38204338 Msa0451100:intron 30.0%
CTGTCTACCATAAACATAAA+CGG - chr3_3:38204359-38204378 None:intergenic 30.0%
ATACAATGTAGTGAGTATCA+AGG - chr3_3:38204476-38204495 None:intergenic 30.0%
!! CATTGTATTTTTCGATCTCA+AGG + chr3_3:38204488-38204507 Msa0451100:intron 30.0%
AAGAGATTGCAGTTAAGTTA+TGG - chr3_3:38204563-38204582 None:intergenic 30.0%
! TAAAATAGCTGATGTTTTGC+TGG + chr3_3:38204758-38204777 Msa0451100:intron 30.0%
!!! GACTTAAAAAGGTGTTTTTG+AGG - chr3_3:38204904-38204923 None:intergenic 30.0%
!!! TGATTTGGTAAACATTTTGC+AGG + chr3_3:38204981-38205000 Msa0451100:intron 30.0%
!!! CCATTCTTCACATTGTTTTT+TGG - chr3_3:38205193-38205212 None:intergenic 30.0%
CCAAAAAACAATGTGAAGAA+TGG + chr3_3:38205190-38205209 Msa0451100:CDS 30.0%
GTACATTACATGCATTAAAC+AGG - chr3_3:38205298-38205317 None:intergenic 30.0%
AACAACCACACAATCAATTT+CGG + chr3_3:38205335-38205354 Msa0451100:intron 30.0%
! TTAGCCTTTCTTATACAAGA+TGG - chr3_3:38205397-38205416 None:intergenic 30.0%
ATCTTGTATAAGAAAGGCTA+AGG + chr3_3:38205396-38205415 Msa0451100:intron 30.0%
AATGTGTTCCTCTTCAAAAT+TGG + chr3_3:38205451-38205470 Msa0451100:intron 30.0%
!! CTAAAACACCAATTTTGAAG+AGG - chr3_3:38205462-38205481 None:intergenic 30.0%
!! TTTTAAGGGCATATCTTATG+GGG + chr3_3:38205523-38205542 Msa0451100:intron 30.0%
AGTATCACATTCAAAACGTA+CGG - chr3_3:38205744-38205763 None:intergenic 30.0%
GTTATTTGGATACACAAACT+GGG - chr3_3:38205894-38205913 None:intergenic 30.0%
! TGTTATTTGGATACACAAAC+TGG - chr3_3:38205895-38205914 None:intergenic 30.0%
! ATACAAAGAAGTATGATCCT+TGG + chr3_3:38206267-38206286 Msa0451100:intron 30.0%
AGACTTCTAATTCTTTCACA+TGG - chr3_3:38206303-38206322 None:intergenic 30.0%
AGGAATTCAACGATACATAA+AGG - chr3_3:38206584-38206603 None:intergenic 30.0%
AGAAACCTGTATGATTTAGT+GGG - chr3_3:38206781-38206800 None:intergenic 30.0%
TCATTCTCATCAAAAGCAAT+TGG - chr3_3:38206861-38206880 None:intergenic 30.0%
AGGATTGTTGGGTTAAATAT+TGG + chr3_3:38207114-38207133 Msa0451100:three_prime_UTR 30.0%
GGATTGTTGGGTTAAATATT+GGG + chr3_3:38207115-38207134 Msa0451100:three_prime_UTR 30.0%
GATCGGGAAAAAAAAAACGA+AGG - chr3_3:38202133-38202152 None:intergenic 35.0%
!! ACATTACATTGGCTTTGTTG+TGG - chr3_3:38202264-38202283 None:intergenic 35.0%
!! AATTAAGCTGGATTTTGGGT+TGG + chr3_3:38202715-38202734 Msa0451100:intron 35.0%
TTGAAGAACCTAAATTCGGA+CGG - chr3_3:38202800-38202819 None:intergenic 35.0%
ACAAATTCATCATCCCAAAC+AGG - chr3_3:38202866-38202885 None:intergenic 35.0%
GTGAAATACTGAAATGTGAG+TGG + chr3_3:38202994-38203013 Msa0451100:intron 35.0%
CAACGAACATAAGAACAAAG+AGG - chr3_3:38203062-38203081 None:intergenic 35.0%
!! CTTCTGGTTGCTGAAATTTT+TGG + chr3_3:38203615-38203634 Msa0451100:intron 35.0%
! GAATTTGCTCTTTGTAAAGC+AGG + chr3_3:38203747-38203766 Msa0451100:intron 35.0%
