Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0498370 | XP_013459649.2 | 94.647 | 467 | 20 | 5 | 1 | 466 | 1 | 463 | 0.0 | 868 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0498370 | sp|F4IDQ5|JASON_ARATH | 38.400 | 500 | 222 | 18 | 18 | 465 | 15 | 480 | 5.15e-73 | 241 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0498370 | A0A396IM97 | 94.647 | 467 | 20 | 5 | 1 | 466 | 1 | 463 | 0.0 | 868 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0094180 | Msa0498370 | 0.811491 | 6.817029e-51 | -8.615850e-47 |
Msa0405080 | Msa0498370 | 0.859626 | 3.631476e-63 | -8.615850e-47 |
Msa0451100 | Msa0498370 | 0.916551 | 1.554814e-85 | -8.615850e-47 |
Msa0260570 | Msa0498370 | 0.805286 | 1.436320e-49 | -8.615850e-47 |
Msa0350110 | Msa0498370 | 0.904919 | 7.418745e-80 | -8.615850e-47 |
Msa0498370 | Msa0690320 | 0.802530 | 5.370394e-49 | -8.615850e-47 |
Msa0498370 | Msa1078080 | 0.809448 | 1.882864e-50 | -8.615850e-47 |
Msa0498370 | Msa1400780 | 0.822732 | 2.024244e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0498370 | MtrunA17_Chr3g0095751 | 94.647 | 467 | 20 | 5 | 1 | 466 | 1 | 463 | 0.0 | 868 |
Msa0498370 | MtrunA17_Chr5g0442731 | 44.877 | 488 | 212 | 11 | 1 | 446 | 1 | 473 | 7.07e-119 | 356 |
Msa0498370 | MtrunA17_Chr1g0183391 | 39.683 | 126 | 62 | 4 | 308 | 425 | 317 | 436 | 5.15e-15 | 77.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0498370 | AT1G06660.1 | 38.400 | 500 | 222 | 18 | 18 | 465 | 15 | 480 | 5.23e-74 | 241 |
Msa0498370 | AT2G30820.2 | 35.470 | 468 | 216 | 15 | 25 | 457 | 1 | 417 | 6.03e-60 | 202 |
Msa0498370 | AT2G30820.1 | 35.470 | 468 | 216 | 15 | 25 | 457 | 1 | 417 | 6.03e-60 | 202 |
Find 148 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTCACCTAGGCTGTTATT+TGG | 0.189762 | 3_4:+34489042 | None:intergenic |
GTCCTCCAAAGTTTCGTTCT+TGG | 0.196344 | 3_4:-34489842 | Msa0498370:CDS |
AGGATTGTTGGGTTAAATAT+TGG | 0.204732 | 3_4:-34487833 | Msa0498370:three_prime_UTR |
GAAGCCTGCATCTGTTATTT+TGG | 0.212458 | 3_4:-34488869 | Msa0498370:CDS |
CGGCACGGCGGCGGAGGCAG+CGG | 0.226596 | 3_4:+34492717 | None:intergenic |
TAGCATGCCAGCTCACTTTC+TGG | 0.229927 | 3_4:+34488583 | None:intergenic |
TTGTATTTGTTGGTTGAATT+TGG | 0.246872 | 3_4:+34488697 | None:intergenic |
TGGAAGAAGGCTTGTCTTCT+TGG | 0.254792 | 3_4:-34488894 | Msa0498370:CDS |
CGATGGGACTGAAATGAATA+AGG | 0.261654 | 3_4:-34489241 | Msa0498370:CDS |
GGAGGAGAGAAGAAAGAAAA+TGG | 0.286742 | 3_4:-34488848 | Msa0498370:CDS |
ATCTTCATTGGGGTAGGATT+TGG | 0.293500 | 3_4:+34489123 | None:intergenic |
TCTTCAATGATATGCTCTTC+TGG | 0.313976 | 3_4:-34492861 | Msa0498370:exon |
TCCTGTGAGTCATCGGCTTA+TGG | 0.325210 | 3_4:-34489174 | Msa0498370:CDS |
AGCACTGCATTGGGACTTAA+TGG | 0.325533 | 3_4:+34487940 | None:intergenic |
TCATACTTCTTTGTATTTGT+TGG | 0.327303 | 3_4:+34488687 | None:intergenic |
GGATTGTTGGGTTAAATATT+GGG | 0.336604 | 3_4:-34487832 | Msa0498370:three_prime_UTR |
TACACAAACTGGGACTTAAC+AGG | 0.339806 | 3_4:+34489066 | None:intergenic |
ATCCCTTCAGATATCTTCAT+TGG | 0.349727 | 3_4:+34489111 | None:intergenic |
CCTGACCTACCTTCTTCACT+TGG | 0.366149 | 3_4:-34492888 | Msa0498370:five_prime_UTR |
CCTTCATGTAGTAACGATTC+TGG | 0.376618 | 3_4:-34489864 | Msa0498370:CDS |
TTGAATGGTTGGACATTAGT+TGG | 0.377570 | 3_4:+34489792 | None:intergenic |
TGTTATTTGGATACACAAAC+TGG | 0.390899 | 3_4:+34489055 | None:intergenic |
CCTCCGCCGCCGTGCCGTCT+CGG | 0.397513 | 3_4:-34492711 | Msa0498370:CDS |
CCGAGACGGCACGGCGGCGG+AGG | 0.397598 | 3_4:+34492711 | None:intergenic |
TCCCTTCAGATATCTTCATT+GGG | 0.406133 | 3_4:+34489112 | None:intergenic |
TGGGTTAAATATTGGGCATT+GGG | 0.410553 | 3_4:-34487825 | Msa0498370:three_prime_UTR |
CACGGCGGCGGAGGCAGCGG+CGG | 0.410655 | 3_4:+34492720 | None:intergenic |
TCATTCTCATCAAAAGCAAT+TGG | 0.422122 | 3_4:+34488089 | None:intergenic |
TTGGGAGTTGGCGGATTGAA+TGG | 0.422674 | 3_4:+34489777 | None:intergenic |
CAAGTACCCCTACTGAAATT+CGG | 0.424717 | 3_4:-34489914 | Msa0498370:CDS |
TGCAGCAACCATCCCAATGA+TGG | 0.431713 | 3_4:+34488783 | None:intergenic |
TATATTTGATGAGGATTGTT+GGG | 0.432129 | 3_4:-34487844 | Msa0498370:three_prime_UTR |
AAGACAATGTGCATCGTAAT+GGG | 0.432569 | 3_4:-34491013 | Msa0498370:CDS |
TTGGGTTAAATATTGGGCAT+TGG | 0.435150 | 3_4:-34487826 | Msa0498370:three_prime_UTR |
ATGTTCCTGCGCAAGATTCA+AGG | 0.435844 | 3_4:-34488984 | Msa0498370:CDS |
AGGGATCACAGAGTGATGAT+AGG | 0.453830 | 3_4:-34490977 | Msa0498370:CDS |
CCTGTCGATAGGCCCATCAT+TGG | 0.456758 | 3_4:-34488796 | Msa0498370:CDS |
CCAAGCAATCAGCACTGCAT+TGG | 0.458893 | 3_4:+34487930 | None:intergenic |
GTGCCGAGACGGCACGGCGG+CGG | 0.460806 | 3_4:+34492708 | None:intergenic |
AGGCAGCGGCGGATTTAGCT+TGG | 0.463934 | 3_4:+34492731 | None:intergenic |
CAAGCAATCAGCACTGCATT+GGG | 0.465777 | 3_4:+34487931 | None:intergenic |
TTAACAGGGTAAACAGTTCC+AGG | 0.469267 | 3_4:+34489081 | None:intergenic |
GAGCAAGATACTTGAGGAAG+AGG | 0.471401 | 3_4:-34489010 | Msa0498370:CDS |
GAAGACAATGTGCATCGTAA+TGG | 0.477516 | 3_4:-34491014 | Msa0498370:CDS |
AGAAGCCAAGAACGAAACTT+TGG | 0.484007 | 3_4:+34489837 | None:intergenic |
AATATTGGGCATTGGGAGAT+CGG | 0.485654 | 3_4:-34487818 | Msa0498370:three_prime_UTR |
TCCTCCAAAATAACAGATGC+AGG | 0.487575 | 3_4:+34488865 | None:intergenic |
GATGGGACTGAAATGAATAA+GGG | 0.488622 | 3_4:-34489240 | Msa0498370:CDS |
TCAAATATATACAATACAAG+TGG | 0.489054 | 3_4:+34487858 | None:intergenic |
ACGACGCCACGGACTGTGGA+TGG | 0.492778 | 3_4:+34488027 | None:intergenic |
ATGGGAATATCATGACTCTT+CGG | 0.494202 | 3_4:-34489295 | Msa0498370:CDS |
CCAATGCACACAATACTCAA+TGG | 0.495131 | 3_4:-34489314 | Msa0498370:CDS |
CCAAGTGAAGAAGGTAGGTC+AGG | 0.497945 | 3_4:+34492888 | None:intergenic |
CAGCGGCGGATTTAGCTTGG+TGG | 0.498597 | 3_4:+34492734 | None:intergenic |
