AlfalfaGEDB | Msa0276960

M. sativa cultivar zhongmu-4 / Msa0276960

KEGG: K22139
GO: -
PFAM: PF03650.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276960	XP_003594195.1	98.113	106	2	0	1	106	1	106	9.99e-72	218

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276960	sp\|O49636\|MPC4_ARATH	86.000	100	14	0	1	100	1	100	2.20e-63	190

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276960	Q2HVG1	98.113	106	2	0	1	106	1	106	4.77e-72	218

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0276960	Msa0453500	0.812326	4.484069e-51	-8.615850e-47
Msa0276960	Msa0526720	0.803440	3.482066e-49	-8.615850e-47
Msa0276960	Msa0819540	0.811880	5.610796e-51	-8.615850e-47
Msa0276960	Msa1131170	0.805967	1.033711e-49	-8.615850e-47
Msa0276960	Msa1206090	0.806410	8.337722e-50	-8.615850e-47
Msa0276960	Msa1256950	0.808814	2.573553e-50	-8.615850e-47
Msa0276960	Msa1329540	0.814548	1.456988e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276960	MtrunA17_Chr2g0289651	98.113	106	2	1	106	1	106	9.19e-76	218
Msa0276960	MtrunA17_Chr2g0289641	68.868	106	33	1	106	1	106	8.17e-55	166
Msa0276960	MtrunA17_Chr1g0210881	36.634	101	64	6	106	4	104	1.47e-18	74.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0276960	AT4G22310.1	86.000	100	14	0	1	100	1	100	2.23e-64	190
Msa0276960	AT4G14695.3	77.778	108	22	1	1	106	1	108	1.97e-60	180
Msa0276960	AT4G14695.1	77.778	108	22	1	1	106	1	108	1.97e-60	180
Msa0276960	AT4G05590.1	80.000	100	20	0	1	100	1	100	5.84e-60	179
Msa0276960	AT4G05590.2	57.971	138	20	1	1	100	1	138	9.31e-53	162
Msa0276960	AT4G05590.3	88.406	69	8	0	1	69	1	69	1.50e-42	134
Msa0276960	AT4G14695.2	61.111	108	22	2	1	106	1	90	4.74e-41	130
Msa0276960	AT5G20090.2	41.121	107	62	1	1	106	1	107	2.76e-22	84.3
Msa0276960	AT5G20090.1	41.121	107	62	1	1	106	1	107	2.76e-22	84.3
Msa0276960	AT5G20090.4	41.121	107	62	1	1	106	1	107	2.76e-22	84.3

