Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0350110 | KEH33680.1 | 93.679 | 443 | 23 | 5 | 1 | 442 | 1 | 439 | 0.0 | 838 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0350110 | sp|F4IDQ5|JASON_ARATH | 38.272 | 486 | 221 | 17 | 1 | 441 | 29 | 480 | 1.82e-70 | 233 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0350110 | A0A072V681 | 93.679 | 443 | 23 | 5 | 1 | 442 | 1 | 439 | 0.0 | 838 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0094180 | Msa0350110 | 0.828050 | 1.115110e-54 | -8.615850e-47 |
Msa0225800 | Msa0350110 | 0.803273 | 3.771995e-49 | -8.615850e-47 |
Msa0260570 | Msa0350110 | 0.830399 | 3.001586e-55 | -8.615850e-47 |
Msa0260630 | Msa0350110 | 0.831313 | 1.791373e-55 | -8.615850e-47 |
Msa0281540 | Msa0350110 | 0.812983 | 3.222077e-51 | -8.615850e-47 |
Msa0344110 | Msa0350110 | 0.800378 | 1.482539e-48 | -8.615850e-47 |
Msa0350110 | Msa0405080 | 0.876219 | 1.661174e-68 | -8.615850e-47 |
Msa0350110 | Msa0451100 | 0.893057 | 8.955807e-75 | -8.615850e-47 |
Msa0350110 | Msa0498370 | 0.904919 | 7.418745e-80 | -8.615850e-47 |
Msa0350110 | Msa0554300 | 0.813362 | 2.660121e-51 | -8.615850e-47 |
Msa0350110 | Msa0647440 | 0.836472 | 9.171315e-57 | -8.615850e-47 |
Msa0350110 | Msa0648760 | 0.808684 | 2.744931e-50 | -8.615850e-47 |
Msa0350110 | Msa0690320 | 0.836765 | 7.724386e-57 | -8.615850e-47 |
Msa0350110 | Msa1008850 | 0.804473 | 2.124035e-49 | -8.615850e-47 |
Msa0350110 | Msa1078080 | 0.825589 | 4.317842e-54 | -8.615850e-47 |
Msa0350110 | Msa1106220 | 0.801230 | 9.929947e-49 | -8.615850e-47 |
Msa0350110 | Msa1169170 | 0.802144 | 6.448015e-49 | -8.615850e-47 |
Msa0350110 | Msa1294790 | 0.812172 | 4.846445e-51 | -8.615850e-47 |
Msa0350110 | Msa1400780 | 0.834822 | 2.399204e-56 | -8.615850e-47 |
Msa0350110 | Msa1419900 | 0.823184 | 1.587625e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0350110 | MtrunA17_Chr3g0095751 | 93.679 | 443 | 23 | 5 | 1 | 442 | 25 | 463 | 0.0 | 837 |
Msa0350110 | MtrunA17_Chr5g0442731 | 45.259 | 464 | 198 | 10 | 1 | 422 | 24 | 473 | 1.39e-114 | 344 |
Msa0350110 | MtrunA17_Chr1g0183391 | 39.683 | 126 | 62 | 4 | 284 | 401 | 317 | 436 | 3.68e-15 | 77.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0350110 | AT1G06660.1 | 38.272 | 486 | 221 | 17 | 1 | 441 | 29 | 480 | 1.85e-71 | 233 |
Msa0350110 | AT2G30820.2 | 34.328 | 469 | 220 | 13 | 1 | 433 | 1 | 417 | 2.22e-60 | 202 |
Msa0350110 | AT2G30820.1 | 34.328 | 469 | 220 | 13 | 1 | 433 | 1 | 417 | 2.22e-60 | 202 |
Find 151 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCACCTAGGCTGTTATT+TGG | 0.189762 | 3_1:+14657241 | None:intergenic |
GTCCTCCAAAGTTTCGTTCT+TGG | 0.196344 | 3_1:-14658041 | Msa0350110:CDS |
AGGATTGTTGGGTTAAATAT+TGG | 0.204732 | 3_1:-14656032 | Msa0350110:three_prime_UTR |
GAAGCCTGCATCTGTTATTT+TGG | 0.212458 | 3_1:-14657068 | Msa0350110:CDS |
TAGCATGCCAGCTCACTTTC+TGG | 0.229927 | 3_1:+14656782 | None:intergenic |
TTGTATTTGTTGGTTGAATT+TGG | 0.246872 | 3_1:+14656896 | None:intergenic |
TGGAAGAAGGCTTGTCTTCT+TGG | 0.254792 | 3_1:-14657093 | Msa0350110:CDS |
CGATGGGACTGAAATGAATA+AGG | 0.261654 | 3_1:-14657440 | Msa0350110:CDS |
GGAGGAGAGAAGAAAGAAAA+TGG | 0.286742 | 3_1:-14657047 | Msa0350110:CDS |
ATCTTCATTGGGGTAGGATT+TGG | 0.293500 | 3_1:+14657322 | None:intergenic |
CGGTACGGCGGCGGTGGCGG+CGG | 0.303940 | 3_1:+14660762 | None:intergenic |
TCTTCAATGATATGCTCTTC+TGG | 0.313976 | 3_1:-14660907 | Msa0350110:five_prime_UTR |
TCCTGTGAGTCATCGGCTTA+TGG | 0.325210 | 3_1:-14657373 | Msa0350110:CDS |
TCATACTTCTTTGTATTTGT+TGG | 0.327303 | 3_1:+14656886 | None:intergenic |
GGATTGTTGGGTTAAATATT+GGG | 0.336604 | 3_1:-14656031 | Msa0350110:three_prime_UTR |
TACACAAACTGGGACTTAAC+AGG | 0.339806 | 3_1:+14657265 | None:intergenic |
AGCACTGCATTGGGACTTAA+TGG | 0.349682 | 3_1:+14656139 | None:intergenic |
ATCCCTTCAGATATCTTCAT+TGG | 0.349727 | 3_1:+14657310 | None:intergenic |
CCTGACCTACCTTCTTCACT+TGG | 0.366149 | 3_1:-14660934 | Msa0350110:five_prime_UTR |
GAAGACAATGTGCATCATAA+TGG | 0.368361 | 3_1:-14659059 | Msa0350110:CDS |
CCTTCATGTAGTAACGATTC+TGG | 0.376618 | 3_1:-14658063 | Msa0350110:CDS |
TTGAATGGTTGGACATTAGT+TGG | 0.377570 | 3_1:+14657991 | None:intergenic |
TGTTATTTGGATACACAAAC+TGG | 0.390899 | 3_1:+14657254 | None:intergenic |
AGACGGTACGGCGGCGGTGG+CGG | 0.391537 | 3_1:+14660759 | None:intergenic |
TACGGCGGCGGTGGCGGCGG+CGG | 0.400440 | 3_1:+14660765 | None:intergenic |
TCCCTTCAGATATCTTCATT+GGG | 0.406133 | 3_1:+14657311 | None:intergenic |
TGGGTTAAATATTGGGCATT+GGG | 0.410553 | 3_1:-14656024 | Msa0350110:three_prime_UTR |
TCATTCTCATCAAAAGCAAT+TGG | 0.422122 | 3_1:+14656288 | None:intergenic |
TTGGGAGTTGGCGGATTGAA+TGG | 0.422674 | 3_1:+14657976 | None:intergenic |
CAAGTACCCCTACTGAAATT+CGG | 0.424717 | 3_1:-14658113 | Msa0350110:CDS |
CCGAGACGGTACGGCGGCGG+TGG | 0.430734 | 3_1:+14660756 | None:intergenic |
TGCAGCAACCATCCCAATGA+TGG | 0.431713 | 3_1:+14656982 | None:intergenic |
TATATTTGATGAGGATTGTT+GGG | 0.432129 | 3_1:-14656043 | Msa0350110:three_prime_UTR |
TTGGGTTAAATATTGGGCAT+TGG | 0.435150 | 3_1:-14656025 | Msa0350110:three_prime_UTR |
ATGTTCCTGCGCAAGATTCA+AGG | 0.435844 | 3_1:-14657183 | Msa0350110:CDS |
AGGGATCACAGAGTGATGAT+AGG | 0.453830 | 3_1:-14659022 | Msa0350110:CDS |
CCTGTCGATAGGCCCATCAT+TGG | 0.456758 | 3_1:-14656995 | Msa0350110:CDS |
CCAAGCAATCAGCACTGCAT+TGG | 0.458893 | 3_1:+14656129 | None:intergenic |
AAGACAATGTGCATCATAAT+GGG | 0.462453 | 3_1:-14659058 | Msa0350110:CDS |
CAAGCAATCAGCACTGCATT+GGG | 0.465777 | 3_1:+14656130 | None:intergenic |
TTAACAGGGTAAACAGTTCC+AGG | 0.469267 | 3_1:+14657280 | None:intergenic |
GAGCAAGATACTTGAGGAAG+AGG | 0.471401 | 3_1:-14657209 | Msa0350110:CDS |
