AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0498370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498370 MtrunA17_Chr3g0095751 94.647 467 20 5 1 466 1 463 0.0 868
Msa0498370 MtrunA17_Chr5g0442731 44.877 488 212 11 1 446 1 473 7.07e-119 356
Msa0498370 MtrunA17_Chr1g0183391 39.683 126 62 4 308 425 317 436 5.15e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0498370 AT1G06660.1 38.400 500 222 18 18 465 15 480 5.23e-74 241
Msa0498370 AT2G30820.2 35.470 468 216 15 25 457 1 417 6.03e-60 202
Msa0498370 AT2G30820.1 35.470 468 216 15 25 457 1 417 6.03e-60 202

Find 148 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCACCTAGGCTGTTATT+TGG 0.189762 3_4:+34489042 None:intergenic
GTCCTCCAAAGTTTCGTTCT+TGG 0.196344 3_4:-34489842 Msa0498370:CDS
AGGATTGTTGGGTTAAATAT+TGG 0.204732 3_4:-34487833 Msa0498370:three_prime_UTR
GAAGCCTGCATCTGTTATTT+TGG 0.212458 3_4:-34488869 Msa0498370:CDS
CGGCACGGCGGCGGAGGCAG+CGG 0.226596 3_4:+34492717 None:intergenic
TAGCATGCCAGCTCACTTTC+TGG 0.229927 3_4:+34488583 None:intergenic
TTGTATTTGTTGGTTGAATT+TGG 0.246872 3_4:+34488697 None:intergenic
TGGAAGAAGGCTTGTCTTCT+TGG 0.254792 3_4:-34488894 Msa0498370:CDS
CGATGGGACTGAAATGAATA+AGG 0.261654 3_4:-34489241 Msa0498370:CDS
GGAGGAGAGAAGAAAGAAAA+TGG 0.286742 3_4:-34488848 Msa0498370:CDS
ATCTTCATTGGGGTAGGATT+TGG 0.293500 3_4:+34489123 None:intergenic
TCTTCAATGATATGCTCTTC+TGG 0.313976 3_4:-34492861 Msa0498370:exon
TCCTGTGAGTCATCGGCTTA+TGG 0.325210 3_4:-34489174 Msa0498370:CDS
AGCACTGCATTGGGACTTAA+TGG 0.325533 3_4:+34487940 None:intergenic
TCATACTTCTTTGTATTTGT+TGG 0.327303 3_4:+34488687 None:intergenic
GGATTGTTGGGTTAAATATT+GGG 0.336604 3_4:-34487832 Msa0498370:three_prime_UTR
TACACAAACTGGGACTTAAC+AGG 0.339806 3_4:+34489066 None:intergenic
ATCCCTTCAGATATCTTCAT+TGG 0.349727 3_4:+34489111 None:intergenic
CCTGACCTACCTTCTTCACT+TGG 0.366149 3_4:-34492888 Msa0498370:five_prime_UTR
CCTTCATGTAGTAACGATTC+TGG 0.376618 3_4:-34489864 Msa0498370:CDS
TTGAATGGTTGGACATTAGT+TGG 0.377570 3_4:+34489792 None:intergenic
TGTTATTTGGATACACAAAC+TGG 0.390899 3_4:+34489055 None:intergenic
CCTCCGCCGCCGTGCCGTCT+CGG 0.397513 3_4:-34492711 Msa0498370:CDS
CCGAGACGGCACGGCGGCGG+AGG 0.397598 3_4:+34492711 None:intergenic
TCCCTTCAGATATCTTCATT+GGG 0.406133 3_4:+34489112 None:intergenic
TGGGTTAAATATTGGGCATT+GGG 0.410553 3_4:-34487825 Msa0498370:three_prime_UTR
CACGGCGGCGGAGGCAGCGG+CGG 0.410655 3_4:+34492720 None:intergenic
TCATTCTCATCAAAAGCAAT+TGG 0.422122 3_4:+34488089 None:intergenic
TTGGGAGTTGGCGGATTGAA+TGG 0.422674 3_4:+34489777 None:intergenic
CAAGTACCCCTACTGAAATT+CGG 0.424717 3_4:-34489914 Msa0498370:CDS
TGCAGCAACCATCCCAATGA+TGG 0.431713 3_4:+34488783 None:intergenic
TATATTTGATGAGGATTGTT+GGG 0.432129 3_4:-34487844 Msa0498370:three_prime_UTR
AAGACAATGTGCATCGTAAT+GGG 0.432569 3_4:-34491013 Msa0498370:CDS
TTGGGTTAAATATTGGGCAT+TGG 0.435150 3_4:-34487826 Msa0498370:three_prime_UTR
ATGTTCCTGCGCAAGATTCA+AGG 0.435844 3_4:-34488984 Msa0498370:CDS
AGGGATCACAGAGTGATGAT+AGG 0.453830 3_4:-34490977 Msa0498370:CDS
CCTGTCGATAGGCCCATCAT+TGG 0.456758 3_4:-34488796 Msa0498370:CDS
CCAAGCAATCAGCACTGCAT+TGG 0.458893 3_4:+34487930 None:intergenic
GTGCCGAGACGGCACGGCGG+CGG 0.460806 3_4:+34492708 None:intergenic
AGGCAGCGGCGGATTTAGCT+TGG 0.463934 3_4:+34492731 None:intergenic
CAAGCAATCAGCACTGCATT+GGG 0.465777 3_4:+34487931 None:intergenic
TTAACAGGGTAAACAGTTCC+AGG 0.469267 3_4:+34489081 None:intergenic
GAGCAAGATACTTGAGGAAG+AGG 0.471401 3_4:-34489010 Msa0498370:CDS
GAAGACAATGTGCATCGTAA+TGG 0.477516 3_4:-34491014 Msa0498370:CDS
AGAAGCCAAGAACGAAACTT+TGG 0.484007 3_4:+34489837 None:intergenic
AATATTGGGCATTGGGAGAT+CGG 0.485654 3_4:-34487818 Msa0498370:three_prime_UTR
TCCTCCAAAATAACAGATGC+AGG 0.487575 3_4:+34488865 None:intergenic
GATGGGACTGAAATGAATAA+GGG 0.488622 3_4:-34489240 Msa0498370:CDS
TCAAATATATACAATACAAG+TGG 0.489054 3_4:+34487858 None:intergenic
ACGACGCCACGGACTGTGGA+TGG 0.492778 3_4:+34488027 None:intergenic
ATGGGAATATCATGACTCTT+CGG 0.494202 3_4:-34489295 Msa0498370:CDS
CCAATGCACACAATACTCAA+TGG 0.495131 3_4:-34489314 Msa0498370:CDS
CCAAGTGAAGAAGGTAGGTC+AGG 0.497945 3_4:+34492888 None:intergenic
CAGCGGCGGATTTAGCTTGG+TGG 0.498597 3_4:+34492734 None:intergenic
GTCCATCTCATTACTCTATG+AGG 0.502624 3_4:-34487985 Msa0498370:three_prime_UTR
GCAAAGTTTCTTAAAGCTTG+TGG 0.503956 3_4:-34489945 Msa0498370:CDS
ATCTTCCTTGAATCTTGCGC+AGG 0.504663 3_4:+34488979 None:intergenic
CAATGCACACAATACTCAAT+GGG 0.505196 3_4:-34489313 Msa0498370:CDS
TTCAGTAGGGGTACTTGCTA+TGG 0.505440 3_4:+34489920 None:intergenic
CTCTTCGGAAGGAAGTGGGC+AGG 0.505993 3_4:-34489280 Msa0498370:CDS
GAAGAGGACCCAAGTGAAGA+AGG 0.507890 3_4:+34492879 None:intergenic
CCAATGATGGGCCTATCGAC+AGG 0.508176 3_4:+34488796 None:intergenic
ATATATTTGATGAGGATTGT+TGG 0.511343 3_4:-34487845 Msa0498370:three_prime_UTR
CCAATGCAGTGCTGATTGCT+TGG 0.511818 3_4:-34487930 Msa0498370:three_prime_UTR
CCATTGAGTATTGTGTGCAT+TGG 0.512181 3_4:+34489314 None:intergenic
CTTCGGAAGGAAGTGGGCAG+GGG 0.512249 3_4:-34489278 Msa0498370:CDS
TGCTCCTCCTCCTAAGTGGT+GGG 0.512880 3_4:-34488734 Msa0498370:CDS
CATGACTCTTCGGAAGGAAG+TGG 0.514139 3_4:-34489285 Msa0498370:CDS
