Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276960 | XP_003594195.1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 9.99e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276960 | sp|O49636|MPC4_ARATH | 86.000 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 2.20e-63 | 190 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276960 | Q2HVG1 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 4.77e-72 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0276960 | Msa0453500 | 0.812326 | 4.484069e-51 | -8.615850e-47 |
| Msa0276960 | Msa0526720 | 0.803440 | 3.482066e-49 | -8.615850e-47 |
| Msa0276960 | Msa0819540 | 0.811880 | 5.610796e-51 | -8.615850e-47 |
| Msa0276960 | Msa1131170 | 0.805967 | 1.033711e-49 | -8.615850e-47 |
| Msa0276960 | Msa1206090 | 0.806410 | 8.337722e-50 | -8.615850e-47 |
| Msa0276960 | Msa1256950 | 0.808814 | 2.573553e-50 | -8.615850e-47 |
| Msa0276960 | Msa1329540 | 0.814548 | 1.456988e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276960 | MtrunA17_Chr2g0289651 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 9.19e-76 | 218 |
| Msa0276960 | MtrunA17_Chr2g0289641 | 68.868 | 106 | 33 | 0 | 1 | 106 | 1 | 106 | 8.17e-55 | 166 |
| Msa0276960 | MtrunA17_Chr1g0210881 | 36.634 | 101 | 64 | 0 | 6 | 106 | 4 | 104 | 1.47e-18 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0276960 | AT4G22310.1 | 86.000 | 100 | 14 | 0 | 1 | 100 | 1 | 100 | 2.23e-64 | 190 |
| Msa0276960 | AT4G14695.3 | 77.778 | 108 | 22 | 1 | 1 | 106 | 1 | 108 | 1.97e-60 | 180 |
| Msa0276960 | AT4G14695.1 | 77.778 | 108 | 22 | 1 | 1 | 106 | 1 | 108 | 1.97e-60 | 180 |
| Msa0276960 | AT4G05590.1 | 80.000 | 100 | 20 | 0 | 1 | 100 | 1 | 100 | 5.84e-60 | 179 |
| Msa0276960 | AT4G05590.2 | 57.971 | 138 | 20 | 1 | 1 | 100 | 1 | 138 | 9.31e-53 | 162 |
| Msa0276960 | AT4G05590.3 | 88.406 | 69 | 8 | 0 | 1 | 69 | 1 | 69 | 1.50e-42 | 134 |
| Msa0276960 | AT4G14695.2 | 61.111 | 108 | 22 | 2 | 1 | 106 | 1 | 90 | 4.74e-41 | 130 |
| Msa0276960 | AT5G20090.2 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0276960 | AT5G20090.1 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0276960 | AT5G20090.4 | 41.121 | 107 | 62 | 1 | 1 | 106 | 1 | 107 | 2.76e-22 | 84.3 |
| Msa0276960 | AT5G20090.3 | 41.489 | 94 | 55 | 0 | 1 | 94 | 1 | 94 | 6.38e-21 | 80.5 |
Find 36 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAAATAAATAAATAAAA+AGG | 0.168142 | 2_3:-9290719 | None:intergenic |
| ATATATTTGAAATTTCATTT+TGG | 0.208618 | 2_3:+9290648 | Msa0276960:three_prime_UTR |
| GCGAAGTAACTCACTGGTTT+TGG | 0.214027 | 2_3:-9287551 | None:intergenic |
| GAACGATTCATTTCATTTCA+TGG | 0.268538 | 2_3:+9287486 | Msa0276960:exon |
| GATTGAAAGCGAATTCGATT+TGG | 0.287257 | 2_3:-9287446 | None:intergenic |
| TATCAAGTTATTTGTGTACT+TGG | 0.339842 | 2_3:+9290590 | Msa0276960:three_prime_UTR |
| ATTGAAAGCGAATTCGATTT+GGG | 0.343126 | 2_3:-9287445 | None:intergenic |
| CTTTCCTATCCTCAACAAAT+AGG | 0.357519 | 2_3:+9289058 | Msa0276960:CDS |