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Find 36 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATAAATAAATAAAA+AGG	0.168142	2_3:-9290719	None:intergenic
AAATCGAATTCGCTTTCAAT+CGG	0.496062	2_3:+9287448	Msa0276960:five_prime_UTR
AACGTTGCAATGGCAGGAAC+TGG	0.478710	2_3:+9290085	Msa0276960:CDS
ACCAACTGTCACGCAAATTG+CGG	0.595594	2_3:+9290113	Msa0276960:CDS
ACCGCAATTTGCGTGACAGT+TGG	0.577855	2_3:-9290114	None:intergenic
AGGGGATGAGTTACGGCAGA+TGG	0.499309	2_3:-9290699	None:intergenic
ATAATATAGTTTGCAAGTGG+TGG	0.572798	2_3:+9287414	Msa0276960:five_prime_UTR
ATATATTTGAAATTTCATTT+TGG	0.208618	2_3:+9290648	Msa0276960:three_prime_UTR
ATGCGCATACCTATTTGTTG+AGG	0.604492	2_3:-9289067	None:intergenic
ATTGAAAGCGAATTCGATTT+GGG	0.343126	2_3:-9287445	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAAGCGAATTCGATTT+GGG	-	chr2_3:9287448-9287467	None:intergenic	30.0%
AAATCGAATTCGCTTTCAAT+CGG	+	chr2_3:9287448-9287467	Msa0276960:five_prime_UTR	30.0%
GAACGATTCATTTCATTTCA+TGG	+	chr2_3:9287486-9287505	Msa0276960:exon	30.0%
CTGCTATGGATATATAAGAT+CGG	-	chr2_3:9287648-9287667	None:intergenic	30.0%
CTGATGTTATTAAACAGAGA+TGG	+	chr2_3:9288045-9288064	Msa0276960:intron	30.0%
CCATGAAAGATAAACAAACT+AGG	+	chr2_3:9288154-9288173	Msa0276960:intron	30.0%
TTACCCACTTATTAGCAATT+TGG	+	chr2_3:9288587-9288606	Msa0276960:intron	30.0%
AGACCAAATTGCTAATAAGT+GGG	-	chr2_3:9288593-9288612	None:intergenic	30.0%
TTAGCCACAAACTATCAATT+TGG	+	chr2_3:9288619-9288638	Msa0276960:intron	30.0%
GGTGAAAAATGCAATCTATT+TGG	-	chr2_3:9288847-9288866	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	9287391	9290821	9287391	ID=Msa0276960;Name=Msa0276960
chr2_3	mRNA	9287391	9290821	9287391	ID=Msa0276960-mRNA-1;Parent=Msa0276960;Name=Msa0276960-mRNA-1;_AED=0.36;_eAED=0.36;_QI=114\|1\|1\|1\|1\|1\|5\|250\|106
chr2_3	exon	9287391	9287559	9287391	ID=Msa0276960-mRNA-1:exon:4247;Parent=Msa0276960-mRNA-1
chr2_3	exon	9288981	9289079	9288981	ID=Msa0276960-mRNA-1:exon:4248;Parent=Msa0276960-mRNA-1
chr2_3	exon	9289298	9289350	9289298	ID=Msa0276960-mRNA-1:exon:4249;Parent=Msa0276960-mRNA-1
chr2_3	exon	9290061	9290134	9290061	ID=Msa0276960-mRNA-1:exon:4250;Parent=Msa0276960-mRNA-1
chr2_3	exon	9290532	9290821	9290532	ID=Msa0276960-mRNA-1:exon:4251;Parent=Msa0276960-mRNA-1
chr2_3	five_prime_UTR	9287391	9287504	9287391	ID=Msa0276960-mRNA-1:five_prime_utr;Parent=Msa0276960-mRNA-1
chr2_3	CDS	9287505	9287559	9287505	ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1
chr2_3	CDS	9288981	9289079	9288981	ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1
chr2_3	CDS	9289298	9289350	9289298	ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1
chr2_3	CDS	9290061	9290134	9290061	ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1
chr2_3	CDS	9290532	9290571	9290532	ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1
chr2_3	three_prime_UTR	9290572	9290821	9290572	ID=Msa0276960-mRNA-1:three_prime_utr;Parent=Msa0276960-mRNA-1

Gene Sequence	>Msa0276960 ATGGCGACTTCAAAGCTTCAAGCTTTTTGGAATCATCCAGCTGGTCCCAAAACCATTCACTTTTGGGCACCTACATTTAAGTGGGGTATCAGCATTGCCAATGTTGCTGATTTTGCAAAACCACCAGAGAAGCTTTCCTATCCTCAACAAATAGCTGTTACAGCTACTGGACTTATCTGGTCACGTTACAGCACAGTAATCACTCCAAAAAATTGGAACCTTTTTGCTGTGAACGTTGCAATGGCAGGAACTGGCCTATACCAACTGTCACGCAAATTGCGGCAAGATTATTCGTCAGAGAAGGCTATAGAAAAAGAATGA
Protein sequence	>Msa0276960 MATSKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKLSYPQQIAVTATGLIWSRYSTVITPKNWNLFAVNVAMAGTGLYQLSRKLRQDYSSEKAIEKE*