AAGACAATGTGCATCGTAAT+GGG + chr3_3:38203933-38203952 Msa0451100:CDS 35.0%
TTCATGCATGTTTAGCTGTT+TGG + chr3_3:38204059-38204078 Msa0451100:intron 35.0%
!! CAGTGTCTTAGTCTTATATC+AGG - chr3_3:38204135-38204154 None:intergenic 35.0%
GATATAAGACTAAGACACTG+AGG + chr3_3:38204135-38204154 Msa0451100:intron 35.0%
ATAGCTTCAGGTCATAATTC+TGG - chr3_3:38204241-38204260 None:intergenic 35.0%
GGTAAGTGTTATACTAACGA+TGG - chr3_3:38204438-38204457 None:intergenic 35.0%
!! ATTTTTCGATCTCAAGGTTC+TGG + chr3_3:38204494-38204513 Msa0451100:intron 35.0%
AGAAATTATCTGGTTGTCCA+TGG + chr3_3:38204601-38204620 Msa0451100:intron 35.0%
GCAAAGTTTCTTAAAGCTTG+TGG + chr3_3:38205003-38205022 Msa0451100:CDS 35.0%
ATGCTTTCCGAATTTCAGTA+GGG - chr3_3:38205044-38205063 None:intergenic 35.0%
! TACTGAAATTCGGAAAGCAT+CGG + chr3_3:38205044-38205063 Msa0451100:CDS 35.0%
TTGAATGGTTGGACATTAGT+TGG - chr3_3:38205159-38205178 None:intergenic 35.0%
!!! TCACATTGTTTTTTGGGAGT+TGG - chr3_3:38205186-38205205 None:intergenic 35.0%
TCTTATTACTATTAGCGCGA+TGG + chr3_3:38205367-38205386 Msa0451100:intron 35.0%
CTTATTACTATTAGCGCGAT+GGG + chr3_3:38205368-38205387 Msa0451100:intron 35.0%
GACACCATCTTGTATAAGAA+AGG + chr3_3:38205390-38205409 Msa0451100:intron 35.0%
! GAAGAGGAACACATTTTCTT+AGG - chr3_3:38205446-38205465 None:intergenic 35.0%
CAATGCACACAATACTCAAT+GGG + chr3_3:38205634-38205653 Msa0451100:CDS 35.0%
ATGGGAATATCATGACTCTT+CGG + chr3_3:38205652-38205671 Msa0451100:CDS 35.0%
CTTATTCATTTCAGTCCCAT+CGG - chr3_3:38205708-38205727 None:intergenic 35.0%
GATGGGACTGAAATGAATAA+GGG + chr3_3:38205707-38205726 Msa0451100:CDS 35.0%
ATGGGACTGAAATGAATAAG+GGG + chr3_3:38205708-38205727 Msa0451100:CDS 35.0%
TATTTCATCCTGTGAGTCAT+CGG + chr3_3:38205766-38205785 Msa0451100:CDS 35.0%
TCCCTTCAGATATCTTCATT+GGG - chr3_3:38205838-38205857 None:intergenic 35.0%
ATCCCTTCAGATATCTTCAT+TGG - chr3_3:38205839-38205858 None:intergenic 35.0%
!! ACGGTAGATTCACTTTTATC+TGG - chr3_3:38206034-38206053 None:intergenic 35.0%
AGATAAAAGTGAATCTACCG+TGG + chr3_3:38206033-38206052 Msa0451100:CDS 35.0%
GAGAAGAAAGAAAATGGAGA+TGG + chr3_3:38206105-38206124 Msa0451100:CDS 35.0%
AGAAGTTTGTACTTCTGATG+CGG + chr3_3:38206513-38206532 Msa0451100:intron 35.0%
! GTAAGTGGTCTTTTGTCAAA+TGG - chr3_3:38206680-38206699 None:intergenic 35.0%
GCACTCAATACAAAAGTAAG+TGG - chr3_3:38206695-38206714 None:intergenic 35.0%
!! AGTCTCGCGATTTTGATAAT+TGG + chr3_3:38206754-38206773 Msa0451100:intron 35.0%
GAGAAACCTGTATGATTTAG+TGG - chr3_3:38206782-38206801 None:intergenic 35.0%
!! TGATTTGTGATTTGGTTCAC+AGG + chr3_3:38206817-38206836 Msa0451100:intron 35.0%
GTTCACAGGAAAGATATTTG+CGG + chr3_3:38206831-38206850 Msa0451100:intron 35.0%
TACCTCATAGAGTAATGAGA+TGG - chr3_3:38206967-38206986 None:intergenic 35.0%
