Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453500 | XP_013459813.1 | 97.490 | 239 | 5 | 1 | 1 | 239 | 1 | 238 | 1.92e-172 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453500 | A0A072UVJ3 | 97.490 | 239 | 5 | 1 | 1 | 239 | 1 | 238 | 9.15e-173 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0453500 | Msa0819540 | 0.846810 | 1.718494e-59 | -8.615850e-47 |
| Msa0453500 | Msa1131170 | 0.806186 | 9.296625e-50 | -8.615850e-47 |
| Msa0245060 | Msa0453500 | 0.804281 | 2.328672e-49 | -8.615850e-47 |
| Msa0276960 | Msa0453500 | 0.812326 | 4.484069e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453500 | MtrunA17_Chr3g0099331 | 97.490 | 239 | 5 | 1 | 1 | 239 | 1 | 238 | 1.76e-176 | 489 |
| Msa0453500 | MtrunA17_Chr4g0057971 | 62.019 | 208 | 79 | 0 | 34 | 241 | 38 | 245 | 5.54e-99 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0453500 | AT5G63280.1 | 60.870 | 207 | 79 | 1 | 30 | 234 | 26 | 232 | 8.25e-97 | 287 |
| Msa0453500 | AT5G40710.1 | 57.078 | 219 | 89 | 1 | 21 | 239 | 26 | 239 | 4.81e-93 | 278 |
| Msa0453500 | AT5G40710.2 | 58.523 | 176 | 68 | 1 | 21 | 196 | 26 | 196 | 2.71e-75 | 231 |
Find 80 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTCCAATTTACTTAATT+TGG | 0.122652 | 3_3:-43883823 | Msa0453500:intron |
| AATGTTATTGTTCAGAATTC+TGG | 0.162180 | 3_3:-43884241 | Msa0453500:intron |
| TCAACTTAGTAAACAAATTT+AGG | 0.178442 | 3_3:+43880561 | None:intergenic |
| AAGAACAATGAATAAGATTT+TGG | 0.184207 | 3_3:-43885380 | Msa0453500:exon |
| TCATACCAAATTAAGTAAAT+TGG | 0.245660 | 3_3:+43883818 | None:intergenic |
| TATGAGATTTATGTTGTTCC+TGG | 0.279195 | 3_3:+43883928 | None:intergenic |
| AACACGTGGCAAATTCTAAT+AGG | 0.326262 | 3_3:-43885554 | Msa0453500:five_prime_UTR |
| CCTGCAGCGAGCCGGCTTCA+TGG | 0.327309 | 3_3:-43882645 | Msa0453500:intron |
| TGTGATCATGAAATTAATTC+CGG | 0.329062 | 3_3:-43882837 | Msa0453500:CDS |
| GTATTTCAGAGGATTGAAAA+AGG | 0.338241 | 3_3:-43881111 | Msa0453500:intron |
| CTTCTTGCATAGACTTGGTT+TGG | 0.339145 | 3_3:+43885496 | None:intergenic |
| GCTGCAGGACCCTCGTTAAC+TGG | 0.349350 | 3_3:+43882660 | None:intergenic |
| AAGATTGGATCCACGTTGAT+TGG | 0.361789 | 3_3:-43880651 | Msa0453500:three_prime_UTR |
| TCAAATTACCCTGCGTCCTC+TGG | 0.372524 | 3_3:+43882475 | None:intergenic |
| AGCCGAATTCATTGTATACT+TGG | 0.373737 | 3_3:-43880836 | Msa0453500:three_prime_UTR |
| ACAAAATCTAAGCCTGTGTT+TGG | 0.380893 | 3_3:+43880692 | None:intergenic |
| TGGTGTTCTTGTTGCTTACA+AGG | 0.396400 | 3_3:-43885339 | Msa0453500:CDS |
| TTATTTCTTGCTGCAGCAGC+AGG | 0.412858 | 3_3:+43882792 | None:intergenic |
| TCTCTATATATATCATTGTC+AGG | 0.420126 | 3_3:+43883951 | None:intergenic |
| CACCAAGTATACAATGAATT+CGG | 0.423230 | 3_3:+43880834 | None:intergenic |
| ATCCACGGCCACACCACATT+GGG | 0.429683 | 3_3:+43880778 | None:intergenic |
| TGCTATTTGCAAGTGAAAGT+TGG | 0.443743 | 3_3:-43880919 | Msa0453500:CDS |
| GTGATCATGAAATTAATTCC+GGG | 0.457434 | 3_3:-43882836 | Msa0453500:CDS |
| GCAGTATTTGACGCCATTTG+TGG | 0.459297 | 3_3:-43884015 | Msa0453500:intron |
| AAAGTAACTGTGTATCTAAC+GGG | 0.460709 | 3_3:-43880988 | Msa0453500:CDS |
| ATTGTTCAGAATTCTGGATC+AGG | 0.460914 | 3_3:-43884235 | Msa0453500:intron |
| CCATGAAGCCGGCTCGCTGC+AGG | 0.478890 | 3_3:+43882645 | None:intergenic |
| GAGAAAGAAGTAGAATAGCT+TGG | 0.485109 | 3_3:-43884179 | Msa0453500:CDS |
| TGTGATGCTCACAGCTGCAC+TGG | 0.491135 | 3_3:-43882515 | Msa0453500:CDS |
| GTCCCAATGTGGTGTGGCCG+TGG | 0.500354 | 3_3:-43880780 | Msa0453500:three_prime_UTR |
| AGATGCTTCTTGCATAGACT+TGG | 0.506547 | 3_3:+43885491 | None:intergenic |
| AATCCACGGCCACACCACAT+TGG | 0.511319 | 3_3:+43880777 | None:intergenic |
| ACAGGTTGAGAGCTTCTAAA+GGG | 0.514372 | 3_3:+43881019 | None:intergenic |
| CTCATATAGATATAAATGAA+TGG | 0.514723 | 3_3:-43883911 | Msa0453500:CDS |
| AACAGGTTGAGAGCTTCTAA+AGG | 0.522436 | 3_3:+43881018 | None:intergenic |
| GCTCACAGCTGCACTGGACG+TGG | 0.522911 | 3_3:-43882509 | Msa0453500:CDS |
| TGTTTGGAACCACGTCGAAA+AGG | 0.523202 | 3_3:+43880708 | None:intergenic |
| ACCCTGCGTCCTCTGGAGAA+AGG | 0.523798 | 3_3:+43882482 | None:intergenic |
| ACGAGGGTCCTGCAGCGAGC+CGG | 0.531828 | 3_3:-43882653 | Msa0453500:CDS |
| GAAAGATCTAATGATTATGA+TGG | 0.534381 | 3_3:+43881041 | None:intergenic |
| GGTTTGGTTTCAACGATTTG+TGG | 0.534617 | 3_3:-43885359 | Msa0453500:CDS |
| TTCGACGTGGTTCCAAACAC+AGG | 0.535727 | 3_3:-43880704 | Msa0453500:three_prime_UTR |
| ATTTAGGAAATACACTGTAA+AGG | 0.540362 | 3_3:+43880577 | None:intergenic |
