AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131170 MtrunA17_Chr7g0273011 98.204 167 3 0 1 167 1 167 9.50e-124 345
Msa1131170 MtrunA17_Chr3g0087791 82.036 167 30 0 1 167 1 167 4.24e-108 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131170 AT5G27430.1 78.443 167 36 0 1 167 1 167 1.45e-101 289
Msa1131170 AT3G05230.1 75.449 167 41 0 1 167 1 167 5.97e-98 280
Msa1131170 AT3G05230.2 73.810 126 33 0 1 126 1 126 2.60e-69 206

Find 46 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAATAGCTTTCGAATAC+TGG 0.245072 7_3:+83694267 Msa1131170:three_prime_UTR
ACCTGATTCAAGGGTTTCTT+TGG 0.249498 7_3:-83693519 None:intergenic
AAATTCTCTACCACGCAAAT+TGG 0.318602 7_3:-83693998 None:intergenic
AGCATGACACTTAATATTTC+AGG 0.320278 7_3:+83693315 Msa1131170:CDS
AAACTTTGCATGCTCTTTAG+AGG 0.327720 7_3:-83693845 None:intergenic
TGTAGGTGTTGAATATTAAT+TGG 0.336117 7_3:+83691576 Msa1131170:intron
AGACAACCACAAGCAAATTT+CGG 0.343664 7_3:-83694294 None:intergenic
TAAATACCGTTTCATTGATC+AGG 0.381152 7_3:+83693885 Msa1131170:CDS
ATCTATCTGTTTGATAAAAG+TGG 0.408510 7_3:-83691301 None:intergenic
AGAAGGAGATGGAGAATTGA+AGG 0.420356 7_3:-83691446 None:intergenic
CTTTATATCCCTTATAGAAA+AGG 0.421029 7_3:-83694157 None:intergenic
ACCAAAGAAACCCTTGAATC+AGG 0.421703 7_3:+83693518 Msa1131170:CDS
ATCTGTATTCCCTGGGCAAT+CGG 0.431457 7_3:-83694095 None:intergenic
TAACCGAATGAATGCATTCT+CGG 0.433139 7_3:-83691349 None:intergenic
ATCTCCTTCTGCTCAAGTCC+AGG 0.434481 7_3:+83691459 Msa1131170:CDS
TTGCTTTAAAGAAATAGATC+AGG 0.435046 7_3:+83694182 Msa1131170:three_prime_UTR
AATTACCTCGTCGTTACCGT+TGG 0.465299 7_3:-83691612 None:intergenic
ATTACCTCGTCGTTACCGTT+GGG 0.472005 7_3:-83691611 None:intergenic
GTTCACGTGGAACACAAAAC+AGG 0.477621 7_3:+83693353 Msa1131170:CDS
AAGGCATCATCTGTATTCCC+TGG 0.485485 7_3:-83694103 None:intergenic
CATACATCATACCTGATTCA+AGG 0.490102 7_3:-83693529 None:intergenic
TCCCTGGGCAATCGGTAACC+TGG 0.493808 7_3:-83694087 None:intergenic
AACTTTGCATGCTCTTTAGA+GGG 0.517084 7_3:-83693844 None:intergenic
AAATATTGCGCTTTGGATGG+TGG 0.521686 7_3:+83694210 Msa1131170:three_prime_UTR
ACTCCGAGAATGCATTCATT+CGG 0.527592 7_3:+83691346 Msa1131170:exon
TGCCAGGTTACCGATTGCCC+AGG 0.539181 7_3:+83694085 Msa1131170:CDS
GGGAATGATACCATCCCAAA+GGG 0.544276 7_3:-83693824 None:intergenic
AATTTAACTTGACCTTGCAC+TGG 0.545173 7_3:+83694016 Msa1131170:CDS
TATATACCTGATCAATGAAA+CGG 0.547986 7_3:-83693891 None:intergenic
GCTGATAAAATAGTAATGCC+AGG 0.552824 7_3:+83694069 Msa1131170:CDS
TGGACTTGAGCAGAAGGAGA+TGG 0.553502 7_3:-83691457 None:intergenic
