AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0350110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350110 MtrunA17_Chr3g0095751 93.679 443 23 5 1 442 25 463 0.0 837
Msa0350110 MtrunA17_Chr5g0442731 45.259 464 198 10 1 422 24 473 1.39e-114 344
Msa0350110 MtrunA17_Chr1g0183391 39.683 126 62 4 284 401 317 436 3.68e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0350110 AT1G06660.1 38.272 486 221 17 1 441 29 480 1.85e-71 233
Msa0350110 AT2G30820.2 34.328 469 220 13 1 433 1 417 2.22e-60 202
Msa0350110 AT2G30820.1 34.328 469 220 13 1 433 1 417 2.22e-60 202

Find 151 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCACCTAGGCTGTTATT+TGG 0.189762 3_1:+14657241 None:intergenic
GTCCTCCAAAGTTTCGTTCT+TGG 0.196344 3_1:-14658041 Msa0350110:CDS
AGGATTGTTGGGTTAAATAT+TGG 0.204732 3_1:-14656032 Msa0350110:three_prime_UTR
GAAGCCTGCATCTGTTATTT+TGG 0.212458 3_1:-14657068 Msa0350110:CDS
TAGCATGCCAGCTCACTTTC+TGG 0.229927 3_1:+14656782 None:intergenic
TTGTATTTGTTGGTTGAATT+TGG 0.246872 3_1:+14656896 None:intergenic
TGGAAGAAGGCTTGTCTTCT+TGG 0.254792 3_1:-14657093 Msa0350110:CDS
CGATGGGACTGAAATGAATA+AGG 0.261654 3_1:-14657440 Msa0350110:CDS
GGAGGAGAGAAGAAAGAAAA+TGG 0.286742 3_1:-14657047 Msa0350110:CDS
ATCTTCATTGGGGTAGGATT+TGG 0.293500 3_1:+14657322 None:intergenic
CGGTACGGCGGCGGTGGCGG+CGG 0.303940 3_1:+14660762 None:intergenic
TCTTCAATGATATGCTCTTC+TGG 0.313976 3_1:-14660907 Msa0350110:five_prime_UTR
TCCTGTGAGTCATCGGCTTA+TGG 0.325210 3_1:-14657373 Msa0350110:CDS
TCATACTTCTTTGTATTTGT+TGG 0.327303 3_1:+14656886 None:intergenic
GGATTGTTGGGTTAAATATT+GGG 0.336604 3_1:-14656031 Msa0350110:three_prime_UTR
TACACAAACTGGGACTTAAC+AGG 0.339806 3_1:+14657265 None:intergenic
AGCACTGCATTGGGACTTAA+TGG 0.349682 3_1:+14656139 None:intergenic
ATCCCTTCAGATATCTTCAT+TGG 0.349727 3_1:+14657310 None:intergenic
CCTGACCTACCTTCTTCACT+TGG 0.366149 3_1:-14660934 Msa0350110:five_prime_UTR
GAAGACAATGTGCATCATAA+TGG 0.368361 3_1:-14659059 Msa0350110:CDS
CCTTCATGTAGTAACGATTC+TGG 0.376618 3_1:-14658063 Msa0350110:CDS
TTGAATGGTTGGACATTAGT+TGG 0.377570 3_1:+14657991 None:intergenic
TGTTATTTGGATACACAAAC+TGG 0.390899 3_1:+14657254 None:intergenic
AGACGGTACGGCGGCGGTGG+CGG 0.391537 3_1:+14660759 None:intergenic
TACGGCGGCGGTGGCGGCGG+CGG 0.400440 3_1:+14660765 None:intergenic
TCCCTTCAGATATCTTCATT+GGG 0.406133 3_1:+14657311 None:intergenic
TGGGTTAAATATTGGGCATT+GGG 0.410553 3_1:-14656024 Msa0350110:three_prime_UTR
TCATTCTCATCAAAAGCAAT+TGG 0.422122 3_1:+14656288 None:intergenic
TTGGGAGTTGGCGGATTGAA+TGG 0.422674 3_1:+14657976 None:intergenic
CAAGTACCCCTACTGAAATT+CGG 0.424717 3_1:-14658113 Msa0350110:CDS
CCGAGACGGTACGGCGGCGG+TGG 0.430734 3_1:+14660756 None:intergenic
TGCAGCAACCATCCCAATGA+TGG 0.431713 3_1:+14656982 None:intergenic
TATATTTGATGAGGATTGTT+GGG 0.432129 3_1:-14656043 Msa0350110:three_prime_UTR
TTGGGTTAAATATTGGGCAT+TGG 0.435150 3_1:-14656025 Msa0350110:three_prime_UTR
ATGTTCCTGCGCAAGATTCA+AGG 0.435844 3_1:-14657183 Msa0350110:CDS
AGGGATCACAGAGTGATGAT+AGG 0.453830 3_1:-14659022 Msa0350110:CDS
CCTGTCGATAGGCCCATCAT+TGG 0.456758 3_1:-14656995 Msa0350110:CDS
CCAAGCAATCAGCACTGCAT+TGG 0.458893 3_1:+14656129 None:intergenic
AAGACAATGTGCATCATAAT+GGG 0.462453 3_1:-14659058 Msa0350110:CDS
CAAGCAATCAGCACTGCATT+GGG 0.465777 3_1:+14656130 None:intergenic
TTAACAGGGTAAACAGTTCC+AGG 0.469267 3_1:+14657280 None:intergenic
GAGCAAGATACTTGAGGAAG+AGG 0.471401 3_1:-14657209 Msa0350110:CDS
CCACCGCCGCCGTACCGTCT+CGG 0.482855 3_1:-14660756 Msa0350110:CDS
AGAAGCCAAGAACGAAACTT+TGG 0.484007 3_1:+14658036 None:intergenic
AATATTGGGCATTGGGAGAT+CGG 0.485654 3_1:-14656017 Msa0350110:three_prime_UTR
TCCTCCAAAATAACAGATGC+AGG 0.487575 3_1:+14657064 None:intergenic
GATGGGACTGAAATGAATAA+GGG 0.488622 3_1:-14657439 Msa0350110:CDS
TCAAATATATACAATACAAG+TGG 0.489054 3_1:+14656057 None:intergenic
ACGACGCCACGGACTGTGGA+TGG 0.492778 3_1:+14656226 None:intergenic
ATGGGAATATCATGACTCTT+CGG 0.494202 3_1:-14657494 Msa0350110:CDS
CCAATGCACACAATACTCAA+TGG 0.495131 3_1:-14657513 Msa0350110:CDS
CCAAGTGAAGAAGGTAGGTC+AGG 0.497945 3_1:+14660934 None:intergenic
GTCCATCTCATTACTCTATG+AGG 0.502624 3_1:-14656184 Msa0350110:three_prime_UTR
GCAAAGTTTCTTAAAGCTTG+TGG 0.503956 3_1:-14658144 Msa0350110:CDS
ATCTTCCTTGAATCTTGCGC+AGG 0.504663 3_1:+14657178 None:intergenic
CAATGCACACAATACTCAAT+GGG 0.505196 3_1:-14657512 Msa0350110:CDS
TTCAGTAGGGGTACTTGCTA+TGG 0.505440 3_1:+14658119 None:intergenic
CTCTTCGGAAGGAAGTGGGC+AGG 0.505993 3_1:-14657479 Msa0350110:CDS
GAAGAGGACCCAAGTGAAGA+AGG 0.507890 3_1:+14660925 None:intergenic
CCAATGATGGGCCTATCGAC+AGG 0.508176 3_1:+14656995 None:intergenic
ATATATTTGATGAGGATTGT+TGG 0.511343 3_1:-14656044 Msa0350110:three_prime_UTR
CCAATGCAGTGCTGATTGCT+TGG 0.511818 3_1:-14656129 Msa0350110:three_prime_UTR
CCATTGAGTATTGTGTGCAT+TGG 0.512181 3_1:+14657513 None:intergenic
CTTCGGAAGGAAGTGGGCAG+GGG 0.512249 3_1:-14657477 Msa0350110:CDS
TGCTCCTCCTCCTAAGTGGT+GGG 0.512880 3_1:-14656933 Msa0350110:CDS