GATGCTTTCCGAATTTCAGT+AGG 0.514555 3_4:+34489906 None:intergenic
CTGTCGATAGGCCCATCATT+GGG 0.516223 3_4:-34488795 Msa0498370:CDS
CAACACGACGCCACGGACTG+TGG 0.521235 3_4:+34488023 None:intergenic
TCTTCGGAAGGAAGTGGGCA+GGG 0.526061 3_4:-34489279 Msa0498370:CDS
TATTTCATCCTGTGAGTCAT+CGG 0.528657 3_4:-34489181 Msa0498370:CDS
ATGCTCCTCCTCCTAAGTGG+TGG 0.530708 3_4:-34488735 Msa0498370:CDS
GAGAAGAAAGAAAATGGAGA+TGG 0.532138 3_4:-34488842 Msa0498370:CDS
TTAAAGATTAATAACCTGCT+AGG 0.536769 3_4:+34489705 None:intergenic
AGTGAATCTACCGTGGAAGA+AGG 0.537717 3_4:-34488907 Msa0498370:CDS
TCTACTTTGTTTCTGACCGA+AGG 0.540444 3_4:-34491150 Msa0498370:intron
GTTCACAGGAAAGATATTTG+CGG 0.540461 3_4:-34488116 Msa0498370:intron
CTTATTCATTTCAGTCCCAT+CGG 0.540593 3_4:+34489242 None:intergenic
CTGACCTACCTTCTTCACTT+GGG 0.541465 3_4:-34492887 Msa0498370:five_prime_UTR
GAGTTGGCGGATTGAATGGT+TGG 0.541865 3_4:+34489781 None:intergenic
GTTCAGACCACACACCTAGC+AGG 0.546465 3_4:-34489719 Msa0498370:intron
TCAGATATCTTCATTGGGGT+AGG 0.551648 3_4:+34489117 None:intergenic
TTCATTTCAGTCCCATCGGT+CGG 0.552448 3_4:+34489246 None:intergenic
ATGCTTTCCGAATTTCAGTA+GGG 0.554306 3_4:+34489907 None:intergenic
GGGAGCTATCATCCGACCGA+TGG 0.556557 3_4:-34489258 Msa0498370:CDS
ACATTACATTGGCTTTGTTG+TGG 0.556918 3_4:+34492686 None:intergenic
GAACACGAAAGCAAGTGAAA+AGG 0.559259 3_4:+34492770 None:intergenic
TTCAGGACCAGAAAGTGAGC+TGG 0.559748 3_4:-34488590 Msa0498370:intron
ACCATAAGCCGATGACTCAC+AGG 0.559884 3_4:+34489173 None:intergenic
CCATTGCCATCCCACCACTT+AGG 0.560739 3_4:+34488724 None:intergenic
CCTCCTCCTAAGTGGTGGGA+TGG 0.560739 3_4:-34488730 Msa0498370:CDS
TCTGAAGGGATGCAAACTCC+TGG 0.562862 3_4:-34489099 Msa0498370:CDS
GTTGTGGTGCCGAGACGGCA+CGG 0.566404 3_4:+34492702 None:intergenic
TCAGAAACAAAGTAGACAAA+CGG 0.567517 3_4:+34491157 None:intergenic
TGTATTGTATATATTTGATG+AGG 0.567911 3_4:-34487853 Msa0498370:three_prime_UTR
CGACGCCACGGACTGTGGAT+GGG 0.567931 3_4:+34488028 None:intergenic
CCTAAGTGGTGGGATGGCAA+TGG 0.569676 3_4:-34488724 Msa0498370:CDS
GTGTATCCAAATAACAGCCT+AGG 0.571499 3_4:-34489048 Msa0498370:CDS
ATGCTACGCCGTTCGAAGAG+AGG 0.575521 3_4:-34488566 Msa0498370:CDS
CAAATATATACAATACAAGT+GGG 0.576971 3_4:+34487859 None:intergenic
ACCCCAATGAAGATATCTGA+AGG 0.577653 3_4:-34489114 Msa0498370:CDS
CCATCCCACCACTTAGGAGG+AGG 0.578549 3_4:+34488730 None:intergenic
AGTATCACATTCAAAACGTA+CGG 0.579270 3_4:+34489206 None:intergenic
TTGGGATGGTTGCTGCACAT+TGG 0.584288 3_4:-34488777 Msa0498370:CDS
GGAGCTATCATCCGACCGAT+GGG 0.587580 3_4:-34489257 Msa0498370:CDS
GGCGTCGTGTTGATATCTAT+AGG 0.588523 3_4:-34488012 Msa0498370:exon
GTTCGAAGAGAGGTTGGAGA+AGG 0.592220 3_4:-34488556 Msa0498370:CDS
CGATAGGCCCATCATTGGGA+TGG 0.592976 3_4:-34488791 Msa0498370:CDS
AGCCAAGAACGAAACTTTGG+AGG 0.594708 3_4:+34489840 None:intergenic
TAGATATCAACACGACGCCA+CGG 0.596729 3_4:+34488016 None:intergenic
AGAAGAGCATATCATTGAAG+AGG 0.597460 3_4:+34492863 None:intergenic
TACTGAAATTCGGAAAGCAT+CGG 0.598546 3_4:-34489904 Msa0498370:CDS
TTCTCCAACCTCTCTTCGAA+CGG 0.599277 3_4:+34488558 None:intergenic
TACCTCATAGAGTAATGAGA+TGG 0.599918 3_4:+34487983 None:intergenic
AGTCATCGGCTTATGGTGGA+TGG 0.599998 3_4:-34489167 Msa0498370:CDS
GCAGCAACCATCCCAATGAT+GGG 0.601660 3_4:+34488784 None:intergenic
CTGATGCTCCTCCTCCTAAG+TGG 0.601801 3_4:-34488738 Msa0498370:CDS
TCCAAATAACAGCCTAGGTG+AGG 0.601979 3_4:-34489043 Msa0498370:CDS
CTCTAAGAGCAAGATACTTG+AGG 0.603618 3_4:-34489016 Msa0498370:CDS
TTGCCATCCCACCACTTAGG+AGG 0.606952 3_4:+34488727 None:intergenic
TACGCCGTTCGAAGAGAGGT+TGG 0.606989 3_4:-34488562 Msa0498370:CDS
GCTTTGTTGTGGTGCCGAGA+CGG 0.608775 3_4:+34492697 None:intergenic
AGGACCCAAGTGAAGAAGGT+AGG 0.610700 3_4:+34492883 None:intergenic
CCCTTCAGATATCTTCATTG+GGG 0.615934 3_4:+34489113 None:intergenic
CCAGAATCGTTACTACATGA+AGG 0.617304 3_4:+34489864 None:intergenic
ATGACTCTTCGGAAGGAAGT+GGG 0.617710 3_4:-34489284 Msa0498370:CDS
TGCTTTCCGAATTTCAGTAG+GGG 0.618402 3_4:+34489908 None:intergenic
AGGATACTATCATCGCTCAA+AGG 0.620789 3_4:-34488524 Msa0498370:intron
CCCGCAAAACTCCTGTCGAT+AGG 0.624406 3_4:-34488807 Msa0498370:CDS
AGAAGACAAGCCTTCTTCCA+CGG 0.626278 3_4:+34488897 None:intergenic
TTCATCCCATCCACAGTCCG+TGG 0.627583 3_4:-34488033 Msa0498370:CDS
CCCCAATGAAGATATCTGAA+GGG 0.632021 3_4:-34489113 Msa0498370:CDS
GAATATCATGACTCTTCGGA+AGG 0.632054 3_4:-34489291 Msa0498370:CDS
CTTTGTAAAGCAGGATGATG+TGG 0.633113 3_4:-34491190 Msa0498370:intron
TGCTGCACATTGGATTGAAG+AGG 0.634738 3_4:-34488767 Msa0498370:CDS
ACACAAACTGGGACTTAACA+GGG 0.635382 3_4:+34489067 None:intergenic
TGTGAGTCATCGGCTTATGG+TGG 0.636034 3_4:-34489171 Msa0498370:CDS
TTAATAACCTGCTAGGTGTG+TGG 0.641765 3_4:+34489712 None:intergenic
GTTGGAGAAGGCATTATCTG+AGG 0.647231 3_4:-34488544 Msa0498370:CDS
ATGGGACTGAAATGAATAAG+GGG 0.654668 3_4:-34489239 Msa0498370:CDS
GTTATTTGGATACACAAACT+GGG 0.662575 3_4:+34489056 None:intergenic
AGATAAAAGTGAATCTACCG+TGG 0.669633 3_4:-34488914 Msa0498370:CDS
TCTTAGAGACATCCTCACCT+AGG 0.675023 3_4:+34489031 None:intergenic
TGATAGGCAGCTTAAAGACG+AGG 0.694138 3_4:-34490961 Msa0498370:intron