| GAAAGTAACTGTGTATCTAA+CGG | 0.540404 | 3_3:-43880989 | Msa0453500:CDS |
| ATAATATCTCAAGAAGGTGC+AGG | 0.547108 | 3_3:-43883980 | Msa0453500:CDS |
| TATTTGCAAGTGAAAGTTGG+AGG | 0.550005 | 3_3:-43880916 | Msa0453500:CDS |
| TGGAAAACAACTATCGGCTA+TGG | 0.556119 | 3_3:+43882680 | None:intergenic |
| TTATAGCTTTACAAAATCCA+CGG | 0.558228 | 3_3:+43880763 | None:intergenic |
| CTGAGGCGTGTCTCACAAGC+CGG | 0.560885 | 3_3:-43881077 | Msa0453500:CDS |
| GCCTTTCTCCAGAGGACGCA+GGG | 0.563120 | 3_3:-43882483 | Msa0453500:intron |
| CACATACATCTGCTAAGCAC+CGG | 0.569311 | 3_3:+43882871 | None:intergenic |
| CACATTCTCACGTCCCAATG+TGG | 0.582864 | 3_3:-43880791 | Msa0453500:three_prime_UTR |
| TTGCAAGTGAAAGTTGGAGG+AGG | 0.590282 | 3_3:-43880913 | Msa0453500:CDS |
| CTCTATATATATCATTGTCA+GGG | 0.590660 | 3_3:+43883952 | None:intergenic |
| GTTAACTGGAAAACAACTAT+CGG | 0.597061 | 3_3:+43882674 | None:intergenic |
| TTGCAGCATCTGAATCTACA+TGG | 0.597085 | 3_3:+43884725 | None:intergenic |
| CGTGGAAAGCCTTTCTCCAG+AGG | 0.599380 | 3_3:-43882491 | Msa0453500:CDS |
| CGGTGCTTAGCAGATGTATG+TGG | 0.600256 | 3_3:-43882870 | Msa0453500:CDS |
| ATATTGAAATACCATGAAGC+CGG | 0.604823 | 3_3:+43882634 | None:intergenic |
| ATGTAGATTCAGATGCTGCA+AGG | 0.607887 | 3_3:-43884723 | Msa0453500:intron |
| AGCCTTTCTCCAGAGGACGC+AGG | 0.608333 | 3_3:-43882484 | Msa0453500:CDS |
| ACTTTATTAAACATACAGGT+AGG | 0.615374 | 3_3:+43880507 | None:intergenic |
| AGCTTGGAAGATCGTTCAAG+AGG | 0.626181 | 3_3:-43884163 | Msa0453500:intron |
| GTTGAATCCAGAAAGAAAGC+CGG | 0.628642 | 3_3:-43882890 | Msa0453500:intron |
| CAATGATATATATAGAGACC+AGG | 0.632044 | 3_3:-43883946 | Msa0453500:CDS |
| TGTGCATGACATCACTAACA+AGG | 0.632332 | 3_3:-43880613 | Msa0453500:three_prime_UTR |
| TCTCACGTCCCAATGTGGTG+TGG | 0.633100 | 3_3:-43880786 | Msa0453500:three_prime_UTR |
| AAGAAATAAGCATATATGTG+AGG | 0.634147 | 3_3:-43882778 | Msa0453500:intron |
| TCTAATAGGCCACTGTGTCG+TGG | 0.642879 | 3_3:-43885540 | Msa0453500:five_prime_UTR |
| GATATAAATGAATGGCAGTG+TGG | 0.647971 | 3_3:-43883903 | Msa0453500:CDS |
| AAAAGGAAAATCAAATGCTG+AGG | 0.649523 | 3_3:-43881094 | Msa0453500:CDS |
| TGAAAGTTGGAGGAGGAAAG+CGG | 0.671069 | 3_3:-43880906 | Msa0453500:CDS |
| CTTACATCATCATCAGTGTG+TGG | 0.677365 | 3_3:+43885304 | None:intergenic |
| GTGCATGACATCACTAACAA+GGG | 0.715616 | 3_3:-43880612 | Msa0453500:three_prime_UTR |
| ACTGTGTCGTGGTTCCACAG+AGG | 0.720619 | 3_3:-43885529 | Msa0453500:five_prime_UTR |
| TTGGTACCAGAAAACCTCTG+TGG | 0.729850 | 3_3:+43885515 | None:intergenic |
| ATGAAAATAGCCAATCAACG+TGG | 0.731493 | 3_3:+43880641 | None:intergenic |
| TCTGTGGAACCACGACACAG+TGG | 0.732675 | 3_3:+43885531 | None:intergenic |
| TCGAAAAGGCTACTAACATG+CGG | 0.742295 | 3_3:+43880722 | None:intergenic |
| ATTCTGGATCAGGAGCAGAG+TGG | 0.757422 | 3_3:-43884225 | Msa0453500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATAATACTAGTTTTA+TGG | + | chr3_3:43881208-43881227 | None:intergenic | 10.0% |
| !!! | TATTTTTTGAAATATTAATG+TGG | - | chr3_3:43882388-43882407 | Msa0453500:intron | 10.0% |
| !!! | CTATTTTCTAAAATTATTAT+TGG | - | chr3_3:43882560-43882579 | Msa0453500:intron | 10.0% |
| !!! | GTTGATAATTTTTTTTTTTT+GGG | + | chr3_3:43884609-43884628 | None:intergenic | 10.0% |
| !!! | TGTTGATAATTTTTTTTTTT+TGG | + | chr3_3:43884610-43884629 | None:intergenic | 10.0% |
| !! | TTTAATAATAACTATTGTAA+CGG | - | chr3_3:43884886-43884905 | Msa0453500:intron | 10.0% |
| !!! | TTTGATTTTATGAATTTTGA+TGG | - | chr3_3:43880883-43880902 | Msa0453500:CDS | 15.0% |
| !!! | AAAATATTTTTACCTTTTCT+TGG | - | chr3_3:43881727-43881746 | Msa0453500:intron | 15.0% |
| !! | AAAAATATAATATCTCAAGA+AGG | - | chr3_3:43882056-43882075 | Msa0453500:intron | 15.0% |
| !!! | TAAAATTGTATTGATTCTAT+TGG | + | chr3_3:43882260-43882279 | None:intergenic | 15.0% |
| !!! | GAAATTTTAAAACAACTTTA+AGG | - | chr3_3:43883003-43883022 | Msa0453500:intron | 15.0% |
| !! | AGAAATTAGAACATAAAATT+AGG | + | chr3_3:43883327-43883346 | None:intergenic | 15.0% |
| !! | CAATAGTTATTATTAAAGTA+TGG | + | chr3_3:43884883-43884902 | None:intergenic | 15.0% |
| !! | AAAAACTTTATTAAACATAC+AGG | + | chr3_3:43885542-43885561 | None:intergenic | 15.0% |
| !!! | AGTTTCAATCTTTTTTTGTT+CGG | - | chr3_3:43880598-43880617 | Msa0453500:three_prime_UTR | 20.0% |
| !!! | AAGAACAATGAATAAGATTT+TGG | - | chr3_3:43880662-43880681 | Msa0453500:three_prime_UTR | 20.0% |
| !!! | AAATTTGCTGAATTTAATCA+TGG | - | chr3_3:43880855-43880874 | Msa0453500:exon | 20.0% |