TTGGGTTAAATATTGGGCAT+TGG + chr3_3:38207121-38207140 Msa0451100:three_prime_UTR 35.0%
TGGGTTAAATATTGGGCATT+GGG + chr3_3:38207122-38207141 Msa0451100:three_prime_UTR 35.0%
GAACACGAAAGCAAGTGAAA+AGG - chr3_3:38202180-38202199 None:intergenic 40.0%
!! TATGAAGCACTGACACTTCT+TGG + chr3_3:38202339-38202358 Msa0451100:intron 40.0%
CACTGACACTTCTTGGATTA+GGG + chr3_3:38202346-38202365 Msa0451100:intron 40.0%
! ACTGACACTTCTTGGATTAG+GGG + chr3_3:38202347-38202366 Msa0451100:intron 40.0%
AATAGGAATGGGAATGGGAA+TGG + chr3_3:38202565-38202584 Msa0451100:intron 40.0%
GAATGGATCCTAAAACCTTG+AGG - chr3_3:38202774-38202793 None:intergenic 40.0%
TGAAGAACCTAAATTCGGAC+GGG - chr3_3:38202799-38202818 None:intergenic 40.0%
!! AATTTGTTGATTGCGGGTTC+TGG + chr3_3:38202879-38202898 Msa0451100:intron 40.0%
GTTGAGATGATCGCTTCATT+CGG + chr3_3:38203448-38203467 Msa0451100:intron 40.0%
TTCTGAGTATGTTCTGCTTC+TGG + chr3_3:38203599-38203618 Msa0451100:intron 40.0%
CTTTGTAAAGCAGGATGATG+TGG + chr3_3:38203756-38203775 Msa0451100:intron 40.0%
!! TCTACTTTGTTTCTGACCGA+AGG + chr3_3:38203796-38203815 Msa0451100:CDS 40.0%
GAAGACAATGTGCATCGTAA+TGG + chr3_3:38203932-38203951 Msa0451100:CDS 40.0%
!! TCGTAATGGGAGAAGTTTTG+AGG + chr3_3:38203946-38203965 Msa0451100:CDS 40.0%
!!! TAATGGGAGAAGTTTTGAGG+AGG + chr3_3:38203949-38203968 Msa0451100:CDS 40.0%
!!! AATGGGAGAAGTTTTGAGGA+GGG + chr3_3:38203950-38203969 Msa0451100:CDS 40.0%
ATGCATGTTTAGCTGTTTGG+AGG + chr3_3:38204062-38204081 Msa0451100:intron 40.0%
GTCTTATATCAGGAGCGAAA+TGG - chr3_3:38204125-38204144 None:intergenic 40.0%
CGAAGATGTCTCATTGAGAA+TGG + chr3_3:38204215-38204234 Msa0451100:intron 40.0%
! CATTGAAGAAGTAAGCACTG+TGG - chr3_3:38204382-38204401 None:intergenic 40.0%
TCAAGGCTTTCTTAGTATCG+TGG - chr3_3:38204459-38204478 None:intergenic 40.0%
ATACACCACAAATCTTAGCC+AGG - chr3_3:38204633-38204652 None:intergenic 40.0%
TACAAGCATATGCATGTCCT+GGG + chr3_3:38204686-38204705 Msa0451100:intron 40.0%
! AATAGCTGATGTTTTGCTGG+TGG + chr3_3:38204761-38204780 Msa0451100:intron 40.0%
CAAGTACCCCTACTGAAATT+CGG + chr3_3:38205034-38205053 Msa0451100:CDS 40.0%
TGCTTTCCGAATTTCAGTAG+GGG - chr3_3:38205043-38205062 None:intergenic 40.0%
GATGCTTTCCGAATTTCAGT+AGG - chr3_3:38205045-38205064 None:intergenic 40.0%
CCAGAATCGTTACTACATGA+AGG - chr3_3:38205087-38205106 None:intergenic 40.0%
CCTTCATGTAGTAACGATTC+TGG + chr3_3:38205084-38205103 Msa0451100:CDS 40.0%
AGAAGCCAAGAACGAAACTT+TGG - chr3_3:38205114-38205133 None:intergenic 40.0%
!!! CATTGTTTTTTGGGAGTTGG+CGG - chr3_3:38205183-38205202 None:intergenic 40.0%
TTAATAACCTGCTAGGTGTG+TGG - chr3_3:38205239-38205258 None:intergenic 40.0%
AACCACACAATCAATTTCGG+TGG + chr3_3:38205338-38205357 Msa0451100:intron 40.0%
ATCCACCGAAATTGATTGTG+TGG - chr3_3:38205343-38205362 None:intergenic 40.0%