GGACTGAAATGAATAAGGGG+AGG 0.697836 3_4:-34489236 Msa0498370:CDS
GTGGTGCCGAGACGGCACGG+CGG 0.818841 3_4:+34492705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTTTTGAATTTGAATA+TGG + chr3_4:34487850-34487869 None:intergenic 15.0%
!! AAACTTAATTCAATAATCAT+AGG + chr3_4:34488271-34488290 None:intergenic 15.0%
!! AAAAAATTGTTAAATAGGAA+TGG - chr3_4:34488412-34488431 Msa0498370:intron 15.0%
!! AAAAATTGTTAAATAGGAAT+GGG - chr3_4:34488413-34488432 Msa0498370:intron 15.0%
!!! GATTAATTTTATCGATTTAA+AGG - chr3_4:34488508-34488527 Msa0498370:intron 15.0%
!! TTCAAAAAAAAAAATTAAGC+TGG - chr3_4:34488672-34488691 Msa0498370:intron 15.0%
!!! TTTTTTTTTTTTTTCCTGTT+TGG - chr3_4:34488704-34488723 Msa0498370:CDS 15.0%
!!! TTTTTTTTTTTTTCCTGTTT+GGG - chr3_4:34488705-34488724 Msa0498370:CDS 15.0%
!!! ATTTTAGGTTTTTTTTTTGT+TGG - chr3_4:34488765-34488784 Msa0498370:CDS 15.0%
!!! TAGTGTTTGAAATTTTATTT+AGG - chr3_4:34489261-34489280 Msa0498370:CDS 15.0%
!!! AAAGTATTTAATAGTTTTCA+TGG - chr3_4:34489422-34489441 Msa0498370:intron 15.0%
!!! AAGTATTTAATAGTTTTCAT+GGG - chr3_4:34489423-34489442 Msa0498370:intron 15.0%
!!! TTAACCTTTTTTTTTTTGAA+AGG - chr3_4:34491123-34491142 Msa0498370:intron 15.0%
!! TGAAAAGGTTATATTTAATA+TGG + chr3_4:34491439-34491458 None:intergenic 15.0%
!! TAATGAATTGAAAAATGGAT+CGG + chr3_4:34488012-34488031 None:intergenic 20.0%
!!! ATCCATTTTTCAATTCATTA+TGG - chr3_4:34488012-34488031 Msa0498370:exon 20.0%
!!! TCCATTTTTCAATTCATTAT+GGG - chr3_4:34488013-34488032 Msa0498370:exon 20.0%
!! TACAAAAAATCAACAAGAAA+CGG + chr3_4:34488168-34488187 None:intergenic 20.0%
!! TGTGGAAAAAATTGTTAAAT+AGG - chr3_4:34488407-34488426 Msa0498370:intron 20.0%
!! ATGAAATTGTGAAATGATAA+TGG - chr3_4:34488534-34488553 Msa0498370:CDS 20.0%
!!! AAATGTTAGTTTAATTAAGC+TGG - chr3_4:34488456-34488475 Msa0498370:intron 20.0%
!!! TTTTTTGAAGAACCTAAATT+CGG + chr3_4:34488661-34488680 None:intergenic 20.0%
!! AAAAAAAATTAAGCTGGATT+TGG - chr3_4:34488678-34488697 Msa0498370:intron 20.0%
!!! GAAATTTGTTTATGAAATGA+TGG - chr3_4:34488790-34488809 Msa0498370:CDS 20.0%
!!! TAGGTTTGTTATTGATTTAA+AGG - chr3_4:34488968-34488987 Msa0498370:CDS 20.0%
!!! GTTATTGATTTAAAGGATTA+TGG - chr3_4:34488975-34488994 Msa0498370:CDS 20.0%
!!! TAGCTTTGTTATTGATTTAA+TGG - chr3_4:34489179-34489198 Msa0498370:CDS 20.0%
!! TAGCAAAATAAATTTACCTT+CGG + chr3_4:34489678-34489697 None:intergenic 20.0%
!!! TCTCTTTACTTTTTTAATGA+AGG - chr3_4:34490439-34490458 Msa0498370:intron 20.0%
!!! TTTAGATAATTGAGTTTTTG+AGG + chr3_4:34490597-34490616 None:intergenic 20.0%
!! AATAGACAAATGACTTAAAA+AGG + chr3_4:34490776-34490795 None:intergenic 20.0%
!!! TTAAGTTTGTTTACATGATT+TGG - chr3_4:34490827-34490846 Msa0498370:intron 20.0%
!! ATTGCCTTTCAAAAAAAAAA+AGG + chr3_4:34491130-34491149 None:intergenic 20.0%
!!! AAAATTGGTGTTTTAGAAAA+TGG - chr3_4:34491328-34491347 Msa0498370:intron 20.0%
!!! TTTCCCTTTTAGATTTTTTA+AGG - chr3_4:34491370-34491389 Msa0498370:intron 20.0%
!!! TTCCCTTTTAGATTTTTTAA+GGG - chr3_4:34491371-34491390 Msa0498370:intron 20.0%
!!! AAAGAAATTAACTTCTGAAA+AGG + chr3_4:34491454-34491473 None:intergenic 20.0%
!!! AATATCGTTTTAACTTTCAA+AGG + chr3_4:34492354-34492373 None:intergenic 20.0%
!! CAAATATATACAATACAAGT+GGG + chr3_4:34492953-34492972 None:intergenic 20.0%
!! TCAAATATATACAATACAAG+TGG + chr3_4:34492954-34492973 None:intergenic 20.0%
!! TGTATTGTATATATTTGATG+AGG - chr3_4:34492956-34492975 Msa0498370:five_prime_UTR 20.0%
! ACCCATAATGAATTGAAAAA+TGG + chr3_4:34488017-34488036 None:intergenic 25.0%
! GATTATGAGTTACATTACAT+TGG + chr3_4:34488137-34488156 None:intergenic 25.0%
!! AATTCCAAGAATTTTTGTTG+TGG - chr3_4:34488389-34488408 Msa0498370:intron 25.0%
!! TTTTCCACAACAAAAATTCT+TGG + chr3_4:34488396-34488415 None:intergenic 25.0%
! AGTTTAATTAAGCTGGAATT+TGG - chr3_4:34488567-34488586 Msa0498370:CDS 25.0%
! GTTTAATTAAGCTGGAATTT+GGG - chr3_4:34488568-34488587 Msa0498370:CDS 25.0%
!!! GTTCTGGTTTTTGATATTTT+AGG - chr3_4:34488750-34488769 Msa0498370:CDS 25.0%
! CTTGAAATGATAGCTTAATT+TGG - chr3_4:34488877-34488896 Msa0498370:CDS 25.0%
!! TTTTTGGATTTTGTGTGTTT+AGG - chr3_4:34488949-34488968 Msa0498370:CDS 25.0%
! TATGGAATGTAATGTAATGA+TGG - chr3_4:34488993-34489012 Msa0498370:CDS 25.0%
!!! ATTTACTGGAATTTTAGCTT+TGG - chr3_4:34489022-34489041 Msa0498370:CDS 25.0%
! GATTATGAATTGTAGATTTC+AGG - chr3_4:34489119-34489138 Msa0498370:CDS 25.0%
!!! AATGGATTATGAAATGATGA+AGG - chr3_4:34489197-34489216 Msa0498370:CDS 25.0%
!!! TTTTATTTAGGAGCTTTGTT+TGG - chr3_4:34489273-34489292 Msa0498370:CDS 25.0%
!!! GTTCTAGTTACTGAAATTTT+AGG - chr3_4:34489386-34489405 Msa0498370:intron 25.0%
!!! CTTTTACAGTTTTGATGTTA+TGG - chr3_4:34489724-34489743 Msa0498370:CDS 25.0%
!! TCTCAGTAATGTACTAATTT+TGG - chr3_4:34489749-34489768 Msa0498370:CDS 25.0%
!! CTCAGTAATGTACTAATTTT+GGG - chr3_4:34489750-34489769 Msa0498370:CDS 25.0%
!! TCAGTAATGTACTAATTTTG+GGG - chr3_4:34489751-34489770 Msa0498370:CDS 25.0%
!!! GGGTTTAAATTTTGAAAAGA+GGG - chr3_4:34489771-34489790 Msa0498370:CDS 25.0%
! GAAAGATAAAAAATAGCTTC+CGG + chr3_4:34490116-34490135 None:intergenic 25.0%
! AATGTTACCGTTTATGTTTA+TGG - chr3_4:34490212-34490231 Msa0498370:intron 25.0%