GTCCATCTCATTACTCTATG+AGG | 0.502624 | 3_4:-34487985 | Msa0498370:three_prime_UTR |
GCAAAGTTTCTTAAAGCTTG+TGG | 0.503956 | 3_4:-34489945 | Msa0498370:CDS |
ATCTTCCTTGAATCTTGCGC+AGG | 0.504663 | 3_4:+34488979 | None:intergenic |
CAATGCACACAATACTCAAT+GGG | 0.505196 | 3_4:-34489313 | Msa0498370:CDS |
TTCAGTAGGGGTACTTGCTA+TGG | 0.505440 | 3_4:+34489920 | None:intergenic |
CTCTTCGGAAGGAAGTGGGC+AGG | 0.505993 | 3_4:-34489280 | Msa0498370:CDS |
GAAGAGGACCCAAGTGAAGA+AGG | 0.507890 | 3_4:+34492879 | None:intergenic |
CCAATGATGGGCCTATCGAC+AGG | 0.508176 | 3_4:+34488796 | None:intergenic |
ATATATTTGATGAGGATTGT+TGG | 0.511343 | 3_4:-34487845 | Msa0498370:three_prime_UTR |
CCAATGCAGTGCTGATTGCT+TGG | 0.511818 | 3_4:-34487930 | Msa0498370:three_prime_UTR |
CCATTGAGTATTGTGTGCAT+TGG | 0.512181 | 3_4:+34489314 | None:intergenic |
CTTCGGAAGGAAGTGGGCAG+GGG | 0.512249 | 3_4:-34489278 | Msa0498370:CDS |
TGCTCCTCCTCCTAAGTGGT+GGG | 0.512880 | 3_4:-34488734 | Msa0498370:CDS |
CATGACTCTTCGGAAGGAAG+TGG | 0.514139 | 3_4:-34489285 | Msa0498370:CDS |
GATGCTTTCCGAATTTCAGT+AGG | 0.514555 | 3_4:+34489906 | None:intergenic |
CTGTCGATAGGCCCATCATT+GGG | 0.516223 | 3_4:-34488795 | Msa0498370:CDS |
CAACACGACGCCACGGACTG+TGG | 0.521235 | 3_4:+34488023 | None:intergenic |
TCTTCGGAAGGAAGTGGGCA+GGG | 0.526061 | 3_4:-34489279 | Msa0498370:CDS |
TATTTCATCCTGTGAGTCAT+CGG | 0.528657 | 3_4:-34489181 | Msa0498370:CDS |
ATGCTCCTCCTCCTAAGTGG+TGG | 0.530708 | 3_4:-34488735 | Msa0498370:CDS |
GAGAAGAAAGAAAATGGAGA+TGG | 0.532138 | 3_4:-34488842 | Msa0498370:CDS |
TTAAAGATTAATAACCTGCT+AGG | 0.536769 | 3_4:+34489705 | None:intergenic |
AGTGAATCTACCGTGGAAGA+AGG | 0.537717 | 3_4:-34488907 | Msa0498370:CDS |
TCTACTTTGTTTCTGACCGA+AGG | 0.540444 | 3_4:-34491150 | Msa0498370:intron |
GTTCACAGGAAAGATATTTG+CGG | 0.540461 | 3_4:-34488116 | Msa0498370:intron |
CTTATTCATTTCAGTCCCAT+CGG | 0.540593 | 3_4:+34489242 | None:intergenic |
CTGACCTACCTTCTTCACTT+GGG | 0.541465 | 3_4:-34492887 | Msa0498370:five_prime_UTR |
GAGTTGGCGGATTGAATGGT+TGG | 0.541865 | 3_4:+34489781 | None:intergenic |
GTTCAGACCACACACCTAGC+AGG | 0.546465 | 3_4:-34489719 | Msa0498370:intron |
TCAGATATCTTCATTGGGGT+AGG | 0.551648 | 3_4:+34489117 | None:intergenic |
TTCATTTCAGTCCCATCGGT+CGG | 0.552448 | 3_4:+34489246 | None:intergenic |
ATGCTTTCCGAATTTCAGTA+GGG | 0.554306 | 3_4:+34489907 | None:intergenic |
GGGAGCTATCATCCGACCGA+TGG | 0.556557 | 3_4:-34489258 | Msa0498370:CDS |
ACATTACATTGGCTTTGTTG+TGG | 0.556918 | 3_4:+34492686 | None:intergenic |
GAACACGAAAGCAAGTGAAA+AGG | 0.559259 | 3_4:+34492770 | None:intergenic |
TTCAGGACCAGAAAGTGAGC+TGG | 0.559748 | 3_4:-34488590 | Msa0498370:intron |
ACCATAAGCCGATGACTCAC+AGG | 0.559884 | 3_4:+34489173 | None:intergenic |
CCATTGCCATCCCACCACTT+AGG | 0.560739 | 3_4:+34488724 | None:intergenic |
CCTCCTCCTAAGTGGTGGGA+TGG | 0.560739 | 3_4:-34488730 | Msa0498370:CDS |
TCTGAAGGGATGCAAACTCC+TGG | 0.562862 | 3_4:-34489099 | Msa0498370:CDS |
GTTGTGGTGCCGAGACGGCA+CGG | 0.566404 | 3_4:+34492702 | None:intergenic |
TCAGAAACAAAGTAGACAAA+CGG | 0.567517 | 3_4:+34491157 | None:intergenic |
TGTATTGTATATATTTGATG+AGG | 0.567911 | 3_4:-34487853 | Msa0498370:three_prime_UTR |
CGACGCCACGGACTGTGGAT+GGG | 0.567931 | 3_4:+34488028 | None:intergenic |
CCTAAGTGGTGGGATGGCAA+TGG | 0.569676 | 3_4:-34488724 | Msa0498370:CDS |
GTGTATCCAAATAACAGCCT+AGG | 0.571499 | 3_4:-34489048 | Msa0498370:CDS |
ATGCTACGCCGTTCGAAGAG+AGG | 0.575521 | 3_4:-34488566 | Msa0498370:CDS |
CAAATATATACAATACAAGT+GGG | 0.576971 | 3_4:+34487859 | None:intergenic |
ACCCCAATGAAGATATCTGA+AGG | 0.577653 | 3_4:-34489114 | Msa0498370:CDS |
CCATCCCACCACTTAGGAGG+AGG | 0.578549 | 3_4:+34488730 | None:intergenic |
AGTATCACATTCAAAACGTA+CGG | 0.579270 | 3_4:+34489206 | None:intergenic |
TTGGGATGGTTGCTGCACAT+TGG | 0.584288 | 3_4:-34488777 | Msa0498370:CDS |
GGAGCTATCATCCGACCGAT+GGG | 0.587580 | 3_4:-34489257 | Msa0498370:CDS |
GGCGTCGTGTTGATATCTAT+AGG | 0.588523 | 3_4:-34488012 | Msa0498370:exon |
GTTCGAAGAGAGGTTGGAGA+AGG | 0.592220 | 3_4:-34488556 | Msa0498370:CDS |
CGATAGGCCCATCATTGGGA+TGG | 0.592976 | 3_4:-34488791 | Msa0498370:CDS |
AGCCAAGAACGAAACTTTGG+AGG | 0.594708 | 3_4:+34489840 | None:intergenic |
TAGATATCAACACGACGCCA+CGG | 0.596729 | 3_4:+34488016 | None:intergenic |
AGAAGAGCATATCATTGAAG+AGG | 0.597460 | 3_4:+34492863 | None:intergenic |
TACTGAAATTCGGAAAGCAT+CGG | 0.598546 | 3_4:-34489904 | Msa0498370:CDS |
TTCTCCAACCTCTCTTCGAA+CGG | 0.599277 | 3_4:+34488558 | None:intergenic |
TACCTCATAGAGTAATGAGA+TGG | 0.599918 | 3_4:+34487983 | None:intergenic |
AGTCATCGGCTTATGGTGGA+TGG | 0.599998 | 3_4:-34489167 | Msa0498370:CDS |
GCAGCAACCATCCCAATGAT+GGG | 0.601660 | 3_4:+34488784 | None:intergenic |
CTGATGCTCCTCCTCCTAAG+TGG | 0.601801 | 3_4:-34488738 | Msa0498370:CDS |
TCCAAATAACAGCCTAGGTG+AGG | 0.601979 | 3_4:-34489043 | Msa0498370:CDS |
CTCTAAGAGCAAGATACTTG+AGG | 0.603618 | 3_4:-34489016 | Msa0498370:CDS |
TTGCCATCCCACCACTTAGG+AGG | 0.606952 | 3_4:+34488727 | None:intergenic |
TACGCCGTTCGAAGAGAGGT+TGG | 0.606989 | 3_4:-34488562 | Msa0498370:CDS |
GCTTTGTTGTGGTGCCGAGA+CGG | 0.608775 | 3_4:+34492697 | None:intergenic |
AGGACCCAAGTGAAGAAGGT+AGG | 0.610700 | 3_4:+34492883 | None:intergenic |
CCCTTCAGATATCTTCATTG+GGG | 0.615934 | 3_4:+34489113 | None:intergenic |
CCAGAATCGTTACTACATGA+AGG | 0.617304 | 3_4:+34489864 | None:intergenic |
ATGACTCTTCGGAAGGAAGT+GGG | 0.617710 | 3_4:-34489284 | Msa0498370:CDS |
TGCTTTCCGAATTTCAGTAG+GGG | 0.618402 | 3_4:+34489908 | None:intergenic |
AGGATACTATCATCGCTCAA+AGG | 0.620789 | 3_4:-34488524 | Msa0498370:intron |
CCCGCAAAACTCCTGTCGAT+AGG | 0.624406 | 3_4:-34488807 | Msa0498370:CDS |