! CCATTGAGTATTGTGTGCAT+TGG - chr3_3:38205636-38205655 None:intergenic 40.0%
CCAATGCACACAATACTCAA+TGG + chr3_3:38205633-38205652 Msa0451100:CDS 40.0%
GAATATCATGACTCTTCGGA+AGG + chr3_3:38205656-38205675 Msa0451100:CDS 40.0%
CGATGGGACTGAAATGAATA+AGG + chr3_3:38205706-38205725 Msa0451100:CDS 40.0%
ATCTTCATTGGGGTAGGATT+TGG - chr3_3:38205827-38205846 None:intergenic 40.0%
TCAGATATCTTCATTGGGGT+AGG - chr3_3:38205833-38205852 None:intergenic 40.0%
ACCCCAATGAAGATATCTGA+AGG + chr3_3:38205833-38205852 Msa0451100:CDS 40.0%
CCCTTCAGATATCTTCATTG+GGG - chr3_3:38205837-38205856 None:intergenic 40.0%
CCCCAATGAAGATATCTGAA+GGG + chr3_3:38205834-38205853 Msa0451100:CDS 40.0%
TTAACAGGGTAAACAGTTCC+AGG - chr3_3:38205869-38205888 None:intergenic 40.0%
ACACAAACTGGGACTTAACA+GGG - chr3_3:38205883-38205902 None:intergenic 40.0%
TACACAAACTGGGACTTAAC+AGG - chr3_3:38205884-38205903 None:intergenic 40.0%
GTGTATCCAAATAACAGCCT+AGG + chr3_3:38205899-38205918 Msa0451100:CDS 40.0%
! CTCTAAGAGCAAGATACTTG+AGG + chr3_3:38205931-38205950 Msa0451100:CDS 40.0%
!! GAAGCCTGCATCTGTTATTT+TGG + chr3_3:38206078-38206097 Msa0451100:CDS 40.0%
TCCTCCAAAATAACAGATGC+AGG - chr3_3:38206085-38206104 None:intergenic 40.0%
GGAGGAGAGAAGAAAGAAAA+TGG + chr3_3:38206099-38206118 Msa0451100:CDS 40.0%
CACATGGAAAATAGCTACCA+AGG - chr3_3:38206287-38206306 None:intergenic 40.0%
AGGATACTATCATCGCTCAA+AGG + chr3_3:38206423-38206442 Msa0451100:CDS 40.0%
GCAAACAACAGTGCTTTCAT+AGG - chr3_3:38206453-38206472 None:intergenic 40.0%
TTCAACGTCATGCTAAACTC+AGG - chr3_3:38206604-38206623 None:intergenic 40.0%
TTGGTCCCACTAAATCATAC+AGG + chr3_3:38206773-38206792 Msa0451100:intron 40.0%
GTCCATCTCATTACTCTATG+AGG + chr3_3:38206962-38206981 Msa0451100:three_prime_UTR 40.0%
!! AATATTGGGCATTGGGAGAT+CGG + chr3_3:38207129-38207148 Msa0451100:three_prime_UTR 40.0%
CTGACCTACCTTCTTCACTT+GGG + chr3_3:38202057-38202076 Msa0451100:five_prime_UTR 45.0%
! GCACTGACACTTCTTGGATT+AGG + chr3_3:38202345-38202364 Msa0451100:intron 45.0%
CAAAGTCACACACACTGACA+CGG - chr3_3:38202482-38202501 None:intergenic 45.0%
!!! TAAGCTGGATTTTGGGTTGG+TGG + chr3_3:38202718-38202737 Msa0451100:intron 45.0%
!!! GGATTTTGGGTTGGTGGTAT+TGG + chr3_3:38202724-38202743 Msa0451100:intron 45.0%
TGGATCCTAAAACCTTGAGG+AGG - chr3_3:38202771-38202790 None:intergenic 45.0%
GAAGAACCTAAATTCGGACG+GGG - chr3_3:38202798-38202817 None:intergenic 45.0%
AGGGATCACAGAGTGATGAT+AGG + chr3_3:38203969-38203988 Msa0451100:CDS 45.0%
TGATAGGCAGCTTAAAGACG+AGG + chr3_3:38203985-38204004 Msa0451100:CDS 45.0%
! ATCTCAAGGTTCTGGCAGTA+GGG + chr3_3:38204502-38204521 Msa0451100:intron 45.0%
GCATTCCTGGCTAAGATTTG+TGG + chr3_3:38204625-38204644 Msa0451100:intron 45.0%
CTACAAGCATATGCATGTCC+TGG + chr3_3:38204685-38204704 Msa0451100:intron 45.0%