!! TGCTTTAACTTAGTTAATGT+AGG - chr3_4:34490273-34490292 Msa0498370:intron 25.0%
! TAATGAAGGTAGAAATTATC+TGG - chr3_4:34490453-34490472 Msa0498370:intron 25.0%
! GACATACTATATAGATATAC+AGG + chr3_4:34490521-34490540 None:intergenic 25.0%
!!! CATTCTTCACATTGTTTTTT+GGG + chr3_4:34491053-34491072 None:intergenic 25.0%
! CAAAAAACAATGTGAAGAAT+GGG - chr3_4:34491052-34491071 Msa0498370:intron 25.0%
! TTAAAGATTAATAACCTGCT+AGG + chr3_4:34491107-34491126 None:intergenic 25.0%
! TGCCCTTAAAAAATCTAAAA+GGG + chr3_4:34491376-34491395 None:intergenic 25.0%
! ATGCCCTTAAAAAATCTAAA+AGG + chr3_4:34491377-34491396 None:intergenic 25.0%
!!! TTTTTTAAGGGCATATCTTA+TGG - chr3_4:34491383-34491402 Msa0498370:intron 25.0%
!!! TTTTTAAGGGCATATCTTAT+GGG - chr3_4:34491384-34491403 Msa0498370:intron 25.0%
!! TTGTATTTGTTGGTTGAATT+TGG + chr3_4:34492115-34492134 None:intergenic 25.0%
! TCATACTTCTTTGTATTTGT+TGG + chr3_4:34492125-34492144 None:intergenic 25.0%
! GAAAACAATCAGCATTAATT+AGG + chr3_4:34492202-34492221 None:intergenic 25.0%
!!! AATTAATGCTGATTGTTTTC+AGG - chr3_4:34492202-34492221 Msa0498370:intron 25.0%
! TGGTAAATTGCTTATGTATA+TGG + chr3_4:34492522-34492541 None:intergenic 25.0%
!!! TGTCTTTTTGATTTGTGATT+TGG - chr3_4:34492671-34492690 Msa0498370:intron 25.0%
! ATATATTTGATGAGGATTGT+TGG - chr3_4:34492964-34492983 Msa0498370:five_prime_UTR 25.0%
! TATATTTGATGAGGATTGTT+GGG - chr3_4:34492965-34492984 Msa0498370:five_prime_UTR 25.0%
TTGTTAAATAGGAATGGGAA+TGG - chr3_4:34488418-34488437 Msa0498370:intron 30.0%
TGTTAAATAGGAATGGGAAT+GGG - chr3_4:34488419-34488438 Msa0498370:intron 30.0%
!! GATGATGAATTTGTTGATTG+CGG - chr3_4:34488727-34488746 Msa0498370:CDS 30.0%
!! ATGATGAATTTGTTGATTGC+GGG - chr3_4:34488728-34488747 Msa0498370:CDS 30.0%
!!! ATGTTCGTTGTTGTTGTTTT+TGG - chr3_4:34488933-34488952 Msa0498370:CDS 30.0%
!! AATGATGGATGATGATTTAC+TGG - chr3_4:34489008-34489027 Msa0498370:CDS 30.0%
GAGAAATTGTGAAATGAGAA+TGG - chr3_4:34489044-34489063 Msa0498370:CDS 30.0%
AATGAGAATGGTTGAAATGT+TGG - chr3_4:34489056-34489075 Msa0498370:CDS 30.0%
!!! TTCTGGTTTCTGAAGTTTTA+TGG - chr3_4:34489142-34489161 Msa0498370:CDS 30.0%
! TTGGTAGCTAAAATGTTGAA+TGG - chr3_4:34489292-34489311 Msa0498370:CDS 30.0%
AAATTCATCATCTCAAGAAG+GGG + chr3_4:34489355-34489374 None:intergenic 30.0%
CAAATTCATCATCTCAAGAA+GGG + chr3_4:34489356-34489375 None:intergenic 30.0%
ACAAATTCATCATCTCAAGA+AGG + chr3_4:34489357-34489376 None:intergenic 30.0%
!!! TTTTGACTTTTTGATGTGAC+TGG - chr3_4:34489584-34489603 Msa0498370:intron 30.0%
TCAGAAACAAAGTAGACAAA+CGG + chr3_4:34489655-34489674 None:intergenic 30.0%
!! GGGGTTTAAATTTTGAAAAG+AGG - chr3_4:34489770-34489789 Msa0498370:CDS 30.0%
TGTAATGTGTATTCGCAATT+CGG - chr3_4:34489962-34489981 Msa0498370:intron 30.0%
! AGAACTCTACTTGATAGTAT+TGG - chr3_4:34490044-34490063 Msa0498370:intron 30.0%
TCAATTCAATACTTGAGAGT+TGG + chr3_4:34490147-34490166 None:intergenic 30.0%
! CTTTAGTTTCTGTTTAAGTG+AGG - chr3_4:34490182-34490201 Msa0498370:intron 30.0%
CTGTCTACCATAAACATAAA+CGG + chr3_4:34490222-34490241 None:intergenic 30.0%
ATACAATGTAGTGAGTATCA+AGG + chr3_4:34490339-34490358 None:intergenic 30.0%
!! CATTGTATTTTTCGATCTCA+AGG - chr3_4:34490351-34490370 Msa0498370:intron 30.0%
CTTACAGATAAATGCACAAT+TGG - chr3_4:34490391-34490410 Msa0498370:intron 30.0%
AAGAGATTGCAGTTAAGTTA+TGG + chr3_4:34490425-34490444 None:intergenic 30.0%
! TAAAATAGCTGATGTTTTGC+TGG - chr3_4:34490620-34490639 Msa0498370:intron 30.0%
!!! GACTTAAAAAGGTGTTTTTG+AGG + chr3_4:34490765-34490784 None:intergenic 30.0%
!!! TGATTTGGTAAACATTTTGC+AGG - chr3_4:34490842-34490861 Msa0498370:intron 30.0%
!!! CCATTCTTCACATTGTTTTT+TGG + chr3_4:34491054-34491073 None:intergenic 30.0%
CCAAAAAACAATGTGAAGAA+TGG - chr3_4:34491051-34491070 Msa0498370:intron 30.0%
GTACATTACATGCATTAAAC+AGG + chr3_4:34491159-34491178 None:intergenic 30.0%
AACAACCACACAATCAATTT+CGG - chr3_4:34491196-34491215 Msa0498370:intron 30.0%
TAAGCCTTTCTTATACAAGA+TGG + chr3_4:34491258-34491277 None:intergenic 30.0%
TCTTGTATAAGAAAGGCTTA+AGG - chr3_4:34491258-34491277 Msa0498370:intron 30.0%
AATGTGTTCCTCTTCAAAAT+TGG - chr3_4:34491313-34491332 Msa0498370:intron 30.0%
!! CTAAAACACCAATTTTGAAG+AGG + chr3_4:34491324-34491343 None:intergenic 30.0%
!! TTTTAAGGGCATATCTTATG+GGG - chr3_4:34491385-34491404 Msa0498370:intron 30.0%
AGTATCACATTCAAAACGTA+CGG + chr3_4:34491606-34491625 None:intergenic 30.0%
GTTATTTGGATACACAAACT+GGG + chr3_4:34491756-34491775 None:intergenic 30.0%
! TGTTATTTGGATACACAAAC+TGG + chr3_4:34491757-34491776 None:intergenic 30.0%
! ATACAAAGAAGTATGATCCT+TGG - chr3_4:34492129-34492148 Msa0498370:intron 30.0%
AGACTTCTAATTCTTTCACA+TGG + chr3_4:34492165-34492184 None:intergenic 30.0%
AGGAATTCAACGATACATAA+AGG + chr3_4:34492446-34492465 None:intergenic 30.0%
AGAAACCTGTATGATTTAGT+GGG + chr3_4:34492643-34492662 None:intergenic 30.0%
TCATTCTCATCAAAAGCAAT+TGG + chr3_4:34492723-34492742 None:intergenic 30.0%
AGGATTGTTGGGTTAAATAT+TGG - chr3_4:34492976-34492995 Msa0498370:five_prime_UTR 30.0%
GGATTGTTGGGTTAAATATT+GGG - chr3_4:34492977-34492996 Msa0498370:five_prime_UTR 30.0%
! AGAAGAGCATATCATTGAAG+AGG + chr3_4:34487949-34487968 None:intergenic 35.0%