CATGACTCTTCGGAAGGAAG+TGG 0.514139 3_1:-14657484 Msa0350110:CDS
GATGCTTTCCGAATTTCAGT+AGG 0.514555 3_1:+14658105 None:intergenic
CTGTCGATAGGCCCATCATT+GGG 0.516223 3_1:-14656994 Msa0350110:CDS
CAACACGACGCCACGGACTG+TGG 0.521235 3_1:+14656222 None:intergenic
TCTTCGGAAGGAAGTGGGCA+GGG 0.526061 3_1:-14657478 Msa0350110:CDS
TATTTCATCCTGTGAGTCAT+CGG 0.528657 3_1:-14657380 Msa0350110:CDS
ATGCTCCTCCTCCTAAGTGG+TGG 0.530708 3_1:-14656934 Msa0350110:CDS
GAGAAGAAAGAAAATGGAGA+TGG 0.532138 3_1:-14657041 Msa0350110:CDS
GTGCCGAGACGGTACGGCGG+CGG 0.532941 3_1:+14660753 None:intergenic
TTAAAGATTAATAACCTGCT+AGG 0.536769 3_1:+14657904 None:intergenic
AGTGAATCTACCGTGGAAGA+AGG 0.537717 3_1:-14657106 Msa0350110:CDS
TCTACTTTGTTTCTGACCGA+AGG 0.540444 3_1:-14659197 Msa0350110:intron
GTTCACAGGAAAGATATTTG+CGG 0.540461 3_1:-14656315 Msa0350110:intron
CTTATTCATTTCAGTCCCAT+CGG 0.540593 3_1:+14657441 None:intergenic
CTGACCTACCTTCTTCACTT+GGG 0.541465 3_1:-14660933 Msa0350110:five_prime_UTR
GAGTTGGCGGATTGAATGGT+TGG 0.541865 3_1:+14657980 None:intergenic
GTTCAGACCACACACCTAGC+AGG 0.546465 3_1:-14657918 Msa0350110:intron
AGAAAGAGAGAGAGTGTGTG+AGG 0.547849 3_1:+14661044 None:intergenic
TCAGATATCTTCATTGGGGT+AGG 0.551648 3_1:+14657316 None:intergenic
AGTATCACATTCAAAACATA+CGG 0.552280 3_1:+14657405 None:intergenic
TTCATTTCAGTCCCATCGGT+CGG 0.552448 3_1:+14657445 None:intergenic
ATGCTTTCCGAATTTCAGTA+GGG 0.554306 3_1:+14658106 None:intergenic
GTTGTGGTGCCGAGACGGTA+CGG 0.555465 3_1:+14660747 None:intergenic
GGGAGCTATCATCCGACCGA+TGG 0.556557 3_1:-14657457 Msa0350110:CDS
ACATTACATTGGCTTTGTTG+TGG 0.556918 3_1:+14660731 None:intergenic
GAACACGAAAGCAAGTGAAA+AGG 0.559259 3_1:+14660815 None:intergenic
TTCAGGACCAGAAAGTGAGC+TGG 0.559748 3_1:-14656789 Msa0350110:intron
ACCATAAGCCGATGACTCAC+AGG 0.559884 3_1:+14657372 None:intergenic
CCATTGCCATCCCACCACTT+AGG 0.560739 3_1:+14656923 None:intergenic
CCTCCTCCTAAGTGGTGGGA+TGG 0.560739 3_1:-14656929 Msa0350110:CDS
TCTGAAGGGATGCAAACTCC+TGG 0.562862 3_1:-14657298 Msa0350110:CDS
TGTATTGTATATATTTGATG+AGG 0.567911 3_1:-14656052 Msa0350110:three_prime_UTR
CGACGCCACGGACTGTGGAT+GGG 0.567931 3_1:+14656227 None:intergenic
CCTAAGTGGTGGGATGGCAA+TGG 0.569676 3_1:-14656923 Msa0350110:CDS
GTGTATCCAAATAACAGCCT+AGG 0.571499 3_1:-14657247 Msa0350110:CDS
ATGCTACGCCGTTCGAAGAG+AGG 0.575521 3_1:-14656765 Msa0350110:CDS
CAAATATATACAATACAAGT+GGG 0.576971 3_1:+14656058 None:intergenic
ACCCCAATGAAGATATCTGA+AGG 0.577653 3_1:-14657313 Msa0350110:CDS
CCATCCCACCACTTAGGAGG+AGG 0.578549 3_1:+14656929 None:intergenic
TGGCGGCGGCGGATTTAGCG+TGG 0.579596 3_1:+14660776 None:intergenic
TTGGGATGGTTGCTGCACAT+TGG 0.584288 3_1:-14656976 Msa0350110:CDS
GGAGCTATCATCCGACCGAT+GGG 0.587580 3_1:-14657456 Msa0350110:CDS
GGCGTCGTGTTGATATCTAT+AGG 0.588523 3_1:-14656211 Msa0350110:exon
GTTCGAAGAGAGGTTGGAGA+AGG 0.592220 3_1:-14656755 Msa0350110:CDS
CGATAGGCCCATCATTGGGA+TGG 0.592976 3_1:-14656990 Msa0350110:CDS
AGCCAAGAACGAAACTTTGG+AGG 0.594708 3_1:+14658039 None:intergenic
TAGATATCAACACGACGCCA+CGG 0.596729 3_1:+14656215 None:intergenic
AGAAGAGCATATCATTGAAG+AGG 0.597460 3_1:+14660909 None:intergenic
TACTGAAATTCGGAAAGCAT+CGG 0.598546 3_1:-14658103 Msa0350110:CDS
TTCTCCAACCTCTCTTCGAA+CGG 0.599277 3_1:+14656757 None:intergenic
TACCTCATAGAGTAATGAGA+TGG 0.599918 3_1:+14656182 None:intergenic
AGTCATCGGCTTATGGTGGA+TGG 0.599998 3_1:-14657366 Msa0350110:CDS
GCAGCAACCATCCCAATGAT+GGG 0.601660 3_1:+14656983 None:intergenic
CTGATGCTCCTCCTCCTAAG+TGG 0.601801 3_1:-14656937 Msa0350110:CDS
TCCAAATAACAGCCTAGGTG+AGG 0.601979 3_1:-14657242 Msa0350110:CDS
CTCTAAGAGCAAGATACTTG+AGG 0.603618 3_1:-14657215 Msa0350110:CDS
TTGCCATCCCACCACTTAGG+AGG 0.606952 3_1:+14656926 None:intergenic
TACGCCGTTCGAAGAGAGGT+TGG 0.606989 3_1:-14656761 Msa0350110:CDS
AGGACCCAAGTGAAGAAGGT+AGG 0.610700 3_1:+14660929 None:intergenic
TGATAGGCAGCTTAAAGATG+AGG 0.611968 3_1:-14659006 Msa0350110:intron
CCCTTCAGATATCTTCATTG+GGG 0.615934 3_1:+14657312 None:intergenic
CCAGAATCGTTACTACATGA+AGG 0.617304 3_1:+14658063 None:intergenic
ATGACTCTTCGGAAGGAAGT+GGG 0.617710 3_1:-14657483 Msa0350110:CDS
TGCTTTCCGAATTTCAGTAG+GGG 0.618402 3_1:+14658107 None:intergenic
AGGATACTATCATCGCTCAA+AGG 0.620789 3_1:-14656723 Msa0350110:intron
CCCGCAAAACTCCTGTCGAT+AGG 0.624406 3_1:-14657006 Msa0350110:CDS
AGAAGACAAGCCTTCTTCCA+CGG 0.626278 3_1:+14657096 None:intergenic
GCTTTGTTGTGGTGCCGAGA+CGG 0.627219 3_1:+14660742 None:intergenic
TTCATCCCATCCACAGTCCG+TGG 0.627583 3_1:-14656232 Msa0350110:CDS
CGGCGGCGGATTTAGCGTGG+TGG 0.627645 3_1:+14660779 None:intergenic
CCCCAATGAAGATATCTGAA+GGG 0.632021 3_1:-14657312 Msa0350110:CDS
GAATATCATGACTCTTCGGA+AGG 0.632054 3_1:-14657490 Msa0350110:CDS
CTTTGTAAAGCAGGATGATG+TGG 0.633113 3_1:-14659237 Msa0350110:intron
TGCTGCACATTGGATTGAAG+AGG 0.634738 3_1:-14656966 Msa0350110:CDS
ACACAAACTGGGACTTAACA+GGG 0.635382 3_1:+14657266 None:intergenic
TGTGAGTCATCGGCTTATGG+TGG 0.636034 3_1:-14657370 Msa0350110:CDS
TTAATAACCTGCTAGGTGTG+TGG 0.641765 3_1:+14657911 None:intergenic