AGAAAATGTTAGCAAAGCGT+TGG 0.554899 7_3:-83691377 None:intergenic
GAGACCTGGACTTGAGCAGA+AGG 0.562774 7_3:-83691463 None:intergenic
TGGCATAACATGCCAGTGCA+AGG 0.570110 7_3:-83694028 None:intergenic
ATACATCATACCTGATTCAA+GGG 0.573602 7_3:-83693528 None:intergenic
TTACAGATATCCCTTTGGGA+TGG 0.587335 7_3:+83693814 Msa1131170:intron
TGCTTTAAAGAAATAGATCA+GGG 0.588021 7_3:+83694183 Msa1131170:three_prime_UTR
AGGCATCATCTGTATTCCCT+GGG 0.600588 7_3:-83694102 None:intergenic
GCCAGGTTACCGATTGCCCA+GGG 0.602814 7_3:+83694086 Msa1131170:CDS
AGGGAATGATACCATCCCAA+AGG 0.633639 7_3:-83693825 None:intergenic
GGAAATCCGAAATTTGCTTG+TGG 0.651769 7_3:+83694288 Msa1131170:three_prime_UTR
GTGGATAAAGAATTGAAACT+CGG 0.664027 7_3:-83691282 None:intergenic
ATTTACAGTCTCTGTTCACG+TGG 0.665261 7_3:+83693340 Msa1131170:CDS
GTACAGGGAACCAATTTGCG+TGG 0.675868 7_3:+83693988 Msa1131170:intron
ACAACCCAACGGTAACGACG+AGG 0.716822 7_3:+83691607 Msa1131170:CDS
TGGTTTCAGAAACAACCCAA+CGG 0.718343 7_3:+83691596 Msa1131170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTATTTTTATGTGT+AGG + chr7_3:83691559-83691578 Msa1131170:intron 10.0%
!!! TATACTGTTTTTTTTTTTTT+TGG - chr7_3:83692742-83692761 None:intergenic 10.0%
!!! GTTTTTTGCAAATAAATAAA+AGG - chr7_3:83692855-83692874 None:intergenic 15.0%
!!! TTCAAACTTTTTTTTTTGAA+TGG + chr7_3:83693240-83693259 Msa1131170:intron 15.0%
!! TTACTTTATCCTTATGTTTA+TGG + chr7_3:83691757-83691776 Msa1131170:intron 20.0%
!! AATAAATAAAAGGAGAGATT+GGG - chr7_3:83692845-83692864 None:intergenic 20.0%
!! AAATAAATAAAAGGAGAGAT+TGG - chr7_3:83692846-83692865 None:intergenic 20.0%
!! ATATGATACTCATAATAATG+TGG - chr7_3:83693151-83693170 None:intergenic 20.0%
!! AATAAAGACAAAAAACTAAG+AGG - chr7_3:83693402-83693421 None:intergenic 20.0%
!!! TAGTTTTTTGTCTTTATTTC+AGG + chr7_3:83693404-83693423 Msa1131170:intron 20.0%
!!! TTTAATCGCTTGTTATAAAA+AGG - chr7_3:83693619-83693638 None:intergenic 20.0%
!! AAATAAAAAAGGCAAAGTTA+AGG - chr7_3:83693966-83693985 None:intergenic 20.0%
!!! TAACTTTAACCTTTTCTATA+AGG + chr7_3:83694148-83694167 Msa1131170:three_prime_UTR 20.0%
!!! AACTTTAACCTTTTCTATAA+GGG + chr7_3:83694149-83694168 Msa1131170:three_prime_UTR 20.0%
!!! TTTTCTATAAGGGATATAAA+GGG + chr7_3:83694159-83694178 Msa1131170:three_prime_UTR 20.0%
! ATCTATCTGTTTGATAAAAG+TGG - chr7_3:83691304-83691323 None:intergenic 25.0%
!!! TGTAGGTGTTGAATATTAAT+TGG + chr7_3:83691576-83691595 Msa1131170:intron 25.0%
! ACACAATTACCATAAACATA+AGG - chr7_3:83691769-83691788 None:intergenic 25.0%