TCTTCAATGATATGCTCTTC+TGG - chr3_4:34487948-34487967 Msa0498370:three_prime_UTR 35.0%
GGATCGGAAAAAAAAAACGA+AGG + chr3_4:34487996-34488015 None:intergenic 35.0%
!! ACATTACATTGGCTTTGTTG+TGG + chr3_4:34488126-34488145 None:intergenic 35.0%
AATTAAGCTGGAATTTGGGT+TGG - chr3_4:34488572-34488591 Msa0498370:CDS 35.0%
TTGAAGAACCTAAATTCGGA+CGG + chr3_4:34488657-34488676 None:intergenic 35.0%
ACAAATTCATCATCCCAAAC+AGG + chr3_4:34488721-34488740 None:intergenic 35.0%
CAACGAACATAAGAACAAAG+AGG + chr3_4:34488923-34488942 None:intergenic 35.0%
!! GAATTGTAGATTTCAGGTTC+TGG - chr3_4:34489125-34489144 Msa0498370:CDS 35.0%
!! CTTCTGGTTGCTGAAATTTT+TGG - chr3_4:34489478-34489497 Msa0498370:intron 35.0%
! GAATTTGCTCTTTGTAAAGC+AGG - chr3_4:34489610-34489629 Msa0498370:intron 35.0%
AAGACAATGTGCATCGTAAT+GGG - chr3_4:34489796-34489815 Msa0498370:CDS 35.0%
!! TCGTAATGGGAGAAATTTTG+AGG - chr3_4:34489809-34489828 Msa0498370:CDS 35.0%
!! TAATGGGAGAAATTTTGAGG+AGG - chr3_4:34489812-34489831 Msa0498370:CDS 35.0%
!! AATGGGAGAAATTTTGAGGA+GGG - chr3_4:34489813-34489832 Msa0498370:CDS 35.0%
TTCATGCATGTTTAGCTGTT+TGG - chr3_4:34489922-34489941 Msa0498370:CDS 35.0%
!! CAGTGTCTTAGTCTTATATC+AGG + chr3_4:34489998-34490017 None:intergenic 35.0%
GATATAAGACTAAGACACTG+AGG - chr3_4:34489998-34490017 Msa0498370:intron 35.0%
GGTAAGTGTTATACTAACGA+TGG + chr3_4:34490301-34490320 None:intergenic 35.0%
!! ATTTTTCGATCTCAAGGTTC+TGG - chr3_4:34490357-34490376 Msa0498370:intron 35.0%
AGAAATTATCTGGTTGTCCA+TGG - chr3_4:34490463-34490482 Msa0498370:intron 35.0%
GCAAAGTTTCTTAAAGCTTG+TGG - chr3_4:34490864-34490883 Msa0498370:intron 35.0%
ATGCTTTCCGAATTTCAGTA+GGG + chr3_4:34490905-34490924 None:intergenic 35.0%
! TACTGAAATTCGGAAAGCAT+CGG - chr3_4:34490905-34490924 Msa0498370:intron 35.0%
TTGAATGGTTGGACATTAGT+TGG + chr3_4:34491020-34491039 None:intergenic 35.0%
!!! TCACATTGTTTTTTGGGAGT+TGG + chr3_4:34491047-34491066 None:intergenic 35.0%
TCTTATTACTATTAGCGCGA+TGG - chr3_4:34491228-34491247 Msa0498370:intron 35.0%
CTTATTACTATTAGCGCGAT+GGG - chr3_4:34491229-34491248 Msa0498370:intron 35.0%
GACACCATCTTGTATAAGAA+AGG - chr3_4:34491251-34491270 Msa0498370:intron 35.0%
! GAAGAGGAACACATTTTCTT+AGG + chr3_4:34491308-34491327 None:intergenic 35.0%
CAATGCACACAATACTCAAT+GGG - chr3_4:34491496-34491515 Msa0498370:intron 35.0%
ATGGGAATATCATGACTCTT+CGG - chr3_4:34491514-34491533 Msa0498370:intron 35.0%
CTTATTCATTTCAGTCCCAT+CGG + chr3_4:34491570-34491589 None:intergenic 35.0%
GATGGGACTGAAATGAATAA+GGG - chr3_4:34491569-34491588 Msa0498370:intron 35.0%
ATGGGACTGAAATGAATAAG+GGG - chr3_4:34491570-34491589 Msa0498370:intron 35.0%
TATTTCATCCTGTGAGTCAT+CGG - chr3_4:34491628-34491647 Msa0498370:intron 35.0%
TCCCTTCAGATATCTTCATT+GGG + chr3_4:34491700-34491719 None:intergenic 35.0%
ATCCCTTCAGATATCTTCAT+TGG + chr3_4:34491701-34491720 None:intergenic 35.0%
!! ACGGTAGATTCACTTTTATC+TGG + chr3_4:34491896-34491915 None:intergenic 35.0%
AGATAAAAGTGAATCTACCG+TGG - chr3_4:34491895-34491914 Msa0498370:intron 35.0%
GAGAAGAAAGAAAATGGAGA+TGG - chr3_4:34491967-34491986 Msa0498370:intron 35.0%
AGAAGTTTGTACTTCTGATG+CGG - chr3_4:34492375-34492394 Msa0498370:intron 35.0%
! GTAAGTGGTCTTTTGTCAAA+TGG + chr3_4:34492542-34492561 None:intergenic 35.0%
GCACTCAATACAAAAGTAAG+TGG + chr3_4:34492557-34492576 None:intergenic 35.0%
!! AGTCTCGCGATTTTGATAAT+TGG - chr3_4:34492616-34492635 Msa0498370:intron 35.0%
GAGAAACCTGTATGATTTAG+TGG + chr3_4:34492644-34492663 None:intergenic 35.0%
!! TGATTTGTGATTTGGTTCAC+AGG - chr3_4:34492679-34492698 Msa0498370:intron 35.0%
GTTCACAGGAAAGATATTTG+CGG - chr3_4:34492693-34492712 Msa0498370:CDS 35.0%
TACCTCATAGAGTAATGAGA+TGG + chr3_4:34492829-34492848 None:intergenic 35.0%
TTGGGTTAAATATTGGGCAT+TGG - chr3_4:34492983-34493002 Msa0498370:five_prime_UTR 35.0%
TGGGTTAAATATTGGGCATT+GGG - chr3_4:34492984-34493003 Msa0498370:five_prime_UTR 35.0%
GAACACGAAAGCAAGTGAAA+AGG + chr3_4:34488042-34488061 None:intergenic 40.0%
!! TATGAAGCACTGACACTTCT+TGG - chr3_4:34488201-34488220 Msa0498370:intron 40.0%
CACTGACACTTCTTGGATTA+GGG - chr3_4:34488208-34488227 Msa0498370:intron 40.0%
! ACTGACACTTCTTGGATTAG+GGG - chr3_4:34488209-34488228 Msa0498370:intron 40.0%
AATAGGAATGGGAATGGGAA+TGG - chr3_4:34488424-34488443 Msa0498370:intron 40.0%
GAATGGATCCTAAAACCTTG+AGG + chr3_4:34488631-34488650 None:intergenic 40.0%
TGAAGAACCTAAATTCGGAC+GGG + chr3_4:34488656-34488675 None:intergenic 40.0%
!! AATTTGTTGATTGCGGGTTC+TGG - chr3_4:34488734-34488753 Msa0498370:CDS 40.0%
GTGAAATACTGAAATGCGAG+TGG - chr3_4:34488848-34488867 Msa0498370:CDS 40.0%
ATGGTTGAGATGATCGCTTT+CGG - chr3_4:34489311-34489330 Msa0498370:CDS 40.0%
TTCTGAGTATGTTCTGCTTC+TGG - chr3_4:34489462-34489481 Msa0498370:intron 40.0%
CTTTGTAAAGCAGGATGATG+TGG - chr3_4:34489619-34489638 Msa0498370:intron 40.0%
!! TCTACTTTGTTTCTGACCGA+AGG - chr3_4:34489659-34489678 Msa0498370:intron 40.0%
GAAGACAATGTGCATCGTAA+TGG - chr3_4:34489795-34489814 Msa0498370:CDS 40.0%
ATGCATGTTTAGCTGTTTGG+AGG - chr3_4:34489925-34489944 Msa0498370:CDS 40.0%
GTCTTATATCAGGAGCGAAA+TGG + chr3_4:34489988-34490007 None:intergenic 40.0%