CCACCGCCGCCGTACCGTCT+CGG | 0.482855 | 3_1:-14660756 | Msa0350110:CDS |
AGAAGCCAAGAACGAAACTT+TGG | 0.484007 | 3_1:+14658036 | None:intergenic |
AATATTGGGCATTGGGAGAT+CGG | 0.485654 | 3_1:-14656017 | Msa0350110:three_prime_UTR |
TCCTCCAAAATAACAGATGC+AGG | 0.487575 | 3_1:+14657064 | None:intergenic |
GATGGGACTGAAATGAATAA+GGG | 0.488622 | 3_1:-14657439 | Msa0350110:CDS |
TCAAATATATACAATACAAG+TGG | 0.489054 | 3_1:+14656057 | None:intergenic |
ACGACGCCACGGACTGTGGA+TGG | 0.492778 | 3_1:+14656226 | None:intergenic |
ATGGGAATATCATGACTCTT+CGG | 0.494202 | 3_1:-14657494 | Msa0350110:CDS |
CCAATGCACACAATACTCAA+TGG | 0.495131 | 3_1:-14657513 | Msa0350110:CDS |
CCAAGTGAAGAAGGTAGGTC+AGG | 0.497945 | 3_1:+14660934 | None:intergenic |
GTCCATCTCATTACTCTATG+AGG | 0.502624 | 3_1:-14656184 | Msa0350110:three_prime_UTR |
GCAAAGTTTCTTAAAGCTTG+TGG | 0.503956 | 3_1:-14658144 | Msa0350110:CDS |
ATCTTCCTTGAATCTTGCGC+AGG | 0.504663 | 3_1:+14657178 | None:intergenic |
CAATGCACACAATACTCAAT+GGG | 0.505196 | 3_1:-14657512 | Msa0350110:CDS |
TTCAGTAGGGGTACTTGCTA+TGG | 0.505440 | 3_1:+14658119 | None:intergenic |
CTCTTCGGAAGGAAGTGGGC+AGG | 0.505993 | 3_1:-14657479 | Msa0350110:CDS |
GAAGAGGACCCAAGTGAAGA+AGG | 0.507890 | 3_1:+14660925 | None:intergenic |
CCAATGATGGGCCTATCGAC+AGG | 0.508176 | 3_1:+14656995 | None:intergenic |
ATATATTTGATGAGGATTGT+TGG | 0.511343 | 3_1:-14656044 | Msa0350110:three_prime_UTR |
CCAATGCAGTGCTGATTGCT+TGG | 0.511818 | 3_1:-14656129 | Msa0350110:three_prime_UTR |
CCATTGAGTATTGTGTGCAT+TGG | 0.512181 | 3_1:+14657513 | None:intergenic |
CTTCGGAAGGAAGTGGGCAG+GGG | 0.512249 | 3_1:-14657477 | Msa0350110:CDS |
TGCTCCTCCTCCTAAGTGGT+GGG | 0.512880 | 3_1:-14656933 | Msa0350110:CDS |
CATGACTCTTCGGAAGGAAG+TGG | 0.514139 | 3_1:-14657484 | Msa0350110:CDS |
GATGCTTTCCGAATTTCAGT+AGG | 0.514555 | 3_1:+14658105 | None:intergenic |
CTGTCGATAGGCCCATCATT+GGG | 0.516223 | 3_1:-14656994 | Msa0350110:CDS |
CAACACGACGCCACGGACTG+TGG | 0.521235 | 3_1:+14656222 | None:intergenic |
TCTTCGGAAGGAAGTGGGCA+GGG | 0.526061 | 3_1:-14657478 | Msa0350110:CDS |
TATTTCATCCTGTGAGTCAT+CGG | 0.528657 | 3_1:-14657380 | Msa0350110:CDS |
ATGCTCCTCCTCCTAAGTGG+TGG | 0.530708 | 3_1:-14656934 | Msa0350110:CDS |
GAGAAGAAAGAAAATGGAGA+TGG | 0.532138 | 3_1:-14657041 | Msa0350110:CDS |
GTGCCGAGACGGTACGGCGG+CGG | 0.532941 | 3_1:+14660753 | None:intergenic |
TTAAAGATTAATAACCTGCT+AGG | 0.536769 | 3_1:+14657904 | None:intergenic |
AGTGAATCTACCGTGGAAGA+AGG | 0.537717 | 3_1:-14657106 | Msa0350110:CDS |
TCTACTTTGTTTCTGACCGA+AGG | 0.540444 | 3_1:-14659197 | Msa0350110:intron |
GTTCACAGGAAAGATATTTG+CGG | 0.540461 | 3_1:-14656315 | Msa0350110:intron |
CTTATTCATTTCAGTCCCAT+CGG | 0.540593 | 3_1:+14657441 | None:intergenic |
CTGACCTACCTTCTTCACTT+GGG | 0.541465 | 3_1:-14660933 | Msa0350110:five_prime_UTR |
GAGTTGGCGGATTGAATGGT+TGG | 0.541865 | 3_1:+14657980 | None:intergenic |
GTTCAGACCACACACCTAGC+AGG | 0.546465 | 3_1:-14657918 | Msa0350110:intron |
AGAAAGAGAGAGAGTGTGTG+AGG | 0.547849 | 3_1:+14661044 | None:intergenic |
TCAGATATCTTCATTGGGGT+AGG | 0.551648 | 3_1:+14657316 | None:intergenic |
AGTATCACATTCAAAACATA+CGG | 0.552280 | 3_1:+14657405 | None:intergenic |
TTCATTTCAGTCCCATCGGT+CGG | 0.552448 | 3_1:+14657445 | None:intergenic |
ATGCTTTCCGAATTTCAGTA+GGG | 0.554306 | 3_1:+14658106 | None:intergenic |
GTTGTGGTGCCGAGACGGTA+CGG | 0.555465 | 3_1:+14660747 | None:intergenic |
GGGAGCTATCATCCGACCGA+TGG | 0.556557 | 3_1:-14657457 | Msa0350110:CDS |
ACATTACATTGGCTTTGTTG+TGG | 0.556918 | 3_1:+14660731 | None:intergenic |
GAACACGAAAGCAAGTGAAA+AGG | 0.559259 | 3_1:+14660815 | None:intergenic |
TTCAGGACCAGAAAGTGAGC+TGG | 0.559748 | 3_1:-14656789 | Msa0350110:intron |
ACCATAAGCCGATGACTCAC+AGG | 0.559884 | 3_1:+14657372 | None:intergenic |
CCATTGCCATCCCACCACTT+AGG | 0.560739 | 3_1:+14656923 | None:intergenic |
CCTCCTCCTAAGTGGTGGGA+TGG | 0.560739 | 3_1:-14656929 | Msa0350110:CDS |
TCTGAAGGGATGCAAACTCC+TGG | 0.562862 | 3_1:-14657298 | Msa0350110:CDS |
TGTATTGTATATATTTGATG+AGG | 0.567911 | 3_1:-14656052 | Msa0350110:three_prime_UTR |
CGACGCCACGGACTGTGGAT+GGG | 0.567931 | 3_1:+14656227 | None:intergenic |
CCTAAGTGGTGGGATGGCAA+TGG | 0.569676 | 3_1:-14656923 | Msa0350110:CDS |
GTGTATCCAAATAACAGCCT+AGG | 0.571499 | 3_1:-14657247 | Msa0350110:CDS |
ATGCTACGCCGTTCGAAGAG+AGG | 0.575521 | 3_1:-14656765 | Msa0350110:CDS |
CAAATATATACAATACAAGT+GGG | 0.576971 | 3_1:+14656058 | None:intergenic |
ACCCCAATGAAGATATCTGA+AGG | 0.577653 | 3_1:-14657313 | Msa0350110:CDS |
CCATCCCACCACTTAGGAGG+AGG | 0.578549 | 3_1:+14656929 | None:intergenic |
TGGCGGCGGCGGATTTAGCG+TGG | 0.579596 | 3_1:+14660776 | None:intergenic |
TTGGGATGGTTGCTGCACAT+TGG | 0.584288 | 3_1:-14656976 | Msa0350110:CDS |
GGAGCTATCATCCGACCGAT+GGG | 0.587580 | 3_1:-14657456 | Msa0350110:CDS |
GGCGTCGTGTTGATATCTAT+AGG | 0.588523 | 3_1:-14656211 | Msa0350110:exon |
GTTCGAAGAGAGGTTGGAGA+AGG | 0.592220 | 3_1:-14656755 | Msa0350110:CDS |
CGATAGGCCCATCATTGGGA+TGG | 0.592976 | 3_1:-14656990 | Msa0350110:CDS |
AGCCAAGAACGAAACTTTGG+AGG | 0.594708 | 3_1:+14658039 | None:intergenic |
TAGATATCAACACGACGCCA+CGG | 0.596729 | 3_1:+14656215 | None:intergenic |
AGAAGAGCATATCATTGAAG+AGG | 0.597460 | 3_1:+14660909 | None:intergenic |
TACTGAAATTCGGAAAGCAT+CGG | 0.598546 | 3_1:-14658103 | Msa0350110:CDS |
TTCTCCAACCTCTCTTCGAA+CGG | 0.599277 | 3_1:+14656757 | None:intergenic |
TACCTCATAGAGTAATGAGA+TGG | 0.599918 | 3_1:+14656182 | None:intergenic |
AGTCATCGGCTTATGGTGGA+TGG | 0.599998 | 3_1:-14657366 | Msa0350110:CDS |
GCAGCAACCATCCCAATGAT+GGG | 0.601660 | 3_1:+14656983 | None:intergenic |
CTGATGCTCCTCCTCCTAAG+TGG | 0.601801 | 3_1:-14656937 | Msa0350110:CDS |