| TTGCAACGTTCACAGCAAAA+AGG | 0.357937 | 2_3:-9290072 | None:intergenic |
| TGAGGATAGGAAAGCTTCTC+TGG | 0.382144 | 2_3:-9289049 | None:intergenic |
| ATTTGCGTGACAGTTGGTAT+AGG | 0.405723 | 2_3:-9290108 | None:intergenic |
| GACACAGCTGTTACAGCTAC+TGG | 0.418439 | 2_3:+9289291 | Msa0276960:intron |
| TTACAGCTACTGGACTTATC+TGG | 0.420347 | 2_3:+9289301 | Msa0276960:CDS |
| CAAAAGCACAGGTCTTAACT+TGG | 0.425631 | 2_3:-9290789 | None:intergenic |
| CAACATGAAAATTGCAATCC+AGG | 0.446735 | 2_3:-9290622 | None:intergenic |
| AACGTTGCAATGGCAGGAAC+TGG | 0.478710 | 2_3:+9290085 | Msa0276960:CDS |
| TGTACTTGGAGCTCGATACC+TGG | 0.488738 | 2_3:+9290604 | Msa0276960:three_prime_UTR |
| CTGATACCCCACTTAAATGT+AGG | 0.491087 | 2_3:-9288995 | None:intergenic |
| AAATCGAATTCGCTTTCAAT+CGG | 0.496062 | 2_3:+9287448 | Msa0276960:five_prime_UTR |
| AGGGGATGAGTTACGGCAGA+TGG | 0.499309 | 2_3:-9290699 | None:intergenic |
| TTTGGGCACCTACATTTAAG+TGG | 0.501597 | 2_3:+9288987 | Msa0276960:CDS |
| CATACCTATTTGTTGAGGAT+AGG | 0.535886 | 2_3:-9289062 | None:intergenic |
| TTGGGCACCTACATTTAAGT+GGG | 0.548150 | 2_3:+9288988 | Msa0276960:CDS |
| GCTGTGAACGTTGCAATGGC+AGG | 0.549298 | 2_3:+9290079 | Msa0276960:CDS |
| TGACATTCCTTCAAAAGCAC+AGG | 0.561077 | 2_3:-9290800 | None:intergenic |
| ATAATATAGTTTGCAAGTGG+TGG | 0.572798 | 2_3:+9287414 | Msa0276960:five_prime_UTR |
| ACCGCAATTTGCGTGACAGT+TGG | 0.577855 | 2_3:-9290114 | None:intergenic |
| ACCAACTGTCACGCAAATTG+CGG | 0.595594 | 2_3:+9290113 | Msa0276960:CDS |
| ATGCGCATACCTATTTGTTG+AGG | 0.604492 | 2_3:-9289067 | None:intergenic |
| GCAAGATTATTCGTCAGAGA+AGG | 0.608255 | 2_3:+9290532 | Msa0276960:CDS |
| TGCAAAGAAGACTTACAACA+AGG | 0.615838 | 2_3:-9290759 | None:intergenic |
| CAAATAATATAGTTTGCAAG+TGG | 0.621929 | 2_3:+9287411 | Msa0276960:five_prime_UTR |
| GGATGAGTTACGGCAGATGG+AGG | 0.622804 | 2_3:-9290696 | None:intergenic |
| GGATAGGAAAGCTTCTCTGG+TGG | 0.644326 | 2_3:-9289046 | None:intergenic |
| GCAAAGAAGACTTACAACAA+GGG | 0.649985 | 2_3:-9290758 | None:intergenic |
| TGGGCACCTACATTTAAGTG+GGG | 0.659300 | 2_3:+9288989 | Msa0276960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAAATAAAAA+GGG | - | chr2_3:9290721-9290740 | None:intergenic | 0.0% |
| !! | AAATAAATAAATAAATAAAA+AGG | - | chr2_3:9290722-9290741 | None:intergenic | 0.0% |
| !!! | ATATATTTGAAATTTCATTT+TGG | + | chr2_3:9290648-9290667 | Msa0276960:three_prime_UTR | 10.0% |
| !!! | TATATTTGAAATTTCATTTT+GGG | + | chr2_3:9290649-9290668 | Msa0276960:three_prime_UTR | 10.0% |
| !! | AATCGAAAAAAAAAAAACTT+AGG | - | chr2_3:9287728-9287747 | None:intergenic | 15.0% |
| !!! | TAAAAATTGGATCATTTTTA+GGG | + | chr2_3:9287775-9287794 | Msa0276960:intron | 15.0% |
| !!! | TAACTTTGTATATATGATTT+TGG | - | chr2_3:9288071-9288090 | None:intergenic | 15.0% |
| !! | AAATCATATATACAAAGTTA+TGG | + | chr2_3:9288071-9288090 | Msa0276960:intron | 15.0% |
| !!! | TTTACTGTATTTCTATAATA+TGG | + | chr2_3:9288447-9288466 | Msa0276960:intron | 15.0% |