AGAAGACAAGCCTTCTTCCA+CGG | 0.626278 | 3_4:+34488897 | None:intergenic |
TTCATCCCATCCACAGTCCG+TGG | 0.627583 | 3_4:-34488033 | Msa0498370:CDS |
CCCCAATGAAGATATCTGAA+GGG | 0.632021 | 3_4:-34489113 | Msa0498370:CDS |
GAATATCATGACTCTTCGGA+AGG | 0.632054 | 3_4:-34489291 | Msa0498370:CDS |
CTTTGTAAAGCAGGATGATG+TGG | 0.633113 | 3_4:-34491190 | Msa0498370:intron |
TGCTGCACATTGGATTGAAG+AGG | 0.634738 | 3_4:-34488767 | Msa0498370:CDS |
ACACAAACTGGGACTTAACA+GGG | 0.635382 | 3_4:+34489067 | None:intergenic |
TGTGAGTCATCGGCTTATGG+TGG | 0.636034 | 3_4:-34489171 | Msa0498370:CDS |
TTAATAACCTGCTAGGTGTG+TGG | 0.641765 | 3_4:+34489712 | None:intergenic |
GTTGGAGAAGGCATTATCTG+AGG | 0.647231 | 3_4:-34488544 | Msa0498370:CDS |
ATGGGACTGAAATGAATAAG+GGG | 0.654668 | 3_4:-34489239 | Msa0498370:CDS |
GTTATTTGGATACACAAACT+GGG | 0.662575 | 3_4:+34489056 | None:intergenic |
AGATAAAAGTGAATCTACCG+TGG | 0.669633 | 3_4:-34488914 | Msa0498370:CDS |
TCTTAGAGACATCCTCACCT+AGG | 0.675023 | 3_4:+34489031 | None:intergenic |
TGATAGGCAGCTTAAAGACG+AGG | 0.694138 | 3_4:-34490961 | Msa0498370:intron |
GGACTGAAATGAATAAGGGG+AGG | 0.697836 | 3_4:-34489236 | Msa0498370:CDS |
GTGGTGCCGAGACGGCACGG+CGG | 0.818841 | 3_4:+34492705 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGTTTTTTGAATTTGAATA+TGG | + | chr3_4:34487850-34487869 | None:intergenic | 15.0% |
!! | AAACTTAATTCAATAATCAT+AGG | + | chr3_4:34488271-34488290 | None:intergenic | 15.0% |
!! | AAAAAATTGTTAAATAGGAA+TGG | - | chr3_4:34488412-34488431 | Msa0498370:intron | 15.0% |
!! | AAAAATTGTTAAATAGGAAT+GGG | - | chr3_4:34488413-34488432 | Msa0498370:intron | 15.0% |
!!! | GATTAATTTTATCGATTTAA+AGG | - | chr3_4:34488508-34488527 | Msa0498370:intron | 15.0% |
!! | TTCAAAAAAAAAAATTAAGC+TGG | - | chr3_4:34488672-34488691 | Msa0498370:intron | 15.0% |
!!! | TTTTTTTTTTTTTTCCTGTT+TGG | - | chr3_4:34488704-34488723 | Msa0498370:CDS | 15.0% |
!!! | TTTTTTTTTTTTTCCTGTTT+GGG | - | chr3_4:34488705-34488724 | Msa0498370:CDS | 15.0% |
!!! | ATTTTAGGTTTTTTTTTTGT+TGG | - | chr3_4:34488765-34488784 | Msa0498370:CDS | 15.0% |
!!! | TAGTGTTTGAAATTTTATTT+AGG | - | chr3_4:34489261-34489280 | Msa0498370:CDS | 15.0% |
!!! | AAAGTATTTAATAGTTTTCA+TGG | - | chr3_4:34489422-34489441 | Msa0498370:intron | 15.0% |
!!! | AAGTATTTAATAGTTTTCAT+GGG | - | chr3_4:34489423-34489442 | Msa0498370:intron | 15.0% |
!!! | TTAACCTTTTTTTTTTTGAA+AGG | - | chr3_4:34491123-34491142 | Msa0498370:intron | 15.0% |
!! | TGAAAAGGTTATATTTAATA+TGG | + | chr3_4:34491439-34491458 | None:intergenic | 15.0% |
!! | TAATGAATTGAAAAATGGAT+CGG | + | chr3_4:34488012-34488031 | None:intergenic | 20.0% |
!!! | ATCCATTTTTCAATTCATTA+TGG | - | chr3_4:34488012-34488031 | Msa0498370:exon | 20.0% |
!!! | TCCATTTTTCAATTCATTAT+GGG | - | chr3_4:34488013-34488032 | Msa0498370:exon | 20.0% |
!! | TACAAAAAATCAACAAGAAA+CGG | + | chr3_4:34488168-34488187 | None:intergenic | 20.0% |
!! | TGTGGAAAAAATTGTTAAAT+AGG | - | chr3_4:34488407-34488426 | Msa0498370:intron | 20.0% |
!! | ATGAAATTGTGAAATGATAA+TGG | - | chr3_4:34488534-34488553 | Msa0498370:CDS | 20.0% |
!!! | AAATGTTAGTTTAATTAAGC+TGG | - | chr3_4:34488456-34488475 | Msa0498370:intron | 20.0% |
!!! | TTTTTTGAAGAACCTAAATT+CGG | + | chr3_4:34488661-34488680 | None:intergenic | 20.0% |
!! | AAAAAAAATTAAGCTGGATT+TGG | - | chr3_4:34488678-34488697 | Msa0498370:intron | 20.0% |
!!! | GAAATTTGTTTATGAAATGA+TGG | - | chr3_4:34488790-34488809 | Msa0498370:CDS | 20.0% |
!!! | TAGGTTTGTTATTGATTTAA+AGG | - | chr3_4:34488968-34488987 | Msa0498370:CDS | 20.0% |
!!! | GTTATTGATTTAAAGGATTA+TGG | - | chr3_4:34488975-34488994 | Msa0498370:CDS | 20.0% |
!!! | TAGCTTTGTTATTGATTTAA+TGG | - | chr3_4:34489179-34489198 | Msa0498370:CDS | 20.0% |
!! | TAGCAAAATAAATTTACCTT+CGG | + | chr3_4:34489678-34489697 | None:intergenic | 20.0% |
!!! | TCTCTTTACTTTTTTAATGA+AGG | - | chr3_4:34490439-34490458 | Msa0498370:intron | 20.0% |
!!! | TTTAGATAATTGAGTTTTTG+AGG | + | chr3_4:34490597-34490616 | None:intergenic | 20.0% |
!! | AATAGACAAATGACTTAAAA+AGG | + | chr3_4:34490776-34490795 | None:intergenic | 20.0% |
!!! | TTAAGTTTGTTTACATGATT+TGG | - | chr3_4:34490827-34490846 | Msa0498370:intron | 20.0% |
!! | ATTGCCTTTCAAAAAAAAAA+AGG | + | chr3_4:34491130-34491149 | None:intergenic | 20.0% |
!!! | AAAATTGGTGTTTTAGAAAA+TGG | - | chr3_4:34491328-34491347 | Msa0498370:intron | 20.0% |
!!! | TTTCCCTTTTAGATTTTTTA+AGG | - | chr3_4:34491370-34491389 | Msa0498370:intron | 20.0% |
!!! | TTCCCTTTTAGATTTTTTAA+GGG | - | chr3_4:34491371-34491390 | Msa0498370:intron | 20.0% |
!!! | AAAGAAATTAACTTCTGAAA+AGG | + | chr3_4:34491454-34491473 | None:intergenic | 20.0% |
!!! | AATATCGTTTTAACTTTCAA+AGG | + | chr3_4:34492354-34492373 | None:intergenic | 20.0% |
!! | CAAATATATACAATACAAGT+GGG | + | chr3_4:34492953-34492972 | None:intergenic | 20.0% |
!! | TCAAATATATACAATACAAG+TGG | + | chr3_4:34492954-34492973 | None:intergenic | 20.0% |
!! | TGTATTGTATATATTTGATG+AGG | - | chr3_4:34492956-34492975 | Msa0498370:five_prime_UTR | 20.0% |
! | ACCCATAATGAATTGAAAAA+TGG | + | chr3_4:34488017-34488036 | None:intergenic | 25.0% |
! | GATTATGAGTTACATTACAT+TGG | + | chr3_4:34488137-34488156 | None:intergenic | 25.0% |
!! | AATTCCAAGAATTTTTGTTG+TGG | - | chr3_4:34488389-34488408 | Msa0498370:intron | 25.0% |
!! | TTTTCCACAACAAAAATTCT+TGG | + | chr3_4:34488396-34488415 | None:intergenic | 25.0% |
! | AGTTTAATTAAGCTGGAATT+TGG | - | chr3_4:34488567-34488586 | Msa0498370:CDS | 25.0% |
! | GTTTAATTAAGCTGGAATTT+GGG | - | chr3_4:34488568-34488587 | Msa0498370:CDS | 25.0% |
!!! | GTTCTGGTTTTTGATATTTT+AGG | - | chr3_4:34488750-34488769 | Msa0498370:CDS | 25.0% |
! | CTTGAAATGATAGCTTAATT+TGG | - | chr3_4:34488877-34488896 | Msa0498370:CDS | 25.0% |