TCCAAATAACAGCCTAGGTG+AGG | 0.601979 | 3_1:-14657242 | Msa0350110:CDS |
CTCTAAGAGCAAGATACTTG+AGG | 0.603618 | 3_1:-14657215 | Msa0350110:CDS |
TTGCCATCCCACCACTTAGG+AGG | 0.606952 | 3_1:+14656926 | None:intergenic |
TACGCCGTTCGAAGAGAGGT+TGG | 0.606989 | 3_1:-14656761 | Msa0350110:CDS |
AGGACCCAAGTGAAGAAGGT+AGG | 0.610700 | 3_1:+14660929 | None:intergenic |
TGATAGGCAGCTTAAAGATG+AGG | 0.611968 | 3_1:-14659006 | Msa0350110:intron |
CCCTTCAGATATCTTCATTG+GGG | 0.615934 | 3_1:+14657312 | None:intergenic |
CCAGAATCGTTACTACATGA+AGG | 0.617304 | 3_1:+14658063 | None:intergenic |
ATGACTCTTCGGAAGGAAGT+GGG | 0.617710 | 3_1:-14657483 | Msa0350110:CDS |
TGCTTTCCGAATTTCAGTAG+GGG | 0.618402 | 3_1:+14658107 | None:intergenic |
AGGATACTATCATCGCTCAA+AGG | 0.620789 | 3_1:-14656723 | Msa0350110:intron |
CCCGCAAAACTCCTGTCGAT+AGG | 0.624406 | 3_1:-14657006 | Msa0350110:CDS |
AGAAGACAAGCCTTCTTCCA+CGG | 0.626278 | 3_1:+14657096 | None:intergenic |
GCTTTGTTGTGGTGCCGAGA+CGG | 0.627219 | 3_1:+14660742 | None:intergenic |
TTCATCCCATCCACAGTCCG+TGG | 0.627583 | 3_1:-14656232 | Msa0350110:CDS |
CGGCGGCGGATTTAGCGTGG+TGG | 0.627645 | 3_1:+14660779 | None:intergenic |
CCCCAATGAAGATATCTGAA+GGG | 0.632021 | 3_1:-14657312 | Msa0350110:CDS |
GAATATCATGACTCTTCGGA+AGG | 0.632054 | 3_1:-14657490 | Msa0350110:CDS |
CTTTGTAAAGCAGGATGATG+TGG | 0.633113 | 3_1:-14659237 | Msa0350110:intron |
TGCTGCACATTGGATTGAAG+AGG | 0.634738 | 3_1:-14656966 | Msa0350110:CDS |
ACACAAACTGGGACTTAACA+GGG | 0.635382 | 3_1:+14657266 | None:intergenic |
TGTGAGTCATCGGCTTATGG+TGG | 0.636034 | 3_1:-14657370 | Msa0350110:CDS |
TTAATAACCTGCTAGGTGTG+TGG | 0.641765 | 3_1:+14657911 | None:intergenic |
GTTGGAGAAGGCATTATCTG+AGG | 0.647231 | 3_1:-14656743 | Msa0350110:CDS |
ATGGGACTGAAATGAATAAG+GGG | 0.654668 | 3_1:-14657438 | Msa0350110:CDS |
ATTTGAATATGGAAATGATG+AGG | 0.659753 | 3_1:+14661017 | None:intergenic |
GTTATTTGGATACACAAACT+GGG | 0.662575 | 3_1:+14657255 | None:intergenic |
ACAATGTGCATCATAATGGG+AGG | 0.665914 | 3_1:-14659055 | Msa0350110:CDS |
AGATAAAAGTGAATCTACCG+TGG | 0.669633 | 3_1:-14657113 | Msa0350110:CDS |
TCTTAGAGACATCCTCACCT+AGG | 0.675023 | 3_1:+14657230 | None:intergenic |
GGACTGAAATGAATAAGGGG+AGG | 0.697836 | 3_1:-14657435 | Msa0350110:CDS |
GTGGTGCCGAGACGGTACGG+CGG | 0.758212 | 3_1:+14660750 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATATTAATAGTTTTAAC+GGG | - | chr3_1:14657622-14657641 | Msa0350110:intron | 10.0% |
!!! | TTGTTTTTTGAATTTGAATA+TGG | + | chr3_1:14656056-14656075 | None:intergenic | 15.0% |
!! | TACAAAAAATAAACAAGAAA+CGG | + | chr3_1:14656373-14656392 | None:intergenic | 15.0% |
!! | AAACTTAATTCAATAATCAT+AGG | + | chr3_1:14656476-14656495 | None:intergenic | 15.0% |
!! | AAAAAATTGTTAAATAGGAA+TGG | - | chr3_1:14656625-14656644 | Msa0350110:intron | 15.0% |
!! | AAAAATTGTTAAATAGGAAT+GGG | - | chr3_1:14656626-14656645 | Msa0350110:intron | 15.0% |
!!! | GATTAATTTTATCGATTTAA+AGG | - | chr3_1:14656722-14656741 | Msa0350110:intron | 15.0% |
!!! | TTTAGGTTTTTTTTTTTTGT+TGG | - | chr3_1:14656973-14656992 | Msa0350110:CDS | 15.0% |
!!! | ATTTACTGAAATTTTAGTTT+TGG | - | chr3_1:14657217-14657236 | Msa0350110:CDS | 15.0% |
!!! | AAATATTAATAGTTTTAACG+GGG | - | chr3_1:14657623-14657642 | Msa0350110:intron | 15.0% |
!!! | AAGATCTTTAATAGTTTTAA+TGG | - | chr3_1:14657719-14657738 | Msa0350110:intron | 15.0% |
!!! | CTTTTACAATTTTAATGTTA+TGG | - | chr3_1:14657928-14657947 | Msa0350110:CDS | 15.0% |
!!! | TTTAACCTTTTTTTTTTGAA+AGG | - | chr3_1:14659173-14659192 | Msa0350110:intron | 15.0% |
!! | TGAAAAGGTTATATTTAATA+TGG | + | chr3_1:14659490-14659509 | None:intergenic | 15.0% |
!! | TAATGAATTGAAAAATGGAT+CGG | + | chr3_1:14656217-14656236 | None:intergenic | 20.0% |
!!! | ATCCATTTTTCAATTCATTA+TGG | - | chr3_1:14656217-14656236 | Msa0350110:exon | 20.0% |
!!! | TCCATTTTTCAATTCATTAT+GGG | - | chr3_1:14656218-14656237 | Msa0350110:exon | 20.0% |
!! | TGTGGAAAAAATTGTTAAAT+AGG | - | chr3_1:14656620-14656639 | Msa0350110:intron | 20.0% |
!! | ATGAAATTGTGAAATGATAA+TGG | - | chr3_1:14656748-14656767 | Msa0350110:CDS | 20.0% |
!!! | AAATGTTAGTTTAATTAAGC+TGG | - | chr3_1:14656669-14656688 | Msa0350110:intron | 20.0% |
!!! | TTTTTTGAAGAACCTAAATT+CGG | + | chr3_1:14656875-14656894 | None:intergenic | 20.0% |
!! | CTTCAAAAAAAAAATTAAGC+TGG | - | chr3_1:14656885-14656904 | Msa0350110:intron | 20.0% |
!! | AAAAAAAATTAAGCTGGATT+TGG | - | chr3_1:14656891-14656910 | Msa0350110:intron | 20.0% |
!!! | TTTTATGAATTTGTTGATTG+CGG | - | chr3_1:14656933-14656952 | Msa0350110:CDS | 20.0% |
!!! | TAGGTTTGTTATTGATTTAA+AGG | - | chr3_1:14657171-14657190 | Msa0350110:CDS | 20.0% |
!!! | TAGCTTTGTTATTGATTTAA+TGG | - | chr3_1:14657377-14657396 | Msa0350110:CDS | 20.0% |
!!! | GAAATTTTAATAGCTTTGTT+TGG | - | chr3_1:14657469-14657488 | Msa0350110:CDS | 20.0% |
!! | AGCAAAATAAAATTTACCTT+CGG | + | chr3_1:14657881-14657900 | None:intergenic | 20.0% |
!!! | TGGTTTTAAATTTTGAAAAG+AGG | - | chr3_1:14657975-14657994 | Msa0350110:CDS | 20.0% |
!!! | GGTTTTAAATTTTGAAAAGA+GGG | - | chr3_1:14657976-14657995 | Msa0350110:CDS | 20.0% |
!!! | TCTCTTTACTTTTTTAATGA+AGG | - | chr3_1:14658505-14658524 | Msa0350110:intron | 20.0% |
!!! | TTAAGTTTGTTTACATGATT+TGG | - | chr3_1:14658878-14658897 | Msa0350110:intron | 20.0% |
!!! | AAAATTGGTGTTTTAGAAAA+TGG | - | chr3_1:14659379-14659398 | Msa0350110:intron | 20.0% |
!!! | TTTCCCTTTTAGATTTTTTA+AGG | - | chr3_1:14659421-14659440 | Msa0350110:intron | 20.0% |
!!! | TTCCCTTTTAGATTTTTTAA+GGG | - | chr3_1:14659422-14659441 | Msa0350110:intron | 20.0% |
!!! | AAAGAAATTAACTTCTGAAA+AGG | + | chr3_1:14659505-14659524 | None:intergenic | 20.0% |