CGAAGATGTCTCATTGAGAA+TGG - chr3_4:34490078-34490097 Msa0498370:intron 40.0%
AGAATGGCCAGAATTATGAC+CGG - chr3_4:34490094-34490113 Msa0498370:intron 40.0%
ATAGCTTCCGGTCATAATTC+TGG + chr3_4:34490104-34490123 None:intergenic 40.0%
! CATTGAAGAAGTAAGCACTG+TGG + chr3_4:34490245-34490264 None:intergenic 40.0%
TCAAGGCTTTCTTAGTATCG+TGG + chr3_4:34490322-34490341 None:intergenic 40.0%
ATACACCACAAATCTTAGCC+AGG + chr3_4:34490495-34490514 None:intergenic 40.0%
TACAAGCATATGCATGTCCT+GGG - chr3_4:34490548-34490567 Msa0498370:intron 40.0%
! AATAGCTGATGTTTTGCTGG+TGG - chr3_4:34490623-34490642 Msa0498370:intron 40.0%
CAAGTACCCCTACTGAAATT+CGG - chr3_4:34490895-34490914 Msa0498370:intron 40.0%
TGCTTTCCGAATTTCAGTAG+GGG + chr3_4:34490904-34490923 None:intergenic 40.0%
GATGCTTTCCGAATTTCAGT+AGG + chr3_4:34490906-34490925 None:intergenic 40.0%
CCAGAATCGTTACTACATGA+AGG + chr3_4:34490948-34490967 None:intergenic 40.0%
CCTTCATGTAGTAACGATTC+TGG - chr3_4:34490945-34490964 Msa0498370:intron 40.0%
AGAAGCCAAGAACGAAACTT+TGG + chr3_4:34490975-34490994 None:intergenic 40.0%
!!! CATTGTTTTTTGGGAGTTGG+CGG + chr3_4:34491044-34491063 None:intergenic 40.0%
TTAATAACCTGCTAGGTGTG+TGG + chr3_4:34491100-34491119 None:intergenic 40.0%
AACCACACAATCAATTTCGG+TGG - chr3_4:34491199-34491218 Msa0498370:intron 40.0%
ATCCACCGAAATTGATTGTG+TGG + chr3_4:34491204-34491223 None:intergenic 40.0%
! CCATTGAGTATTGTGTGCAT+TGG + chr3_4:34491498-34491517 None:intergenic 40.0%
CCAATGCACACAATACTCAA+TGG - chr3_4:34491495-34491514 Msa0498370:intron 40.0%
GAATATCATGACTCTTCGGA+AGG - chr3_4:34491518-34491537 Msa0498370:intron 40.0%
CGATGGGACTGAAATGAATA+AGG - chr3_4:34491568-34491587 Msa0498370:intron 40.0%
ATCTTCATTGGGGTAGGATT+TGG + chr3_4:34491689-34491708 None:intergenic 40.0%
TCAGATATCTTCATTGGGGT+AGG + chr3_4:34491695-34491714 None:intergenic 40.0%
ACCCCAATGAAGATATCTGA+AGG - chr3_4:34491695-34491714 Msa0498370:intron 40.0%
CCCTTCAGATATCTTCATTG+GGG + chr3_4:34491699-34491718 None:intergenic 40.0%
CCCCAATGAAGATATCTGAA+GGG - chr3_4:34491696-34491715 Msa0498370:intron 40.0%
TTAACAGGGTAAACAGTTCC+AGG + chr3_4:34491731-34491750 None:intergenic 40.0%
ACACAAACTGGGACTTAACA+GGG + chr3_4:34491745-34491764 None:intergenic 40.0%
TACACAAACTGGGACTTAAC+AGG + chr3_4:34491746-34491765 None:intergenic 40.0%
GTGTATCCAAATAACAGCCT+AGG - chr3_4:34491761-34491780 Msa0498370:intron 40.0%
! CTCTAAGAGCAAGATACTTG+AGG - chr3_4:34491793-34491812 Msa0498370:intron 40.0%
!! GAAGCCTGCATCTGTTATTT+TGG - chr3_4:34491940-34491959 Msa0498370:intron 40.0%
TCCTCCAAAATAACAGATGC+AGG + chr3_4:34491947-34491966 None:intergenic 40.0%
GGAGGAGAGAAGAAAGAAAA+TGG - chr3_4:34491961-34491980 Msa0498370:intron 40.0%
CACATGGAAAATAGCTACCA+AGG + chr3_4:34492149-34492168 None:intergenic 40.0%
AGGATACTATCATCGCTCAA+AGG - chr3_4:34492285-34492304 Msa0498370:intron 40.0%
GCAAACAACAGTGCTTTCAT+AGG + chr3_4:34492315-34492334 None:intergenic 40.0%
TTCAACGTCATGCTAAACTC+AGG + chr3_4:34492466-34492485 None:intergenic 40.0%
TTGGTCCCACTAAATCATAC+AGG - chr3_4:34492635-34492654 Msa0498370:intron 40.0%
GTCCATCTCATTACTCTATG+AGG - chr3_4:34492824-34492843 Msa0498370:CDS 40.0%
!! AATATTGGGCATTGGGAGAT+CGG - chr3_4:34492991-34493010 Msa0498370:five_prime_UTR 40.0%
CTGACCTACCTTCTTCACTT+GGG - chr3_4:34487922-34487941 Msa0498370:three_prime_UTR 45.0%
! GCACTGACACTTCTTGGATT+AGG - chr3_4:34488207-34488226 Msa0498370:intron 45.0%
CAAAGTCACACACACTGACA+CGG + chr3_4:34488341-34488360 None:intergenic 45.0%
!! TAAGCTGGAATTTGGGTTGG+TGG - chr3_4:34488575-34488594 Msa0498370:CDS 45.0%
!! GGAATTTGGGTTGGTGGTAT+TGG - chr3_4:34488581-34488600 Msa0498370:CDS 45.0%
TGGATCCTAAAACCTTGAGG+AGG + chr3_4:34488628-34488647 None:intergenic 45.0%
GAAGAACCTAAATTCGGACG+GGG + chr3_4:34488655-34488674 None:intergenic 45.0%
AGGGATCACAGAGTGATGAT+AGG - chr3_4:34489832-34489851 Msa0498370:CDS 45.0%
TGATAGGCAGCTTAAAGACG+AGG - chr3_4:34489848-34489867 Msa0498370:CDS 45.0%
! ATCTCAAGGTTCTGGCAGTA+GGG - chr3_4:34490365-34490384 Msa0498370:intron 45.0%
GCATTCCTGGCTAAGATTTG+TGG - chr3_4:34490487-34490506 Msa0498370:intron 45.0%
CTACAAGCATATGCATGTCC+TGG - chr3_4:34490547-34490566 Msa0498370:intron 45.0%
!! TTCAGTAGGGGTACTTGCTA+TGG + chr3_4:34490892-34490911 None:intergenic 45.0%
GTCCTCCAAAGTTTCGTTCT+TGG - chr3_4:34490967-34490986 Msa0498370:CDS 45.0%
AGCCAAGAACGAAACTTTGG+AGG + chr3_4:34490972-34490991 None:intergenic 45.0%
ATGACTCTTCGGAAGGAAGT+GGG - chr3_4:34491525-34491544 Msa0498370:intron 45.0%
TTCATTTCAGTCCCATCGGT+CGG + chr3_4:34491566-34491585 None:intergenic 45.0%
GGACTGAAATGAATAAGGGG+AGG - chr3_4:34491573-34491592 Msa0498370:intron 45.0%
TCCAAATAACAGCCTAGGTG+AGG - chr3_4:34491766-34491785 Msa0498370:intron 45.0%
TCCTCACCTAGGCTGTTATT+TGG + chr3_4:34491770-34491789 None:intergenic 45.0%
TCTTAGAGACATCCTCACCT+AGG + chr3_4:34491781-34491800 None:intergenic 45.0%
GAGCAAGATACTTGAGGAAG+AGG - chr3_4:34491799-34491818 Msa0498370:intron 45.0%
ATGTTCCTGCGCAAGATTCA+AGG - chr3_4:34491825-34491844 Msa0498370:intron 45.0%
ATCTTCCTTGAATCTTGCGC+AGG + chr3_4:34491833-34491852 None:intergenic 45.0%
AGTGAATCTACCGTGGAAGA+AGG - chr3_4:34491902-34491921 Msa0498370:intron 45.0%