!!! TAATTGTGTCATTTAAGTTG+TGG + chr7_3:83691780-83691799 Msa1131170:intron 25.0%
!! ATGTGATTTTGAATTACTGA+AGG + chr7_3:83691944-83691963 Msa1131170:intron 25.0%
! TCCTATATATAAGAGAAAGT+TGG + chr7_3:83692038-83692057 Msa1131170:intron 25.0%
! CCTATATATAAGAGAAAGTT+GGG + chr7_3:83692039-83692058 Msa1131170:intron 25.0%
!!! TATTGGTTCAAAATTTGGAT+CGG - chr7_3:83692085-83692104 None:intergenic 25.0%
!!! TGATGTATTGGTTCAAAATT+TGG - chr7_3:83692090-83692109 None:intergenic 25.0%
! CCTAAATATAAGAGAAAGTT+GGG - chr7_3:83692124-83692143 None:intergenic 25.0%
! TCCTAAATATAAGAGAAAGT+TGG - chr7_3:83692125-83692144 None:intergenic 25.0%
! GATTACTTATATAGGGTATA+GGG + chr7_3:83692152-83692171 Msa1131170:intron 25.0%
! CACAATCAGTTGAAAAAATA+AGG - chr7_3:83692352-83692371 None:intergenic 25.0%
!!! TTAGAAAGTGGGTTATATAA+GGG + chr7_3:83692514-83692533 Msa1131170:intron 25.0%
! AACAGTATAATTGTAGAACT+TGG + chr7_3:83692753-83692772 Msa1131170:intron 25.0%
! ATAAATAAAAGGAGAGATTG+GGG - chr7_3:83692844-83692863 None:intergenic 25.0%
!!! CTACATACTTTTTTCAAAGA+TGG + chr7_3:83693090-83693109 Msa1131170:intron 25.0%
! TTTATTTCAGGACAAAAGTT+GGG + chr7_3:83693416-83693435 Msa1131170:intron 25.0%
! TATATACCTGATCAATGAAA+CGG - chr7_3:83693894-83693913 None:intergenic 25.0%
! ATCAGGTATATAACTCTTAT+AGG + chr7_3:83693902-83693921 Msa1131170:intron 25.0%
! CAAAAACATTAACATGACAA+AGG - chr7_3:83694125-83694144 None:intergenic 25.0%
! CTTTATATCCCTTATAGAAA+AGG - chr7_3:83694160-83694179 None:intergenic 25.0%
!! CTTTTCTATAAGGGATATAA+AGG + chr7_3:83694158-83694177 Msa1131170:three_prime_UTR 25.0%
!!! TTGCTTTAAAGAAATAGATC+AGG + chr7_3:83694182-83694201 Msa1131170:three_prime_UTR 25.0%
!!! TGCTTTAAAGAAATAGATCA+GGG + chr7_3:83694183-83694202 Msa1131170:three_prime_UTR 25.0%
GTGGATAAAGAATTGAAACT+CGG - chr7_3:83691285-83691304 None:intergenic 30.0%
CCTTACATATACTGTAACAT+GGG - chr7_3:83691851-83691870 None:intergenic 30.0%
TCCTTACATATACTGTAACA+TGG - chr7_3:83691852-83691871 None:intergenic 30.0%
CTATAGTTATAAACTCCATC+CGG + chr7_3:83692015-83692034 Msa1131170:intron 30.0%
CTTTCTCTTATATATAGGAC+CGG - chr7_3:83692037-83692056 None:intergenic 30.0%
CCCAACTTTCTCTTATATAT+AGG - chr7_3:83692042-83692061 None:intergenic 30.0%
TTGGGTCAACAAAAGTTAAT+GGG + chr7_3:83692057-83692076 Msa1131170:intron 30.0%
! ATTGGTTCAAAATTTGGATC+GGG - chr7_3:83692084-83692103 None:intergenic 30.0%
CCCAACTTTCTCTTATATTT+AGG + chr7_3:83692121-83692140 Msa1131170:intron 30.0%
! CTTTCTCTTATATTTAGGAC+TGG + chr7_3:83692126-83692145 Msa1131170:intron 30.0%