GTTGGAGAAGGCATTATCTG+AGG 0.647231 3_1:-14656743 Msa0350110:CDS
ATGGGACTGAAATGAATAAG+GGG 0.654668 3_1:-14657438 Msa0350110:CDS
ATTTGAATATGGAAATGATG+AGG 0.659753 3_1:+14661017 None:intergenic
GTTATTTGGATACACAAACT+GGG 0.662575 3_1:+14657255 None:intergenic
ACAATGTGCATCATAATGGG+AGG 0.665914 3_1:-14659055 Msa0350110:CDS
AGATAAAAGTGAATCTACCG+TGG 0.669633 3_1:-14657113 Msa0350110:CDS
TCTTAGAGACATCCTCACCT+AGG 0.675023 3_1:+14657230 None:intergenic
GGACTGAAATGAATAAGGGG+AGG 0.697836 3_1:-14657435 Msa0350110:CDS
GTGGTGCCGAGACGGTACGG+CGG 0.758212 3_1:+14660750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTAATAGTTTTAAC+GGG - chr3_1:14657622-14657641 Msa0350110:intron 10.0%
!!! TTGTTTTTTGAATTTGAATA+TGG + chr3_1:14656056-14656075 None:intergenic 15.0%
!! TACAAAAAATAAACAAGAAA+CGG + chr3_1:14656373-14656392 None:intergenic 15.0%
!! AAACTTAATTCAATAATCAT+AGG + chr3_1:14656476-14656495 None:intergenic 15.0%
!! AAAAAATTGTTAAATAGGAA+TGG - chr3_1:14656625-14656644 Msa0350110:intron 15.0%
!! AAAAATTGTTAAATAGGAAT+GGG - chr3_1:14656626-14656645 Msa0350110:intron 15.0%
!!! GATTAATTTTATCGATTTAA+AGG - chr3_1:14656722-14656741 Msa0350110:intron 15.0%
!!! TTTAGGTTTTTTTTTTTTGT+TGG - chr3_1:14656973-14656992 Msa0350110:CDS 15.0%
!!! ATTTACTGAAATTTTAGTTT+TGG - chr3_1:14657217-14657236 Msa0350110:CDS 15.0%
!!! AAATATTAATAGTTTTAACG+GGG - chr3_1:14657623-14657642 Msa0350110:intron 15.0%
!!! AAGATCTTTAATAGTTTTAA+TGG - chr3_1:14657719-14657738 Msa0350110:intron 15.0%
!!! CTTTTACAATTTTAATGTTA+TGG - chr3_1:14657928-14657947 Msa0350110:CDS 15.0%
!!! TTTAACCTTTTTTTTTTGAA+AGG - chr3_1:14659173-14659192 Msa0350110:intron 15.0%
!! TGAAAAGGTTATATTTAATA+TGG + chr3_1:14659490-14659509 None:intergenic 15.0%
!! TAATGAATTGAAAAATGGAT+CGG + chr3_1:14656217-14656236 None:intergenic 20.0%
!!! ATCCATTTTTCAATTCATTA+TGG - chr3_1:14656217-14656236 Msa0350110:exon 20.0%
!!! TCCATTTTTCAATTCATTAT+GGG - chr3_1:14656218-14656237 Msa0350110:exon 20.0%
!! TGTGGAAAAAATTGTTAAAT+AGG - chr3_1:14656620-14656639 Msa0350110:intron 20.0%
!! ATGAAATTGTGAAATGATAA+TGG - chr3_1:14656748-14656767 Msa0350110:CDS 20.0%
!!! AAATGTTAGTTTAATTAAGC+TGG - chr3_1:14656669-14656688 Msa0350110:intron 20.0%
!!! TTTTTTGAAGAACCTAAATT+CGG + chr3_1:14656875-14656894 None:intergenic 20.0%
!! CTTCAAAAAAAAAATTAAGC+TGG - chr3_1:14656885-14656904 Msa0350110:intron 20.0%
!! AAAAAAAATTAAGCTGGATT+TGG - chr3_1:14656891-14656910 Msa0350110:intron 20.0%
!!! TTTTATGAATTTGTTGATTG+CGG - chr3_1:14656933-14656952 Msa0350110:CDS 20.0%
!!! TAGGTTTGTTATTGATTTAA+AGG - chr3_1:14657171-14657190 Msa0350110:CDS 20.0%
!!! TAGCTTTGTTATTGATTTAA+TGG - chr3_1:14657377-14657396 Msa0350110:CDS 20.0%
!!! GAAATTTTAATAGCTTTGTT+TGG - chr3_1:14657469-14657488 Msa0350110:CDS 20.0%
!! AGCAAAATAAAATTTACCTT+CGG + chr3_1:14657881-14657900 None:intergenic 20.0%
!!! TGGTTTTAAATTTTGAAAAG+AGG - chr3_1:14657975-14657994 Msa0350110:CDS 20.0%
!!! GGTTTTAAATTTTGAAAAGA+GGG - chr3_1:14657976-14657995 Msa0350110:CDS 20.0%
!!! TCTCTTTACTTTTTTAATGA+AGG - chr3_1:14658505-14658524 Msa0350110:intron 20.0%
!!! TTAAGTTTGTTTACATGATT+TGG - chr3_1:14658878-14658897 Msa0350110:intron 20.0%
!!! AAAATTGGTGTTTTAGAAAA+TGG - chr3_1:14659379-14659398 Msa0350110:intron 20.0%
!!! TTTCCCTTTTAGATTTTTTA+AGG - chr3_1:14659421-14659440 Msa0350110:intron 20.0%
!!! TTCCCTTTTAGATTTTTTAA+GGG - chr3_1:14659422-14659441 Msa0350110:intron 20.0%
!!! AAAGAAATTAACTTCTGAAA+AGG + chr3_1:14659505-14659524 None:intergenic 20.0%
!!! AATATCGTTTTAACTTTCAA+AGG + chr3_1:14660405-14660424 None:intergenic 20.0%
!! CAAATATATACAATACAAGT+GGG + chr3_1:14661004-14661023 None:intergenic 20.0%
!! TCAAATATATACAATACAAG+TGG + chr3_1:14661005-14661024 None:intergenic 20.0%
!! TGTATTGTATATATTTGATG+AGG - chr3_1:14661007-14661026 Msa0350110:five_prime_UTR 20.0%
! ATTTGAATATGGAAATGATG+AGG + chr3_1:14656045-14656064 None:intergenic 25.0%
! ACCCATAATGAATTGAAAAA+TGG + chr3_1:14656222-14656241 None:intergenic 25.0%
! GATTATGAGTTACATTACAT+TGG + chr3_1:14656342-14656361 None:intergenic 25.0%
!! AATTCCAAGAATTTTTGTTG+TGG - chr3_1:14656602-14656621 Msa0350110:intron 25.0%
!! TTTTCCACAACAAAAATTCT+TGG + chr3_1:14656609-14656628 None:intergenic 25.0%
!! AGTTTAATTAAGCTGGATTT+TGG - chr3_1:14656781-14656800 Msa0350110:CDS 25.0%
!! GTTTAATTAAGCTGGATTTT+GGG - chr3_1:14656782-14656801 Msa0350110:CDS 25.0%
!!! TTTATGAATTTGTTGATTGC+GGG - chr3_1:14656934-14656953 Msa0350110:CDS 25.0%
!!! GTTCTGGTTTTTGATATTTT+AGG - chr3_1:14656956-14656975 Msa0350110:CDS 25.0%
! GAAATTCGTTTATGAAATGA+TGG - chr3_1:14656998-14657017 Msa0350110:CDS 25.0%
! GTTGAAATGATAGCTTAATT+CGG - chr3_1:14657078-14657097 Msa0350110:CDS 25.0%
!!! TTTGGATTTTTTGTGTGTTT+AGG - chr3_1:14657152-14657171 Msa0350110:CDS 25.0%
! AGGATTATGAAATGTAATGA+TGG - chr3_1:14657191-14657210 Msa0350110:CDS 25.0%
! ATGATGAATTTGTAGATTTC+AGG - chr3_1:14657315-14657334 Msa0350110:CDS 25.0%
! GTTGAGATAATAGCTTAATT+CGG - chr3_1:14657510-14657529 Msa0350110:CDS 25.0%