| !!! | AGAAATATACATTTTCAAAA+GGG | - | chr2_3:9289132-9289151 | None:intergenic | 15.0% |
| !! | TTCATAAATAAAAACACGAA+TGG | - | chr2_3:9287596-9287615 | None:intergenic | 20.0% |
| !! | TTTGTTTGCTTTGTAAAAAT+TGG | + | chr2_3:9287762-9287781 | Msa0276960:intron | 20.0% |
| !!! | GTAAAAATTGGATCATTTTT+AGG | + | chr2_3:9287774-9287793 | Msa0276960:intron | 20.0% |
| !! | ACTTATTATTATCAAAGATC+TGG | + | chr2_3:9287883-9287902 | Msa0276960:intron | 20.0% |
| !! | CTTATTATTATCAAAGATCT+GGG | + | chr2_3:9287884-9287903 | Msa0276960:intron | 20.0% |
| !!! | TAACTTTGTATCTATGATTT+TGG | + | chr2_3:9288472-9288491 | Msa0276960:intron | 20.0% |
| !! | ATAAAAGTGGTTAAATATAG+GGG | - | chr2_3:9288549-9288568 | None:intergenic | 20.0% |
| !! | GATAAAAGTGGTTAAATATA+GGG | - | chr2_3:9288550-9288569 | None:intergenic | 20.0% |
| !! | TGATAAAAGTGGTTAAATAT+AGG | - | chr2_3:9288551-9288570 | None:intergenic | 20.0% |
| !! | AAGGATTTAATTGATAAAAG+TGG | - | chr2_3:9288562-9288581 | None:intergenic | 20.0% |
| !!! | CAGAAATATACATTTTCAAA+AGG | - | chr2_3:9289133-9289152 | None:intergenic | 20.0% |
| !!! | ATATTTCTGAATTCTTTGAA+AGG | + | chr2_3:9289144-9289163 | Msa0276960:intron | 20.0% |
| !!! | AAGTTTTGTTGTTTTTTCAA+AGG | + | chr2_3:9289353-9289372 | Msa0276960:intron | 20.0% |
| !! | ATATTTCATGAACAAGTTAA+AGG | - | chr2_3:9289386-9289405 | None:intergenic | 20.0% |
| !! | ATGAAATATAGAAATACTAG+TGG | + | chr2_3:9289397-9289416 | Msa0276960:intron | 20.0% |
| !!! | GTTTTAAGGTTTTTATTTCT+TGG | - | chr2_3:9289765-9289784 | None:intergenic | 20.0% |
| !! | ACAATTAACTAAATGAACTT+TGG | + | chr2_3:9289872-9289891 | Msa0276960:intron | 20.0% |
| !!! | ATCTAGTTTATTTTCTTTAG+TGG | + | chr2_3:9290290-9290309 | Msa0276960:intron | 20.0% |
| !!! | TCTAGTTTATTTTCTTTAGT+GGG | + | chr2_3:9290291-9290310 | Msa0276960:intron | 20.0% |
| !! | AAGGTTAAACTACAAAATAA+AGG | - | chr2_3:9290413-9290432 | None:intergenic | 20.0% |
| !! | AGTTAAGATACATATAAGTA+TGG | - | chr2_3:9290495-9290514 | None:intergenic | 20.0% |
| !! | CAAATAATATAGTTTGCAAG+TGG | + | chr2_3:9287411-9287430 | Msa0276960:five_prime_UTR | 25.0% |
| !!! | ATTTTTAGGGTTGCAAAAAT+GGG | + | chr2_3:9287788-9287807 | Msa0276960:intron | 25.0% |
| !! | TTTTGATACTTTGTGAAACT+TGG | + | chr2_3:9287860-9287879 | Msa0276960:intron | 25.0% |
| ! | CTAAGTAGAGACTAATTTAT+TGG | - | chr2_3:9287977-9287996 | None:intergenic | 25.0% |
| !! | TAAATTAGTCTCTACTTAGT+AGG | + | chr2_3:9287978-9287997 | Msa0276960:intron | 25.0% |
| ! | CATGAAAGATAAACAAACTA+GGG | + | chr2_3:9288155-9288174 | Msa0276960:intron | 25.0% |
| ! | ATATAAACTTCTCTCTATAC+TGG | - | chr2_3:9288274-9288293 | None:intergenic | 25.0% |
| !! | TATATACTGACTATCCAATT+AGG | + | chr2_3:9288291-9288310 | Msa0276960:intron | 25.0% |
| ! | TAATAAGTGGGTAAAACATA+AGG | - | chr2_3:9288581-9288600 | None:intergenic | 25.0% |
| ! | ACTAGTCCTTAGAAATATTA+GGG | - | chr2_3:9288653-9288672 | None:intergenic | 25.0% |
| ! | TACTAGTCCTTAGAAATATT+AGG | - | chr2_3:9288654-9288673 | None:intergenic | 25.0% |