| !!! | AATTTGCTGAATTTAATCAT+GGG | - | chr3_3:43880856-43880875 | Msa0453500:exon | 20.0% |
| !!! | TGATGGAAATTTAGTTTTTA+AGG | - | chr3_3:43880900-43880919 | Msa0453500:CDS | 20.0% |
| !!! | GATGGAAATTTAGTTTTTAA+GGG | - | chr3_3:43880901-43880920 | Msa0453500:CDS | 20.0% |
| !!! | ATTTTTCTACTTGAGAAAAA+TGG | - | chr3_3:43881098-43881117 | Msa0453500:CDS | 20.0% |
| !!! | TTTTTCTACTTGAGAAAAAT+GGG | - | chr3_3:43881099-43881118 | Msa0453500:CDS | 20.0% |
| !!! | TTATATGTAGATGTTTTCTT+TGG | - | chr3_3:43881145-43881164 | Msa0453500:intron | 20.0% |
| !!! | ATGATCTGAATATTTTTCAA+TGG | - | chr3_3:43881178-43881197 | Msa0453500:intron | 20.0% |
| !! | TCAATTTCTTTACTTATTAG+TGG | + | chr3_3:43881626-43881645 | None:intergenic | 20.0% |
| !!! | TATTTTTCTTTATCCACAAA+TGG | + | chr3_3:43882043-43882062 | None:intergenic | 20.0% |
| !! | CTCATATAGATATAAATGAA+TGG | - | chr3_3:43882131-43882150 | Msa0453500:intron | 20.0% |
| !! | TCATACCAAATTAAGTAAAT+TGG | + | chr3_3:43882227-43882246 | None:intergenic | 20.0% |
| !!! | ATTAATGTGGTTATTTTATG+AGG | - | chr3_3:43882401-43882420 | Msa0453500:intron | 20.0% |
| !!! | AGTTTTAAAGTTCATTGTTT+AGG | - | chr3_3:43882885-43882904 | Msa0453500:intron | 20.0% |
| !!! | TAAAATTTCTAGATCAATAC+AGG | + | chr3_3:43882992-43883011 | None:intergenic | 20.0% |
| !! | GTTAATCCTTATGAAAATTT+CGG | - | chr3_3:43883086-43883105 | Msa0453500:intron | 20.0% |
| !! | TTGCAGAATTTATATATCTA+TGG | - | chr3_3:43883444-43883463 | Msa0453500:intron | 20.0% |
| !! | TTGTTAAATAGATGCTATAT+TGG | - | chr3_3:43883626-43883645 | Msa0453500:intron | 20.0% |
| !! | TTATACCCAATAGTATATTA+CGG | + | chr3_3:43883691-43883710 | None:intergenic | 20.0% |
| !! | TATAAAATGATGTCAAATAG+TGG | - | chr3_3:43883706-43883725 | Msa0453500:intron | 20.0% |
| !!! | ACAAGATAATATTTAGAGTT+TGG | + | chr3_3:43883840-43883859 | None:intergenic | 20.0% |
| !! | ATTTAAGTCTCCTTATAAAA+AGG | + | chr3_3:43883947-43883966 | None:intergenic | 20.0% |
| !!! | AGTATTTGTTACATAATAAG+TGG | + | chr3_3:43884075-43884094 | None:intergenic | 20.0% |
| !! | TTATGTAACAAATACTATGA+TGG | - | chr3_3:43884079-43884098 | Msa0453500:intron | 20.0% |
| !!! | ACTGTTTTTAAAAGCTATAT+TGG | + | chr3_3:43884274-43884293 | None:intergenic | 20.0% |
| !! | TCTACATGTATTTATATCAA+AGG | - | chr3_3:43884828-43884847 | Msa0453500:intron | 20.0% |
| !! | TCAACTTAGTAAACAAATTT+AGG | + | chr3_3:43885484-43885503 | None:intergenic | 20.0% |
| !!! | AATCTTTTTTTGTTCGGAAA+TGG | - | chr3_3:43880604-43880623 | Msa0453500:three_prime_UTR | 25.0% |
| !!! | CAATGAATAAGATTTTGGTT+TGG | - | chr3_3:43880667-43880686 | Msa0453500:three_prime_UTR | 25.0% |
| !!! | GTAAATACCCATTTTTCTTT+TGG | - | chr3_3:43880828-43880847 | Msa0453500:three_prime_UTR | 25.0% |
| ! | TTTCTCACCAAAAGAAAAAT+GGG | + | chr3_3:43880838-43880857 | None:intergenic | 25.0% |
| ! | ATTTCTCACCAAAAGAAAAA+TGG | + | chr3_3:43880839-43880858 | None:intergenic | 25.0% |
| ! | ACATATAACAACTGAAACAA+AGG | + | chr3_3:43881133-43881152 | None:intergenic | 25.0% |
| ! | TGTAACAAAGAAACAATCAA+AGG | + | chr3_3:43881294-43881313 | None:intergenic | 25.0% |
| !! | TTTGATTGTTTCTTTGTTAC+AGG | - | chr3_3:43881293-43881312 | Msa0453500:intron | 25.0% |
| !! | TTGATTGTTTCTTTGTTACA+GGG | - | chr3_3:43881294-43881313 | Msa0453500:intron | 25.0% |
| !! | GACATTAAAACTGATTAGTT+TGG | + | chr3_3:43881471-43881490 | None:intergenic | 25.0% |
| !!! | ACTAATCAGTTTTAATGTCT+TGG | - | chr3_3:43881472-43881491 | Msa0453500:intron | 25.0% |
| ! | AATGTTATTGTTCAGAATTC+TGG | - | chr3_3:43881801-43881820 | Msa0453500:intron | 25.0% |
| ! | TATCCAATATTGATGTATGT+TGG | + | chr3_3:43881968-43881987 | None:intergenic | 25.0% |
| ! | CTCTATATATATCATTGTCA+GGG | + | chr3_3:43882093-43882112 | None:intergenic | 25.0% |
| ! | TCTCTATATATATCATTGTC+AGG | + | chr3_3:43882094-43882113 | None:intergenic | 25.0% |
| ! | ACACTCCAATTTACTTAATT+TGG | - | chr3_3:43882219-43882238 | Msa0453500:intron | 25.0% |
| ! | ACTAGTTATTTGATCAACAA+TGG | + | chr3_3:43882292-43882311 | None:intergenic | 25.0% |
| ! | TTGTTGATCAAATAACTAGT+TGG | - | chr3_3:43882292-43882311 | Msa0453500:intron | 25.0% |
| ! | CAAGTGTGTTCTTAAATATT+AGG | + | chr3_3:43882720-43882739 | None:intergenic | 25.0% |
| ! | TTTAAGGGAAGTAAAATTTC+AGG | + | chr3_3:43882832-43882851 | None:intergenic | 25.0% |
| !! | AATCTACCGAAATTTTCATA+AGG | + | chr3_3:43883095-43883114 | None:intergenic | 25.0% |
| ! | TTCAATTATTAAACCGACTA+GGG | + | chr3_3:43883119-43883138 | None:intergenic | 25.0% |