!!! | AATATCGTTTTAACTTTCAA+AGG | + | chr3_1:14660405-14660424 | None:intergenic | 20.0% |
!! | CAAATATATACAATACAAGT+GGG | + | chr3_1:14661004-14661023 | None:intergenic | 20.0% |
!! | TCAAATATATACAATACAAG+TGG | + | chr3_1:14661005-14661024 | None:intergenic | 20.0% |
!! | TGTATTGTATATATTTGATG+AGG | - | chr3_1:14661007-14661026 | Msa0350110:five_prime_UTR | 20.0% |
! | ATTTGAATATGGAAATGATG+AGG | + | chr3_1:14656045-14656064 | None:intergenic | 25.0% |
! | ACCCATAATGAATTGAAAAA+TGG | + | chr3_1:14656222-14656241 | None:intergenic | 25.0% |
! | GATTATGAGTTACATTACAT+TGG | + | chr3_1:14656342-14656361 | None:intergenic | 25.0% |
!! | AATTCCAAGAATTTTTGTTG+TGG | - | chr3_1:14656602-14656621 | Msa0350110:intron | 25.0% |
!! | TTTTCCACAACAAAAATTCT+TGG | + | chr3_1:14656609-14656628 | None:intergenic | 25.0% |
!! | AGTTTAATTAAGCTGGATTT+TGG | - | chr3_1:14656781-14656800 | Msa0350110:CDS | 25.0% |
!! | GTTTAATTAAGCTGGATTTT+GGG | - | chr3_1:14656782-14656801 | Msa0350110:CDS | 25.0% |
!!! | TTTATGAATTTGTTGATTGC+GGG | - | chr3_1:14656934-14656953 | Msa0350110:CDS | 25.0% |
!!! | GTTCTGGTTTTTGATATTTT+AGG | - | chr3_1:14656956-14656975 | Msa0350110:CDS | 25.0% |
! | GAAATTCGTTTATGAAATGA+TGG | - | chr3_1:14656998-14657017 | Msa0350110:CDS | 25.0% |
! | GTTGAAATGATAGCTTAATT+CGG | - | chr3_1:14657078-14657097 | Msa0350110:CDS | 25.0% |
!!! | TTTGGATTTTTTGTGTGTTT+AGG | - | chr3_1:14657152-14657171 | Msa0350110:CDS | 25.0% |
! | AGGATTATGAAATGTAATGA+TGG | - | chr3_1:14657191-14657210 | Msa0350110:CDS | 25.0% |
! | ATGATGAATTTGTAGATTTC+AGG | - | chr3_1:14657315-14657334 | Msa0350110:CDS | 25.0% |
! | GTTGAGATAATAGCTTAATT+CGG | - | chr3_1:14657510-14657529 | Msa0350110:CDS | 25.0% |
!!! | ATGATGAATTTGTTGATTAC+AGG | - | chr3_1:14657563-14657582 | Msa0350110:intron | 25.0% |
! | TCAGTAATGTACTAATTTAG+TGG | - | chr3_1:14657955-14657974 | Msa0350110:CDS | 25.0% |
! | ATAGTTCAATTCAATACTTG+AGG | + | chr3_1:14658207-14658226 | None:intergenic | 25.0% |
!! | TGCTTTAACTTAGTTAATGT+AGG | - | chr3_1:14658327-14658346 | Msa0350110:intron | 25.0% |
!! | CATTGTAATTTTCTTTCACA+AGG | - | chr3_1:14658405-14658424 | Msa0350110:intron | 25.0% |
!! | TTAATGAAGGTAGAATTTTC+TGG | - | chr3_1:14658518-14658537 | Msa0350110:intron | 25.0% |
!! | TAATGAAGGTAGAATTTTCT+GGG | - | chr3_1:14658519-14658538 | Msa0350110:intron | 25.0% |
! | GACATACTAGATAGTTATAT+AGG | + | chr3_1:14658586-14658605 | None:intergenic | 25.0% |
! | AATAGACAAATGACTTAAAC+AGG | + | chr3_1:14658827-14658846 | None:intergenic | 25.0% |
!!! | CATTCTTCACATTGTTTTTT+GGG | + | chr3_1:14659104-14659123 | None:intergenic | 25.0% |
! | CAAAAAACAATGTGAAGAAT+GGG | - | chr3_1:14659103-14659122 | Msa0350110:intron | 25.0% |
! | TTAAAGATTAATAACCTGCT+AGG | + | chr3_1:14659158-14659177 | None:intergenic | 25.0% |
! | GATTGCCTTTCAAAAAAAAA+AGG | + | chr3_1:14659181-14659200 | None:intergenic | 25.0% |
! | TGCCCTTAAAAAATCTAAAA+GGG | + | chr3_1:14659427-14659446 | None:intergenic | 25.0% |
! | ATGCCCTTAAAAAATCTAAA+AGG | + | chr3_1:14659428-14659447 | None:intergenic | 25.0% |
!!! | TTTTTTAAGGGCATATCTTA+TGG | - | chr3_1:14659434-14659453 | Msa0350110:intron | 25.0% |
!!! | TTTTTAAGGGCATATCTTAT+GGG | - | chr3_1:14659435-14659454 | Msa0350110:intron | 25.0% |
! | AGTATCACATTCAAAACATA+CGG | + | chr3_1:14659657-14659676 | None:intergenic | 25.0% |
!! | TTGTATTTGTTGGTTGAATT+TGG | + | chr3_1:14660166-14660185 | None:intergenic | 25.0% |
! | TCATACTTCTTTGTATTTGT+TGG | + | chr3_1:14660176-14660195 | None:intergenic | 25.0% |
! | GAAAACAATCAGCATTAATT+AGG | + | chr3_1:14660253-14660272 | None:intergenic | 25.0% |
!!! | AATTAATGCTGATTGTTTTC+AGG | - | chr3_1:14660253-14660272 | Msa0350110:intron | 25.0% |
! | TGGTAAATTGCTTATGTATA+TGG | + | chr3_1:14660573-14660592 | None:intergenic | 25.0% |
!!! | TGTCTTTTTGATTTGTGATT+TGG | - | chr3_1:14660722-14660741 | Msa0350110:intron | 25.0% |
! | ATATATTTGATGAGGATTGT+TGG | - | chr3_1:14661015-14661034 | Msa0350110:five_prime_UTR | 25.0% |
! | TATATTTGATGAGGATTGTT+GGG | - | chr3_1:14661016-14661035 | Msa0350110:five_prime_UTR | 25.0% |
! | TTCATTTTCATCATCACCTT+CGG | - | chr3_1:14656181-14656200 | Msa0350110:three_prime_UTR | 30.0% |
TAAATCGATAACAAGCTATC+AGG | + | chr3_1:14656577-14656596 | None:intergenic | 30.0% | |
TTGTTAAATAGGAATGGGAA+TGG | - | chr3_1:14656631-14656650 | Msa0350110:intron | 30.0% | |
TGTTAAATAGGAATGGGAAT+GGG | - | chr3_1:14656632-14656651 | Msa0350110:intron | 30.0% | |
!!! | ATGTTCGTTGTTGTTGTTTT+TGG | - | chr3_1:14657134-14657153 | Msa0350110:CDS | 30.0% |
GAGAAATTGTGATATGAGAA+TGG | - | chr3_1:14657239-14657258 | Msa0350110:CDS | 30.0% | |
!! | AATTTGTAGATTTCAGGTTC+TGG | - | chr3_1:14657321-14657340 | Msa0350110:CDS | 30.0% |
!!! | TTCTGGTTTCTGAAGTTTTA+TGG | - | chr3_1:14657338-14657357 | Msa0350110:CDS | 30.0% |
TCAACAAATTCATCATCTCA+AGG | + | chr3_1:14657559-14657578 | None:intergenic | 30.0% | |
AAGACAATGTGCATCATAAT+GGG | - | chr3_1:14658001-14658020 | Msa0350110:CDS | 30.0% | |
TGTAATGTGTATTCGCAATT+CGG | - | chr3_1:14658171-14658190 | Msa0350110:intron | 30.0% | |
TCAATACTTGAGGAACAAAA+TGG | + | chr3_1:14658197-14658216 | None:intergenic | 30.0% | |
! | CGATTTTCCGTTTATGTTTA+TGG | - | chr3_1:14658270-14658289 | Msa0350110:intron | 30.0% |
CTGTCTACCATAAACATAAA+CGG | + | chr3_1:14658280-14658299 | None:intergenic | 30.0% | |
! | AATTTTCTTTCACAAGGTTC+TGG | - | chr3_1:14658411-14658430 | Msa0350110:intron | 30.0% |
TTTAGGTAATTGAGTTTCTG+AGG | + | chr3_1:14658657-14658676 | None:intergenic | 30.0% | |
!!! | CATCAGCTATTTTAGTCTTT+AGG | + | chr3_1:14658674-14658693 | None:intergenic | 30.0% |