!!! ATGATGAATTTGTTGATTAC+AGG - chr3_1:14657563-14657582 Msa0350110:intron 25.0%
! TCAGTAATGTACTAATTTAG+TGG - chr3_1:14657955-14657974 Msa0350110:CDS 25.0%
! ATAGTTCAATTCAATACTTG+AGG + chr3_1:14658207-14658226 None:intergenic 25.0%
!! TGCTTTAACTTAGTTAATGT+AGG - chr3_1:14658327-14658346 Msa0350110:intron 25.0%
!! CATTGTAATTTTCTTTCACA+AGG - chr3_1:14658405-14658424 Msa0350110:intron 25.0%
!! TTAATGAAGGTAGAATTTTC+TGG - chr3_1:14658518-14658537 Msa0350110:intron 25.0%
!! TAATGAAGGTAGAATTTTCT+GGG - chr3_1:14658519-14658538 Msa0350110:intron 25.0%
! GACATACTAGATAGTTATAT+AGG + chr3_1:14658586-14658605 None:intergenic 25.0%
! AATAGACAAATGACTTAAAC+AGG + chr3_1:14658827-14658846 None:intergenic 25.0%
!!! CATTCTTCACATTGTTTTTT+GGG + chr3_1:14659104-14659123 None:intergenic 25.0%
! CAAAAAACAATGTGAAGAAT+GGG - chr3_1:14659103-14659122 Msa0350110:intron 25.0%
! TTAAAGATTAATAACCTGCT+AGG + chr3_1:14659158-14659177 None:intergenic 25.0%
! GATTGCCTTTCAAAAAAAAA+AGG + chr3_1:14659181-14659200 None:intergenic 25.0%
! TGCCCTTAAAAAATCTAAAA+GGG + chr3_1:14659427-14659446 None:intergenic 25.0%
! ATGCCCTTAAAAAATCTAAA+AGG + chr3_1:14659428-14659447 None:intergenic 25.0%
!!! TTTTTTAAGGGCATATCTTA+TGG - chr3_1:14659434-14659453 Msa0350110:intron 25.0%
!!! TTTTTAAGGGCATATCTTAT+GGG - chr3_1:14659435-14659454 Msa0350110:intron 25.0%
! AGTATCACATTCAAAACATA+CGG + chr3_1:14659657-14659676 None:intergenic 25.0%
!! TTGTATTTGTTGGTTGAATT+TGG + chr3_1:14660166-14660185 None:intergenic 25.0%
! TCATACTTCTTTGTATTTGT+TGG + chr3_1:14660176-14660195 None:intergenic 25.0%
! GAAAACAATCAGCATTAATT+AGG + chr3_1:14660253-14660272 None:intergenic 25.0%
!!! AATTAATGCTGATTGTTTTC+AGG - chr3_1:14660253-14660272 Msa0350110:intron 25.0%
! TGGTAAATTGCTTATGTATA+TGG + chr3_1:14660573-14660592 None:intergenic 25.0%
!!! TGTCTTTTTGATTTGTGATT+TGG - chr3_1:14660722-14660741 Msa0350110:intron 25.0%
! ATATATTTGATGAGGATTGT+TGG - chr3_1:14661015-14661034 Msa0350110:five_prime_UTR 25.0%
! TATATTTGATGAGGATTGTT+GGG - chr3_1:14661016-14661035 Msa0350110:five_prime_UTR 25.0%
! TTCATTTTCATCATCACCTT+CGG - chr3_1:14656181-14656200 Msa0350110:three_prime_UTR 30.0%
TAAATCGATAACAAGCTATC+AGG + chr3_1:14656577-14656596 None:intergenic 30.0%
TTGTTAAATAGGAATGGGAA+TGG - chr3_1:14656631-14656650 Msa0350110:intron 30.0%
TGTTAAATAGGAATGGGAAT+GGG - chr3_1:14656632-14656651 Msa0350110:intron 30.0%
!!! ATGTTCGTTGTTGTTGTTTT+TGG - chr3_1:14657134-14657153 Msa0350110:CDS 30.0%
GAGAAATTGTGATATGAGAA+TGG - chr3_1:14657239-14657258 Msa0350110:CDS 30.0%
!! AATTTGTAGATTTCAGGTTC+TGG - chr3_1:14657321-14657340 Msa0350110:CDS 30.0%
!!! TTCTGGTTTCTGAAGTTTTA+TGG - chr3_1:14657338-14657357 Msa0350110:CDS 30.0%
TCAACAAATTCATCATCTCA+AGG + chr3_1:14657559-14657578 None:intergenic 30.0%
AAGACAATGTGCATCATAAT+GGG - chr3_1:14658001-14658020 Msa0350110:CDS 30.0%
TGTAATGTGTATTCGCAATT+CGG - chr3_1:14658171-14658190 Msa0350110:intron 30.0%
TCAATACTTGAGGAACAAAA+TGG + chr3_1:14658197-14658216 None:intergenic 30.0%
! CGATTTTCCGTTTATGTTTA+TGG - chr3_1:14658270-14658289 Msa0350110:intron 30.0%
CTGTCTACCATAAACATAAA+CGG + chr3_1:14658280-14658299 None:intergenic 30.0%
! AATTTTCTTTCACAAGGTTC+TGG - chr3_1:14658411-14658430 Msa0350110:intron 30.0%
TTTAGGTAATTGAGTTTCTG+AGG + chr3_1:14658657-14658676 None:intergenic 30.0%
!!! CATCAGCTATTTTAGTCTTT+AGG + chr3_1:14658674-14658693 None:intergenic 30.0%
! TAAAATAGCTGATGTTTTGC+TGG - chr3_1:14658680-14658699 Msa0350110:intron 30.0%
!!! CCATTCTTCACATTGTTTTT+TGG + chr3_1:14659105-14659124 None:intergenic 30.0%
CCAAAAAACAATGTGAAGAA+TGG - chr3_1:14659102-14659121 Msa0350110:intron 30.0%
GTACATTACATGCATTAAAC+AGG + chr3_1:14659209-14659228 None:intergenic 30.0%
AACAACCACACAATCAATTT+CGG - chr3_1:14659246-14659265 Msa0350110:intron 30.0%
TTATTTACTATTAGCGCGAT+GGG - chr3_1:14659280-14659299 Msa0350110:intron 30.0%
TAAGCCTTTCTTATACAAGA+TGG + chr3_1:14659309-14659328 None:intergenic 30.0%
TCTTGTATAAGAAAGGCTTA+AGG - chr3_1:14659309-14659328 Msa0350110:intron 30.0%
AATGTGTTCCTCTTCAAAAT+TGG - chr3_1:14659364-14659383 Msa0350110:intron 30.0%
!! CTAAAACACCAATTTTGAAG+AGG + chr3_1:14659375-14659394 None:intergenic 30.0%
!! TTTTAAGGGCATATCTTATG+GGG - chr3_1:14659436-14659455 Msa0350110:intron 30.0%
GTTATTTGGATACACAAACT+GGG + chr3_1:14659807-14659826 None:intergenic 30.0%
! TGTTATTTGGATACACAAAC+TGG + chr3_1:14659808-14659827 None:intergenic 30.0%
! ATACAAAGAAGTATGATCCT+TGG - chr3_1:14660180-14660199 Msa0350110:intron 30.0%
! TACAAAGAAGTATGATCCTT+GGG - chr3_1:14660181-14660200 Msa0350110:intron 30.0%
AGACTTCTAATTCTTTCACA+TGG + chr3_1:14660216-14660235 None:intergenic 30.0%
AGAAACCTGTATGATTTAGT+GGG + chr3_1:14660694-14660713 None:intergenic 30.0%
TCATTCTCATCAAAAGCAAT+TGG + chr3_1:14660774-14660793 None:intergenic 30.0%
AGGATTGTTGGGTTAAATAT+TGG - chr3_1:14661027-14661046 Msa0350110:five_prime_UTR 30.0%
GGATTGTTGGGTTAAATATT+GGG - chr3_1:14661028-14661047 Msa0350110:five_prime_UTR 30.0%
! AGAAGAGCATATCATTGAAG+AGG + chr3_1:14656153-14656172 None:intergenic 35.0%