GGATTACTTATATAGGGTAT+AGG + chr7_3:83692151-83692170 Msa1131170:intron 30.0%
! TTGCTTCATAAGACTCTTTT+TGG - chr7_3:83692236-83692255 None:intergenic 30.0%
GGTATATGACTTCACATATA+AGG - chr7_3:83692290-83692309 None:intergenic 30.0%
ACATAAACCCTCTTAATCAA+GGG - chr7_3:83692399-83692418 None:intergenic 30.0%
AACATAAACCCTCTTAATCA+AGG - chr7_3:83692400-83692419 None:intergenic 30.0%
TGATTAAGAGGGTTTATGTT+AGG + chr7_3:83692400-83692419 Msa1131170:intron 30.0%
TAACATCTTTCGTAACAATC+TGG - chr7_3:83692471-83692490 None:intergenic 30.0%
AGATTGTTACGAAAGATGTT+AGG + chr7_3:83692470-83692489 Msa1131170:intron 30.0%
GATTGTTACGAAAGATGTTA+GGG + chr7_3:83692471-83692490 Msa1131170:intron 30.0%
TCAGTTGAAAAGTTAGAAAG+TGG + chr7_3:83692502-83692521 Msa1131170:intron 30.0%
CAGTTGAAAAGTTAGAAAGT+GGG + chr7_3:83692503-83692522 Msa1131170:intron 30.0%
!! GTTAGAAAGTGGGTTATATA+AGG + chr7_3:83692513-83692532 Msa1131170:intron 30.0%
! GCAATTCTTTCTGTTTTCTA+AGG + chr7_3:83692643-83692662 Msa1131170:intron 30.0%
AGTATAATTGTAGAACTTGG+AGG + chr7_3:83692756-83692775 Msa1131170:intron 30.0%
GTATAATTGTAGAACTTGGA+GGG + chr7_3:83692757-83692776 Msa1131170:intron 30.0%
TAAATAAAAGGAGAGATTGG+GGG - chr7_3:83692843-83692862 None:intergenic 30.0%
AGGAAGATAGTGAAGAAATA+AGG - chr7_3:83692877-83692896 None:intergenic 30.0%
ACTATCTTCCTTACTAACTA+AGG + chr7_3:83692886-83692905 Msa1131170:intron 30.0%
TACATCGAATCTTTCAGATT+TGG - chr7_3:83692947-83692966 None:intergenic 30.0%
ATTTACATACAACAGACAAG+AGG + chr7_3:83692997-83693016 Msa1131170:intron 30.0%
AAATCATAGCTGGAAATTGT+TGG + chr7_3:83693046-83693065 Msa1131170:intron 30.0%
AATTGTTGGAAACATCATGT+TGG + chr7_3:83693060-83693079 Msa1131170:intron 30.0%
GATACTCATAATAATGTGGT+AGG - chr7_3:83693147-83693166 None:intergenic 30.0%
GACATTGAATATCAGAGAAA+GGG - chr7_3:83693206-83693225 None:intergenic 30.0%
TGACATTGAATATCAGAGAA+AGG - chr7_3:83693207-83693226 None:intergenic 30.0%
ATTCGTTGTTCAAACTGAAA+TGG + chr7_3:83693269-83693288 Msa1131170:intron 30.0%
AGCATGACACTTAATATTTC+AGG + chr7_3:83693315-83693334 Msa1131170:CDS 30.0%
! CTTTATTTCAGGACAAAAGT+TGG + chr7_3:83693415-83693434 Msa1131170:intron 30.0%
TTATTTCAGGACAAAAGTTG+GGG + chr7_3:83693417-83693436 Msa1131170:intron 30.0%
! GGAAGAAAGGAAACTAATTT+TGG + chr7_3:83693438-83693457 Msa1131170:intron 30.0%
ATACATCATACCTGATTCAA+GGG - chr7_3:83693531-83693550 None:intergenic 30.0%
AAGCGATTAAAAGAAAGACA+TGG + chr7_3:83693628-83693647 Msa1131170:intron 30.0%
AAAGAAAGACATGGTAATAG+TGG + chr7_3:83693637-83693656 Msa1131170:intron 30.0%