!! | TTTTTGGATTTTGTGTGTTT+AGG | - | chr3_4:34488949-34488968 | Msa0498370:CDS | 25.0% |
! | TATGGAATGTAATGTAATGA+TGG | - | chr3_4:34488993-34489012 | Msa0498370:CDS | 25.0% |
!!! | ATTTACTGGAATTTTAGCTT+TGG | - | chr3_4:34489022-34489041 | Msa0498370:CDS | 25.0% |
! | GATTATGAATTGTAGATTTC+AGG | - | chr3_4:34489119-34489138 | Msa0498370:CDS | 25.0% |
!!! | AATGGATTATGAAATGATGA+AGG | - | chr3_4:34489197-34489216 | Msa0498370:CDS | 25.0% |
!!! | TTTTATTTAGGAGCTTTGTT+TGG | - | chr3_4:34489273-34489292 | Msa0498370:CDS | 25.0% |
!!! | GTTCTAGTTACTGAAATTTT+AGG | - | chr3_4:34489386-34489405 | Msa0498370:intron | 25.0% |
!!! | CTTTTACAGTTTTGATGTTA+TGG | - | chr3_4:34489724-34489743 | Msa0498370:CDS | 25.0% |
!! | TCTCAGTAATGTACTAATTT+TGG | - | chr3_4:34489749-34489768 | Msa0498370:CDS | 25.0% |
!! | CTCAGTAATGTACTAATTTT+GGG | - | chr3_4:34489750-34489769 | Msa0498370:CDS | 25.0% |
!! | TCAGTAATGTACTAATTTTG+GGG | - | chr3_4:34489751-34489770 | Msa0498370:CDS | 25.0% |
!!! | GGGTTTAAATTTTGAAAAGA+GGG | - | chr3_4:34489771-34489790 | Msa0498370:CDS | 25.0% |
! | GAAAGATAAAAAATAGCTTC+CGG | + | chr3_4:34490116-34490135 | None:intergenic | 25.0% |
! | AATGTTACCGTTTATGTTTA+TGG | - | chr3_4:34490212-34490231 | Msa0498370:intron | 25.0% |
!! | TGCTTTAACTTAGTTAATGT+AGG | - | chr3_4:34490273-34490292 | Msa0498370:intron | 25.0% |
! | TAATGAAGGTAGAAATTATC+TGG | - | chr3_4:34490453-34490472 | Msa0498370:intron | 25.0% |
! | GACATACTATATAGATATAC+AGG | + | chr3_4:34490521-34490540 | None:intergenic | 25.0% |
!!! | CATTCTTCACATTGTTTTTT+GGG | + | chr3_4:34491053-34491072 | None:intergenic | 25.0% |
! | CAAAAAACAATGTGAAGAAT+GGG | - | chr3_4:34491052-34491071 | Msa0498370:intron | 25.0% |
! | TTAAAGATTAATAACCTGCT+AGG | + | chr3_4:34491107-34491126 | None:intergenic | 25.0% |
! | TGCCCTTAAAAAATCTAAAA+GGG | + | chr3_4:34491376-34491395 | None:intergenic | 25.0% |
! | ATGCCCTTAAAAAATCTAAA+AGG | + | chr3_4:34491377-34491396 | None:intergenic | 25.0% |
!!! | TTTTTTAAGGGCATATCTTA+TGG | - | chr3_4:34491383-34491402 | Msa0498370:intron | 25.0% |
!!! | TTTTTAAGGGCATATCTTAT+GGG | - | chr3_4:34491384-34491403 | Msa0498370:intron | 25.0% |
!! | TTGTATTTGTTGGTTGAATT+TGG | + | chr3_4:34492115-34492134 | None:intergenic | 25.0% |
! | TCATACTTCTTTGTATTTGT+TGG | + | chr3_4:34492125-34492144 | None:intergenic | 25.0% |
! | GAAAACAATCAGCATTAATT+AGG | + | chr3_4:34492202-34492221 | None:intergenic | 25.0% |
!!! | AATTAATGCTGATTGTTTTC+AGG | - | chr3_4:34492202-34492221 | Msa0498370:intron | 25.0% |
! | TGGTAAATTGCTTATGTATA+TGG | + | chr3_4:34492522-34492541 | None:intergenic | 25.0% |
!!! | TGTCTTTTTGATTTGTGATT+TGG | - | chr3_4:34492671-34492690 | Msa0498370:intron | 25.0% |
! | ATATATTTGATGAGGATTGT+TGG | - | chr3_4:34492964-34492983 | Msa0498370:five_prime_UTR | 25.0% |
! | TATATTTGATGAGGATTGTT+GGG | - | chr3_4:34492965-34492984 | Msa0498370:five_prime_UTR | 25.0% |
TTGTTAAATAGGAATGGGAA+TGG | - | chr3_4:34488418-34488437 | Msa0498370:intron | 30.0% | |
TGTTAAATAGGAATGGGAAT+GGG | - | chr3_4:34488419-34488438 | Msa0498370:intron | 30.0% | |
!! | GATGATGAATTTGTTGATTG+CGG | - | chr3_4:34488727-34488746 | Msa0498370:CDS | 30.0% |
!! | ATGATGAATTTGTTGATTGC+GGG | - | chr3_4:34488728-34488747 | Msa0498370:CDS | 30.0% |
!!! | ATGTTCGTTGTTGTTGTTTT+TGG | - | chr3_4:34488933-34488952 | Msa0498370:CDS | 30.0% |
!! | AATGATGGATGATGATTTAC+TGG | - | chr3_4:34489008-34489027 | Msa0498370:CDS | 30.0% |
GAGAAATTGTGAAATGAGAA+TGG | - | chr3_4:34489044-34489063 | Msa0498370:CDS | 30.0% | |
AATGAGAATGGTTGAAATGT+TGG | - | chr3_4:34489056-34489075 | Msa0498370:CDS | 30.0% | |
!!! | TTCTGGTTTCTGAAGTTTTA+TGG | - | chr3_4:34489142-34489161 | Msa0498370:CDS | 30.0% |
! | TTGGTAGCTAAAATGTTGAA+TGG | - | chr3_4:34489292-34489311 | Msa0498370:CDS | 30.0% |
AAATTCATCATCTCAAGAAG+GGG | + | chr3_4:34489355-34489374 | None:intergenic | 30.0% | |
CAAATTCATCATCTCAAGAA+GGG | + | chr3_4:34489356-34489375 | None:intergenic | 30.0% | |
ACAAATTCATCATCTCAAGA+AGG | + | chr3_4:34489357-34489376 | None:intergenic | 30.0% | |
!!! | TTTTGACTTTTTGATGTGAC+TGG | - | chr3_4:34489584-34489603 | Msa0498370:intron | 30.0% |
TCAGAAACAAAGTAGACAAA+CGG | + | chr3_4:34489655-34489674 | None:intergenic | 30.0% | |
!! | GGGGTTTAAATTTTGAAAAG+AGG | - | chr3_4:34489770-34489789 | Msa0498370:CDS | 30.0% |
TGTAATGTGTATTCGCAATT+CGG | - | chr3_4:34489962-34489981 | Msa0498370:intron | 30.0% | |
! | AGAACTCTACTTGATAGTAT+TGG | - | chr3_4:34490044-34490063 | Msa0498370:intron | 30.0% |
TCAATTCAATACTTGAGAGT+TGG | + | chr3_4:34490147-34490166 | None:intergenic | 30.0% | |
! | CTTTAGTTTCTGTTTAAGTG+AGG | - | chr3_4:34490182-34490201 | Msa0498370:intron | 30.0% |
CTGTCTACCATAAACATAAA+CGG | + | chr3_4:34490222-34490241 | None:intergenic | 30.0% | |
ATACAATGTAGTGAGTATCA+AGG | + | chr3_4:34490339-34490358 | None:intergenic | 30.0% | |
!! | CATTGTATTTTTCGATCTCA+AGG | - | chr3_4:34490351-34490370 | Msa0498370:intron | 30.0% |
CTTACAGATAAATGCACAAT+TGG | - | chr3_4:34490391-34490410 | Msa0498370:intron | 30.0% | |
AAGAGATTGCAGTTAAGTTA+TGG | + | chr3_4:34490425-34490444 | None:intergenic | 30.0% | |
! | TAAAATAGCTGATGTTTTGC+TGG | - | chr3_4:34490620-34490639 | Msa0498370:intron | 30.0% |
!!! | GACTTAAAAAGGTGTTTTTG+AGG | + | chr3_4:34490765-34490784 | None:intergenic | 30.0% |
!!! | TGATTTGGTAAACATTTTGC+AGG | - | chr3_4:34490842-34490861 | Msa0498370:intron | 30.0% |
!!! | CCATTCTTCACATTGTTTTT+TGG | + | chr3_4:34491054-34491073 | None:intergenic | 30.0% |
CCAAAAAACAATGTGAAGAA+TGG | - | chr3_4:34491051-34491070 | Msa0498370:intron | 30.0% | |
GTACATTACATGCATTAAAC+AGG | + | chr3_4:34491159-34491178 | None:intergenic | 30.0% | |