| ! | TTTCAATTATTAAACCGACT+AGG | + | chr3_3:43883120-43883139 | None:intergenic | 25.0% |
| ! | TCGGTTTAATAATTGAAATG+AGG | - | chr3_3:43883122-43883141 | Msa0453500:intron | 25.0% |
| ! | TGTGATCATGAAATTAATTC+CGG | - | chr3_3:43883205-43883224 | Msa0453500:intron | 25.0% |
| ! | AAGAAATAAGCATATATGTG+AGG | - | chr3_3:43883264-43883283 | Msa0453500:intron | 25.0% |
| ! | AGAATTCTGTCAAATTGTTA+AGG | + | chr3_3:43883493-43883512 | None:intergenic | 25.0% |
| ! | ATTGTTCCGTAATATACTAT+TGG | - | chr3_3:43883682-43883701 | Msa0453500:intron | 25.0% |
| ! | TTGTTCCGTAATATACTATT+GGG | - | chr3_3:43883683-43883702 | Msa0453500:intron | 25.0% |
| !!! | TTTCCAGAGATCTTTATTTT+TGG | - | chr3_3:43883867-43883886 | Msa0453500:CDS | 25.0% |
| ! | AAGTAAGTTCTTCAGAATTT+CGG | + | chr3_3:43883902-43883921 | None:intergenic | 25.0% |
| !! | AAAAATCGCACCTTTTTATA+AGG | - | chr3_3:43883934-43883953 | Msa0453500:CDS | 25.0% |
| ! | AAACTAATTATCTCTCCTAT+AGG | - | chr3_3:43884108-43884127 | Msa0453500:intron | 25.0% |
| !! | GTTTTACAAGTTTATCCTAT+AGG | + | chr3_3:43884126-43884145 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGTAAAACAA+TGG | - | chr3_3:43884128-43884147 | Msa0453500:intron | 25.0% |
| ! | CAAAACTTATGAAAGTAGAT+AGG | + | chr3_3:43884179-43884198 | None:intergenic | 25.0% |
| ! | GGAATTATAAAAGTTTCTTG+TGG | + | chr3_3:43884642-43884661 | None:intergenic | 25.0% |
| !!! | TTTTCACTTTTGTATTTCAG+AGG | - | chr3_3:43884920-43884939 | Msa0453500:intron | 25.0% |
| !!! | ATTATGATGGCTTCTTTTTT+CGG | + | chr3_3:43884991-43885010 | None:intergenic | 25.0% |
| ! | GAAAGATCTAATGATTATGA+TGG | + | chr3_3:43885004-43885023 | None:intergenic | 25.0% |
| !! | TTATAGCTTTACAAAATCCA+CGG | + | chr3_3:43885282-43885301 | None:intergenic | 25.0% |
| ! | CACAAAGGAAAAAAAAAGAT+TGG | - | chr3_3:43885376-43885395 | Msa0453500:CDS | 25.0% |
| ! | ATTTAGGAAATACACTGTAA+AGG | + | chr3_3:43885468-43885487 | None:intergenic | 25.0% |
| ! | ACTTTATTAAACATACAGGT+AGG | + | chr3_3:43885538-43885557 | None:intergenic | 25.0% |
| !! | CTGTTTGATTTGCATGAAAT+TGG | - | chr3_3:43881001-43881020 | Msa0453500:CDS | 30.0% |
| GGATTACCATAGAATTGAAT+TGG | - | chr3_3:43881022-43881041 | Msa0453500:CDS | 30.0% | |
| ACAACTCCAATTCAATTCTA+TGG | + | chr3_3:43881031-43881050 | None:intergenic | 30.0% | |
| ! | TTTTTACACTCGCGAAAATT+AGG | + | chr3_3:43881267-43881286 | None:intergenic | 30.0% |
| !! | ATGTCTGATTCGAAGTATTT+TGG | - | chr3_3:43881355-43881374 | Msa0453500:intron | 30.0% |
| AGTTATTTATCGTTTCTCCA+CGG | + | chr3_3:43881512-43881531 | None:intergenic | 30.0% | |
| GTAATTGAATGTAGCTACAT+AGG | - | chr3_3:43881648-43881667 | Msa0453500:intron | 30.0% | |
| CAAGCATATAAACCAAGAAA+AGG | + | chr3_3:43881742-43881761 | None:intergenic | 30.0% | |
| !! | CAGTTGAGTCATTTTATTGT+TGG | + | chr3_3:43881918-43881937 | None:intergenic | 30.0% |
| TGACCAACATACATCAATAT+TGG | - | chr3_3:43881962-43881981 | Msa0453500:intron | 30.0% | |
| CAATGATATATATAGAGACC+AGG | - | chr3_3:43882096-43882115 | Msa0453500:intron | 30.0% | |
| TATGAGATTTATGTTGTTCC+TGG | + | chr3_3:43882117-43882136 | None:intergenic | 30.0% | |
| TTGATCAAATAACTAGTTGG+TGG | - | chr3_3:43882295-43882314 | Msa0453500:intron | 30.0% | |
| TACTTCAATCTAATCCAAAC+TGG | + | chr3_3:43882334-43882353 | None:intergenic | 30.0% | |
| GTGTTCTTAAATATTAGGCT+TGG | + | chr3_3:43882715-43882734 | None:intergenic | 30.0% | |
| ! | ATTGTTTTCATGTTTTGTCC+AGG | + | chr3_3:43882751-43882770 | None:intergenic | 30.0% |
| TACTAACTCACGACTTATTT+CGG | + | chr3_3:43882778-43882797 | None:intergenic | 30.0% | |
| GGAAGTAAAATTTCAGGATT+TGG | + | chr3_3:43882826-43882845 | None:intergenic | 30.0% | |
| ! | TTAGGCTAGACTAAGTTTTA+AGG | - | chr3_3:43882903-43882922 | Msa0453500:intron | 30.0% |
| !! | AAACCTACTTTTGATTGCTA+TGG | - | chr3_3:43882938-43882957 | Msa0453500:intron | 30.0% |
| TTACCATAGCAATCAAAAGT+AGG | + | chr3_3:43882944-43882963 | None:intergenic | 30.0% | |
| GTGATCATGAAATTAATTCC+GGG | - | chr3_3:43883206-43883225 | Msa0453500:intron | 30.0% | |
| GTTAACTGGAAAACAACTAT+CGG | + | chr3_3:43883371-43883390 | None:intergenic | 30.0% | |
| ATATTGAAATACCATGAAGC+CGG | + | chr3_3:43883411-43883430 | None:intergenic | 30.0% | |
| TCACCAAAAATAAAGATCTC+TGG | + | chr3_3:43883873-43883892 | None:intergenic | 30.0% | |
| !!! | GAGATCTTTATTTTTGGTGA+AGG | - | chr3_3:43883873-43883892 | Msa0453500:CDS | 30.0% |
| AGAGACAGAAAATCTAAAGA+GGG | + | chr3_3:43883996-43884015 | None:intergenic | 30.0% | |