| ! | ATTCCATAATTCATTCACTT+GGG | - | chr2_3:9289180-9289199 | None:intergenic | 25.0% |
| ! | TAGTATATGTTCTCATGTAT+TGG | + | chr2_3:9289227-9289246 | Msa0276960:intron | 25.0% |
| ! | AGTATATGTTCTCATGTATT+GGG | + | chr2_3:9289228-9289247 | Msa0276960:intron | 25.0% |
| ! | GAAAAAACAACAAAACTTAC+TGG | - | chr2_3:9289351-9289370 | None:intergenic | 25.0% |
| ! | TAACTAAGCAACAAAAAAAC+AGG | - | chr2_3:9289639-9289658 | None:intergenic | 25.0% |
| ! | TTACTATGTTGCAGAAAAAT+TGG | + | chr2_3:9290047-9290066 | Msa0276960:intron | 25.0% |
| ! | TTGAATCATAATGTAGCAAA+TGG | - | chr2_3:9290183-9290202 | None:intergenic | 25.0% |
| !!! | TTGTTGATGATATGTTAGTT+TGG | + | chr2_3:9290224-9290243 | Msa0276960:intron | 25.0% |
| ! | AACATCACCAAAATATATCA+TGG | - | chr2_3:9290445-9290464 | None:intergenic | 25.0% |
| ! | CTATAGAAAAAGAATGATGA+CGG | + | chr2_3:9290555-9290574 | Msa0276960:exon | 25.0% |
| ! | TATCAAGTTATTTGTGTACT+TGG | + | chr2_3:9290590-9290609 | Msa0276960:three_prime_UTR | 25.0% |
| ! | ATAATATAGTTTGCAAGTGG+TGG | + | chr2_3:9287414-9287433 | Msa0276960:five_prime_UTR | 30.0% |
| ATTGAAAGCGAATTCGATTT+GGG | - | chr2_3:9287448-9287467 | None:intergenic | 30.0% | |
| AAATCGAATTCGCTTTCAAT+CGG | + | chr2_3:9287448-9287467 | Msa0276960:five_prime_UTR | 30.0% | |
| GAACGATTCATTTCATTTCA+TGG | + | chr2_3:9287486-9287505 | Msa0276960:exon | 30.0% | |
| CTGCTATGGATATATAAGAT+CGG | - | chr2_3:9287648-9287667 | None:intergenic | 30.0% | |
| !!! | CATTTTTAGGGTTGCAAAAA+TGG | + | chr2_3:9287787-9287806 | Msa0276960:intron | 30.0% |
| CTGATGTTATTAAACAGAGA+TGG | + | chr2_3:9288045-9288064 | Msa0276960:intron | 30.0% | |
| !! | CCTAGTTTGTTTATCTTTCA+TGG | - | chr2_3:9288157-9288176 | None:intergenic | 30.0% |
| CCATGAAAGATAAACAAACT+AGG | + | chr2_3:9288154-9288173 | Msa0276960:intron | 30.0% | |
| ! | TGTATATTGACTATCCCATT+AGG | - | chr2_3:9288245-9288264 | None:intergenic | 30.0% |
| TTACCCACTTATTAGCAATT+TGG | + | chr2_3:9288587-9288606 | Msa0276960:intron | 30.0% | |
| AGACCAAATTGCTAATAAGT+GGG | - | chr2_3:9288593-9288612 | None:intergenic | 30.0% | |
| TTAGCCACAAACTATCAATT+TGG | + | chr2_3:9288619-9288638 | Msa0276960:intron | 30.0% | |
| ! | TCTCAACCCTAATATTTCTA+AGG | + | chr2_3:9288644-9288663 | Msa0276960:intron | 30.0% |
| GGTGAAAAATGCAATCTATT+TGG | - | chr2_3:9288847-9288866 | None:intergenic | 30.0% | |
| ! | TATTTTGTGCAGTTCACTTT+TGG | + | chr2_3:9288969-9288988 | Msa0276960:intron | 30.0% |
| !! | ATTTTGTGCAGTTCACTTTT+GGG | + | chr2_3:9288970-9288989 | Msa0276960:intron | 30.0% |
| ! | TTTTGCAAAATCAGCAACAT+TGG | - | chr2_3:9289026-9289045 | None:intergenic | 30.0% |
| CATTCCATAATTCATTCACT+TGG | - | chr2_3:9289181-9289200 | None:intergenic | 30.0% | |
| AACCTTAAAACCTTATGCTA+TGG | + | chr2_3:9289774-9289793 | Msa0276960:intron | 30.0% | |
| AAATGTTGCTGTGTTAATTG+AGG | - | chr2_3:9289832-9289851 | None:intergenic | 30.0% | |
| !!! | TTTCCTACTCTTATTTTCTC+CGG | - | chr2_3:9289914-9289933 | None:intergenic | 30.0% |