AACAACCACACAATCAATTT+CGG | - | chr3_4:34491196-34491215 | Msa0498370:intron | 30.0% | |
TAAGCCTTTCTTATACAAGA+TGG | + | chr3_4:34491258-34491277 | None:intergenic | 30.0% | |
TCTTGTATAAGAAAGGCTTA+AGG | - | chr3_4:34491258-34491277 | Msa0498370:intron | 30.0% | |
AATGTGTTCCTCTTCAAAAT+TGG | - | chr3_4:34491313-34491332 | Msa0498370:intron | 30.0% | |
!! | CTAAAACACCAATTTTGAAG+AGG | + | chr3_4:34491324-34491343 | None:intergenic | 30.0% |
!! | TTTTAAGGGCATATCTTATG+GGG | - | chr3_4:34491385-34491404 | Msa0498370:intron | 30.0% |
AGTATCACATTCAAAACGTA+CGG | + | chr3_4:34491606-34491625 | None:intergenic | 30.0% | |
GTTATTTGGATACACAAACT+GGG | + | chr3_4:34491756-34491775 | None:intergenic | 30.0% | |
! | TGTTATTTGGATACACAAAC+TGG | + | chr3_4:34491757-34491776 | None:intergenic | 30.0% |
! | ATACAAAGAAGTATGATCCT+TGG | - | chr3_4:34492129-34492148 | Msa0498370:intron | 30.0% |
AGACTTCTAATTCTTTCACA+TGG | + | chr3_4:34492165-34492184 | None:intergenic | 30.0% | |
AGGAATTCAACGATACATAA+AGG | + | chr3_4:34492446-34492465 | None:intergenic | 30.0% | |
AGAAACCTGTATGATTTAGT+GGG | + | chr3_4:34492643-34492662 | None:intergenic | 30.0% | |
TCATTCTCATCAAAAGCAAT+TGG | + | chr3_4:34492723-34492742 | None:intergenic | 30.0% | |
AGGATTGTTGGGTTAAATAT+TGG | - | chr3_4:34492976-34492995 | Msa0498370:five_prime_UTR | 30.0% | |
GGATTGTTGGGTTAAATATT+GGG | - | chr3_4:34492977-34492996 | Msa0498370:five_prime_UTR | 30.0% | |
! | AGAAGAGCATATCATTGAAG+AGG | + | chr3_4:34487949-34487968 | None:intergenic | 35.0% |
TCTTCAATGATATGCTCTTC+TGG | - | chr3_4:34487948-34487967 | Msa0498370:three_prime_UTR | 35.0% | |
GGATCGGAAAAAAAAAACGA+AGG | + | chr3_4:34487996-34488015 | None:intergenic | 35.0% | |
!! | ACATTACATTGGCTTTGTTG+TGG | + | chr3_4:34488126-34488145 | None:intergenic | 35.0% |
AATTAAGCTGGAATTTGGGT+TGG | - | chr3_4:34488572-34488591 | Msa0498370:CDS | 35.0% | |
TTGAAGAACCTAAATTCGGA+CGG | + | chr3_4:34488657-34488676 | None:intergenic | 35.0% | |
ACAAATTCATCATCCCAAAC+AGG | + | chr3_4:34488721-34488740 | None:intergenic | 35.0% | |
CAACGAACATAAGAACAAAG+AGG | + | chr3_4:34488923-34488942 | None:intergenic | 35.0% | |
!! | GAATTGTAGATTTCAGGTTC+TGG | - | chr3_4:34489125-34489144 | Msa0498370:CDS | 35.0% |
!! | CTTCTGGTTGCTGAAATTTT+TGG | - | chr3_4:34489478-34489497 | Msa0498370:intron | 35.0% |
! | GAATTTGCTCTTTGTAAAGC+AGG | - | chr3_4:34489610-34489629 | Msa0498370:intron | 35.0% |
AAGACAATGTGCATCGTAAT+GGG | - | chr3_4:34489796-34489815 | Msa0498370:CDS | 35.0% | |
!! | TCGTAATGGGAGAAATTTTG+AGG | - | chr3_4:34489809-34489828 | Msa0498370:CDS | 35.0% |
!! | TAATGGGAGAAATTTTGAGG+AGG | - | chr3_4:34489812-34489831 | Msa0498370:CDS | 35.0% |
!! | AATGGGAGAAATTTTGAGGA+GGG | - | chr3_4:34489813-34489832 | Msa0498370:CDS | 35.0% |
TTCATGCATGTTTAGCTGTT+TGG | - | chr3_4:34489922-34489941 | Msa0498370:CDS | 35.0% | |
!! | CAGTGTCTTAGTCTTATATC+AGG | + | chr3_4:34489998-34490017 | None:intergenic | 35.0% |
GATATAAGACTAAGACACTG+AGG | - | chr3_4:34489998-34490017 | Msa0498370:intron | 35.0% | |
GGTAAGTGTTATACTAACGA+TGG | + | chr3_4:34490301-34490320 | None:intergenic | 35.0% | |
!! | ATTTTTCGATCTCAAGGTTC+TGG | - | chr3_4:34490357-34490376 | Msa0498370:intron | 35.0% |
AGAAATTATCTGGTTGTCCA+TGG | - | chr3_4:34490463-34490482 | Msa0498370:intron | 35.0% | |
GCAAAGTTTCTTAAAGCTTG+TGG | - | chr3_4:34490864-34490883 | Msa0498370:intron | 35.0% | |
ATGCTTTCCGAATTTCAGTA+GGG | + | chr3_4:34490905-34490924 | None:intergenic | 35.0% | |
! | TACTGAAATTCGGAAAGCAT+CGG | - | chr3_4:34490905-34490924 | Msa0498370:intron | 35.0% |
TTGAATGGTTGGACATTAGT+TGG | + | chr3_4:34491020-34491039 | None:intergenic | 35.0% | |
!!! | TCACATTGTTTTTTGGGAGT+TGG | + | chr3_4:34491047-34491066 | None:intergenic | 35.0% |
TCTTATTACTATTAGCGCGA+TGG | - | chr3_4:34491228-34491247 | Msa0498370:intron | 35.0% | |
CTTATTACTATTAGCGCGAT+GGG | - | chr3_4:34491229-34491248 | Msa0498370:intron | 35.0% | |
GACACCATCTTGTATAAGAA+AGG | - | chr3_4:34491251-34491270 | Msa0498370:intron | 35.0% | |
! | GAAGAGGAACACATTTTCTT+AGG | + | chr3_4:34491308-34491327 | None:intergenic | 35.0% |
CAATGCACACAATACTCAAT+GGG | - | chr3_4:34491496-34491515 | Msa0498370:intron | 35.0% | |
ATGGGAATATCATGACTCTT+CGG | - | chr3_4:34491514-34491533 | Msa0498370:intron | 35.0% | |
CTTATTCATTTCAGTCCCAT+CGG | + | chr3_4:34491570-34491589 | None:intergenic | 35.0% | |
GATGGGACTGAAATGAATAA+GGG | - | chr3_4:34491569-34491588 | Msa0498370:intron | 35.0% | |
ATGGGACTGAAATGAATAAG+GGG | - | chr3_4:34491570-34491589 | Msa0498370:intron | 35.0% | |
TATTTCATCCTGTGAGTCAT+CGG | - | chr3_4:34491628-34491647 | Msa0498370:intron | 35.0% | |
TCCCTTCAGATATCTTCATT+GGG | + | chr3_4:34491700-34491719 | None:intergenic | 35.0% | |
ATCCCTTCAGATATCTTCAT+TGG | + | chr3_4:34491701-34491720 | None:intergenic | 35.0% | |
!! | ACGGTAGATTCACTTTTATC+TGG | + | chr3_4:34491896-34491915 | None:intergenic | 35.0% |
AGATAAAAGTGAATCTACCG+TGG | - | chr3_4:34491895-34491914 | Msa0498370:intron | 35.0% | |
GAGAAGAAAGAAAATGGAGA+TGG | - | chr3_4:34491967-34491986 | Msa0498370:intron | 35.0% | |
AGAAGTTTGTACTTCTGATG+CGG | - | chr3_4:34492375-34492394 | Msa0498370:intron | 35.0% | |
! | GTAAGTGGTCTTTTGTCAAA+TGG | + | chr3_4:34492542-34492561 | None:intergenic | 35.0% |
GCACTCAATACAAAAGTAAG+TGG | + | chr3_4:34492557-34492576 | None:intergenic | 35.0% | |
!! | AGTCTCGCGATTTTGATAAT+TGG | - | chr3_4:34492616-34492635 | Msa0498370:intron | 35.0% |
GAGAAACCTGTATGATTTAG+TGG | + | chr3_4:34492644-34492663 | None:intergenic | 35.0% | |
!! | TGATTTGTGATTTGGTTCAC+AGG | - | chr3_4:34492679-34492698 | Msa0498370:intron | 35.0% |
GTTCACAGGAAAGATATTTG+CGG | - | chr3_4:34492693-34492712 | Msa0498370:CDS | 35.0% | |