!! TTCAGTAGGGGTACTTGCTA+TGG - chr3_3:38205031-38205050 None:intergenic 45.0%
GTCCTCCAAAGTTTCGTTCT+TGG + chr3_3:38205106-38205125 Msa0451100:CDS 45.0%
AGCCAAGAACGAAACTTTGG+AGG - chr3_3:38205111-38205130 None:intergenic 45.0%
ATGACTCTTCGGAAGGAAGT+GGG + chr3_3:38205663-38205682 Msa0451100:CDS 45.0%
TTCATTTCAGTCCCATCGGT+CGG - chr3_3:38205704-38205723 None:intergenic 45.0%
GGACTGAAATGAATAAGGGG+AGG + chr3_3:38205711-38205730 Msa0451100:CDS 45.0%
TCCAAATAACAGCCTAGGTG+AGG + chr3_3:38205904-38205923 Msa0451100:CDS 45.0%
TCCTCACCTAGGCTGTTATT+TGG - chr3_3:38205908-38205927 None:intergenic 45.0%
TCTTAGAGACATCCTCACCT+AGG - chr3_3:38205919-38205938 None:intergenic 45.0%
GAGCAAGATACTTGAGGAAG+AGG + chr3_3:38205937-38205956 Msa0451100:CDS 45.0%
ATGTTCCTGCGCAAGATTCA+AGG + chr3_3:38205963-38205982 Msa0451100:CDS 45.0%
ATCTTCCTTGAATCTTGCGC+AGG - chr3_3:38205971-38205990 None:intergenic 45.0%
AGTGAATCTACCGTGGAAGA+AGG + chr3_3:38206040-38206059 Msa0451100:CDS 45.0%
AGAAGACAAGCCTTCTTCCA+CGG - chr3_3:38206053-38206072 None:intergenic 45.0%
TGGAAGAAGGCTTGTCTTCT+TGG + chr3_3:38206053-38206072 Msa0451100:CDS 45.0%
!!! GCCTGCATCTGTTATTTTGG+AGG + chr3_3:38206081-38206100 Msa0451100:CDS 45.0%
TGCTGCACATTGGATTGAAG+AGG + chr3_3:38206180-38206199 Msa0451100:CDS 45.0%
TTCTCCAACCTCTCTTCGAA+CGG - chr3_3:38206392-38206411 None:intergenic 45.0%
!! GTTGGAGAAGGCATTATCTG+AGG + chr3_3:38206403-38206422 Msa0451100:CDS 45.0%
TAGATATCAACACGACGCCA+CGG - chr3_3:38206934-38206953 None:intergenic 45.0%
! GGCGTCGTGTTGATATCTAT+AGG + chr3_3:38206935-38206954 Msa0451100:exon 45.0%
AGCACTGCATTGGGACTTAA+TGG - chr3_3:38207010-38207029 None:intergenic 45.0%
CAAGCAATCAGCACTGCATT+GGG - chr3_3:38207019-38207038 None:intergenic 45.0%
CCAAGTGAAGAAGGTAGGTC+AGG - chr3_3:38202059-38202078 None:intergenic 50.0%
CCTGACCTACCTTCTTCACT+TGG + chr3_3:38202056-38202075 Msa0451100:five_prime_UTR 50.0%
AGGACCCAAGTGAAGAAGGT+AGG - chr3_3:38202064-38202083 None:intergenic 50.0%
GAAGAGGACCCAAGTGAAGA+AGG - chr3_3:38202068-38202087 None:intergenic 50.0%
!! TTGGGTTGGTGGTATTGGCT+TGG + chr3_3:38202729-38202748 Msa0451100:intron 50.0%
!! TGGGTTGGTGGTATTGGCTT+GGG + chr3_3:38202730-38202749 Msa0451100:intron 50.0%
! GTGCTCCTCCTCAAGGTTTT+AGG + chr3_3:38202763-38202782 Msa0451100:intron 50.0%
CTAAATTCGGACGGGGAGAA+TGG - chr3_3:38202791-38202810 None:intergenic 50.0%
CATTCTCCCCGTCCGAATTT+AGG + chr3_3:38202789-38202808 Msa0451100:intron 50.0%
! GATCTCAAGGTTCTGGCAGT+AGG + chr3_3:38204501-38204520 Msa0451100:intron 50.0%
TCTTAGCCAGGAATGCACCA+TGG - chr3_3:38204621-38204640 None:intergenic 50.0%
AAAAGTTTGTGAGCCAGCCC+AGG - chr3_3:38204706-38204725 None:intergenic 50.0%
! GCTGATGTTTTGCTGGTGGA+AGG + chr3_3:38204765-38204784 Msa0451100:intron 50.0%
!! GAGTTGGCGGATTGAATGGT+TGG - chr3_3:38205170-38205189 None:intergenic 50.0%