| GAAAATTGAGAACTACTACA+TGG | + | chr2_3:9289930-9289949 | Msa0276960:intron | 30.0% | |
| AACTAACATGTCAAGGATTA+TGG | - | chr2_3:9290019-9290038 | None:intergenic | 30.0% | |
| ACATTATGATTCAATGTGCA+TGG | + | chr2_3:9290189-9290208 | Msa0276960:intron | 30.0% | |
| ! | ATCATCAACAACGTACTTTT+GGG | - | chr2_3:9290215-9290234 | None:intergenic | 30.0% |
| ! | TATCATCAACAACGTACTTT+TGG | - | chr2_3:9290216-9290235 | None:intergenic | 30.0% |
| !! | TGTTTGTGTTTCCCATTTTT+GGG | - | chr2_3:9290261-9290280 | None:intergenic | 30.0% |
| ! | GTGATAGCCATGATATATTT+TGG | + | chr2_3:9290435-9290454 | Msa0276960:intron | 30.0% |
| AATAAAAAGGGGATGAGTTA+CGG | - | chr2_3:9290709-9290728 | None:intergenic | 30.0% | |
| GATTGAAAGCGAATTCGATT+TGG | - | chr2_3:9287449-9287468 | None:intergenic | 35.0% | |
| ! | CTTCAAAGCTTCAAGCTTTT+TGG | + | chr2_3:9287512-9287531 | Msa0276960:CDS | 35.0% |
| CACGAATGGATAAGAAAAGA+AGG | - | chr2_3:9287582-9287601 | None:intergenic | 35.0% | |
| ! | ATCGGAAGTGCATTATCAAA+GGG | - | chr2_3:9287630-9287649 | None:intergenic | 35.0% |
| ATCAAATCAAAGAGCTGCTA+TGG | - | chr2_3:9287662-9287681 | None:intergenic | 35.0% | |
| ! | ATCGTACAAAGCATCAAGAA+GGG | - | chr2_3:9288197-9288216 | None:intergenic | 35.0% |
| ! | AATCGTACAAAGCATCAAGA+AGG | - | chr2_3:9288198-9288217 | None:intergenic | 35.0% |
| AAGTGTGTATGAGTGTATTC+TGG | + | chr2_3:9288219-9288238 | Msa0276960:intron | 35.0% | |
| TGAGTGTATTCTGACCTAAT+TGG | - | chr2_3:9288308-9288327 | None:intergenic | 35.0% | |
| !! | CAACCGCTGATTCTATTAAA+CGG | + | chr2_3:9288514-9288533 | Msa0276960:intron | 35.0% |
| GAGACCAAATTGCTAATAAG+TGG | - | chr2_3:9288594-9288613 | None:intergenic | 35.0% | |
| ! | GAGACCAAATTGATAGTTTG+TGG | - | chr2_3:9288626-9288645 | None:intergenic | 35.0% |
| TAATCTCGAGAACCTATTTG+AGG | + | chr2_3:9288717-9288736 | Msa0276960:intron | 35.0% | |
| AAGAGACAACAGTTTGAATC+AGG | - | chr2_3:9288868-9288887 | None:intergenic | 35.0% | |
| ! | TTGACAACAACATTGATGAC+TGG | - | chr2_3:9288899-9288918 | None:intergenic | 35.0% |
| AGTGAACTGCACAAAATAAG+TGG | - | chr2_3:9288967-9288986 | None:intergenic | 35.0% | |
| CTTTCCTATCCTCAACAAAT+AGG | + | chr2_3:9289058-9289077 | Msa0276960:CDS | 35.0% | |
| ! | CATACCTATTTGTTGAGGAT+AGG | - | chr2_3:9289065-9289084 | None:intergenic | 35.0% |
| ATGCCCAAGTGAATGAATTA+TGG | + | chr2_3:9289174-9289193 | Msa0276960:intron | 35.0% | |
| ACAGCTGTGTCAAAAAGAAA+AGG | - | chr2_3:9289282-9289301 | None:intergenic | 35.0% | |
| ATGTGATGTGTGCATAATTC+AGG | + | chr2_3:9289493-9289512 | Msa0276960:intron | 35.0% | |
| TATATACTGAGAGAGCTGAT+TGG | - | chr2_3:9289732-9289751 | None:intergenic | 35.0% | |
| ! | CACCATAGCATAAGGTTTTA+AGG | - | chr2_3:9289779-9289798 | None:intergenic | 35.0% |
| CTTAAAACCTTATGCTATGG+TGG | + | chr2_3:9289777-9289796 | Msa0276960:intron | 35.0% | |
| TTTAACACCACCATAGCATA+AGG | - | chr2_3:9289787-9289806 | None:intergenic | 35.0% | |
| TGGTTCACTTATCATAATGC+CGG | + | chr2_3:9289892-9289911 | Msa0276960:intron | 35.0% | |