AAGAAAGACATGGTAATAGT+GGG + chr7_3:83693638-83693657 Msa1131170:intron 30.0%
! CATTTTACAGATATCCCTTT+GGG + chr7_3:83693810-83693829 Msa1131170:intron 30.0%
TAAATACCGTTTCATTGATC+AGG + chr7_3:83693885-83693904 Msa1131170:CDS 30.0%
GAATTACCTCAGATTTCTTT+AGG + chr7_3:83693940-83693959 Msa1131170:intron 30.0%
!!! TGCCTTTTTTATTTGTGTAC+AGG + chr7_3:83693972-83693991 Msa1131170:intron 30.0%
!!! GCCTTTTTTATTTGTGTACA+GGG + chr7_3:83693973-83693992 Msa1131170:intron 30.0%
TCCCTGTACACAAATAAAAA+AGG - chr7_3:83693977-83693996 None:intergenic 30.0%
! AAAAAATATTGCGCTTTGGA+TGG + chr7_3:83694207-83694226 Msa1131170:three_prime_UTR 30.0%
TAACCGAATGAATGCATTCT+CGG - chr7_3:83691352-83691371 None:intergenic 35.0%
AGAAAATGTTAGCAAAGCGT+TGG - chr7_3:83691380-83691399 None:intergenic 35.0%
CGAAAGAAGGACAAAAATCA+GGG - chr7_3:83691812-83691831 None:intergenic 35.0%
! CCTGATTTTTGTCCTTCTTT+CGG + chr7_3:83691810-83691829 Msa1131170:intron 35.0%
! TTTTTGTCCTTCTTTCGGTT+AGG + chr7_3:83691815-83691834 Msa1131170:intron 35.0%
! TTTTGTCCTTCTTTCGGTTA+GGG + chr7_3:83691816-83691835 Msa1131170:intron 35.0%
CCCATGTTACAGTATATGTA+AGG + chr7_3:83691848-83691867 Msa1131170:intron 35.0%
AAGGAACAGAACACAGTTTA+TGG + chr7_3:83691867-83691886 Msa1131170:intron 35.0%
TCTTCCTAGACAATACCATT+GGG - chr7_3:83691980-83691999 None:intergenic 35.0%
GTTGGGTCAACAAAAGTTAA+TGG + chr7_3:83692056-83692075 Msa1131170:intron 35.0%
!! GTCAACAAGAGTTGATGTAT+TGG - chr7_3:83692102-83692121 None:intergenic 35.0%
! TCTCTTATATTTAGGACTGG+AGG + chr7_3:83692129-83692148 Msa1131170:intron 35.0%
! CTCTTATATTTAGGACTGGA+GGG + chr7_3:83692130-83692149 Msa1131170:intron 35.0%
ACTGGAGGGATTACTTATAT+AGG + chr7_3:83692144-83692163 Msa1131170:intron 35.0%
CTGGAGGGATTACTTATATA+GGG + chr7_3:83692145-83692164 Msa1131170:intron 35.0%
TATAGGGTATAGGGTATGAA+AGG + chr7_3:83692161-83692180 Msa1131170:intron 35.0%
TGACTTCACATATAAGGCAA+GGG - chr7_3:83692284-83692303 None:intergenic 35.0%
ATGACTTCACATATAAGGCA+AGG - chr7_3:83692285-83692304 None:intergenic 35.0%
TGAAGTCATATACCTTCTGT+TGG + chr7_3:83692296-83692315 Msa1131170:intron 35.0%
TGCTGAATAAACAGTGTAGT+CGG + chr7_3:83692602-83692621 Msa1131170:intron 35.0%
! ATATATCAAGCACTGTGAAC+CGG - chr7_3:83692682-83692701 None:intergenic 35.0%
TTTGAAAGATACGAGGTCTT+TGG - chr7_3:83692805-83692824 None:intergenic 35.0%
! CTTGTCATTTGAAAGATACG+AGG - chr7_3:83692812-83692831 None:intergenic 35.0%
TCTTCCTTACTAACTAAGGA+AGG + chr7_3:83692890-83692909 Msa1131170:intron 35.0%
GTAGTTTGACGACTTCTAAT+AGG - chr7_3:83692922-83692941 None:intergenic 35.0%