TACCTCATAGAGTAATGAGA+TGG | + | chr3_4:34492829-34492848 | None:intergenic | 35.0% | |
TTGGGTTAAATATTGGGCAT+TGG | - | chr3_4:34492983-34493002 | Msa0498370:five_prime_UTR | 35.0% | |
TGGGTTAAATATTGGGCATT+GGG | - | chr3_4:34492984-34493003 | Msa0498370:five_prime_UTR | 35.0% | |
GAACACGAAAGCAAGTGAAA+AGG | + | chr3_4:34488042-34488061 | None:intergenic | 40.0% | |
!! | TATGAAGCACTGACACTTCT+TGG | - | chr3_4:34488201-34488220 | Msa0498370:intron | 40.0% |
CACTGACACTTCTTGGATTA+GGG | - | chr3_4:34488208-34488227 | Msa0498370:intron | 40.0% | |
! | ACTGACACTTCTTGGATTAG+GGG | - | chr3_4:34488209-34488228 | Msa0498370:intron | 40.0% |
AATAGGAATGGGAATGGGAA+TGG | - | chr3_4:34488424-34488443 | Msa0498370:intron | 40.0% | |
GAATGGATCCTAAAACCTTG+AGG | + | chr3_4:34488631-34488650 | None:intergenic | 40.0% | |
TGAAGAACCTAAATTCGGAC+GGG | + | chr3_4:34488656-34488675 | None:intergenic | 40.0% | |
!! | AATTTGTTGATTGCGGGTTC+TGG | - | chr3_4:34488734-34488753 | Msa0498370:CDS | 40.0% |
GTGAAATACTGAAATGCGAG+TGG | - | chr3_4:34488848-34488867 | Msa0498370:CDS | 40.0% | |
ATGGTTGAGATGATCGCTTT+CGG | - | chr3_4:34489311-34489330 | Msa0498370:CDS | 40.0% | |
TTCTGAGTATGTTCTGCTTC+TGG | - | chr3_4:34489462-34489481 | Msa0498370:intron | 40.0% | |
CTTTGTAAAGCAGGATGATG+TGG | - | chr3_4:34489619-34489638 | Msa0498370:intron | 40.0% | |
!! | TCTACTTTGTTTCTGACCGA+AGG | - | chr3_4:34489659-34489678 | Msa0498370:intron | 40.0% |
GAAGACAATGTGCATCGTAA+TGG | - | chr3_4:34489795-34489814 | Msa0498370:CDS | 40.0% | |
ATGCATGTTTAGCTGTTTGG+AGG | - | chr3_4:34489925-34489944 | Msa0498370:CDS | 40.0% | |
GTCTTATATCAGGAGCGAAA+TGG | + | chr3_4:34489988-34490007 | None:intergenic | 40.0% | |
CGAAGATGTCTCATTGAGAA+TGG | - | chr3_4:34490078-34490097 | Msa0498370:intron | 40.0% | |
AGAATGGCCAGAATTATGAC+CGG | - | chr3_4:34490094-34490113 | Msa0498370:intron | 40.0% | |
ATAGCTTCCGGTCATAATTC+TGG | + | chr3_4:34490104-34490123 | None:intergenic | 40.0% | |
! | CATTGAAGAAGTAAGCACTG+TGG | + | chr3_4:34490245-34490264 | None:intergenic | 40.0% |
TCAAGGCTTTCTTAGTATCG+TGG | + | chr3_4:34490322-34490341 | None:intergenic | 40.0% | |
ATACACCACAAATCTTAGCC+AGG | + | chr3_4:34490495-34490514 | None:intergenic | 40.0% | |
TACAAGCATATGCATGTCCT+GGG | - | chr3_4:34490548-34490567 | Msa0498370:intron | 40.0% | |
! | AATAGCTGATGTTTTGCTGG+TGG | - | chr3_4:34490623-34490642 | Msa0498370:intron | 40.0% |
CAAGTACCCCTACTGAAATT+CGG | - | chr3_4:34490895-34490914 | Msa0498370:intron | 40.0% | |
TGCTTTCCGAATTTCAGTAG+GGG | + | chr3_4:34490904-34490923 | None:intergenic | 40.0% | |
GATGCTTTCCGAATTTCAGT+AGG | + | chr3_4:34490906-34490925 | None:intergenic | 40.0% | |
CCAGAATCGTTACTACATGA+AGG | + | chr3_4:34490948-34490967 | None:intergenic | 40.0% | |
CCTTCATGTAGTAACGATTC+TGG | - | chr3_4:34490945-34490964 | Msa0498370:intron | 40.0% | |
AGAAGCCAAGAACGAAACTT+TGG | + | chr3_4:34490975-34490994 | None:intergenic | 40.0% | |
!!! | CATTGTTTTTTGGGAGTTGG+CGG | + | chr3_4:34491044-34491063 | None:intergenic | 40.0% |
TTAATAACCTGCTAGGTGTG+TGG | + | chr3_4:34491100-34491119 | None:intergenic | 40.0% | |
AACCACACAATCAATTTCGG+TGG | - | chr3_4:34491199-34491218 | Msa0498370:intron | 40.0% | |
ATCCACCGAAATTGATTGTG+TGG | + | chr3_4:34491204-34491223 | None:intergenic | 40.0% | |
! | CCATTGAGTATTGTGTGCAT+TGG | + | chr3_4:34491498-34491517 | None:intergenic | 40.0% |
CCAATGCACACAATACTCAA+TGG | - | chr3_4:34491495-34491514 | Msa0498370:intron | 40.0% | |
GAATATCATGACTCTTCGGA+AGG | - | chr3_4:34491518-34491537 | Msa0498370:intron | 40.0% | |
CGATGGGACTGAAATGAATA+AGG | - | chr3_4:34491568-34491587 | Msa0498370:intron | 40.0% | |
ATCTTCATTGGGGTAGGATT+TGG | + | chr3_4:34491689-34491708 | None:intergenic | 40.0% | |
TCAGATATCTTCATTGGGGT+AGG | + | chr3_4:34491695-34491714 | None:intergenic | 40.0% | |
ACCCCAATGAAGATATCTGA+AGG | - | chr3_4:34491695-34491714 | Msa0498370:intron | 40.0% | |
CCCTTCAGATATCTTCATTG+GGG | + | chr3_4:34491699-34491718 | None:intergenic | 40.0% | |
CCCCAATGAAGATATCTGAA+GGG | - | chr3_4:34491696-34491715 | Msa0498370:intron | 40.0% | |
TTAACAGGGTAAACAGTTCC+AGG | + | chr3_4:34491731-34491750 | None:intergenic | 40.0% | |
ACACAAACTGGGACTTAACA+GGG | + | chr3_4:34491745-34491764 | None:intergenic | 40.0% | |
TACACAAACTGGGACTTAAC+AGG | + | chr3_4:34491746-34491765 | None:intergenic | 40.0% | |
GTGTATCCAAATAACAGCCT+AGG | - | chr3_4:34491761-34491780 | Msa0498370:intron | 40.0% | |
! | CTCTAAGAGCAAGATACTTG+AGG | - | chr3_4:34491793-34491812 | Msa0498370:intron | 40.0% |
!! | GAAGCCTGCATCTGTTATTT+TGG | - | chr3_4:34491940-34491959 | Msa0498370:intron | 40.0% |
TCCTCCAAAATAACAGATGC+AGG | + | chr3_4:34491947-34491966 | None:intergenic | 40.0% | |
GGAGGAGAGAAGAAAGAAAA+TGG | - | chr3_4:34491961-34491980 | Msa0498370:intron | 40.0% | |
CACATGGAAAATAGCTACCA+AGG | + | chr3_4:34492149-34492168 | None:intergenic | 40.0% | |
AGGATACTATCATCGCTCAA+AGG | - | chr3_4:34492285-34492304 | Msa0498370:intron | 40.0% | |
GCAAACAACAGTGCTTTCAT+AGG | + | chr3_4:34492315-34492334 | None:intergenic | 40.0% | |
TTCAACGTCATGCTAAACTC+AGG | + | chr3_4:34492466-34492485 | None:intergenic | 40.0% | |
TTGGTCCCACTAAATCATAC+AGG | - | chr3_4:34492635-34492654 | Msa0498370:intron | 40.0% | |
GTCCATCTCATTACTCTATG+AGG | - | chr3_4:34492824-34492843 | Msa0498370:CDS | 40.0% | |
!! | AATATTGGGCATTGGGAGAT+CGG | - | chr3_4:34492991-34493010 | Msa0498370:five_prime_UTR | 40.0% |
CTGACCTACCTTCTTCACTT+GGG | - | chr3_4:34487922-34487941 | Msa0498370:three_prime_UTR | 45.0% | |
! | GCACTGACACTTCTTGGATT+AGG | - | chr3_4:34488207-34488226 | Msa0498370:intron | 45.0% |
CAAAGTCACACACACTGACA+CGG | + | chr3_4:34488341-34488360 | None:intergenic | 45.0% | |