| TAGTTGCAACTAACATGTCA+AGG | - | chr2_3:9290026-9290045 | None:intergenic | 35.0% | |
| ! | GTGTTTGTGTTTCCCATTTT+TGG | - | chr2_3:9290262-9290281 | None:intergenic | 35.0% |
| TATATCATGGCTATCACACA+AGG | - | chr2_3:9290432-9290451 | None:intergenic | 35.0% | |
| CAACATGAAAATTGCAATCC+AGG | - | chr2_3:9290625-9290644 | None:intergenic | 35.0% | |
| GCAAAGAAGACTTACAACAA+GGG | - | chr2_3:9290761-9290780 | None:intergenic | 35.0% | |
| TGCAAAGAAGACTTACAACA+AGG | - | chr2_3:9290762-9290781 | None:intergenic | 35.0% | |
| !!! | CGAAGTAACTCACTGGTTTT+GGG | - | chr2_3:9287553-9287572 | None:intergenic | 40.0% |
| GAAAAAGCGAAGTAACTCAC+TGG | - | chr2_3:9287560-9287579 | None:intergenic | 40.0% | |
| ! | GATCGGAAGTGCATTATCAA+AGG | - | chr2_3:9287631-9287650 | None:intergenic | 40.0% |
| GTGTGAAGTAGCATAATGTG+AGG | + | chr2_3:9287919-9287938 | Msa0276960:intron | 40.0% | |
| AAACATGTACCTTGTATGCG+AGG | + | chr2_3:9288108-9288127 | Msa0276960:intron | 40.0% | |
| ATGAGTGTATTCTGGCCTAA+TGG | + | chr2_3:9288227-9288246 | Msa0276960:intron | 40.0% | |
| TGAGTGTATTCTGGCCTAAT+GGG | + | chr2_3:9288228-9288247 | Msa0276960:intron | 40.0% | |
| TGAGAGATCATCTCACTCTT+CGG | - | chr2_3:9288349-9288368 | None:intergenic | 40.0% | |
| AAGCCATGAGAGACAAACTA+GGG | - | chr2_3:9288373-9288392 | None:intergenic | 40.0% | |
| TGGCCGTTTAATAGAATCAG+CGG | - | chr2_3:9288520-9288539 | None:intergenic | 40.0% | |
| CTGATTCTATTAAACGGCCA+AGG | + | chr2_3:9288520-9288539 | Msa0276960:intron | 40.0% | |
| ATTCTATTAAACGGCCAAGG+TGG | + | chr2_3:9288523-9288542 | Msa0276960:intron | 40.0% | |
| GAGTCAAATTTGACAGAGAC+TGG | + | chr2_3:9288675-9288694 | Msa0276960:intron | 40.0% | |
| TTTGGGCACCTACATTTAAG+TGG | + | chr2_3:9288987-9289006 | Msa0276960:CDS | 40.0% | |
| TTGGGCACCTACATTTAAGT+GGG | + | chr2_3:9288988-9289007 | Msa0276960:CDS | 40.0% | |
| CTGATACCCCACTTAAATGT+AGG | - | chr2_3:9288998-9289017 | None:intergenic | 40.0% | |
| ! | ATGCGCATACCTATTTGTTG+AGG | - | chr2_3:9289070-9289089 | None:intergenic | 40.0% |
| TCAAAAGGGTGAATGATGAG+CGG | - | chr2_3:9289118-9289137 | None:intergenic | 40.0% | |
| ! | CTGAATTCTTTGAAAGGAGC+AGG | + | chr2_3:9289150-9289169 | Msa0276960:intron | 40.0% |
| TTACAGCTACTGGACTTATC+TGG | + | chr2_3:9289301-9289320 | Msa0276960:CDS | 40.0% | |
| AGTGGTCTGAAGATCATTTG+TGG | + | chr2_3:9289415-9289434 | Msa0276960:intron | 40.0% | |
| CACATCACATCTAGTGATGA+AGG | - | chr2_3:9289483-9289502 | None:intergenic | 40.0% | |
| AGATCACGCAAACAACAGTA+GGG | - | chr2_3:9289693-9289712 | None:intergenic | 40.0% | |
| ATGCCGGAGAAAATAAGAGT+AGG | + | chr2_3:9289908-9289927 | Msa0276960:intron | 40.0% | |
| TTGCAACGTTCACAGCAAAA+AGG | - | chr2_3:9290075-9290094 | None:intergenic | 40.0% | |
| !! | TTTTGCTGTGAACGTTGCAA+TGG | + | chr2_3:9290075-9290094 | Msa0276960:CDS | 40.0% |
| ! | ATTTGCGTGACAGTTGGTAT+AGG | - | chr2_3:9290111-9290130 | None:intergenic | 40.0% |
| !! | ATCCTGAAGAGCATTGTAGA+AGG | + | chr2_3:9290359-9290378 | Msa0276960:intron | 40.0% |