!! TTGGGAGTTGGCGGATTGAA+TGG - chr3_3:38205174-38205193 None:intergenic 50.0%
CATGACTCTTCGGAAGGAAG+TGG + chr3_3:38205662-38205681 Msa0451100:CDS 50.0%
!! TCCTGTGAGTCATCGGCTTA+TGG + chr3_3:38205773-38205792 Msa0451100:CDS 50.0%
ACCATAAGCCGATGACTCAC+AGG - chr3_3:38205777-38205796 None:intergenic 50.0%
!! TGTGAGTCATCGGCTTATGG+TGG + chr3_3:38205776-38205795 Msa0451100:CDS 50.0%
!! AGTCATCGGCTTATGGTGGA+TGG + chr3_3:38205780-38205799 Msa0451100:CDS 50.0%
TCTGAAGGGATGCAAACTCC+TGG + chr3_3:38205848-38205867 Msa0451100:CDS 50.0%
! CCTATCGACAGGAGTTTTGC+GGG - chr3_3:38206143-38206162 None:intergenic 50.0%
! GCCTATCGACAGGAGTTTTG+CGG - chr3_3:38206144-38206163 None:intergenic 50.0%
CTGTCGATAGGCCCATCATT+GGG + chr3_3:38206152-38206171 Msa0451100:CDS 50.0%
GCAGCAACCATCCCAATGAT+GGG - chr3_3:38206166-38206185 None:intergenic 50.0%
TGCAGCAACCATCCCAATGA+TGG - chr3_3:38206167-38206186 None:intergenic 50.0%
TTGGGATGGTTGCTGCACAT+TGG + chr3_3:38206170-38206189 Msa0451100:CDS 50.0%
TTCAGGACCAGAAAGTGAGC+TGG + chr3_3:38206357-38206376 Msa0451100:intron 50.0%
TAGCATGCCAGCTCACTTTC+TGG - chr3_3:38206367-38206386 None:intergenic 50.0%
GTTCGAAGAGAGGTTGGAGA+AGG + chr3_3:38206391-38206410 Msa0451100:CDS 50.0%
CCAAGCAATCAGCACTGCAT+TGG - chr3_3:38207020-38207039 None:intergenic 50.0%
!! CCAATGCAGTGCTGATTGCT+TGG + chr3_3:38207017-38207036 Msa0451100:three_prime_UTR 50.0%
! GCTTTGTTGTGGTGCCGAGA+CGG - chr3_3:38202253-38202272 None:intergenic 55.0%
ACACGGCACAGACACTGACA+CGG - chr3_3:38202465-38202484 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr3_3:38202737-38202756 Msa0451100:intron 55.0%
GGTTGTCCATGGTGCATTCC+TGG + chr3_3:38204612-38204631 Msa0451100:intron 55.0%
AGCATATGCATGTCCTGGGC+TGG + chr3_3:38204690-38204709 Msa0451100:intron 55.0%
GTTCAGACCACACACCTAGC+AGG + chr3_3:38205229-38205248 Msa0451100:CDS 55.0%
TCTTCGGAAGGAAGTGGGCA+GGG + chr3_3:38205668-38205687 Msa0451100:CDS 55.0%
GGAGCTATCATCCGACCGAT+GGG + chr3_3:38205690-38205709 Msa0451100:CDS 55.0%
CCCGCAAAACTCCTGTCGAT+AGG + chr3_3:38206140-38206159 Msa0451100:CDS 55.0%
!! CCAATGATGGGCCTATCGAC+AGG - chr3_3:38206154-38206173 None:intergenic 55.0%
CCTGTCGATAGGCCCATCAT+TGG + chr3_3:38206151-38206170 Msa0451100:CDS 55.0%
CGATAGGCCCATCATTGGGA+TGG + chr3_3:38206156-38206175 Msa0451100:CDS 55.0%
CTGATGCTCCTCCTCCTAAG+TGG + chr3_3:38206209-38206228 Msa0451100:CDS 55.0%
ATGCTCCTCCTCCTAAGTGG+TGG + chr3_3:38206212-38206231 Msa0451100:CDS 55.0%
TGCTCCTCCTCCTAAGTGGT+GGG + chr3_3:38206213-38206232 Msa0451100:CDS 55.0%
TTGCCATCCCACCACTTAGG+AGG - chr3_3:38206223-38206242 None:intergenic 55.0%
CCATTGCCATCCCACCACTT+AGG - chr3_3:38206226-38206245 None:intergenic 55.0%
! CCTAAGTGGTGGGATGGCAA+TGG + chr3_3:38206223-38206242 Msa0451100:CDS 55.0%