!! | TAAGCTGGAATTTGGGTTGG+TGG | - | chr3_4:34488575-34488594 | Msa0498370:CDS | 45.0% |
!! | GGAATTTGGGTTGGTGGTAT+TGG | - | chr3_4:34488581-34488600 | Msa0498370:CDS | 45.0% |
TGGATCCTAAAACCTTGAGG+AGG | + | chr3_4:34488628-34488647 | None:intergenic | 45.0% | |
GAAGAACCTAAATTCGGACG+GGG | + | chr3_4:34488655-34488674 | None:intergenic | 45.0% | |
AGGGATCACAGAGTGATGAT+AGG | - | chr3_4:34489832-34489851 | Msa0498370:CDS | 45.0% | |
TGATAGGCAGCTTAAAGACG+AGG | - | chr3_4:34489848-34489867 | Msa0498370:CDS | 45.0% | |
! | ATCTCAAGGTTCTGGCAGTA+GGG | - | chr3_4:34490365-34490384 | Msa0498370:intron | 45.0% |
GCATTCCTGGCTAAGATTTG+TGG | - | chr3_4:34490487-34490506 | Msa0498370:intron | 45.0% | |
CTACAAGCATATGCATGTCC+TGG | - | chr3_4:34490547-34490566 | Msa0498370:intron | 45.0% | |
!! | TTCAGTAGGGGTACTTGCTA+TGG | + | chr3_4:34490892-34490911 | None:intergenic | 45.0% |
GTCCTCCAAAGTTTCGTTCT+TGG | - | chr3_4:34490967-34490986 | Msa0498370:CDS | 45.0% | |
AGCCAAGAACGAAACTTTGG+AGG | + | chr3_4:34490972-34490991 | None:intergenic | 45.0% | |
ATGACTCTTCGGAAGGAAGT+GGG | - | chr3_4:34491525-34491544 | Msa0498370:intron | 45.0% | |
TTCATTTCAGTCCCATCGGT+CGG | + | chr3_4:34491566-34491585 | None:intergenic | 45.0% | |
GGACTGAAATGAATAAGGGG+AGG | - | chr3_4:34491573-34491592 | Msa0498370:intron | 45.0% | |
TCCAAATAACAGCCTAGGTG+AGG | - | chr3_4:34491766-34491785 | Msa0498370:intron | 45.0% | |
TCCTCACCTAGGCTGTTATT+TGG | + | chr3_4:34491770-34491789 | None:intergenic | 45.0% | |
TCTTAGAGACATCCTCACCT+AGG | + | chr3_4:34491781-34491800 | None:intergenic | 45.0% | |
GAGCAAGATACTTGAGGAAG+AGG | - | chr3_4:34491799-34491818 | Msa0498370:intron | 45.0% | |
ATGTTCCTGCGCAAGATTCA+AGG | - | chr3_4:34491825-34491844 | Msa0498370:intron | 45.0% | |
ATCTTCCTTGAATCTTGCGC+AGG | + | chr3_4:34491833-34491852 | None:intergenic | 45.0% | |
AGTGAATCTACCGTGGAAGA+AGG | - | chr3_4:34491902-34491921 | Msa0498370:intron | 45.0% | |
AGAAGACAAGCCTTCTTCCA+CGG | + | chr3_4:34491915-34491934 | None:intergenic | 45.0% | |
TGGAAGAAGGCTTGTCTTCT+TGG | - | chr3_4:34491915-34491934 | Msa0498370:intron | 45.0% | |
!!! | GCCTGCATCTGTTATTTTGG+AGG | - | chr3_4:34491943-34491962 | Msa0498370:intron | 45.0% |
TGCTGCACATTGGATTGAAG+AGG | - | chr3_4:34492042-34492061 | Msa0498370:intron | 45.0% | |
TTCTCCAACCTCTCTTCGAA+CGG | + | chr3_4:34492254-34492273 | None:intergenic | 45.0% | |
!! | GTTGGAGAAGGCATTATCTG+AGG | - | chr3_4:34492265-34492284 | Msa0498370:intron | 45.0% |
TAGATATCAACACGACGCCA+CGG | + | chr3_4:34492796-34492815 | None:intergenic | 45.0% | |
! | GGCGTCGTGTTGATATCTAT+AGG | - | chr3_4:34492797-34492816 | Msa0498370:CDS | 45.0% |
AGCACTGCATTGGGACTTAA+TGG | + | chr3_4:34492872-34492891 | None:intergenic | 45.0% | |
CAAGCAATCAGCACTGCATT+GGG | + | chr3_4:34492881-34492900 | None:intergenic | 45.0% | |
CCAAGTGAAGAAGGTAGGTC+AGG | + | chr3_4:34487924-34487943 | None:intergenic | 50.0% | |
CCTGACCTACCTTCTTCACT+TGG | - | chr3_4:34487921-34487940 | Msa0498370:three_prime_UTR | 50.0% | |
AGGACCCAAGTGAAGAAGGT+AGG | + | chr3_4:34487929-34487948 | None:intergenic | 50.0% | |
GAAGAGGACCCAAGTGAAGA+AGG | + | chr3_4:34487933-34487952 | None:intergenic | 50.0% | |
!! | TTGGGTTGGTGGTATTGGCT+TGG | - | chr3_4:34488586-34488605 | Msa0498370:CDS | 50.0% |
!! | TGGGTTGGTGGTATTGGCTT+GGG | - | chr3_4:34488587-34488606 | Msa0498370:CDS | 50.0% |
! | GTGCTCCTCCTCAAGGTTTT+AGG | - | chr3_4:34488620-34488639 | Msa0498370:intron | 50.0% |
CTAAATTCGGACGGGGAGAA+TGG | + | chr3_4:34488648-34488667 | None:intergenic | 50.0% | |
CATTCTCCCCGTCCGAATTT+AGG | - | chr3_4:34488646-34488665 | Msa0498370:intron | 50.0% | |
! | GATCTCAAGGTTCTGGCAGT+AGG | - | chr3_4:34490364-34490383 | Msa0498370:intron | 50.0% |
TCTTAGCCAGGAATGCACCA+TGG | + | chr3_4:34490483-34490502 | None:intergenic | 50.0% | |
AAAAGTTTGTGAGCCAGCCC+AGG | + | chr3_4:34490568-34490587 | None:intergenic | 50.0% | |
! | GCTGATGTTTTGCTGGTGGA+AGG | - | chr3_4:34490627-34490646 | Msa0498370:intron | 50.0% |
!! | GAGTTGGCGGATTGAATGGT+TGG | + | chr3_4:34491031-34491050 | None:intergenic | 50.0% |
!! | TTGGGAGTTGGCGGATTGAA+TGG | + | chr3_4:34491035-34491054 | None:intergenic | 50.0% |
CATGACTCTTCGGAAGGAAG+TGG | - | chr3_4:34491524-34491543 | Msa0498370:intron | 50.0% | |
!! | TCCTGTGAGTCATCGGCTTA+TGG | - | chr3_4:34491635-34491654 | Msa0498370:intron | 50.0% |
ACCATAAGCCGATGACTCAC+AGG | + | chr3_4:34491639-34491658 | None:intergenic | 50.0% | |
!! | TGTGAGTCATCGGCTTATGG+TGG | - | chr3_4:34491638-34491657 | Msa0498370:intron | 50.0% |
!! | AGTCATCGGCTTATGGTGGA+TGG | - | chr3_4:34491642-34491661 | Msa0498370:intron | 50.0% |
TCTGAAGGGATGCAAACTCC+TGG | - | chr3_4:34491710-34491729 | Msa0498370:intron | 50.0% | |
! | CCTATCGACAGGAGTTTTGC+GGG | + | chr3_4:34492005-34492024 | None:intergenic | 50.0% |
! | GCCTATCGACAGGAGTTTTG+CGG | + | chr3_4:34492006-34492025 | None:intergenic | 50.0% |
CTGTCGATAGGCCCATCATT+GGG | - | chr3_4:34492014-34492033 | Msa0498370:intron | 50.0% | |
GCAGCAACCATCCCAATGAT+GGG | + | chr3_4:34492028-34492047 | None:intergenic | 50.0% | |
TGCAGCAACCATCCCAATGA+TGG | + | chr3_4:34492029-34492048 | None:intergenic | 50.0% | |
TTGGGATGGTTGCTGCACAT+TGG | - | chr3_4:34492032-34492051 | Msa0498370:intron | 50.0% | |
TTCAGGACCAGAAAGTGAGC+TGG | - | chr3_4:34492219-34492238 | Msa0498370:intron | 50.0% | |
TAGCATGCCAGCTCACTTTC+TGG | + | chr3_4:34492229-34492248 | None:intergenic | 50.0% | |
GTTCGAAGAGAGGTTGGAGA+AGG | - | chr3_4:34492253-34492272 | Msa0498370:intron | 50.0% | |
CCAAGCAATCAGCACTGCAT+TGG | + | chr3_4:34492882-34492901 | None:intergenic | 50.0% | |
!! | CCAATGCAGTGCTGATTGCT+TGG | - | chr3_4:34492879-34492898 | Msa0498370:five_prime_UTR | 50.0% |