| TAACTCGTTATCTACTTCCC+AGG | + | chr2_3:9290510-9290529 | Msa0276960:intron | 40.0% | |
| TCTGACGAATAATCTTGCCT+GGG | - | chr2_3:9290530-9290549 | None:intergenic | 40.0% | |
| GCAAGATTATTCGTCAGAGA+AGG | + | chr2_3:9290532-9290551 | Msa0276960:CDS | 40.0% | |
| ! | CAAAAGCACAGGTCTTAACT+TGG | - | chr2_3:9290792-9290811 | None:intergenic | 40.0% |
| ! | GTTAAGACCTGTGCTTTTGA+AGG | + | chr2_3:9290793-9290812 | Msa0276960:three_prime_UTR | 40.0% |
| !!! | GCTTTTTGGAATCATCCAGC+TGG | + | chr2_3:9287526-9287545 | Msa0276960:CDS | 45.0% |
| !!! | GCGAAGTAACTCACTGGTTT+TGG | - | chr2_3:9287554-9287573 | None:intergenic | 45.0% |
| CGATTGAGCTATCATGAGAG+AGG | + | chr2_3:9288131-9288150 | Msa0276960:intron | 45.0% | |
| ! | CAACCCTAGTTTGTCTCTCA+TGG | + | chr2_3:9288367-9288386 | Msa0276960:intron | 45.0% |
| GAAGCCATGAGAGACAAACT+AGG | - | chr2_3:9288374-9288393 | None:intergenic | 45.0% | |
| TCATGATAGCTCAATTGCCC+TGG | + | chr2_3:9288396-9288415 | Msa0276960:intron | 45.0% | |
| TCTGATCGATGGATCATCCA+GGG | - | chr2_3:9288416-9288435 | None:intergenic | 45.0% | |
| GATGATCCATCGATCAGACA+AGG | + | chr2_3:9288418-9288437 | Msa0276960:intron | 45.0% | |
| TGTGTACCTTGTCTGATCGA+TGG | - | chr2_3:9288427-9288446 | None:intergenic | 45.0% | |
| GTTAAATATAGGGGCCACCT+TGG | - | chr2_3:9288540-9288559 | None:intergenic | 45.0% | |
| TCTGCAGGACATCCTCAAAT+AGG | - | chr2_3:9288732-9288751 | None:intergenic | 45.0% | |
| AAATTCATCCCCAACTCTGC+AGG | - | chr2_3:9288747-9288766 | None:intergenic | 45.0% | |
| TGCAGAGTTGGGGATGAATT+TGG | + | chr2_3:9288746-9288765 | Msa0276960:intron | 45.0% | |
| AGAGTTGGGGATGAATTTGG+TGG | + | chr2_3:9288749-9288768 | Msa0276960:intron | 45.0% | |
| TGGGCACCTACATTTAAGTG+GGG | + | chr2_3:9288989-9289008 | Msa0276960:CDS | 45.0% | |
| TGAGGATAGGAAAGCTTCTC+TGG | - | chr2_3:9289052-9289071 | None:intergenic | 45.0% | |
| TTACGCTTTGCTTGCACTGA+AGG | - | chr2_3:9289442-9289461 | None:intergenic | 45.0% | |
| CAGATCACGCAAACAACAGT+AGG | - | chr2_3:9289694-9289713 | None:intergenic | 45.0% | |
| ACCAACTGTCACGCAAATTG+CGG | + | chr2_3:9290113-9290132 | Msa0276960:CDS | 45.0% | |
| ! | TATGTTAGTTTGGCCCTTCC+CGG | + | chr2_3:9290234-9290253 | Msa0276960:intron | 45.0% |
| GTCCTTCTACAATGCTCTTC+AGG | - | chr2_3:9290364-9290383 | None:intergenic | 45.0% | |
| CTCTGACGAATAATCTTGCC+TGG | - | chr2_3:9290531-9290550 | None:intergenic | 45.0% | |
| !! | ATAAATAAATAAATAAAAAG+GGG | - | chr2_3:9290720-9290739 | None:intergenic | 5.0% |
| GTCTGATCGATGGATCATCC+AGG | - | chr2_3:9288417-9288436 | None:intergenic | 50.0% | |
| TTGAGGATGTCCTGCAGAGT+TGG | + | chr2_3:9288734-9288753 | Msa0276960:intron | 50.0% | |
| TGAGGATGTCCTGCAGAGTT+GGG | + | chr2_3:9288735-9288754 | Msa0276960:intron | 50.0% | |
| GGATAGGAAAGCTTCTCTGG+TGG | - | chr2_3:9289049-9289068 | None:intergenic | 50.0% | |
| GACACAGCTGTTACAGCTAC+TGG | + | chr2_3:9289291-9289310 | Msa0276960:intron | 50.0% | |
| AACGTTGCAATGGCAGGAAC+TGG | + | chr2_3:9290085-9290104 | Msa0276960:CDS | 50.0% | |