! | TAAAATAGCTGATGTTTTGC+TGG | - | chr3_1:14658680-14658699 | Msa0350110:intron | 30.0% |
!!! | CCATTCTTCACATTGTTTTT+TGG | + | chr3_1:14659105-14659124 | None:intergenic | 30.0% |
CCAAAAAACAATGTGAAGAA+TGG | - | chr3_1:14659102-14659121 | Msa0350110:intron | 30.0% | |
GTACATTACATGCATTAAAC+AGG | + | chr3_1:14659209-14659228 | None:intergenic | 30.0% | |
AACAACCACACAATCAATTT+CGG | - | chr3_1:14659246-14659265 | Msa0350110:intron | 30.0% | |
TTATTTACTATTAGCGCGAT+GGG | - | chr3_1:14659280-14659299 | Msa0350110:intron | 30.0% | |
TAAGCCTTTCTTATACAAGA+TGG | + | chr3_1:14659309-14659328 | None:intergenic | 30.0% | |
TCTTGTATAAGAAAGGCTTA+AGG | - | chr3_1:14659309-14659328 | Msa0350110:intron | 30.0% | |
AATGTGTTCCTCTTCAAAAT+TGG | - | chr3_1:14659364-14659383 | Msa0350110:intron | 30.0% | |
!! | CTAAAACACCAATTTTGAAG+AGG | + | chr3_1:14659375-14659394 | None:intergenic | 30.0% |
!! | TTTTAAGGGCATATCTTATG+GGG | - | chr3_1:14659436-14659455 | Msa0350110:intron | 30.0% |
GTTATTTGGATACACAAACT+GGG | + | chr3_1:14659807-14659826 | None:intergenic | 30.0% | |
! | TGTTATTTGGATACACAAAC+TGG | + | chr3_1:14659808-14659827 | None:intergenic | 30.0% |
! | ATACAAAGAAGTATGATCCT+TGG | - | chr3_1:14660180-14660199 | Msa0350110:intron | 30.0% |
! | TACAAAGAAGTATGATCCTT+GGG | - | chr3_1:14660181-14660200 | Msa0350110:intron | 30.0% |
AGACTTCTAATTCTTTCACA+TGG | + | chr3_1:14660216-14660235 | None:intergenic | 30.0% | |
AGAAACCTGTATGATTTAGT+GGG | + | chr3_1:14660694-14660713 | None:intergenic | 30.0% | |
TCATTCTCATCAAAAGCAAT+TGG | + | chr3_1:14660774-14660793 | None:intergenic | 30.0% | |
AGGATTGTTGGGTTAAATAT+TGG | - | chr3_1:14661027-14661046 | Msa0350110:five_prime_UTR | 30.0% | |
GGATTGTTGGGTTAAATATT+GGG | - | chr3_1:14661028-14661047 | Msa0350110:five_prime_UTR | 30.0% | |
! | AGAAGAGCATATCATTGAAG+AGG | + | chr3_1:14656153-14656172 | None:intergenic | 35.0% |
TCTTCAATGATATGCTCTTC+TGG | - | chr3_1:14656152-14656171 | Msa0350110:three_prime_UTR | 35.0% | |
GATCGGAAAAAAAAAACCGA+AGG | + | chr3_1:14656200-14656219 | None:intergenic | 35.0% | |
!! | ACATTACATTGGCTTTGTTG+TGG | + | chr3_1:14656331-14656350 | None:intergenic | 35.0% |
!! | AATTAAGCTGGATTTTGGGT+TGG | - | chr3_1:14656786-14656805 | Msa0350110:CDS | 35.0% |
TTGAAGAACCTAAATTCGGA+CGG | + | chr3_1:14656871-14656890 | None:intergenic | 35.0% | |
GTGAAATACTGAAATGTGAG+TGG | - | chr3_1:14657056-14657075 | Msa0350110:CDS | 35.0% | |
CAACGAACATAAGAACAAAG+AGG | + | chr3_1:14657124-14657143 | None:intergenic | 35.0% | |
CAAATTCATCATCTCAAGGA+GGG | + | chr3_1:14657555-14657574 | None:intergenic | 35.0% | |
ACAAATTCATCATCTCAAGG+AGG | + | chr3_1:14657556-14657575 | None:intergenic | 35.0% | |
!! | CTACTGGTTGCTGAAATTTT+TGG | - | chr3_1:14657678-14657697 | Msa0350110:intron | 35.0% |
! | GAATTTGCTCTTTGTAAAGC+AGG | - | chr3_1:14657813-14657832 | Msa0350110:intron | 35.0% |
GAAGACAATGTGCATCATAA+TGG | - | chr3_1:14658000-14658019 | Msa0350110:CDS | 35.0% | |
!! | TCATAATGGGAGGAATTTTG+AGG | - | chr3_1:14658014-14658033 | Msa0350110:CDS | 35.0% |
GTTTCTGTTTAAGTGAAGTG+AGG | - | chr3_1:14658241-14658260 | Msa0350110:intron | 35.0% | |
GGTAAGTGTTATACTAACGA+TGG | + | chr3_1:14658355-14658374 | None:intergenic | 35.0% | |
TTACAATGTAGCGAGTATCA+AGG | + | chr3_1:14658393-14658412 | None:intergenic | 35.0% | |
TTACAAAAAGTTTGTGAGCC+AGG | + | chr3_1:14658633-14658652 | None:intergenic | 35.0% | |
!!! | TGATTTGGTAAACGTTTTGC+AGG | - | chr3_1:14658893-14658912 | Msa0350110:intron | 35.0% |
GCAAAGTTTCTTAAAGCTTG+TGG | - | chr3_1:14658915-14658934 | Msa0350110:intron | 35.0% | |
ATGCTTTCCGAATTTCAGTA+GGG | + | chr3_1:14658956-14658975 | None:intergenic | 35.0% | |
! | TACTGAAATTCGGAAAGCAT+CGG | - | chr3_1:14658956-14658975 | Msa0350110:intron | 35.0% |
TTGAATGGTTGGACATTAGT+TGG | + | chr3_1:14659071-14659090 | None:intergenic | 35.0% | |
!!! | TCACATTGTTTTTTGGGAGT+TGG | + | chr3_1:14659098-14659117 | None:intergenic | 35.0% |
CTTATTTACTATTAGCGCGA+TGG | - | chr3_1:14659279-14659298 | Msa0350110:intron | 35.0% | |
GACACCATCTTGTATAAGAA+AGG | - | chr3_1:14659302-14659321 | Msa0350110:intron | 35.0% | |
! | GAAGAGGAACACATTTTCTT+AGG | + | chr3_1:14659359-14659378 | None:intergenic | 35.0% |
CAATGCACACAATACTCAAT+GGG | - | chr3_1:14659547-14659566 | Msa0350110:intron | 35.0% | |
ATGGGAATATCATGACTCTT+CGG | - | chr3_1:14659565-14659584 | Msa0350110:intron | 35.0% | |
CTTATTCATTTCAGTCCCAT+CGG | + | chr3_1:14659621-14659640 | None:intergenic | 35.0% | |
GATGGGACTGAAATGAATAA+GGG | - | chr3_1:14659620-14659639 | Msa0350110:intron | 35.0% | |
ATGGGACTGAAATGAATAAG+GGG | - | chr3_1:14659621-14659640 | Msa0350110:intron | 35.0% | |
TATTTCATCCTGTGAGTCAT+CGG | - | chr3_1:14659679-14659698 | Msa0350110:intron | 35.0% | |
TCCCTTCAGATATCTTCATT+GGG | + | chr3_1:14659751-14659770 | None:intergenic | 35.0% | |
ATCCCTTCAGATATCTTCAT+TGG | + | chr3_1:14659752-14659771 | None:intergenic | 35.0% | |
!! | ACGGTAGATTCACTTTTATC+TGG | + | chr3_1:14659947-14659966 | None:intergenic | 35.0% |
AGATAAAAGTGAATCTACCG+TGG | - | chr3_1:14659946-14659965 | Msa0350110:intron | 35.0% | |
GAGAAGAAAGAAAATGGAGA+TGG | - | chr3_1:14660018-14660037 | Msa0350110:intron | 35.0% | |
AGAAGTTTGTACTTCTGATG+CGG | - | chr3_1:14660426-14660445 | Msa0350110:intron | 35.0% | |
! | GTAAGTGGTCTTTTGTCAAA+TGG | + | chr3_1:14660593-14660612 | None:intergenic | 35.0% |
GCACTCAATACAAAAGTAAG+TGG | + | chr3_1:14660608-14660627 | None:intergenic | 35.0% | |
!! | AGTCTCGCGATTTTGATAAT+TGG | - | chr3_1:14660667-14660686 | Msa0350110:intron | 35.0% |
GAGAAACCTGTATGATTTAG+TGG | + | chr3_1:14660695-14660714 | None:intergenic | 35.0% | |
!! | TGATTTGTGATTTGGTTCAC+AGG | - | chr3_1:14660730-14660749 | Msa0350110:intron | 35.0% |