! | GCTTTGTTGTGGTGCCGAGA+CGG | + | chr3_4:34488115-34488134 | None:intergenic | 55.0% |
ACTGACACGGCACACTGACA+CGG | + | chr3_4:34488328-34488347 | None:intergenic | 55.0% | |
!! | GTGGTATTGGCTTGGGACCT+GGG | - | chr3_4:34488594-34488613 | Msa0498370:intron | 55.0% |
GGTTGTCCATGGTGCATTCC+TGG | - | chr3_4:34490474-34490493 | Msa0498370:intron | 55.0% | |
AGCATATGCATGTCCTGGGC+TGG | - | chr3_4:34490552-34490571 | Msa0498370:intron | 55.0% | |
GTTCAGACCACACACCTAGC+AGG | - | chr3_4:34491090-34491109 | Msa0498370:intron | 55.0% | |
TCTTCGGAAGGAAGTGGGCA+GGG | - | chr3_4:34491530-34491549 | Msa0498370:intron | 55.0% | |
GGAGCTATCATCCGACCGAT+GGG | - | chr3_4:34491552-34491571 | Msa0498370:intron | 55.0% | |
CCCGCAAAACTCCTGTCGAT+AGG | - | chr3_4:34492002-34492021 | Msa0498370:intron | 55.0% | |
!! | CCAATGATGGGCCTATCGAC+AGG | + | chr3_4:34492016-34492035 | None:intergenic | 55.0% |
CCTGTCGATAGGCCCATCAT+TGG | - | chr3_4:34492013-34492032 | Msa0498370:intron | 55.0% | |
CGATAGGCCCATCATTGGGA+TGG | - | chr3_4:34492018-34492037 | Msa0498370:intron | 55.0% | |
CTGATGCTCCTCCTCCTAAG+TGG | - | chr3_4:34492071-34492090 | Msa0498370:intron | 55.0% | |
ATGCTCCTCCTCCTAAGTGG+TGG | - | chr3_4:34492074-34492093 | Msa0498370:intron | 55.0% | |
TGCTCCTCCTCCTAAGTGGT+GGG | - | chr3_4:34492075-34492094 | Msa0498370:intron | 55.0% | |
TTGCCATCCCACCACTTAGG+AGG | + | chr3_4:34492085-34492104 | None:intergenic | 55.0% | |
CCATTGCCATCCCACCACTT+AGG | + | chr3_4:34492088-34492107 | None:intergenic | 55.0% | |
! | CCTAAGTGGTGGGATGGCAA+TGG | - | chr3_4:34492085-34492104 | Msa0498370:intron | 55.0% |
ATGCTACGCCGTTCGAAGAG+AGG | - | chr3_4:34492243-34492262 | Msa0498370:intron | 55.0% | |
TACGCCGTTCGAAGAGAGGT+TGG | - | chr3_4:34492247-34492266 | Msa0498370:intron | 55.0% | |
TTCATCCCATCCACAGTCCG+TGG | - | chr3_4:34492776-34492795 | Msa0498370:CDS | 55.0% | |
!! | CAGCGGCGGATTTAGCTTGG+TGG | + | chr3_4:34488078-34488097 | None:intergenic | 60.0% |
! | AGGCAGCGGCGGATTTAGCT+TGG | + | chr3_4:34488081-34488100 | None:intergenic | 60.0% |
! | GGGGTGTCTCAGTGTCAGAC+AGG | - | chr3_4:34488228-34488247 | Msa0498370:intron | 60.0% |
!! | GGTGGTATTGGCTTGGGACC+TGG | - | chr3_4:34488593-34488612 | Msa0498370:intron | 60.0% |
! | TTGAGGAGGAGCACACTCCC+AGG | + | chr3_4:34488614-34488633 | None:intergenic | 60.0% |
! | TGGGAGTGTGCTCCTCCTCA+AGG | - | chr3_4:34488613-34488632 | Msa0498370:intron | 60.0% |
CTCTTCGGAAGGAAGTGGGC+AGG | - | chr3_4:34491529-34491548 | Msa0498370:intron | 60.0% | |
CTTCGGAAGGAAGTGGGCAG+GGG | - | chr3_4:34491531-34491550 | Msa0498370:intron | 60.0% | |
GGGAGCTATCATCCGACCGA+TGG | - | chr3_4:34491551-34491570 | Msa0498370:intron | 60.0% | |
CCATCCCACCACTTAGGAGG+AGG | + | chr3_4:34492082-34492101 | None:intergenic | 60.0% | |
! | CCTCCTCCTAAGTGGTGGGA+TGG | - | chr3_4:34492079-34492098 | Msa0498370:intron | 60.0% |
! | GTTGTGGTGCCGAGACGGCA+CGG | + | chr3_4:34488110-34488129 | None:intergenic | 65.0% |
! | CGACGCCACGGACTGTGGAT+GGG | + | chr3_4:34492784-34492803 | None:intergenic | 65.0% |
! | ACGACGCCACGGACTGTGGA+TGG | + | chr3_4:34492785-34492804 | None:intergenic | 65.0% |
! | CAACACGACGCCACGGACTG+TGG | + | chr3_4:34492789-34492808 | None:intergenic | 65.0% |
! | GTGGTGCCGAGACGGCACGG+CGG | + | chr3_4:34488107-34488126 | None:intergenic | 75.0% |
! | CCTCCGCCGCCGTGCCGTCT+CGG | - | chr3_4:34488098-34488117 | Msa0498370:CDS | 80.0% |
! | GTGCCGAGACGGCACGGCGG+CGG | + | chr3_4:34488104-34488123 | None:intergenic | 80.0% |
! | CACGGCGGCGGAGGCAGCGG+CGG | + | chr3_4:34488092-34488111 | None:intergenic | 85.0% |
! | CGGCACGGCGGCGGAGGCAG+CGG | + | chr3_4:34488095-34488114 | None:intergenic | 85.0% |
! | CCGAGACGGCACGGCGGCGG+AGG | + | chr3_4:34488101-34488120 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 34487817 | 34493014 | 34487817 | ID=Msa0498370;Name=Msa0498370 |
chr3_4 | mRNA | 34487817 | 34493014 | 34487817 | ID=Msa0498370-mRNA-1;Parent=Msa0498370;Name=Msa0498370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|7|205|466 |
chr3_4 | exon | 34487817 | 34488130 | 34487817 | ID=Msa0498370-mRNA-1:exon:7325;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34488525 | 34488607 | 34488525 | ID=Msa0498370-mRNA-1:exon:7324;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34488693 | 34489344 | 34488693 | ID=Msa0498370-mRNA-1:exon:7323;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34489720 | 34489967 | 34489720 | ID=Msa0498370-mRNA-1:exon:7322;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34490962 | 34491041 | 34490962 | ID=Msa0498370-mRNA-1:exon:7321;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34491151 | 34491199 | 34491151 | ID=Msa0498370-mRNA-1:exon:7320;Parent=Msa0498370-mRNA-1 |
chr3_4 | exon | 34492693 | 34493014 | 34492693 | ID=Msa0498370-mRNA-1:exon:7319;Parent=Msa0498370-mRNA-1 |
chr3_4 | five_prime_UTR | 34492873 | 34493014 | 34492873 | ID=Msa0498370-mRNA-1:five_prime_utr;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34492693 | 34492872 | 34492693 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34491151 | 34491199 | 34491151 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34490962 | 34491041 | 34490962 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34489720 | 34489967 | 34489720 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34488693 | 34489344 | 34488693 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34488525 | 34488607 | 34488525 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | CDS | 34488022 | 34488130 | 34488022 | ID=Msa0498370-mRNA-1:cds;Parent=Msa0498370-mRNA-1 |
chr3_4 | three_prime_UTR | 34487817 | 34488021 | 34487817 | ID=Msa0498370-mRNA-1:three_prime_utr;Parent=Msa0498370-mRNA-1 |
Gene Sequence |
Protein sequence |