TCTTCAATGATATGCTCTTC+TGG - chr3_1:14656152-14656171 Msa0350110:three_prime_UTR 35.0%
GATCGGAAAAAAAAAACCGA+AGG + chr3_1:14656200-14656219 None:intergenic 35.0%
!! ACATTACATTGGCTTTGTTG+TGG + chr3_1:14656331-14656350 None:intergenic 35.0%
!! AATTAAGCTGGATTTTGGGT+TGG - chr3_1:14656786-14656805 Msa0350110:CDS 35.0%
TTGAAGAACCTAAATTCGGA+CGG + chr3_1:14656871-14656890 None:intergenic 35.0%
GTGAAATACTGAAATGTGAG+TGG - chr3_1:14657056-14657075 Msa0350110:CDS 35.0%
CAACGAACATAAGAACAAAG+AGG + chr3_1:14657124-14657143 None:intergenic 35.0%
CAAATTCATCATCTCAAGGA+GGG + chr3_1:14657555-14657574 None:intergenic 35.0%
ACAAATTCATCATCTCAAGG+AGG + chr3_1:14657556-14657575 None:intergenic 35.0%
!! CTACTGGTTGCTGAAATTTT+TGG - chr3_1:14657678-14657697 Msa0350110:intron 35.0%
! GAATTTGCTCTTTGTAAAGC+AGG - chr3_1:14657813-14657832 Msa0350110:intron 35.0%
GAAGACAATGTGCATCATAA+TGG - chr3_1:14658000-14658019 Msa0350110:CDS 35.0%
!! TCATAATGGGAGGAATTTTG+AGG - chr3_1:14658014-14658033 Msa0350110:CDS 35.0%
GTTTCTGTTTAAGTGAAGTG+AGG - chr3_1:14658241-14658260 Msa0350110:intron 35.0%
GGTAAGTGTTATACTAACGA+TGG + chr3_1:14658355-14658374 None:intergenic 35.0%
TTACAATGTAGCGAGTATCA+AGG + chr3_1:14658393-14658412 None:intergenic 35.0%
TTACAAAAAGTTTGTGAGCC+AGG + chr3_1:14658633-14658652 None:intergenic 35.0%
!!! TGATTTGGTAAACGTTTTGC+AGG - chr3_1:14658893-14658912 Msa0350110:intron 35.0%
GCAAAGTTTCTTAAAGCTTG+TGG - chr3_1:14658915-14658934 Msa0350110:intron 35.0%
ATGCTTTCCGAATTTCAGTA+GGG + chr3_1:14658956-14658975 None:intergenic 35.0%
! TACTGAAATTCGGAAAGCAT+CGG - chr3_1:14658956-14658975 Msa0350110:intron 35.0%
TTGAATGGTTGGACATTAGT+TGG + chr3_1:14659071-14659090 None:intergenic 35.0%
!!! TCACATTGTTTTTTGGGAGT+TGG + chr3_1:14659098-14659117 None:intergenic 35.0%
CTTATTTACTATTAGCGCGA+TGG - chr3_1:14659279-14659298 Msa0350110:intron 35.0%
GACACCATCTTGTATAAGAA+AGG - chr3_1:14659302-14659321 Msa0350110:intron 35.0%
! GAAGAGGAACACATTTTCTT+AGG + chr3_1:14659359-14659378 None:intergenic 35.0%
CAATGCACACAATACTCAAT+GGG - chr3_1:14659547-14659566 Msa0350110:intron 35.0%
ATGGGAATATCATGACTCTT+CGG - chr3_1:14659565-14659584 Msa0350110:intron 35.0%
CTTATTCATTTCAGTCCCAT+CGG + chr3_1:14659621-14659640 None:intergenic 35.0%
GATGGGACTGAAATGAATAA+GGG - chr3_1:14659620-14659639 Msa0350110:intron 35.0%
ATGGGACTGAAATGAATAAG+GGG - chr3_1:14659621-14659640 Msa0350110:intron 35.0%
TATTTCATCCTGTGAGTCAT+CGG - chr3_1:14659679-14659698 Msa0350110:intron 35.0%
TCCCTTCAGATATCTTCATT+GGG + chr3_1:14659751-14659770 None:intergenic 35.0%
ATCCCTTCAGATATCTTCAT+TGG + chr3_1:14659752-14659771 None:intergenic 35.0%
!! ACGGTAGATTCACTTTTATC+TGG + chr3_1:14659947-14659966 None:intergenic 35.0%
AGATAAAAGTGAATCTACCG+TGG - chr3_1:14659946-14659965 Msa0350110:intron 35.0%
GAGAAGAAAGAAAATGGAGA+TGG - chr3_1:14660018-14660037 Msa0350110:intron 35.0%
AGAAGTTTGTACTTCTGATG+CGG - chr3_1:14660426-14660445 Msa0350110:intron 35.0%
! GTAAGTGGTCTTTTGTCAAA+TGG + chr3_1:14660593-14660612 None:intergenic 35.0%
GCACTCAATACAAAAGTAAG+TGG + chr3_1:14660608-14660627 None:intergenic 35.0%
!! AGTCTCGCGATTTTGATAAT+TGG - chr3_1:14660667-14660686 Msa0350110:intron 35.0%
GAGAAACCTGTATGATTTAG+TGG + chr3_1:14660695-14660714 None:intergenic 35.0%
!! TGATTTGTGATTTGGTTCAC+AGG - chr3_1:14660730-14660749 Msa0350110:intron 35.0%
GTTCACAGGAAAGATATTTG+CGG - chr3_1:14660744-14660763 Msa0350110:CDS 35.0%
TACCTCATAGAGTAATGAGA+TGG + chr3_1:14660880-14660899 None:intergenic 35.0%
TTGGGTTAAATATTGGGCAT+TGG - chr3_1:14661034-14661053 Msa0350110:five_prime_UTR 35.0%
TGGGTTAAATATTGGGCATT+GGG - chr3_1:14661035-14661054 Msa0350110:five_prime_UTR 35.0%
GAACACGAAAGCAAGTGAAA+AGG + chr3_1:14656247-14656266 None:intergenic 40.0%
!! TATGAAGCACTGACACTTCT+TGG - chr3_1:14656406-14656425 Msa0350110:intron 40.0%
CACTGACACTTCTTGGATTA+GGG - chr3_1:14656413-14656432 Msa0350110:intron 40.0%
! ACTGACACTTCTTGGATTAG+GGG - chr3_1:14656414-14656433 Msa0350110:intron 40.0%
AATAGGAATGGGAATGGGAA+TGG - chr3_1:14656637-14656656 Msa0350110:intron 40.0%
TGAAGAACCTAAATTCGGAC+GGG + chr3_1:14656870-14656889 None:intergenic 40.0%
!! AATTTGTTGATTGCGGGTTC+TGG - chr3_1:14656940-14656959 Msa0350110:CDS 40.0%
! TTGGTAGCTAAAACGTCGAA+TGG - chr3_1:14657488-14657507 Msa0350110:CDS 40.0%
! TTCTGAGAATGTTCTGCTAC+TGG - chr3_1:14657662-14657681 Msa0350110:intron 40.0%
!! CTTTGACTTTTCGATGTGAC+TGG - chr3_1:14657787-14657806 Msa0350110:intron 40.0%
CTTTGTAAAGCAGGATGATG+TGG - chr3_1:14657822-14657841 Msa0350110:intron 40.0%
!! TCTACTTTGTTTCTGACCGA+AGG - chr3_1:14657862-14657881 Msa0350110:intron 40.0%
! ACAATGTGCATCATAATGGG+AGG - chr3_1:14658004-14658023 Msa0350110:CDS 40.0%
!! TAATGGGAGGAATTTTGAGG+AGG - chr3_1:14658017-14658036 Msa0350110:CDS 40.0%
!! AATGGGAGGAATTTTGAGGA+GGG - chr3_1:14658018-14658037 Msa0350110:CDS 40.0%
TGATAGGCAGCTTAAAGATG+AGG - chr3_1:14658053-14658072 Msa0350110:CDS 40.0%
TTCATGCATGTTTAGCTGTC+TGG - chr3_1:14658131-14658150 Msa0350110:CDS 40.0%