ATCGAATCTTTCAGATTTGG+AGG - chr7_3:83692944-83692963 None:intergenic 35.0%
ATTCGATGTAATTGCTTCAG+AGG + chr7_3:83692957-83692976 Msa1131170:intron 35.0%
AAACAGGTCAAAATCATAGC+TGG + chr7_3:83693036-83693055 Msa1131170:intron 35.0%
ACTCATAATAATGTGGTAGG+CGG - chr7_3:83693144-83693163 None:intergenic 35.0%
! TTTTCATTTACCAGCTCGTT+TGG + chr7_3:83693178-83693197 Msa1131170:intron 35.0%
!! GGAAGCATTATTATTCTTGC+AGG + chr7_3:83693290-83693309 Msa1131170:intron 35.0%
! TGCTTCTTTTCTATGCTTTC+AGG + chr7_3:83693464-83693483 Msa1131170:intron 35.0%
CATACATCATACCTGATTCA+AGG - chr7_3:83693532-83693551 None:intergenic 35.0%
ATCAGGTATGATGTATGCTT+TGG + chr7_3:83693535-83693554 Msa1131170:intron 35.0%
AGTTGGCAAGCTTCAAATTT+AGG - chr7_3:83693596-83693615 None:intergenic 35.0%
!! CGCTTGTTATAAAAAGGAGT+TGG - chr7_3:83693613-83693632 None:intergenic 35.0%
CCAAAGGGATATCTGTAAAA+TGG - chr7_3:83693812-83693831 None:intergenic 35.0%
! CCATTTTACAGATATCCCTT+TGG + chr7_3:83693809-83693828 Msa1131170:intron 35.0%
AACTTTGCATGCTCTTTAGA+GGG - chr7_3:83693847-83693866 None:intergenic 35.0%
AAACTTTGCATGCTCTTTAG+AGG - chr7_3:83693848-83693867 None:intergenic 35.0%
TTAAGGCCTAAAGAAATCTG+AGG - chr7_3:83693949-83693968 None:intergenic 35.0%
AAATTCTCTACCACGCAAAT+TGG - chr7_3:83694001-83694020 None:intergenic 35.0%
!! AATTTAACTTGACCTTGCAC+TGG + chr7_3:83694016-83694035 Msa1131170:CDS 35.0%
GCCAAAAACTGGAAAAATGT+TGG + chr7_3:83694047-83694066 Msa1131170:CDS 35.0%
! GCCAACATTTTTCCAGTTTT+TGG - chr7_3:83694051-83694070 None:intergenic 35.0%
GCTGATAAAATAGTAATGCC+AGG + chr7_3:83694069-83694088 Msa1131170:CDS 35.0%
GGGAAAAAAATATTGCGCTT+TGG + chr7_3:83694203-83694222 Msa1131170:three_prime_UTR 35.0%
GAGAAATAGCTTTCGAATAC+TGG + chr7_3:83694267-83694286 Msa1131170:three_prime_UTR 35.0%
AGACAACCACAAGCAAATTT+CGG - chr7_3:83694297-83694316 None:intergenic 35.0%
ACTCCGAGAATGCATTCATT+CGG + chr7_3:83691346-83691365 Msa1131170:exon 40.0%
AGAAGGAGATGGAGAATTGA+AGG - chr7_3:83691449-83691468 None:intergenic 40.0%
TGGTTTCAGAAACAACCCAA+CGG + chr7_3:83691596-83691615 Msa1131170:CDS 40.0%
CCGAAAGAAGGACAAAAATC+AGG - chr7_3:83691813-83691832 None:intergenic 40.0%
AATCCCCAATGGTATTGTCT+AGG + chr7_3:83691973-83691992 Msa1131170:intron 40.0%
CTTCCTAGACAATACCATTG+GGG - chr7_3:83691979-83691998 None:intergenic 40.0%
CTCTTCCTAGACAATACCAT+TGG - chr7_3:83691981-83692000 None:intergenic 40.0%
CTCTTATATATAGGACCGGA+TGG - chr7_3:83692033-83692052 None:intergenic 40.0%
ACCACAACCCTTGATTAAGA+GGG + chr7_3:83692389-83692408 Msa1131170:intron 40.0%