GTTCACAGGAAAGATATTTG+CGG | - | chr3_1:14660744-14660763 | Msa0350110:CDS | 35.0% | |
TACCTCATAGAGTAATGAGA+TGG | + | chr3_1:14660880-14660899 | None:intergenic | 35.0% | |
TTGGGTTAAATATTGGGCAT+TGG | - | chr3_1:14661034-14661053 | Msa0350110:five_prime_UTR | 35.0% | |
TGGGTTAAATATTGGGCATT+GGG | - | chr3_1:14661035-14661054 | Msa0350110:five_prime_UTR | 35.0% | |
GAACACGAAAGCAAGTGAAA+AGG | + | chr3_1:14656247-14656266 | None:intergenic | 40.0% | |
!! | TATGAAGCACTGACACTTCT+TGG | - | chr3_1:14656406-14656425 | Msa0350110:intron | 40.0% |
CACTGACACTTCTTGGATTA+GGG | - | chr3_1:14656413-14656432 | Msa0350110:intron | 40.0% | |
! | ACTGACACTTCTTGGATTAG+GGG | - | chr3_1:14656414-14656433 | Msa0350110:intron | 40.0% |
AATAGGAATGGGAATGGGAA+TGG | - | chr3_1:14656637-14656656 | Msa0350110:intron | 40.0% | |
TGAAGAACCTAAATTCGGAC+GGG | + | chr3_1:14656870-14656889 | None:intergenic | 40.0% | |
!! | AATTTGTTGATTGCGGGTTC+TGG | - | chr3_1:14656940-14656959 | Msa0350110:CDS | 40.0% |
! | TTGGTAGCTAAAACGTCGAA+TGG | - | chr3_1:14657488-14657507 | Msa0350110:CDS | 40.0% |
! | TTCTGAGAATGTTCTGCTAC+TGG | - | chr3_1:14657662-14657681 | Msa0350110:intron | 40.0% |
!! | CTTTGACTTTTCGATGTGAC+TGG | - | chr3_1:14657787-14657806 | Msa0350110:intron | 40.0% |
CTTTGTAAAGCAGGATGATG+TGG | - | chr3_1:14657822-14657841 | Msa0350110:intron | 40.0% | |
!! | TCTACTTTGTTTCTGACCGA+AGG | - | chr3_1:14657862-14657881 | Msa0350110:intron | 40.0% |
! | ACAATGTGCATCATAATGGG+AGG | - | chr3_1:14658004-14658023 | Msa0350110:CDS | 40.0% |
!! | TAATGGGAGGAATTTTGAGG+AGG | - | chr3_1:14658017-14658036 | Msa0350110:CDS | 40.0% |
!! | AATGGGAGGAATTTTGAGGA+GGG | - | chr3_1:14658018-14658037 | Msa0350110:CDS | 40.0% |
TGATAGGCAGCTTAAAGATG+AGG | - | chr3_1:14658053-14658072 | Msa0350110:CDS | 40.0% | |
TTCATGCATGTTTAGCTGTC+TGG | - | chr3_1:14658131-14658150 | Msa0350110:CDS | 40.0% | |
!! | AGCACATTGAAGAAGCACTA+TGG | + | chr3_1:14658303-14658322 | None:intergenic | 40.0% |
TCAAGGCTTACTTAGTATCG+TGG | + | chr3_1:14658376-14658395 | None:intergenic | 40.0% | |
! | TAGAATTTTCTGGGTGTCCA+TGG | - | chr3_1:14658528-14658547 | Msa0350110:intron | 40.0% |
ATACACGACAAATCATAGCC+AGG | + | chr3_1:14658560-14658579 | None:intergenic | 40.0% | |
! | AATAGCTGATGTTTTGCTGG+TGG | - | chr3_1:14658683-14658702 | Msa0350110:intron | 40.0% |
CAAGTACCCCTACTGAAATT+CGG | - | chr3_1:14658946-14658965 | Msa0350110:intron | 40.0% | |
TGCTTTCCGAATTTCAGTAG+GGG | + | chr3_1:14658955-14658974 | None:intergenic | 40.0% | |
GATGCTTTCCGAATTTCAGT+AGG | + | chr3_1:14658957-14658976 | None:intergenic | 40.0% | |
CCAGAATCGTTACTACATGA+AGG | + | chr3_1:14658999-14659018 | None:intergenic | 40.0% | |
CCTTCATGTAGTAACGATTC+TGG | - | chr3_1:14658996-14659015 | Msa0350110:intron | 40.0% | |
AGAAGCCAAGAACGAAACTT+TGG | + | chr3_1:14659026-14659045 | None:intergenic | 40.0% | |
!!! | CATTGTTTTTTGGGAGTTGG+CGG | + | chr3_1:14659095-14659114 | None:intergenic | 40.0% |
TTAATAACCTGCTAGGTGTG+TGG | + | chr3_1:14659151-14659170 | None:intergenic | 40.0% | |
AACCACACAATCAATTTCGG+TGG | - | chr3_1:14659249-14659268 | Msa0350110:intron | 40.0% | |
ATCCACCGAAATTGATTGTG+TGG | + | chr3_1:14659254-14659273 | None:intergenic | 40.0% | |
! | CCATTGAGTATTGTGTGCAT+TGG | + | chr3_1:14659549-14659568 | None:intergenic | 40.0% |
CCAATGCACACAATACTCAA+TGG | - | chr3_1:14659546-14659565 | Msa0350110:intron | 40.0% | |
GAATATCATGACTCTTCGGA+AGG | - | chr3_1:14659569-14659588 | Msa0350110:intron | 40.0% | |
CGATGGGACTGAAATGAATA+AGG | - | chr3_1:14659619-14659638 | Msa0350110:intron | 40.0% | |
ATCTTCATTGGGGTAGGATT+TGG | + | chr3_1:14659740-14659759 | None:intergenic | 40.0% | |
TCAGATATCTTCATTGGGGT+AGG | + | chr3_1:14659746-14659765 | None:intergenic | 40.0% | |
ACCCCAATGAAGATATCTGA+AGG | - | chr3_1:14659746-14659765 | Msa0350110:intron | 40.0% | |
CCCTTCAGATATCTTCATTG+GGG | + | chr3_1:14659750-14659769 | None:intergenic | 40.0% | |
CCCCAATGAAGATATCTGAA+GGG | - | chr3_1:14659747-14659766 | Msa0350110:intron | 40.0% | |
TTAACAGGGTAAACAGTTCC+AGG | + | chr3_1:14659782-14659801 | None:intergenic | 40.0% | |
ACACAAACTGGGACTTAACA+GGG | + | chr3_1:14659796-14659815 | None:intergenic | 40.0% | |
TACACAAACTGGGACTTAAC+AGG | + | chr3_1:14659797-14659816 | None:intergenic | 40.0% | |
GTGTATCCAAATAACAGCCT+AGG | - | chr3_1:14659812-14659831 | Msa0350110:intron | 40.0% | |
! | CTCTAAGAGCAAGATACTTG+AGG | - | chr3_1:14659844-14659863 | Msa0350110:intron | 40.0% |
!! | GAAGCCTGCATCTGTTATTT+TGG | - | chr3_1:14659991-14660010 | Msa0350110:intron | 40.0% |
TCCTCCAAAATAACAGATGC+AGG | + | chr3_1:14659998-14660017 | None:intergenic | 40.0% | |
GGAGGAGAGAAGAAAGAAAA+TGG | - | chr3_1:14660012-14660031 | Msa0350110:intron | 40.0% | |
AGGATACTATCATCGCTCAA+AGG | - | chr3_1:14660336-14660355 | Msa0350110:intron | 40.0% | |
TTGGTCCCACTAAATCATAC+AGG | - | chr3_1:14660686-14660705 | Msa0350110:intron | 40.0% | |
GTCCATCTCATTACTCTATG+AGG | - | chr3_1:14660875-14660894 | Msa0350110:five_prime_UTR | 40.0% | |
!! | AATATTGGGCATTGGGAGAT+CGG | - | chr3_1:14661042-14661061 | Msa0350110:five_prime_UTR | 40.0% |
CTGACCTACCTTCTTCACTT+GGG | - | chr3_1:14656126-14656145 | Msa0350110:three_prime_UTR | 45.0% | |
! | GCACTGACACTTCTTGGATT+AGG | - | chr3_1:14656412-14656431 | Msa0350110:intron | 45.0% |
CAAAGTCACAGACACTGACA+CGG | + | chr3_1:14656554-14656573 | None:intergenic | 45.0% | |
!!! | TAAGCTGGATTTTGGGTTGG+TGG | - | chr3_1:14656789-14656808 | Msa0350110:intron | 45.0% |
!!! | GGATTTTGGGTTGGTGGTAT+TGG | - | chr3_1:14656795-14656814 | Msa0350110:intron | 45.0% |
GAATGGATCCTAAGACCTTG+AGG | + | chr3_1:14656845-14656864 | None:intergenic | 45.0% | |