ATGCTACGCCGTTCGAAGAG+AGG + chr3_3:38206381-38206400 Msa0451100:CDS 55.0%
TACGCCGTTCGAAGAGAGGT+TGG + chr3_3:38206385-38206404 Msa0451100:CDS 55.0%
TTCATCCCATCCACAGTCCG+TGG + chr3_3:38206914-38206933 Msa0451100:CDS 55.0%
! GGGGTGTCTCAGTGTCAGAC+AGG + chr3_3:38202366-38202385 Msa0451100:intron 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG + chr3_3:38202736-38202755 Msa0451100:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG - chr3_3:38202757-38202776 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr3_3:38202756-38202775 Msa0451100:intron 60.0%
CTCTTCGGAAGGAAGTGGGC+AGG + chr3_3:38205667-38205686 Msa0451100:CDS 60.0%
CTTCGGAAGGAAGTGGGCAG+GGG + chr3_3:38205669-38205688 Msa0451100:CDS 60.0%
GGGAGCTATCATCCGACCGA+TGG + chr3_3:38205689-38205708 Msa0451100:CDS 60.0%
CCATCCCACCACTTAGGAGG+AGG - chr3_3:38206220-38206239 None:intergenic 60.0%
! CCTCCTCCTAAGTGGTGGGA+TGG + chr3_3:38206217-38206236 Msa0451100:CDS 60.0%
! CAGCGGCGGATTTAGCGTGG+TGG - chr3_3:38202216-38202235 None:intergenic 65.0%
! TGGCAGCGGCGGATTTAGCG+TGG - chr3_3:38202219-38202238 None:intergenic 65.0%
! GTTGTGGTGCCGAGACGGCA+CGG - chr3_3:38202248-38202267 None:intergenic 65.0%
! CGACGCCACGGACTGTGGAT+GGG - chr3_3:38206922-38206941 None:intergenic 65.0%
! ACGACGCCACGGACTGTGGA+TGG - chr3_3:38206923-38206942 None:intergenic 65.0%
! CAACACGACGCCACGGACTG+TGG - chr3_3:38206927-38206946 None:intergenic 65.0%
! GTGGTGCCGAGACGGCACGG+CGG - chr3_3:38202245-38202264 None:intergenic 75.0%
! CCACCGCCGCCGTGCCGTCT+CGG + chr3_3:38202236-38202255 Msa0451100:CDS 80.0%
! GTGCCGAGACGGCACGGCGG+CGG - chr3_3:38202242-38202261 None:intergenic 80.0%
! CACGGCGGCGGTGGCAGCGG+CGG - chr3_3:38202230-38202249 None:intergenic 85.0%
! CGGCACGGCGGCGGTGGCAG+CGG - chr3_3:38202233-38202252 None:intergenic 85.0%
! CCGAGACGGCACGGCGGCGG+TGG - chr3_3:38202239-38202258 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 38201952 38207152 38201952 ID=Msa0451100;Name=Msa0451100
chr3_3 mRNA 38201952 38207152 38201952 ID=Msa0451100-mRNA-1;Parent=Msa0451100;Name=Msa0451100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=217|1|1|1|1|1|7|205|442
chr3_3 exon 38201952 38202276 38201952 ID=Msa0451100-mRNA-1:exon:6872;Parent=Msa0451100-mRNA-1
chr3_3 exon 38203769 38203817 38203769 ID=Msa0451100-mRNA-1:exon:6873;Parent=Msa0451100-mRNA-1
chr3_3 exon 38203927 38204006 38203927 ID=Msa0451100-mRNA-1:exon:6874;Parent=Msa0451100-mRNA-1
chr3_3 exon 38205003 38205250 38205003 ID=Msa0451100-mRNA-1:exon:6875;Parent=Msa0451100-mRNA-1
chr3_3 exon 38205625 38206276 38205625 ID=Msa0451100-mRNA-1:exon:6876;Parent=Msa0451100-mRNA-1
chr3_3 exon 38206362 38206444 38206362 ID=Msa0451100-mRNA-1:exon:6877;Parent=Msa0451100-mRNA-1