| ! | GATTTTCTGTCTCTCTTTAT+TGG | - | chr3_3:43884002-43884021 | Msa0453500:CDS | 30.0% |
| TTACATAATAAGTGGTATGC+TGG | + | chr3_3:43884067-43884086 | None:intergenic | 30.0% | |
| TGTAAAACAATGGACATGTT+TGG | - | chr3_3:43884138-43884157 | Msa0453500:intron | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr3_3:43884189-43884208 | Msa0453500:CDS | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr3_3:43884190-43884209 | Msa0453500:CDS | 30.0% |
| AATAAGTTGTTTATCCACAC+AGG | - | chr3_3:43884407-43884426 | Msa0453500:intron | 30.0% | |
| AAGTATGGTTATTACAGAGA+AGG | + | chr3_3:43884868-43884887 | None:intergenic | 30.0% | |
| TACAAAAGTGAAAACCTTGT+TGG | + | chr3_3:43884914-43884933 | None:intergenic | 30.0% | |
| GTATTTCAGAGGATTGAAAA+AGG | - | chr3_3:43884931-43884950 | Msa0453500:intron | 30.0% | |
| AAAAGGAAAATCAAATGCTG+AGG | - | chr3_3:43884948-43884967 | Msa0453500:intron | 30.0% | |
| ! | CAGTTACTTTCTGAAAAAAC+AGG | + | chr3_3:43885044-43885063 | None:intergenic | 30.0% |
| GAAAGTAACTGTGTATCTAA+CGG | - | chr3_3:43885053-43885072 | Msa0453500:intron | 30.0% | |
| AAAGTAACTGTGTATCTAAC+GGG | - | chr3_3:43885054-43885073 | Msa0453500:intron | 30.0% | |
| ! | ATAGCAGAAAAAGTGTAAAC+TGG | + | chr3_3:43885109-43885128 | None:intergenic | 30.0% |
| !!! | GATAGACATGATTTTCAAGT+TGG | + | chr3_3:43885170-43885189 | None:intergenic | 30.0% |
| CACCAAGTATACAATGAATT+CGG | + | chr3_3:43885211-43885230 | None:intergenic | 30.0% | |
| GTGAAAAAACGTATCTAAAC+AGG | + | chr3_3:43885234-43885253 | None:intergenic | 30.0% | |
| ! | CTTAGATTTTGTGAACACAA+AGG | - | chr3_3:43885361-43885380 | Msa0453500:CDS | 30.0% |
| AACACGTGGCAAATTCTAAT+AGG | - | chr3_3:43880488-43880507 | Msa0453500:three_prime_UTR | 35.0% | |
| ACTAAAGTAGACAAACACAC+TGG | - | chr3_3:43881578-43881597 | Msa0453500:intron | 35.0% | |
| ATTGTTCAGAATTCTGGATC+AGG | - | chr3_3:43881807-43881826 | Msa0453500:intron | 35.0% | |
| GAGAAAGAAGTAGAATAGCT+TGG | - | chr3_3:43881863-43881882 | Msa0453500:intron | 35.0% | |
| ! | ATAATATCTCAAGAAGGTGC+AGG | - | chr3_3:43882062-43882081 | Msa0453500:intron | 35.0% |
| GATATAAATGAATGGCAGTG+TGG | - | chr3_3:43882139-43882158 | Msa0453500:intron | 35.0% | |
| GAAAAGCTGAAAAACCAGTT+TGG | - | chr3_3:43882317-43882336 | Msa0453500:intron | 35.0% | |
| ! | ATGCCTTCAATCTGAAGTAT+CGG | + | chr3_3:43882483-43882502 | None:intergenic | 35.0% |
| AGCTATTAGCAATGAAGCAT+TGG | + | chr3_3:43882625-43882644 | None:intergenic | 35.0% | |
| CTTCATTGCTAATAGCTGAT+AGG | - | chr3_3:43882628-43882647 | Msa0453500:intron | 35.0% | |
| TGCTAACTATTTCCTTGAGA+AGG | - | chr3_3:43882657-43882676 | Msa0453500:CDS | 35.0% | |
| !! | AGAAAGTGGTGTTGCTTTAA+GGG | + | chr3_3:43882847-43882866 | None:intergenic | 35.0% |
| !! | TAGAAAGTGGTGTTGCTTTA+AGG | + | chr3_3:43882848-43882867 | None:intergenic | 35.0% |
| TTAAAACTTGCAAGACGATG+CGG | + | chr3_3:43882873-43882892 | None:intergenic | 35.0% | |
| TTCTAGATCAATACAGGATG+TGG | + | chr3_3:43882986-43883005 | None:intergenic | 35.0% | |
| ! | CTTTAAGGAAAAACACCTGT+TGG | - | chr3_3:43883018-43883037 | Msa0453500:intron | 35.0% |
| !!! | GCACTTTGATTTTTTTGACC+CGG | + | chr3_3:43883227-43883246 | None:intergenic | 35.0% |
| !! | TAGTTGTTTTCCAGTTAACG+AGG | - | chr3_3:43883372-43883391 | Msa0453500:intron | 35.0% |
| !! | AGTTGTTTTCCAGTTAACGA+GGG | - | chr3_3:43883373-43883392 | Msa0453500:intron | 35.0% |
| ! | GTAGCGGAATTTGAATAAAG+TGG | - | chr3_3:43883755-43883774 | Msa0453500:intron | 35.0% |
| AAAATCTAAAGAGGGTCCTA+TGG | + | chr3_3:43883988-43884007 | None:intergenic | 35.0% | |
| GAGAGACAGAAAATCTAAAG+AGG | + | chr3_3:43883997-43884016 | None:intergenic | 35.0% | |
| AACAATGGACATGTTTGGAT+TGG | - | chr3_3:43884143-43884162 | Msa0453500:intron | 35.0% | |
| ACAACCTCTTGTGTAAAACA+GGG | + | chr3_3:43884529-43884548 | None:intergenic | 35.0% | |
| AACAACCTCTTGTGTAAAAC+AGG | + | chr3_3:43884530-43884549 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGGGCGCAAC+TGG | + | chr3_3:43884600-43884619 | None:intergenic | 35.0% |
| AATTCCAGTGATTTAGTCGA+TGG | - | chr3_3:43884656-43884675 | Msa0453500:intron | 35.0% | |
| CTATACAGTTCCTGTGAAAT+CGG | - | chr3_3:43884683-43884702 | Msa0453500:intron | 35.0% | |
| CAACATCACAAGAAAAATGG+AGG | + | chr3_3:43884792-43884811 | None:intergenic | 35.0% | |
| CAGCAACATCACAAGAAAAA+TGG | + | chr3_3:43884795-43884814 | None:intergenic | 35.0% | |
| ! | CATTTTTCTTGTGATGTTGC+TGG | - | chr3_3:43884793-43884812 | Msa0453500:intron | 35.0% |
| ! | TGCTATTTGCAAGTGAAAGT+TGG | - | chr3_3:43885123-43885142 | Msa0453500:intron | 35.0% |