!! AGCACATTGAAGAAGCACTA+TGG + chr3_1:14658303-14658322 None:intergenic 40.0%
TCAAGGCTTACTTAGTATCG+TGG + chr3_1:14658376-14658395 None:intergenic 40.0%
! TAGAATTTTCTGGGTGTCCA+TGG - chr3_1:14658528-14658547 Msa0350110:intron 40.0%
ATACACGACAAATCATAGCC+AGG + chr3_1:14658560-14658579 None:intergenic 40.0%
! AATAGCTGATGTTTTGCTGG+TGG - chr3_1:14658683-14658702 Msa0350110:intron 40.0%
CAAGTACCCCTACTGAAATT+CGG - chr3_1:14658946-14658965 Msa0350110:intron 40.0%
TGCTTTCCGAATTTCAGTAG+GGG + chr3_1:14658955-14658974 None:intergenic 40.0%
GATGCTTTCCGAATTTCAGT+AGG + chr3_1:14658957-14658976 None:intergenic 40.0%
CCAGAATCGTTACTACATGA+AGG + chr3_1:14658999-14659018 None:intergenic 40.0%
CCTTCATGTAGTAACGATTC+TGG - chr3_1:14658996-14659015 Msa0350110:intron 40.0%
AGAAGCCAAGAACGAAACTT+TGG + chr3_1:14659026-14659045 None:intergenic 40.0%
!!! CATTGTTTTTTGGGAGTTGG+CGG + chr3_1:14659095-14659114 None:intergenic 40.0%
TTAATAACCTGCTAGGTGTG+TGG + chr3_1:14659151-14659170 None:intergenic 40.0%
AACCACACAATCAATTTCGG+TGG - chr3_1:14659249-14659268 Msa0350110:intron 40.0%
ATCCACCGAAATTGATTGTG+TGG + chr3_1:14659254-14659273 None:intergenic 40.0%
! CCATTGAGTATTGTGTGCAT+TGG + chr3_1:14659549-14659568 None:intergenic 40.0%
CCAATGCACACAATACTCAA+TGG - chr3_1:14659546-14659565 Msa0350110:intron 40.0%
GAATATCATGACTCTTCGGA+AGG - chr3_1:14659569-14659588 Msa0350110:intron 40.0%
CGATGGGACTGAAATGAATA+AGG - chr3_1:14659619-14659638 Msa0350110:intron 40.0%
ATCTTCATTGGGGTAGGATT+TGG + chr3_1:14659740-14659759 None:intergenic 40.0%
TCAGATATCTTCATTGGGGT+AGG + chr3_1:14659746-14659765 None:intergenic 40.0%
ACCCCAATGAAGATATCTGA+AGG - chr3_1:14659746-14659765 Msa0350110:intron 40.0%
CCCTTCAGATATCTTCATTG+GGG + chr3_1:14659750-14659769 None:intergenic 40.0%
CCCCAATGAAGATATCTGAA+GGG - chr3_1:14659747-14659766 Msa0350110:intron 40.0%
TTAACAGGGTAAACAGTTCC+AGG + chr3_1:14659782-14659801 None:intergenic 40.0%
ACACAAACTGGGACTTAACA+GGG + chr3_1:14659796-14659815 None:intergenic 40.0%
TACACAAACTGGGACTTAAC+AGG + chr3_1:14659797-14659816 None:intergenic 40.0%
GTGTATCCAAATAACAGCCT+AGG - chr3_1:14659812-14659831 Msa0350110:intron 40.0%
! CTCTAAGAGCAAGATACTTG+AGG - chr3_1:14659844-14659863 Msa0350110:intron 40.0%
!! GAAGCCTGCATCTGTTATTT+TGG - chr3_1:14659991-14660010 Msa0350110:intron 40.0%
TCCTCCAAAATAACAGATGC+AGG + chr3_1:14659998-14660017 None:intergenic 40.0%
GGAGGAGAGAAGAAAGAAAA+TGG - chr3_1:14660012-14660031 Msa0350110:intron 40.0%
AGGATACTATCATCGCTCAA+AGG - chr3_1:14660336-14660355 Msa0350110:intron 40.0%
TTGGTCCCACTAAATCATAC+AGG - chr3_1:14660686-14660705 Msa0350110:intron 40.0%
GTCCATCTCATTACTCTATG+AGG - chr3_1:14660875-14660894 Msa0350110:five_prime_UTR 40.0%
!! AATATTGGGCATTGGGAGAT+CGG - chr3_1:14661042-14661061 Msa0350110:five_prime_UTR 40.0%
CTGACCTACCTTCTTCACTT+GGG - chr3_1:14656126-14656145 Msa0350110:three_prime_UTR 45.0%
! GCACTGACACTTCTTGGATT+AGG - chr3_1:14656412-14656431 Msa0350110:intron 45.0%
CAAAGTCACAGACACTGACA+CGG + chr3_1:14656554-14656573 None:intergenic 45.0%
!!! TAAGCTGGATTTTGGGTTGG+TGG - chr3_1:14656789-14656808 Msa0350110:intron 45.0%
!!! GGATTTTGGGTTGGTGGTAT+TGG - chr3_1:14656795-14656814 Msa0350110:intron 45.0%
GAATGGATCCTAAGACCTTG+AGG + chr3_1:14656845-14656864 None:intergenic 45.0%
GAAGAACCTAAATTCGGACG+GGG + chr3_1:14656869-14656888 None:intergenic 45.0%
AGGGATCACAGAGTGATGAT+AGG - chr3_1:14658037-14658056 Msa0350110:CDS 45.0%
ATGCATGTTTAGCTGTCTGG+AGG - chr3_1:14658134-14658153 Msa0350110:CDS 45.0%
! TTTCACAAGGTTCTGGCAGT+AGG - chr3_1:14658418-14658437 Msa0350110:intron 45.0%
! TTCACAAGGTTCTGGCAGTA+GGG - chr3_1:14658419-14658438 Msa0350110:intron 45.0%
!! TTCAGTAGGGGTACTTGCTA+TGG + chr3_1:14658943-14658962 None:intergenic 45.0%
GTCCTCCAAAGTTTCGTTCT+TGG - chr3_1:14659018-14659037 Msa0350110:CDS 45.0%
AGCCAAGAACGAAACTTTGG+AGG + chr3_1:14659023-14659042 None:intergenic 45.0%
ATGACTCTTCGGAAGGAAGT+GGG - chr3_1:14659576-14659595 Msa0350110:intron 45.0%
TTCATTTCAGTCCCATCGGT+CGG + chr3_1:14659617-14659636 None:intergenic 45.0%
GGACTGAAATGAATAAGGGG+AGG - chr3_1:14659624-14659643 Msa0350110:intron 45.0%
TCCAAATAACAGCCTAGGTG+AGG - chr3_1:14659817-14659836 Msa0350110:intron 45.0%
TCCTCACCTAGGCTGTTATT+TGG + chr3_1:14659821-14659840 None:intergenic 45.0%
TCTTAGAGACATCCTCACCT+AGG + chr3_1:14659832-14659851 None:intergenic 45.0%
GAGCAAGATACTTGAGGAAG+AGG - chr3_1:14659850-14659869 Msa0350110:intron 45.0%
ATGTTCCTGCGCAAGATTCA+AGG - chr3_1:14659876-14659895 Msa0350110:intron 45.0%
ATCTTCCTTGAATCTTGCGC+AGG + chr3_1:14659884-14659903 None:intergenic 45.0%
AGTGAATCTACCGTGGAAGA+AGG - chr3_1:14659953-14659972 Msa0350110:intron 45.0%
AGAAGACAAGCCTTCTTCCA+CGG + chr3_1:14659966-14659985 None:intergenic 45.0%
TGGAAGAAGGCTTGTCTTCT+TGG - chr3_1:14659966-14659985 Msa0350110:intron 45.0%
!!! GCCTGCATCTGTTATTTTGG+AGG - chr3_1:14659994-14660013 Msa0350110:intron 45.0%
TGCTGCACATTGGATTGAAG+AGG - chr3_1:14660093-14660112 Msa0350110:intron 45.0%
CACATGGAAAATAGCTCCCA+AGG + chr3_1:14660200-14660219 None:intergenic 45.0%