GAAGAACCTAAATTCGGACG+GGG | + | chr3_1:14656869-14656888 | None:intergenic | 45.0% | |
AGGGATCACAGAGTGATGAT+AGG | - | chr3_1:14658037-14658056 | Msa0350110:CDS | 45.0% | |
ATGCATGTTTAGCTGTCTGG+AGG | - | chr3_1:14658134-14658153 | Msa0350110:CDS | 45.0% | |
! | TTTCACAAGGTTCTGGCAGT+AGG | - | chr3_1:14658418-14658437 | Msa0350110:intron | 45.0% |
! | TTCACAAGGTTCTGGCAGTA+GGG | - | chr3_1:14658419-14658438 | Msa0350110:intron | 45.0% |
!! | TTCAGTAGGGGTACTTGCTA+TGG | + | chr3_1:14658943-14658962 | None:intergenic | 45.0% |
GTCCTCCAAAGTTTCGTTCT+TGG | - | chr3_1:14659018-14659037 | Msa0350110:CDS | 45.0% | |
AGCCAAGAACGAAACTTTGG+AGG | + | chr3_1:14659023-14659042 | None:intergenic | 45.0% | |
ATGACTCTTCGGAAGGAAGT+GGG | - | chr3_1:14659576-14659595 | Msa0350110:intron | 45.0% | |
TTCATTTCAGTCCCATCGGT+CGG | + | chr3_1:14659617-14659636 | None:intergenic | 45.0% | |
GGACTGAAATGAATAAGGGG+AGG | - | chr3_1:14659624-14659643 | Msa0350110:intron | 45.0% | |
TCCAAATAACAGCCTAGGTG+AGG | - | chr3_1:14659817-14659836 | Msa0350110:intron | 45.0% | |
TCCTCACCTAGGCTGTTATT+TGG | + | chr3_1:14659821-14659840 | None:intergenic | 45.0% | |
TCTTAGAGACATCCTCACCT+AGG | + | chr3_1:14659832-14659851 | None:intergenic | 45.0% | |
GAGCAAGATACTTGAGGAAG+AGG | - | chr3_1:14659850-14659869 | Msa0350110:intron | 45.0% | |
ATGTTCCTGCGCAAGATTCA+AGG | - | chr3_1:14659876-14659895 | Msa0350110:intron | 45.0% | |
ATCTTCCTTGAATCTTGCGC+AGG | + | chr3_1:14659884-14659903 | None:intergenic | 45.0% | |
AGTGAATCTACCGTGGAAGA+AGG | - | chr3_1:14659953-14659972 | Msa0350110:intron | 45.0% | |
AGAAGACAAGCCTTCTTCCA+CGG | + | chr3_1:14659966-14659985 | None:intergenic | 45.0% | |
TGGAAGAAGGCTTGTCTTCT+TGG | - | chr3_1:14659966-14659985 | Msa0350110:intron | 45.0% | |
!!! | GCCTGCATCTGTTATTTTGG+AGG | - | chr3_1:14659994-14660013 | Msa0350110:intron | 45.0% |
TGCTGCACATTGGATTGAAG+AGG | - | chr3_1:14660093-14660112 | Msa0350110:intron | 45.0% | |
CACATGGAAAATAGCTCCCA+AGG | + | chr3_1:14660200-14660219 | None:intergenic | 45.0% | |
TTCTCCAACCTCTCTTCGAA+CGG | + | chr3_1:14660305-14660324 | None:intergenic | 45.0% | |
!! | GTTGGAGAAGGCATTATCTG+AGG | - | chr3_1:14660316-14660335 | Msa0350110:intron | 45.0% |
GCAAACAGCAGTGCTTTCAT+AGG | + | chr3_1:14660366-14660385 | None:intergenic | 45.0% | |
TAGATATCAACACGACGCCA+CGG | + | chr3_1:14660847-14660866 | None:intergenic | 45.0% | |
! | GGCGTCGTGTTGATATCTAT+AGG | - | chr3_1:14660848-14660867 | Msa0350110:five_prime_UTR | 45.0% |
AGCACTGCATTGGGACTTAA+TGG | + | chr3_1:14660923-14660942 | None:intergenic | 45.0% | |
CAAGCAATCAGCACTGCATT+GGG | + | chr3_1:14660932-14660951 | None:intergenic | 45.0% | |
!!! | AAAAATATTAATAGTTTTAA+CGG | - | chr3_1:14657621-14657640 | Msa0350110:intron | 5.0% |
CCAAGTGAAGAAGGTAGGTC+AGG | + | chr3_1:14656128-14656147 | None:intergenic | 50.0% | |
CCTGACCTACCTTCTTCACT+TGG | - | chr3_1:14656125-14656144 | Msa0350110:three_prime_UTR | 50.0% | |
AGGACCCAAGTGAAGAAGGT+AGG | + | chr3_1:14656133-14656152 | None:intergenic | 50.0% | |
GAAGAGGACCCAAGTGAAGA+AGG | + | chr3_1:14656137-14656156 | None:intergenic | 50.0% | |
!! | TTGGGTTGGTGGTATTGGCT+TGG | - | chr3_1:14656800-14656819 | Msa0350110:intron | 50.0% |
!! | TGGGTTGGTGGTATTGGCTT+GGG | - | chr3_1:14656801-14656820 | Msa0350110:intron | 50.0% |
TGGATCCTAAGACCTTGAGG+AGG | + | chr3_1:14656842-14656861 | None:intergenic | 50.0% | |
CTAAATTCGGACGGGGAGAA+TGG | + | chr3_1:14656862-14656881 | None:intergenic | 50.0% | |
CATTCTCCCCGTCCGAATTT+AGG | - | chr3_1:14656860-14656879 | Msa0350110:intron | 50.0% | |
TCATAGCCAGGAATGCACCA+TGG | + | chr3_1:14658548-14658567 | None:intergenic | 50.0% | |
CTGTGAGCATATGCATGTCC+TGG | - | chr3_1:14658612-14658631 | Msa0350110:intron | 50.0% | |
! | GCTGATGTTTTGCTGGTGGA+AGG | - | chr3_1:14658687-14658706 | Msa0350110:intron | 50.0% |
!! | GAGTTGGCGGATTGAATGGT+TGG | + | chr3_1:14659082-14659101 | None:intergenic | 50.0% |
!! | TTGGGAGTTGGCGGATTGAA+TGG | + | chr3_1:14659086-14659105 | None:intergenic | 50.0% |
CATGACTCTTCGGAAGGAAG+TGG | - | chr3_1:14659575-14659594 | Msa0350110:intron | 50.0% | |
!! | TCCTGTGAGTCATCGGCTTA+TGG | - | chr3_1:14659686-14659705 | Msa0350110:intron | 50.0% |
ACCATAAGCCGATGACTCAC+AGG | + | chr3_1:14659690-14659709 | None:intergenic | 50.0% | |
!! | TGTGAGTCATCGGCTTATGG+TGG | - | chr3_1:14659689-14659708 | Msa0350110:intron | 50.0% |
!! | AGTCATCGGCTTATGGTGGA+TGG | - | chr3_1:14659693-14659712 | Msa0350110:intron | 50.0% |
TCTGAAGGGATGCAAACTCC+TGG | - | chr3_1:14659761-14659780 | Msa0350110:intron | 50.0% | |
! | CCTATCGACAGGAGTTTTGC+GGG | + | chr3_1:14660056-14660075 | None:intergenic | 50.0% |
! | GCCTATCGACAGGAGTTTTG+CGG | + | chr3_1:14660057-14660076 | None:intergenic | 50.0% |
CTGTCGATAGGCCCATCATT+GGG | - | chr3_1:14660065-14660084 | Msa0350110:intron | 50.0% | |
GCAGCAACCATCCCAATGAT+GGG | + | chr3_1:14660079-14660098 | None:intergenic | 50.0% | |
TGCAGCAACCATCCCAATGA+TGG | + | chr3_1:14660080-14660099 | None:intergenic | 50.0% | |
TTGGGATGGTTGCTGCACAT+TGG | - | chr3_1:14660083-14660102 | Msa0350110:intron | 50.0% | |
TTCAGGACCAGAAAGTGAGC+TGG | - | chr3_1:14660270-14660289 | Msa0350110:intron | 50.0% | |
TAGCATGCCAGCTCACTTTC+TGG | + | chr3_1:14660280-14660299 | None:intergenic | 50.0% | |
GTTCGAAGAGAGGTTGGAGA+AGG | - | chr3_1:14660304-14660323 | Msa0350110:intron | 50.0% | |
CCAAGCAATCAGCACTGCAT+TGG | + | chr3_1:14660933-14660952 | None:intergenic | 50.0% | |
!! | CCAATGCAGTGCTGATTGCT+TGG | - | chr3_1:14660930-14660949 | Msa0350110:five_prime_UTR | 50.0% |
! | GCTTTGTTGTGGTGCCGAGA+CGG | + | chr3_1:14656320-14656339 | None:intergenic | 55.0% |