AGAAGACAAGCCTTCTTCCA+CGG + chr3_4:34491915-34491934 None:intergenic 45.0%
TGGAAGAAGGCTTGTCTTCT+TGG - chr3_4:34491915-34491934 Msa0498370:intron 45.0%
!!! GCCTGCATCTGTTATTTTGG+AGG - chr3_4:34491943-34491962 Msa0498370:intron 45.0%
TGCTGCACATTGGATTGAAG+AGG - chr3_4:34492042-34492061 Msa0498370:intron 45.0%
TTCTCCAACCTCTCTTCGAA+CGG + chr3_4:34492254-34492273 None:intergenic 45.0%
!! GTTGGAGAAGGCATTATCTG+AGG - chr3_4:34492265-34492284 Msa0498370:intron 45.0%
TAGATATCAACACGACGCCA+CGG + chr3_4:34492796-34492815 None:intergenic 45.0%
! GGCGTCGTGTTGATATCTAT+AGG - chr3_4:34492797-34492816 Msa0498370:CDS 45.0%
AGCACTGCATTGGGACTTAA+TGG + chr3_4:34492872-34492891 None:intergenic 45.0%
CAAGCAATCAGCACTGCATT+GGG + chr3_4:34492881-34492900 None:intergenic 45.0%
CCAAGTGAAGAAGGTAGGTC+AGG + chr3_4:34487924-34487943 None:intergenic 50.0%
CCTGACCTACCTTCTTCACT+TGG - chr3_4:34487921-34487940 Msa0498370:three_prime_UTR 50.0%
AGGACCCAAGTGAAGAAGGT+AGG + chr3_4:34487929-34487948 None:intergenic 50.0%
GAAGAGGACCCAAGTGAAGA+AGG + chr3_4:34487933-34487952 None:intergenic 50.0%
!! TTGGGTTGGTGGTATTGGCT+TGG - chr3_4:34488586-34488605 Msa0498370:CDS 50.0%
!! TGGGTTGGTGGTATTGGCTT+GGG - chr3_4:34488587-34488606 Msa0498370:CDS 50.0%
! GTGCTCCTCCTCAAGGTTTT+AGG - chr3_4:34488620-34488639 Msa0498370:intron 50.0%
CTAAATTCGGACGGGGAGAA+TGG + chr3_4:34488648-34488667 None:intergenic 50.0%
CATTCTCCCCGTCCGAATTT+AGG - chr3_4:34488646-34488665 Msa0498370:intron 50.0%
! GATCTCAAGGTTCTGGCAGT+AGG - chr3_4:34490364-34490383 Msa0498370:intron 50.0%
TCTTAGCCAGGAATGCACCA+TGG + chr3_4:34490483-34490502 None:intergenic 50.0%
AAAAGTTTGTGAGCCAGCCC+AGG + chr3_4:34490568-34490587 None:intergenic 50.0%
! GCTGATGTTTTGCTGGTGGA+AGG - chr3_4:34490627-34490646 Msa0498370:intron 50.0%
!! GAGTTGGCGGATTGAATGGT+TGG + chr3_4:34491031-34491050 None:intergenic 50.0%
!! TTGGGAGTTGGCGGATTGAA+TGG + chr3_4:34491035-34491054 None:intergenic 50.0%
CATGACTCTTCGGAAGGAAG+TGG - chr3_4:34491524-34491543 Msa0498370:intron 50.0%
!! TCCTGTGAGTCATCGGCTTA+TGG - chr3_4:34491635-34491654 Msa0498370:intron 50.0%
ACCATAAGCCGATGACTCAC+AGG + chr3_4:34491639-34491658 None:intergenic 50.0%
!! TGTGAGTCATCGGCTTATGG+TGG - chr3_4:34491638-34491657 Msa0498370:intron 50.0%
!! AGTCATCGGCTTATGGTGGA+TGG - chr3_4:34491642-34491661 Msa0498370:intron 50.0%
TCTGAAGGGATGCAAACTCC+TGG - chr3_4:34491710-34491729 Msa0498370:intron 50.0%
! CCTATCGACAGGAGTTTTGC+GGG + chr3_4:34492005-34492024 None:intergenic 50.0%
! GCCTATCGACAGGAGTTTTG+CGG + chr3_4:34492006-34492025 None:intergenic 50.0%
CTGTCGATAGGCCCATCATT+GGG - chr3_4:34492014-34492033 Msa0498370:intron 50.0%
GCAGCAACCATCCCAATGAT+GGG + chr3_4:34492028-34492047 None:intergenic 50.0%
TGCAGCAACCATCCCAATGA+TGG + chr3_4:34492029-34492048 None:intergenic 50.0%
TTGGGATGGTTGCTGCACAT+TGG - chr3_4:34492032-34492051 Msa0498370:intron 50.0%
TTCAGGACCAGAAAGTGAGC+TGG - chr3_4:34492219-34492238 Msa0498370:intron 50.0%
TAGCATGCCAGCTCACTTTC+TGG + chr3_4:34492229-34492248 None:intergenic 50.0%
GTTCGAAGAGAGGTTGGAGA+AGG - chr3_4:34492253-34492272 Msa0498370:intron 50.0%
CCAAGCAATCAGCACTGCAT+TGG + chr3_4:34492882-34492901 None:intergenic 50.0%
!! CCAATGCAGTGCTGATTGCT+TGG - chr3_4:34492879-34492898 Msa0498370:five_prime_UTR 50.0%
! GCTTTGTTGTGGTGCCGAGA+CGG + chr3_4:34488115-34488134 None:intergenic 55.0%
ACTGACACGGCACACTGACA+CGG + chr3_4:34488328-34488347 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG - chr3_4:34488594-34488613 Msa0498370:intron 55.0%
GGTTGTCCATGGTGCATTCC+TGG - chr3_4:34490474-34490493 Msa0498370:intron 55.0%
AGCATATGCATGTCCTGGGC+TGG - chr3_4:34490552-34490571 Msa0498370:intron 55.0%
GTTCAGACCACACACCTAGC+AGG - chr3_4:34491090-34491109 Msa0498370:intron 55.0%
TCTTCGGAAGGAAGTGGGCA+GGG - chr3_4:34491530-34491549 Msa0498370:intron 55.0%
GGAGCTATCATCCGACCGAT+GGG - chr3_4:34491552-34491571 Msa0498370:intron 55.0%
CCCGCAAAACTCCTGTCGAT+AGG - chr3_4:34492002-34492021 Msa0498370:intron 55.0%
!! CCAATGATGGGCCTATCGAC+AGG + chr3_4:34492016-34492035 None:intergenic 55.0%
CCTGTCGATAGGCCCATCAT+TGG - chr3_4:34492013-34492032 Msa0498370:intron 55.0%
CGATAGGCCCATCATTGGGA+TGG - chr3_4:34492018-34492037 Msa0498370:intron 55.0%
CTGATGCTCCTCCTCCTAAG+TGG - chr3_4:34492071-34492090 Msa0498370:intron 55.0%
ATGCTCCTCCTCCTAAGTGG+TGG - chr3_4:34492074-34492093 Msa0498370:intron 55.0%
TGCTCCTCCTCCTAAGTGGT+GGG - chr3_4:34492075-34492094 Msa0498370:intron 55.0%
TTGCCATCCCACCACTTAGG+AGG + chr3_4:34492085-34492104 None:intergenic 55.0%
CCATTGCCATCCCACCACTT+AGG + chr3_4:34492088-34492107 None:intergenic 55.0%
! CCTAAGTGGTGGGATGGCAA+TGG - chr3_4:34492085-34492104 Msa0498370:intron 55.0%
ATGCTACGCCGTTCGAAGAG+AGG - chr3_4:34492243-34492262 Msa0498370:intron 55.0%
TACGCCGTTCGAAGAGAGGT+TGG - chr3_4:34492247-34492266 Msa0498370:intron 55.0%
TTCATCCCATCCACAGTCCG+TGG - chr3_4:34492776-34492795 Msa0498370:CDS 55.0%
!! CAGCGGCGGATTTAGCTTGG+TGG + chr3_4:34488078-34488097 None:intergenic 60.0%
! AGGCAGCGGCGGATTTAGCT+TGG + chr3_4:34488081-34488100 None:intergenic 60.0%
! GGGGTGTCTCAGTGTCAGAC+AGG - chr3_4:34488228-34488247 Msa0498370:intron 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG - chr3_4:34488593-34488612 Msa0498370:intron 60.0%