TTCTCCAACCTCTCTTCGAA+CGG + chr3_1:14660305-14660324 None:intergenic 45.0%
!! GTTGGAGAAGGCATTATCTG+AGG - chr3_1:14660316-14660335 Msa0350110:intron 45.0%
GCAAACAGCAGTGCTTTCAT+AGG + chr3_1:14660366-14660385 None:intergenic 45.0%
TAGATATCAACACGACGCCA+CGG + chr3_1:14660847-14660866 None:intergenic 45.0%
! GGCGTCGTGTTGATATCTAT+AGG - chr3_1:14660848-14660867 Msa0350110:five_prime_UTR 45.0%
AGCACTGCATTGGGACTTAA+TGG + chr3_1:14660923-14660942 None:intergenic 45.0%
CAAGCAATCAGCACTGCATT+GGG + chr3_1:14660932-14660951 None:intergenic 45.0%
!!! AAAAATATTAATAGTTTTAA+CGG - chr3_1:14657621-14657640 Msa0350110:intron 5.0%
CCAAGTGAAGAAGGTAGGTC+AGG + chr3_1:14656128-14656147 None:intergenic 50.0%
CCTGACCTACCTTCTTCACT+TGG - chr3_1:14656125-14656144 Msa0350110:three_prime_UTR 50.0%
AGGACCCAAGTGAAGAAGGT+AGG + chr3_1:14656133-14656152 None:intergenic 50.0%
GAAGAGGACCCAAGTGAAGA+AGG + chr3_1:14656137-14656156 None:intergenic 50.0%
!! TTGGGTTGGTGGTATTGGCT+TGG - chr3_1:14656800-14656819 Msa0350110:intron 50.0%
!! TGGGTTGGTGGTATTGGCTT+GGG - chr3_1:14656801-14656820 Msa0350110:intron 50.0%
TGGATCCTAAGACCTTGAGG+AGG + chr3_1:14656842-14656861 None:intergenic 50.0%
CTAAATTCGGACGGGGAGAA+TGG + chr3_1:14656862-14656881 None:intergenic 50.0%
CATTCTCCCCGTCCGAATTT+AGG - chr3_1:14656860-14656879 Msa0350110:intron 50.0%
TCATAGCCAGGAATGCACCA+TGG + chr3_1:14658548-14658567 None:intergenic 50.0%
CTGTGAGCATATGCATGTCC+TGG - chr3_1:14658612-14658631 Msa0350110:intron 50.0%
! GCTGATGTTTTGCTGGTGGA+AGG - chr3_1:14658687-14658706 Msa0350110:intron 50.0%
!! GAGTTGGCGGATTGAATGGT+TGG + chr3_1:14659082-14659101 None:intergenic 50.0%
!! TTGGGAGTTGGCGGATTGAA+TGG + chr3_1:14659086-14659105 None:intergenic 50.0%
CATGACTCTTCGGAAGGAAG+TGG - chr3_1:14659575-14659594 Msa0350110:intron 50.0%
!! TCCTGTGAGTCATCGGCTTA+TGG - chr3_1:14659686-14659705 Msa0350110:intron 50.0%
ACCATAAGCCGATGACTCAC+AGG + chr3_1:14659690-14659709 None:intergenic 50.0%
!! TGTGAGTCATCGGCTTATGG+TGG - chr3_1:14659689-14659708 Msa0350110:intron 50.0%
!! AGTCATCGGCTTATGGTGGA+TGG - chr3_1:14659693-14659712 Msa0350110:intron 50.0%
TCTGAAGGGATGCAAACTCC+TGG - chr3_1:14659761-14659780 Msa0350110:intron 50.0%
! CCTATCGACAGGAGTTTTGC+GGG + chr3_1:14660056-14660075 None:intergenic 50.0%
! GCCTATCGACAGGAGTTTTG+CGG + chr3_1:14660057-14660076 None:intergenic 50.0%
CTGTCGATAGGCCCATCATT+GGG - chr3_1:14660065-14660084 Msa0350110:intron 50.0%
GCAGCAACCATCCCAATGAT+GGG + chr3_1:14660079-14660098 None:intergenic 50.0%
TGCAGCAACCATCCCAATGA+TGG + chr3_1:14660080-14660099 None:intergenic 50.0%
TTGGGATGGTTGCTGCACAT+TGG - chr3_1:14660083-14660102 Msa0350110:intron 50.0%
TTCAGGACCAGAAAGTGAGC+TGG - chr3_1:14660270-14660289 Msa0350110:intron 50.0%
TAGCATGCCAGCTCACTTTC+TGG + chr3_1:14660280-14660299 None:intergenic 50.0%
GTTCGAAGAGAGGTTGGAGA+AGG - chr3_1:14660304-14660323 Msa0350110:intron 50.0%
CCAAGCAATCAGCACTGCAT+TGG + chr3_1:14660933-14660952 None:intergenic 50.0%
!! CCAATGCAGTGCTGATTGCT+TGG - chr3_1:14660930-14660949 Msa0350110:five_prime_UTR 50.0%
! GCTTTGTTGTGGTGCCGAGA+CGG + chr3_1:14656320-14656339 None:intergenic 55.0%
ACACGGCACAGACACTGACA+CGG + chr3_1:14656537-14656556 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG - chr3_1:14656808-14656827 Msa0350110:intron 55.0%
GTGCTCCTCCTCAAGGTCTT+AGG - chr3_1:14656834-14656853 Msa0350110:intron 55.0%
GTTCAGACCACACACCTAGC+AGG - chr3_1:14659141-14659160 Msa0350110:intron 55.0%
TCTTCGGAAGGAAGTGGGCA+GGG - chr3_1:14659581-14659600 Msa0350110:intron 55.0%
GGAGCTATCATCCGACCGAT+GGG - chr3_1:14659603-14659622 Msa0350110:intron 55.0%
CCCGCAAAACTCCTGTCGAT+AGG - chr3_1:14660053-14660072 Msa0350110:intron 55.0%
!! CCAATGATGGGCCTATCGAC+AGG + chr3_1:14660067-14660086 None:intergenic 55.0%
CCTGTCGATAGGCCCATCAT+TGG - chr3_1:14660064-14660083 Msa0350110:intron 55.0%
CGATAGGCCCATCATTGGGA+TGG - chr3_1:14660069-14660088 Msa0350110:intron 55.0%
CTGATGCTCCTCCTCCTAAG+TGG - chr3_1:14660122-14660141 Msa0350110:intron 55.0%
ATGCTCCTCCTCCTAAGTGG+TGG - chr3_1:14660125-14660144 Msa0350110:intron 55.0%
TGCTCCTCCTCCTAAGTGGT+GGG - chr3_1:14660126-14660145 Msa0350110:intron 55.0%
TTGCCATCCCACCACTTAGG+AGG + chr3_1:14660136-14660155 None:intergenic 55.0%
CCATTGCCATCCCACCACTT+AGG + chr3_1:14660139-14660158 None:intergenic 55.0%
! CCTAAGTGGTGGGATGGCAA+TGG - chr3_1:14660136-14660155 Msa0350110:intron 55.0%
ATGCTACGCCGTTCGAAGAG+AGG - chr3_1:14660294-14660313 Msa0350110:intron 55.0%
TACGCCGTTCGAAGAGAGGT+TGG - chr3_1:14660298-14660317 Msa0350110:intron 55.0%
TTCATCCCATCCACAGTCCG+TGG - chr3_1:14660827-14660846 Msa0350110:exon 55.0%
! GTTGTGGTGCCGAGACGGTA+CGG + chr3_1:14656315-14656334 None:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG - chr3_1:14656807-14656826 Msa0350110:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr3_1:14656828-14656847 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr3_1:14656827-14656846 Msa0350110:intron 60.0%
GGGTGTCCATGGTGCATTCC+TGG - chr3_1:14658539-14658558 Msa0350110:intron 60.0%