ACACGGCACAGACACTGACA+CGG | + | chr3_1:14656537-14656556 | None:intergenic | 55.0% | |
!! | GTGGTATTGGCTTGGGACCT+GGG | - | chr3_1:14656808-14656827 | Msa0350110:intron | 55.0% |
GTGCTCCTCCTCAAGGTCTT+AGG | - | chr3_1:14656834-14656853 | Msa0350110:intron | 55.0% | |
GTTCAGACCACACACCTAGC+AGG | - | chr3_1:14659141-14659160 | Msa0350110:intron | 55.0% | |
TCTTCGGAAGGAAGTGGGCA+GGG | - | chr3_1:14659581-14659600 | Msa0350110:intron | 55.0% | |
GGAGCTATCATCCGACCGAT+GGG | - | chr3_1:14659603-14659622 | Msa0350110:intron | 55.0% | |
CCCGCAAAACTCCTGTCGAT+AGG | - | chr3_1:14660053-14660072 | Msa0350110:intron | 55.0% | |
!! | CCAATGATGGGCCTATCGAC+AGG | + | chr3_1:14660067-14660086 | None:intergenic | 55.0% |
CCTGTCGATAGGCCCATCAT+TGG | - | chr3_1:14660064-14660083 | Msa0350110:intron | 55.0% | |
CGATAGGCCCATCATTGGGA+TGG | - | chr3_1:14660069-14660088 | Msa0350110:intron | 55.0% | |
CTGATGCTCCTCCTCCTAAG+TGG | - | chr3_1:14660122-14660141 | Msa0350110:intron | 55.0% | |
ATGCTCCTCCTCCTAAGTGG+TGG | - | chr3_1:14660125-14660144 | Msa0350110:intron | 55.0% | |
TGCTCCTCCTCCTAAGTGGT+GGG | - | chr3_1:14660126-14660145 | Msa0350110:intron | 55.0% | |
TTGCCATCCCACCACTTAGG+AGG | + | chr3_1:14660136-14660155 | None:intergenic | 55.0% | |
CCATTGCCATCCCACCACTT+AGG | + | chr3_1:14660139-14660158 | None:intergenic | 55.0% | |
! | CCTAAGTGGTGGGATGGCAA+TGG | - | chr3_1:14660136-14660155 | Msa0350110:intron | 55.0% |
ATGCTACGCCGTTCGAAGAG+AGG | - | chr3_1:14660294-14660313 | Msa0350110:intron | 55.0% | |
TACGCCGTTCGAAGAGAGGT+TGG | - | chr3_1:14660298-14660317 | Msa0350110:intron | 55.0% | |
TTCATCCCATCCACAGTCCG+TGG | - | chr3_1:14660827-14660846 | Msa0350110:exon | 55.0% | |
! | GTTGTGGTGCCGAGACGGTA+CGG | + | chr3_1:14656315-14656334 | None:intergenic | 60.0% |
!! | GGTGGTATTGGCTTGGGACC+TGG | - | chr3_1:14656807-14656826 | Msa0350110:intron | 60.0% |
! | TTGAGGAGGAGCACACTCCC+AGG | + | chr3_1:14656828-14656847 | None:intergenic | 60.0% |
! | TGGGAGTGTGCTCCTCCTCA+AGG | - | chr3_1:14656827-14656846 | Msa0350110:intron | 60.0% |
GGGTGTCCATGGTGCATTCC+TGG | - | chr3_1:14658539-14658558 | Msa0350110:intron | 60.0% | |
CTCTTCGGAAGGAAGTGGGC+AGG | - | chr3_1:14659580-14659599 | Msa0350110:intron | 60.0% | |
CTTCGGAAGGAAGTGGGCAG+GGG | - | chr3_1:14659582-14659601 | Msa0350110:intron | 60.0% | |
GGGAGCTATCATCCGACCGA+TGG | - | chr3_1:14659602-14659621 | Msa0350110:intron | 60.0% | |
CCATCCCACCACTTAGGAGG+AGG | + | chr3_1:14660133-14660152 | None:intergenic | 60.0% | |
! | CCTCCTCCTAAGTGGTGGGA+TGG | - | chr3_1:14660130-14660149 | Msa0350110:intron | 60.0% |
! | CGACGCCACGGACTGTGGAT+GGG | + | chr3_1:14660835-14660854 | None:intergenic | 65.0% |
! | ACGACGCCACGGACTGTGGA+TGG | + | chr3_1:14660836-14660855 | None:intergenic | 65.0% |
! | CAACACGACGCCACGGACTG+TGG | + | chr3_1:14660840-14660859 | None:intergenic | 65.0% |
! | CGGCGGCGGATTTAGCGTGG+TGG | + | chr3_1:14656283-14656302 | None:intergenic | 70.0% |
! | TGGCGGCGGCGGATTTAGCG+TGG | + | chr3_1:14656286-14656305 | None:intergenic | 70.0% |
! | GTGGTGCCGAGACGGTACGG+CGG | + | chr3_1:14656312-14656331 | None:intergenic | 70.0% |
AGACGGTACGGCGGCGGTGG+CGG | + | chr3_1:14656303-14656322 | None:intergenic | 75.0% | |
CCACCGCCGCCGTACCGTCT+CGG | - | chr3_1:14656303-14656322 | Msa0350110:CDS | 75.0% | |
GTGCCGAGACGGTACGGCGG+CGG | + | chr3_1:14656309-14656328 | None:intergenic | 75.0% | |
! | CCGAGACGGTACGGCGGCGG+TGG | + | chr3_1:14656306-14656325 | None:intergenic | 80.0% |
!! | TACGGCGGCGGTGGCGGCGG+CGG | + | chr3_1:14656297-14656316 | None:intergenic | 85.0% |
!! | CGGTACGGCGGCGGTGGCGG+CGG | + | chr3_1:14656300-14656319 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 14656016 | 14661065 | 14656016 | ID=Msa0350110;Name=Msa0350110 |
chr3_1 | mRNA | 14656016 | 14661065 | 14656016 | ID=Msa0350110-mRNA-1;Parent=Msa0350110;Name=Msa0350110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=220|1|1|1|1|1|7|205|442 |
chr3_1 | exon | 14656016 | 14656329 | 14656016 | ID=Msa0350110-mRNA-1:exon:3635;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14656724 | 14656806 | 14656724 | ID=Msa0350110-mRNA-1:exon:3634;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14656892 | 14657543 | 14656892 | ID=Msa0350110-mRNA-1:exon:3633;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14657919 | 14658166 | 14657919 | ID=Msa0350110-mRNA-1:exon:3632;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14659007 | 14659086 | 14659007 | ID=Msa0350110-mRNA-1:exon:3631;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14659198 | 14659246 | 14659198 | ID=Msa0350110-mRNA-1:exon:3630;Parent=Msa0350110-mRNA-1 |
chr3_1 | exon | 14660738 | 14661065 | 14660738 | ID=Msa0350110-mRNA-1:exon:3629;Parent=Msa0350110-mRNA-1 |
chr3_1 | five_prime_UTR | 14660846 | 14661065 | 14660846 | ID=Msa0350110-mRNA-1:five_prime_utr;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14660738 | 14660845 | 14660738 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14659198 | 14659246 | 14659198 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14659007 | 14659086 | 14659007 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14657919 | 14658166 | 14657919 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14656892 | 14657543 | 14656892 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14656724 | 14656806 | 14656724 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | CDS | 14656221 | 14656329 | 14656221 | ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1 |
chr3_1 | three_prime_UTR | 14656016 | 14656220 | 14656016 | ID=Msa0350110-mRNA-1:three_prime_utr;Parent=Msa0350110-mRNA-1 |
Gene Sequence |
Protein sequence |