chr3_3 exon 38206839 38207152 38206839 ID=Msa0451100-mRNA-1:exon:6878;Parent=Msa0451100-mRNA-1
chr3_3 five_prime_UTR 38201952 38202168 38201952 ID=Msa0451100-mRNA-1:five_prime_utr;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38202169 38202276 38202169 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38203769 38203817 38203769 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38203927 38204006 38203927 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38205003 38205250 38205003 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38205625 38206276 38205625 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38206362 38206444 38206362 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 CDS 38206839 38206947 38206839 ID=Msa0451100-mRNA-1:cds;Parent=Msa0451100-mRNA-1
chr3_3 three_prime_UTR 38206948 38207152 38206948 ID=Msa0451100-mRNA-1:three_prime_utr;Parent=Msa0451100-mRNA-1
Gene Sequence

>Msa0451100

ATGGGTTGCCTTTTCACTTGCTTTCGTGTTCGTGATAACAAACGCCACCACGCTAAATCCGCCGCTGCCACCGCCGCCGTGCCGTCTCGGCACCACAACAAAGCCAATGATGATGTGGCGTCTCGAAACCGTTTGTCTACTTTGTTTCTGACCGAAGAGGGAGAAGACAATGTGCATCGTAATGGGAGAAGTTTTGAGGAGGGATCACAGAGTGATGATAGGCAGCTTAAAGACGAGGCAAAGTTTCTTAAAGCTTGTGGTACCATAGCAAGTACCCCTACTGAAATTCGGAAAGCATCGGAGAAACTAAAAGTGTCACCTTCATGTAGTAACGATTCTGGTCCTCCAAAGTTTCGTTCTTGGCTTCTTGATACATCTGCTGAGAATGTTCCAACTAATGTCCAACCATTCAATCCGCCAACTCCCAAAAAACAATGTGAAGAATGGGAGAAAATAACAGATTGTTCAGACCACACACCTAGCAGCTGTATCTCCAATGCACACAATACTCAATGGGAATATCATGACTCTTCGGAAGGAAGTGGGCAGGGGAGCTATCATCCGACCGATGGGACTGAAATGAATAAGGGGAGGAACAAGTCCGTACGTTTTGAATGTGATACTGATATTTCATCCTGTGAGTCATCGGCTTATGGTGGATGGCGTACGAAGAAAACAGAGTCACCAAATCCTACCCCAATGAAGATATCTGAAGGGATGCAAACTCCTGGAACTGTTTACCCTGTTAAGTCCCAGTTTGTGTATCCAAATAACAGCCTAGGTGAGGATGTCTCTAAGAGCAAGATACTTGAGGAAGAGGATTATGTTCCTGCGCAAGATTCAAGGAAGATGAACAAGTCAATTGAGCAGTCTCAAAATGCAACGTCTACACCAGATAAAAGTGAATCTACCGTGGAAGAAGGCTTGTCTTCTTGGTTGAAGCCTGCATCTGTTATTTTGGAGGAGAGAAGAAAGAAAATGGAGATGGCTTATAATCAGACCCGCAAAACTCCTGTCGATAGGCCCATCATTGGGATGGTTGCTGCACATTGGATTGAAGAGGAAAATTCTGATGCTCCTCCTCCTAAGTGGTGGGATGGCAATGGCATACCAAATTCAACCAACAAATACAAAGAAGACCAGAAAGTGAGCTGGCATGCTACGCCGTTCGAAGAGAGGTTGGAGAAGGCATTATCTGAGGATACTATCATCGCTCAAAGGAAAGATATTTGCGGAAAACCAATTGCTTTTGATGAGAATGAAGAAAGCGATACTGCATTGTCTCATTTGAAATCTTCATCCCATCCACAGTCCGTGGCGTCGTGTTGA

Protein sequence

>Msa0451100

MGCLFTCFRVRDNKRHHAKSAAATAAVPSRHHNKANDDVASRNRLSTLFLTEEGEDNVHRNGRSFEEGSQSDDRQLKDEAKFLKACGTIASTPTEIRKASEKLKVSPSCSNDSGPPKFRSWLLDTSAENVPTNVQPFNPPTPKKQCEEWEKITDCSDHTPSSCISNAHNTQWEYHDSSEGSGQGSYHPTDGTEMNKGRNKSVRFECDTDISSCESSAYGGWRTKKTESPNPTPMKISEGMQTPGTVYPVKSQFVYPNNSLGEDVSKSKILEEEDYVPAQDSRKMNKSIEQSQNATSTPDKSESTVEEGLSSWLKPASVILEERRKKMEMAYNQTRKTPVDRPIIGMVAAHWIEEENSDAPPPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEDTIIAQRKDICGKPIAFDENEESDTALSHLKSSSHPQSVASC*