| TATTTGCAAGTGAAAGTTGG+AGG | - | chr3_3:43885126-43885145 | Msa0453500:intron | 35.0% | |
| !!! | TGATTTTCAAGTTGGCTATG+TGG | + | chr3_3:43885162-43885181 | None:intergenic | 35.0% |
| AGCCGAATTCATTGTATACT+TGG | - | chr3_3:43885206-43885225 | Msa0453500:intron | 35.0% | |
| ACAAAATCTAAGCCTGTGTT+TGG | + | chr3_3:43885353-43885372 | None:intergenic | 35.0% | |
| ATGAAAATAGCCAATCAACG+TGG | + | chr3_3:43885404-43885423 | None:intergenic | 35.0% | |
| ! | CTTCTTGCATAGACTTGGTT+TGG | + | chr3_3:43880549-43880568 | None:intergenic | 40.0% |
| AGATGCTTCTTGCATAGACT+TGG | + | chr3_3:43880554-43880573 | None:intergenic | 40.0% | |
| ! | GGTTTGGTTTCAACGATTTG+TGG | - | chr3_3:43880683-43880702 | Msa0453500:three_prime_UTR | 40.0% |
| ! | TGGTGTTCTTGTTGCTTACA+AGG | - | chr3_3:43880703-43880722 | Msa0453500:three_prime_UTR | 40.0% |
| CTTACATCATCATCAGTGTG+TGG | + | chr3_3:43880741-43880760 | None:intergenic | 40.0% | |
| ATTGGAGTTGTGTAGTGACT+TGG | - | chr3_3:43881040-43881059 | Msa0453500:CDS | 40.0% | |
| TTGCAGCATCTGAATCTACA+TGG | + | chr3_3:43881320-43881339 | None:intergenic | 40.0% | |
| ATGTAGATTCAGATGCTGCA+AGG | - | chr3_3:43881319-43881338 | Msa0453500:intron | 40.0% | |
| AATGTAGCTACATAGGTCAG+TGG | - | chr3_3:43881655-43881674 | Msa0453500:intron | 40.0% | |
| ! | CTTGTGCTTTTCTTGCTTGT+CGG | - | chr3_3:43881758-43881777 | Msa0453500:intron | 40.0% |
| ! | CTTTTCTTGCTTGTCGGAAT+TGG | - | chr3_3:43881764-43881783 | Msa0453500:intron | 40.0% |
| CTAAGCTTCAAAGCTGATAG+TGG | - | chr3_3:43882449-43882468 | Msa0453500:intron | 40.0% | |
| !! | TCAAAGCTGATAGTGGATGA+AGG | - | chr3_3:43882456-43882475 | Msa0453500:intron | 40.0% |
| AAGGCATGTTTGACATGTGT+CGG | - | chr3_3:43882496-43882515 | Msa0453500:CDS | 40.0% | |
| !! | TTAGCAATGAAGCATTGGCA+CGG | + | chr3_3:43882620-43882639 | None:intergenic | 40.0% |
| ACACCTGTTGGAGTTATTTG+CGG | - | chr3_3:43883030-43883049 | Msa0453500:intron | 40.0% | |
| TTACCGCAAATAACTCCAAC+AGG | + | chr3_3:43883036-43883055 | None:intergenic | 40.0% | |
| TTTCGGTAGATTTCCCTAGT+CGG | - | chr3_3:43883103-43883122 | Msa0453500:intron | 40.0% | |
| GTTGAATCCAGAAAGAAAGC+CGG | - | chr3_3:43883152-43883171 | Msa0453500:intron | 40.0% | |
| ! | ATATGTGAGGTGTGTGCTTT+TGG | - | chr3_3:43883277-43883296 | Msa0453500:intron | 40.0% |
| ! | TGGAAAACAACTATCGGCTA+TGG | + | chr3_3:43883365-43883384 | None:intergenic | 40.0% |
| ATGTCAAATAGTGGCTAGAG+CGG | - | chr3_3:43883715-43883734 | Msa0453500:intron | 40.0% | |
| TCAAATTCCGCTACACAACA+GGG | + | chr3_3:43883749-43883768 | None:intergenic | 40.0% | |
| TTCAAATTCCGCTACACAAC+AGG | + | chr3_3:43883750-43883769 | None:intergenic | 40.0% | |
| TTTGCAGCTTATAGCACAAG+CGG | + | chr3_3:43884389-43884408 | None:intergenic | 40.0% | |
| ! | TTTTTGATATTGGGCCTGTG+TGG | + | chr3_3:43884424-43884443 | None:intergenic | 40.0% |
| ACACAGGCCCAATATCAAAA+AGG | - | chr3_3:43884423-43884442 | Msa0453500:intron | 40.0% | |
| CACAGGCCCAATATCAAAAA+GGG | - | chr3_3:43884424-43884443 | Msa0453500:intron | 40.0% | |
| ! | GGGTTGCCCTTTTTGATATT+GGG | + | chr3_3:43884433-43884452 | None:intergenic | 40.0% |
| CAATATCAAAAAGGGCAACC+CGG | - | chr3_3:43884432-43884451 | Msa0453500:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | chr3_3:43884498-43884517 | None:intergenic | 40.0% | |
| CTCTTGTGTAAAACAGGGTA+AGG | + | chr3_3:43884524-43884543 | None:intergenic | 40.0% | |
| ! | CTTACCCTGTTTTACACAAG+AGG | - | chr3_3:43884522-43884541 | Msa0453500:intron | 40.0% |
| ! | TTACACAAGAGGTTGTTTCC+AGG | - | chr3_3:43884533-43884552 | Msa0453500:intron | 40.0% |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr3_3:43884573-43884592 | None:intergenic | 40.0% | |
| CTATTGTAACGGTTCCAACA+AGG | - | chr3_3:43884897-43884916 | Msa0453500:intron | 40.0% | |
| ! | ACAGGTTGAGAGCTTCTAAA+GGG | + | chr3_3:43885026-43885045 | None:intergenic | 40.0% |
| ! | AACAGGTTGAGAGCTTCTAA+AGG | + | chr3_3:43885027-43885046 | None:intergenic | 40.0% |
| TCGAAAAGGCTACTAACATG+CGG | + | chr3_3:43885323-43885342 | None:intergenic | 40.0% | |
| AAGATTGGATCCACGTTGAT+TGG | - | chr3_3:43885391-43885410 | Msa0453500:exon | 40.0% | |
| TGTGCATGACATCACTAACA+AGG | - | chr3_3:43885429-43885448 | Msa0453500:five_prime_UTR | 40.0% | |
| GTGCATGACATCACTAACAA+GGG | - | chr3_3:43885430-43885449 | Msa0453500:five_prime_UTR | 40.0% | |
| TTGGTACCAGAAAACCTCTG+TGG | + | chr3_3:43880530-43880549 | None:intergenic | 45.0% | |