! TTGAGGAGGAGCACACTCCC+AGG + chr3_4:34488614-34488633 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - chr3_4:34488613-34488632 Msa0498370:intron 60.0%
CTCTTCGGAAGGAAGTGGGC+AGG - chr3_4:34491529-34491548 Msa0498370:intron 60.0%
CTTCGGAAGGAAGTGGGCAG+GGG - chr3_4:34491531-34491550 Msa0498370:intron 60.0%
GGGAGCTATCATCCGACCGA+TGG - chr3_4:34491551-34491570 Msa0498370:intron 60.0%
CCATCCCACCACTTAGGAGG+AGG + chr3_4:34492082-34492101 None:intergenic 60.0%
! CCTCCTCCTAAGTGGTGGGA+TGG - chr3_4:34492079-34492098 Msa0498370:intron 60.0%
! GTTGTGGTGCCGAGACGGCA+CGG + chr3_4:34488110-34488129 None:intergenic 65.0%
! CGACGCCACGGACTGTGGAT+GGG + chr3_4:34492784-34492803 None:intergenic 65.0%
! ACGACGCCACGGACTGTGGA+TGG + chr3_4:34492785-34492804 None:intergenic 65.0%
! CAACACGACGCCACGGACTG+TGG + chr3_4:34492789-34492808 None:intergenic 65.0%
! GTGGTGCCGAGACGGCACGG+CGG + chr3_4:34488107-34488126 None:intergenic 75.0%
! CCTCCGCCGCCGTGCCGTCT+CGG - chr3_4:34488098-34488117 Msa0498370:CDS 80.0%
! GTGCCGAGACGGCACGGCGG+CGG + chr3_4:34488104-34488123 None:intergenic 80.0%
! CACGGCGGCGGAGGCAGCGG+CGG + chr3_4:34488092-34488111 None:intergenic 85.0%
! CGGCACGGCGGCGGAGGCAG+CGG + chr3_4:34488095-34488114 None:intergenic 85.0%
! CCGAGACGGCACGGCGGCGG+AGG + chr3_4:34488101-34488120 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 34487817 34493014 34487817 ID=Msa0498370;Name=Msa0498370
chr3_4 mRNA 34487817 34493014 34487817 ID=Msa0498370-mRNA-1;Parent=Msa0498370;Name=Msa0498370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|7|205|466
chr3_4 exon 34487817 34488130 34487817 ID=Msa0498370-mRNA-1:exon:7325;Parent=Msa0498370-mRNA-1
chr3_4 exon 34488525 34488607 34488525 ID=Msa0498370-mRNA-1:exon:7324;Parent=Msa0498370-mRNA-1
chr3_4 exon 34488693 34489344 34488693 ID=Msa0498370-mRNA-1:exon:7323;Parent=Msa0498370-mRNA-1
chr3_4 exon 34489720 34489967 34489720 ID=Msa0498370-mRNA-1:exon:7322;Parent=Msa0498370-mRNA-1
chr3_4 exon 34490962 34491041 34490962 ID=Msa0498370-mRNA-1:exon:7321;Parent=Msa0498370-mRNA-1
chr3_4 exon 34491151 34491199 34491151 ID=Msa0498370-mRNA-1:exon:7320;Parent=Msa0498370-mRNA-1
chr3_4 exon 34492693 34493014 34492693 ID=Msa0498370-mRNA-1:exon:7319;Parent=Msa0498370-mRNA-1
chr3_4 five_prime_UTR 34492873 34493014 34492873 ID=Msa0498370-mRNA-1:five_prime_utr;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34492693 34492872 34492693 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34491151 34491199 34491151 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34490962 34491041 34490962 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34489720 34489967 34489720 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34488693 34489344 34488693 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34488525 34488607 34488525 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 CDS 34488022 34488130 34488022 ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1
chr3_4 three_prime_UTR 34487817 34488021 34487817 ID=Msa0498370-mRNA-1:three_prime_utr;Parent=Msa0498370-mRNA-1
Gene Sequence

>Msa0498370

ATGCTCTTCTGGTTAGCTTTCATTTTCATCATCACCTTCGTTTTTTTTTTCCGATCCATTTTTCAATTCATTATGGGTTGCCTTTTCACTTGCTTTCGTGTTCGTGATAACAAACGCCACCAAGCTAAATCCGCCGCTGCCTCCGCCGCCGTGCCGTCTCGGCACCACAACAAAGCCAATGATGATGTGGCGTCTCGAAACCGTTTGTCTACTTTGTTTCTGACCGAAGAGGGAGAAGACAATGTGCATCGTAATGGGAGAAATTTTGAGGAGGGATCACAGAGTGATGATAGGCAGCTTAAAGACGAGGCAAAGTTTCTTAAAGCTTGTGGTACCATAGCAAGTACCCCTACTGAAATTCGGAAAGCATCGGAGAAACTAAAAGTGTCACCTTCATGTAGTAACGATTCTGGTCCTCCAAAGTTTCGTTCTTGGCTTCTTGATACATCTGCTGAGAATGTTCCAACTAATGTCCAACCATTCAATCCGCCAACTCCCAAAAAACAATGTGAAGAATGGGAGAAAATAACAGATTGTTCAGACCACACACCTAGCAGCTGTATCTCCAATGCACACAATACTCAATGGGAATATCATGACTCTTCGGAAGGAAGTGGGCAGGGGAGCTATCATCCGACCGATGGGACTGAAATGAATAAGGGGAGGAACAAGTCCGTACGTTTTGAATGTGATACTGATATTTCATCCTGTGAGTCATCGGCTTATGGTGGATGGCGTACGAAGAAAACAGAGTCACCAAATCCTACCCCAATGAAGATATCTGAAGGGATGCAAACTCCTGGAACTGTTTACCCTGTTAAGTCCCAGTTTGTGTATCCAAATAACAGCCTAGGTGAGGATGTCTCTAAGAGCAAGATACTTGAGGAAGAGGATTATGTTCCTGCGCAAGATTCAAGGAAGATGAACAAGTCAATTGAGCAGTCTCAAAATGCAACGTCTACACCAGATAAAAGTGAATCTACCGTGGAAGAAGGCTTGTCTTCTTGGTTGAAGCCTGCATCTGTTATTTTGGAGGAGAGAAGAAAGAAAATGGAGATGGCTTATAATCAGACCCGCAAAACTCCTGTCGATAGGCCCATCATTGGGATGGTTGCTGCACATTGGATTGAAGAGGAAAATTCTGATGCTCCTCCTCCTAAGTGGTGGGATGGCAATGGCATACCAAATTCAACCAACAAATACAAAGAAGACCAGAAAGTGAGCTGGCATGCTACGCCGTTCGAAGAGAGGTTGGAGAAGGCATTATCTGAGGATACTATCATCGCTCAAAGGAAAGATATTTGCGGAAAACCAATTGCTTTTGATGAGAATGAAGAAAGCGATACTGCATTGTCTCATTTGAAATCTTCATCCCATCCACAGTCCGTGGCGTCGTGTTGA

Protein sequence

>Msa0498370

MLFWLAFIFIITFVFFFRSIFQFIMGCLFTCFRVRDNKRHQAKSAAASAAVPSRHHNKANDDVASRNRLSTLFLTEEGEDNVHRNGRNFEEGSQSDDRQLKDEAKFLKACGTIASTPTEIRKASEKLKVSPSCSNDSGPPKFRSWLLDTSAENVPTNVQPFNPPTPKKQCEEWEKITDCSDHTPSSCISNAHNTQWEYHDSSEGSGQGSYHPTDGTEMNKGRNKSVRFECDTDISSCESSAYGGWRTKKTESPNPTPMKISEGMQTPGTVYPVKSQFVYPNNSLGEDVSKSKILEEEDYVPAQDSRKMNKSIEQSQNATSTPDKSESTVEEGLSSWLKPASVILEERRKKMEMAYNQTRKTPVDRPIIGMVAAHWIEEENSDAPPPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEDTIIAQRKDICGKPIAFDENEESDTALSHLKSSSHPQSVASC*