CTCTTCGGAAGGAAGTGGGC+AGG - chr3_1:14659580-14659599 Msa0350110:intron 60.0%
CTTCGGAAGGAAGTGGGCAG+GGG - chr3_1:14659582-14659601 Msa0350110:intron 60.0%
GGGAGCTATCATCCGACCGA+TGG - chr3_1:14659602-14659621 Msa0350110:intron 60.0%
CCATCCCACCACTTAGGAGG+AGG + chr3_1:14660133-14660152 None:intergenic 60.0%
! CCTCCTCCTAAGTGGTGGGA+TGG - chr3_1:14660130-14660149 Msa0350110:intron 60.0%
! CGACGCCACGGACTGTGGAT+GGG + chr3_1:14660835-14660854 None:intergenic 65.0%
! ACGACGCCACGGACTGTGGA+TGG + chr3_1:14660836-14660855 None:intergenic 65.0%
! CAACACGACGCCACGGACTG+TGG + chr3_1:14660840-14660859 None:intergenic 65.0%
! CGGCGGCGGATTTAGCGTGG+TGG + chr3_1:14656283-14656302 None:intergenic 70.0%
! TGGCGGCGGCGGATTTAGCG+TGG + chr3_1:14656286-14656305 None:intergenic 70.0%
! GTGGTGCCGAGACGGTACGG+CGG + chr3_1:14656312-14656331 None:intergenic 70.0%
AGACGGTACGGCGGCGGTGG+CGG + chr3_1:14656303-14656322 None:intergenic 75.0%
CCACCGCCGCCGTACCGTCT+CGG - chr3_1:14656303-14656322 Msa0350110:CDS 75.0%
GTGCCGAGACGGTACGGCGG+CGG + chr3_1:14656309-14656328 None:intergenic 75.0%
! CCGAGACGGTACGGCGGCGG+TGG + chr3_1:14656306-14656325 None:intergenic 80.0%
!! TACGGCGGCGGTGGCGGCGG+CGG + chr3_1:14656297-14656316 None:intergenic 85.0%
!! CGGTACGGCGGCGGTGGCGG+CGG + chr3_1:14656300-14656319 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 14656016 14661065 14656016 ID=Msa0350110;Name=Msa0350110
chr3_1 mRNA 14656016 14661065 14656016 ID=Msa0350110-mRNA-1;Parent=Msa0350110;Name=Msa0350110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=220|1|1|1|1|1|7|205|442
chr3_1 exon 14656016 14656329 14656016 ID=Msa0350110-mRNA-1:exon:3635;Parent=Msa0350110-mRNA-1
chr3_1 exon 14656724 14656806 14656724 ID=Msa0350110-mRNA-1:exon:3634;Parent=Msa0350110-mRNA-1
chr3_1 exon 14656892 14657543 14656892 ID=Msa0350110-mRNA-1:exon:3633;Parent=Msa0350110-mRNA-1
chr3_1 exon 14657919 14658166 14657919 ID=Msa0350110-mRNA-1:exon:3632;Parent=Msa0350110-mRNA-1
chr3_1 exon 14659007 14659086 14659007 ID=Msa0350110-mRNA-1:exon:3631;Parent=Msa0350110-mRNA-1
chr3_1 exon 14659198 14659246 14659198 ID=Msa0350110-mRNA-1:exon:3630;Parent=Msa0350110-mRNA-1
chr3_1 exon 14660738 14661065 14660738 ID=Msa0350110-mRNA-1:exon:3629;Parent=Msa0350110-mRNA-1
chr3_1 five_prime_UTR 14660846 14661065 14660846 ID=Msa0350110-mRNA-1:five_prime_utr;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14660738 14660845 14660738 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14659198 14659246 14659198 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14659007 14659086 14659007 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14657919 14658166 14657919 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14656892 14657543 14656892 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14656724 14656806 14656724 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 CDS 14656221 14656329 14656221 ID=Msa0350110-mRNA-1:cds;Parent=Msa0350110-mRNA-1
chr3_1 three_prime_UTR 14656016 14656220 14656016 ID=Msa0350110-mRNA-1:three_prime_utr;Parent=Msa0350110-mRNA-1
Gene Sequence

>Msa0350110

ATGGGTTGCCTTTTCACTTGCTTTCGTGTTCGTGATAACAAACGCCACCACGCTAAATCCGCCGCCGCCACCGCCGCCGTACCGTCTCGGCACCACAACAAAGCCAATGATGATGTGGCGTCTCGAAATCGTTTGTCTACTTTGTTTCTGACCGAAGAGGGAGAAGACAATGTGCATCATAATGGGAGGAATTTTGAGGAGGGATCACAGAGTGATGATAGGCAGCTTAAAGATGAGGCAAAGTTTCTTAAAGCTTGTGGTACCATAGCAAGTACCCCTACTGAAATTCGGAAAGCATCGGAGAAACTAAAAGTGTCACCTTCATGTAGTAACGATTCTGGTCCTCCAAAGTTTCGTTCTTGGCTTCTTGATACATCTGCTGAGAATGTTCCAACTAATGTCCAACCATTCAATCCGCCAACTCCCAAAAAACAATGTGAAGAATGGGAGAAAATAACAGATTGTTCAGACCACACACCTAGCAGCTGTATCTCCAATGCACACAATACTCAATGGGAATATCATGACTCTTCGGAAGGAAGTGGGCAGGGGAGCTATCATCCGACCGATGGGACTGAAATGAATAAGGGGAGGAACAAGTCCGTATGTTTTGAATGTGATACTGATATTTCATCCTGTGAGTCATCGGCTTATGGTGGATGGCGTACGAAGAAAACAGAGTCACCAAATCCTACCCCAATGAAGATATCTGAAGGGATGCAAACTCCTGGAACTGTTTACCCTGTTAAGTCCCAGTTTGTGTATCCAAATAACAGCCTAGGTGAGGATGTCTCTAAGAGCAAGATACTTGAGGAAGAGGATTATGTTCCTGCGCAAGATTCAAGGAAGATGAACAAGTCAATTGAGCAGTCTCAAAATGCAACGTCTACACCAGATAAAAGTGAATCTACCGTGGAAGAAGGCTTGTCTTCTTGGTTGAAGCCTGCATCTGTTATTTTGGAGGAGAGAAGAAAGAAAATGGAGATGGCTTATAATCAGACCCGCAAAACTCCTGTCGATAGGCCCATCATTGGGATGGTTGCTGCACATTGGATTGAAGAGGAAAATTCTGATGCTCCTCCTCCTAAGTGGTGGGATGGCAATGGCATACCAAATTCAACCAACAAATACAAAGAAGACCAGAAAGTGAGCTGGCATGCTACGCCGTTCGAAGAGAGGTTGGAGAAGGCATTATCTGAGGATACTATCATCGCTCAAAGGAAAGATATTTGCGGAAAACCAATTGCTTTTGATGAGAATGAAGAAAGCGATACTGCATTGTCTCATTTGAAATCTTCATCCCATCCACAGTCCGTGGCGTCGTGTTGA

Protein sequence

>Msa0350110

MGCLFTCFRVRDNKRHHAKSAAATAAVPSRHHNKANDDVASRNRLSTLFLTEEGEDNVHHNGRNFEEGSQSDDRQLKDEAKFLKACGTIASTPTEIRKASEKLKVSPSCSNDSGPPKFRSWLLDTSAENVPTNVQPFNPPTPKKQCEEWEKITDCSDHTPSSCISNAHNTQWEYHDSSEGSGQGSYHPTDGTEMNKGRNKSVCFECDTDISSCESSAYGGWRTKKTESPNPTPMKISEGMQTPGTVYPVKSQFVYPNNSLGEDVSKSKILEEEDYVPAQDSRKMNKSIEQSQNATSTPDKSESTVEEGLSSWLKPASVILEERRKKMEMAYNQTRKTPVDRPIIGMVAAHWIEEENSDAPPPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEDTIIAQRKDICGKPIAFDENEESDTALSHLKSSSHPQSVASC*