| ACGCCTTCAATCAGAACTGT+CGG | - | chr3_3:43881701-43881720 | Msa0453500:intron | 45.0% | |
| CTTGCTTGTCGGAATTGGTA+TGG | - | chr3_3:43881769-43881788 | Msa0453500:intron | 45.0% | |
| AGCTTGGAAGATCGTTCAAG+AGG | - | chr3_3:43881879-43881898 | Msa0453500:intron | 45.0% | |
| GCAGTATTTGACGCCATTTG+TGG | - | chr3_3:43882027-43882046 | Msa0453500:intron | 45.0% | |
| GGACCGATACTTCAGATTGA+AGG | - | chr3_3:43882477-43882496 | Msa0453500:intron | 45.0% | |
| TACAAGTGTCAGTGTCGTGT+AGG | + | chr3_3:43882523-43882542 | None:intergenic | 45.0% | |
| !! | TCCTTGAGAAGGTACCATCT+TGG | - | chr3_3:43882668-43882687 | Msa0453500:CDS | 45.0% |
| TCCAAGATGGTACCTTCTCA+AGG | + | chr3_3:43882672-43882691 | None:intergenic | 45.0% | |
| GAGCTCAGAAAAGTCCAAGA+TGG | + | chr3_3:43882685-43882704 | None:intergenic | 45.0% | |
| AACACACTTGAGTCATGTCC+TGG | - | chr3_3:43882730-43882749 | Msa0453500:intron | 45.0% | |
| AGACGATGCGGAATAGAAAG+TGG | + | chr3_3:43882861-43882880 | None:intergenic | 45.0% | |
| CACATACATCTGCTAAGCAC+CGG | + | chr3_3:43883174-43883193 | None:intergenic | 45.0% | |
| ! | TTATTTCTTGCTGCAGCAGC+AGG | + | chr3_3:43883253-43883272 | None:intergenic | 45.0% |
| GTTATAGCCCTGTTGTGTAG+CGG | - | chr3_3:43883739-43883758 | Msa0453500:intron | 45.0% | |
| GTGGTATATTCTGCGATCTG+CGG | - | chr3_3:43883774-43883793 | Msa0453500:intron | 45.0% | |
| CTACCTCCGTTCTTAACCAT+AGG | - | chr3_3:43883969-43883988 | Msa0453500:CDS | 45.0% | |
| GAGGGTCCTATGGTTAAGAA+CGG | + | chr3_3:43883978-43883997 | None:intergenic | 45.0% | |
| ! | CGGGTTGCCCTTTTTGATAT+TGG | + | chr3_3:43884434-43884453 | None:intergenic | 45.0% |
| GCGTACAATACACCAAATGG+TGG | + | chr3_3:43884499-43884518 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | chr3_3:43884502-43884521 | None:intergenic | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr3_3:43884566-43884585 | None:intergenic | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr3_3:43884567-43884586 | None:intergenic | 45.0% | |
| ! | CATGCCATCGACTAAATCAC+TGG | + | chr3_3:43884663-43884682 | None:intergenic | 45.0% |
| ! | ACAAGTGCAACCGATTTCAC+AGG | + | chr3_3:43884696-43884715 | None:intergenic | 45.0% |
| !!! | TGATGGCTTCTTTTTTCGGC+CGG | + | chr3_3:43884987-43885006 | None:intergenic | 45.0% |
| TTGCAAGTGAAAGTTGGAGG+AGG | - | chr3_3:43885129-43885148 | Msa0453500:intron | 45.0% | |
| TGAAAGTTGGAGGAGGAAAG+CGG | - | chr3_3:43885136-43885155 | Msa0453500:intron | 45.0% | |
| ! | TGTTAGTAGCCTTTTCGACG+TGG | - | chr3_3:43885325-43885344 | Msa0453500:CDS | 45.0% |
| ! | TGTTTGGAACCACGTCGAAA+AGG | + | chr3_3:43885337-43885356 | None:intergenic | 45.0% |
| !! | AATCAAAATAAAAATTTAAA+AGG | + | chr3_3:43884031-43884050 | None:intergenic | 5.0% |
| TCTAATAGGCCACTGTGTCG+TGG | - | chr3_3:43880502-43880521 | Msa0453500:three_prime_UTR | 50.0% | |
| ! | GTGGTTCCACAGAGGTTTTC+TGG | - | chr3_3:43880521-43880540 | Msa0453500:three_prime_UTR | 50.0% |
| TGGCGATCTTATTATCGCCG+TGG | - | chr3_3:43881492-43881511 | Msa0453500:intron | 50.0% | |
| ! | GTTCTGATTGAAGGCGTGTC+AGG | + | chr3_3:43881698-43881717 | None:intergenic | 50.0% |
| ! | GCACCGACAGTTCTGATTGA+AGG | + | chr3_3:43881707-43881726 | None:intergenic | 50.0% |
| ATTCTGGATCAGGAGCAGAG+TGG | - | chr3_3:43881817-43881836 | Msa0453500:intron | 50.0% | |
| !! | TGAAGCATTGGCACGGACAT+TGG | + | chr3_3:43882613-43882632 | None:intergenic | 50.0% |
| !! | CTAAGCACCGGCTTTCTTTC+TGG | + | chr3_3:43883162-43883181 | None:intergenic | 50.0% |
| CGGTGCTTAGCAGATGTATG+TGG | - | chr3_3:43883172-43883191 | Msa0453500:intron | 50.0% | |
| TCAAATTACCCTGCGTCCTC+TGG | + | chr3_3:43883570-43883589 | None:intergenic | 50.0% | |
| ATTCTGCGATCTGCGGTTGA+TGG | - | chr3_3:43883781-43883800 | Msa0453500:intron | 50.0% | |
| GGTCCTATGGTTAAGAACGG+AGG | + | chr3_3:43883975-43883994 | None:intergenic | 50.0% | |
| TTTCCCGAACCCTGCATATG+CGG | + | chr3_3:43884471-43884490 | None:intergenic | 50.0% | |
| CATATGCAGGGTTCGGGAAA+GGG | - | chr3_3:43884471-43884490 | Msa0453500:intron | 50.0% | |
| CACATTCTCACGTCCCAATG+TGG | - | chr3_3:43885251-43885270 | Msa0453500:intron | 50.0% | |
| TTCGACGTGGTTCCAAACAC+AGG | - | chr3_3:43885338-43885357 | Msa0453500:CDS | 50.0% | |
| TCTGTGGAACCACGACACAG+TGG | + | chr3_3:43880514-43880533 | None:intergenic | 55.0% | |
| ACTGTGTCGTGGTTCCACAG+AGG | - | chr3_3:43880513-43880532 | Msa0453500:three_prime_UTR | 55.0% | |
| TGTGATGCTCACAGCTGCAC+TGG | - | chr3_3:43883527-43883546 | Msa0453500:intron | 55.0% | |
| CGTGGAAAGCCTTTCTCCAG+AGG | - | chr3_3:43883551-43883570 | Msa0453500:intron | 55.0% | |