| ACCGCAATTTGCGTGACAGT+TGG | - | chr2_3:9290117-9290136 | None:intergenic | 50.0% | |
| ! | ATGTTAGTTTGGCCCTTCCC+GGG | + | chr2_3:9290235-9290254 | Msa0276960:intron | 50.0% |
| !! | TGTTTCCCATTTTTGGGCCC+GGG | - | chr2_3:9290255-9290274 | None:intergenic | 50.0% |
| !! | GTGTTTCCCATTTTTGGGCC+CGG | - | chr2_3:9290256-9290275 | None:intergenic | 50.0% |
| TGTACTTGGAGCTCGATACC+TGG | + | chr2_3:9290604-9290623 | Msa0276960:three_prime_UTR | 50.0% | |
| !!! | TCACTGGTTTTGGGACCAGC+TGG | - | chr2_3:9287544-9287563 | None:intergenic | 55.0% |
| GCTCAATCGCCTCGCATACA+AGG | - | chr2_3:9288120-9288139 | None:intergenic | 55.0% | |
| GAGGATGTCCTGCAGAGTTG+GGG | + | chr2_3:9288736-9288755 | Msa0276960:intron | 55.0% | |
| GCTGTGAACGTTGCAATGGC+AGG | + | chr2_3:9290079-9290098 | Msa0276960:CDS | 55.0% | |
| GGATGAGTTACGGCAGATGG+AGG | - | chr2_3:9290699-9290718 | None:intergenic | 55.0% | |
| AGGGGATGAGTTACGGCAGA+TGG | - | chr2_3:9290702-9290721 | None:intergenic | 55.0% | |
| !! | CCCATTTTTGGGCCCGGGAA+GGG | - | chr2_3:9290250-9290269 | None:intergenic | 60.0% |
| CCCTTCCCGGGCCCAAAAAT+GGG | + | chr2_3:9290247-9290266 | Msa0276960:intron | 60.0% | |
| !! | TCCCATTTTTGGGCCCGGGA+AGG | - | chr2_3:9290251-9290270 | None:intergenic | 60.0% |
| GCCCTTCCCGGGCCCAAAAA+TGG | + | chr2_3:9290246-9290265 | Msa0276960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9287391 | 9290821 | 9287391 | ID=Msa0276960;Name=Msa0276960 |
| chr2_3 | mRNA | 9287391 | 9290821 | 9287391 | ID=Msa0276960-mRNA-1;Parent=Msa0276960;Name=Msa0276960-mRNA-1;_AED=0.36;_eAED=0.36;_QI=114|1|1|1|1|1|5|250|106 |
| chr2_3 | exon | 9287391 | 9287559 | 9287391 | ID=Msa0276960-mRNA-1:exon:4247;Parent=Msa0276960-mRNA-1 |
| chr2_3 | exon | 9288981 | 9289079 | 9288981 | ID=Msa0276960-mRNA-1:exon:4248;Parent=Msa0276960-mRNA-1 |
| chr2_3 | exon | 9289298 | 9289350 | 9289298 | ID=Msa0276960-mRNA-1:exon:4249;Parent=Msa0276960-mRNA-1 |
| chr2_3 | exon | 9290061 | 9290134 | 9290061 | ID=Msa0276960-mRNA-1:exon:4250;Parent=Msa0276960-mRNA-1 |
| chr2_3 | exon | 9290532 | 9290821 | 9290532 | ID=Msa0276960-mRNA-1:exon:4251;Parent=Msa0276960-mRNA-1 |
| chr2_3 | five_prime_UTR | 9287391 | 9287504 | 9287391 | ID=Msa0276960-mRNA-1:five_prime_utr;Parent=Msa0276960-mRNA-1 |
| chr2_3 | CDS | 9287505 | 9287559 | 9287505 | ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1 |
| chr2_3 | CDS | 9288981 | 9289079 | 9288981 | ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1 |
| chr2_3 | CDS | 9289298 | 9289350 | 9289298 | ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1 |
| chr2_3 | CDS | 9290061 | 9290134 | 9290061 | ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1 |
| chr2_3 | CDS | 9290532 | 9290571 | 9290532 | ID=Msa0276960-mRNA-1:cds;Parent=Msa0276960-mRNA-1 |
| chr2_3 | three_prime_UTR | 9290572 | 9290821 | 9290572 | ID=Msa0276960-mRNA-1:three_prime_utr;Parent=Msa0276960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