| ACTAGAGCTCCCGCATATGC+AGG | - | chr3_3:43884458-43884477 | Msa0453500:intron | 55.0% | |
| CTAGAGCTCCCGCATATGCA+GGG | - | chr3_3:43884459-43884478 | Msa0453500:intron | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | + | chr3_3:43884470-43884489 | None:intergenic | 55.0% | |
| GCATATGCAGGGTTCGGGAA+AGG | - | chr3_3:43884470-43884489 | Msa0453500:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr3_3:43884554-43884573 | None:intergenic | 55.0% | |
| TCTCACGTCCCAATGTGGTG+TGG | - | chr3_3:43885256-43885275 | Msa0453500:intron | 55.0% | |
| ATCCACGGCCACACCACATT+GGG | + | chr3_3:43885267-43885286 | None:intergenic | 55.0% | |
| AATCCACGGCCACACCACAT+TGG | + | chr3_3:43885268-43885287 | None:intergenic | 55.0% | |
| GCTGCAGGACCCTCGTTAAC+TGG | + | chr3_3:43883385-43883404 | None:intergenic | 60.0% | |
| AGCCTTTCTCCAGAGGACGC+AGG | - | chr3_3:43883558-43883577 | Msa0453500:intron | 60.0% | |
| GCCTTTCTCCAGAGGACGCA+GGG | - | chr3_3:43883559-43883578 | Msa0453500:intron | 60.0% | |
| ! | ACCCTGCGTCCTCTGGAGAA+AGG | + | chr3_3:43883563-43883582 | None:intergenic | 60.0% |
| ! | ATGCGGGAGCTCTAGTGCAC+CGG | + | chr3_3:43884454-43884473 | None:intergenic | 60.0% |
| GCTCCCGCATATGCAGGGTT+CGG | - | chr3_3:43884464-43884483 | Msa0453500:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | - | chr3_3:43884465-43884484 | Msa0453500:intron | 60.0% | |
| CGGGAAAGGGTCCCACCATT+TGG | - | chr3_3:43884484-43884503 | Msa0453500:intron | 60.0% | |
| GCTCACAGCTGCACTGGACG+TGG | - | chr3_3:43883533-43883552 | Msa0453500:intron | 65.0% | |
| ! | TGCGGGAGCTCTAGTGCACC+GGG | + | chr3_3:43884453-43884472 | None:intergenic | 65.0% |
| GTCCCAATGTGGTGTGGCCG+TGG | - | chr3_3:43885262-43885281 | Msa0453500:intron | 65.0% | |
| ACGAGGGTCCTGCAGCGAGC+CGG | - | chr3_3:43883389-43883408 | Msa0453500:intron | 70.0% | |
| !! | CCATGAAGCCGGCTCGCTGC+AGG | + | chr3_3:43883400-43883419 | None:intergenic | 70.0% |
| ! | CCTGCAGCGAGCCGGCTTCA+TGG | - | chr3_3:43883397-43883416 | Msa0453500:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 43880482 | 43885582 | 43880482 | ID=Msa0453500;Name=Msa0453500 |
| chr3_3 | mRNA | 43880482 | 43885582 | 43880482 | ID=Msa0453500-mRNA-1;Parent=Msa0453500;Name=Msa0453500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=187|0.87|0.88|1|1|1|9|382|325 |
| chr3_3 | exon | 43880482 | 43881124 | 43880482 | ID=Msa0453500-mRNA-1:exon:8007;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43881250 | 43881303 | 43881250 | ID=Msa0453500-mRNA-1:exon:8006;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43882484 | 43882557 | 43882484 | ID=Msa0453500-mRNA-1:exon:8005;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43882646 | 43882703 | 43882646 | ID=Msa0453500-mRNA-1:exon:8004;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43882779 | 43882901 | 43882779 | ID=Msa0453500-mRNA-1:exon:8003;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43883824 | 43884033 | 43883824 | ID=Msa0453500-mRNA-1:exon:8002;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43884164 | 43884248 | 43884164 | ID=Msa0453500-mRNA-1:exon:8001;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43884724 | 43884749 | 43884724 | ID=Msa0453500-mRNA-1:exon:8000;Parent=Msa0453500-mRNA-1 |
| chr3_3 | exon | 43885309 | 43885582 | 43885309 | ID=Msa0453500-mRNA-1:exon:7999;Parent=Msa0453500-mRNA-1 |
| chr3_3 | five_prime_UTR | 43885396 | 43885582 | 43885396 | ID=Msa0453500-mRNA-1:five_prime_utr;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43885309 | 43885395 | 43885309 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43884724 | 43884749 | 43884724 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43884164 | 43884248 | 43884164 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43883824 | 43884033 | 43883824 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43882779 | 43882901 | 43882779 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43882646 | 43882703 | 43882646 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43882484 | 43882557 | 43882484 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43881250 | 43881303 | 43881250 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | CDS | 43880864 | 43881124 | 43880864 | ID=Msa0453500-mRNA-1:cds;Parent=Msa0453500-mRNA-1 |
| chr3_3 | three_prime_UTR | 43880482 | 43880863 | 43880482 | ID=Msa0453500-mRNA-1:three_prime_utr;Parent=Msa0453500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