TTATGTTAGGCGAAAGAAGC+AGG + chr7_3:83692413-83692432 Msa1131170:intron 40.0%
! CGGATGGTACCTTGTATTTT+GGG + chr7_3:83692552-83692571 Msa1131170:intron 40.0%
AGGAATGCTCCCAAAATACA+AGG - chr7_3:83692564-83692583 None:intergenic 40.0%
!!! TATTTTGGGAGCATTCCTGT+GGG + chr7_3:83692566-83692585 Msa1131170:intron 40.0%
CTCTCCTTCCTTAGTTAGTA+AGG - chr7_3:83692897-83692916 None:intergenic 40.0%
TACTTGTGTGTGCATGAAAC+AGG + chr7_3:83693020-83693039 Msa1131170:intron 40.0%
ATTTACAGTCTCTGTTCACG+TGG + chr7_3:83693340-83693359 Msa1131170:CDS 40.0%
ACCAAAGAAACCCTTGAATC+AGG + chr7_3:83693518-83693537 Msa1131170:CDS 40.0%
ACCTGATTCAAGGGTTTCTT+TGG - chr7_3:83693522-83693541 None:intergenic 40.0%
!! AAGACATGGTAATAGTGGGT+TGG + chr7_3:83693642-83693661 Msa1131170:intron 40.0%
!! TGCTGCATTTCTGTCACTTT+CGG + chr7_3:83693748-83693767 Msa1131170:intron 40.0%
! TTACAGATATCCCTTTGGGA+TGG + chr7_3:83693814-83693833 Msa1131170:intron 40.0%
TGGCATGTTATGCCAAAAAC+TGG + chr7_3:83694036-83694055 Msa1131170:CDS 40.0%
! AAATATTGCGCTTTGGATGG+TGG + chr7_3:83694210-83694229 Msa1131170:three_prime_UTR 40.0%
! GGAAATCCGAAATTTGCTTG+TGG + chr7_3:83694288-83694307 Msa1131170:three_prime_UTR 40.0%
GAAAGAGAAGAGAAGAGACC+TGG - chr7_3:83691480-83691499 None:intergenic 45.0%
ATTACCTCGTCGTTACCGTT+GGG - chr7_3:83691614-83691633 None:intergenic 45.0%
AATTACCTCGTCGTTACCGT+TGG - chr7_3:83691615-83691634 None:intergenic 45.0%
TCATCTCCCTAACCGAAAGA+AGG - chr7_3:83691825-83691844 None:intergenic 45.0%
! GAAGGAGTGTAAATCCCCAA+TGG + chr7_3:83691962-83691981 Msa1131170:intron 45.0%
TACCCTTCCTTGAGCACTTT+GGG - chr7_3:83692199-83692218 None:intergenic 45.0%
AGGAAGGGTAGTATGTGATG+TGG + chr7_3:83692209-83692228 Msa1131170:intron 45.0%
GACCACAACCCTTGATTAAG+AGG + chr7_3:83692388-83692407 Msa1131170:intron 45.0%
ACCCTCTTAATCAAGGGTTG+TGG - chr7_3:83692393-83692412 None:intergenic 45.0%
GCGAAAGAAGCAGGTTACAA+GGG + chr7_3:83692422-83692441 Msa1131170:intron 45.0%
AAGGGAAGTTACCAAGAGAG+CGG + chr7_3:83692532-83692551 Msa1131170:intron 45.0%
! GCGGATGGTACCTTGTATTT+TGG + chr7_3:83692551-83692570 Msa1131170:intron 45.0%
!!! GTATTTTGGGAGCATTCCTG+TGG + chr7_3:83692565-83692584 Msa1131170:intron 45.0%
CTAAGGCCAGTTCTATTCAC+CGG + chr7_3:83692660-83692679 Msa1131170:intron 45.0%
TGTGAACCGGTGAATAGAAC+TGG - chr7_3:83692669-83692688 None:intergenic 45.0%
CACAGTTATACTGCTTGGGA+AGG - chr7_3:83692716-83692735 None:intergenic 45.0%
CTTCCCAAGCAGTATAACTG+TGG + chr7_3:83692714-83692733 Msa1131170:intron 45.0%
GCTCCACAGTTATACTGCTT+GGG - chr7_3:83692720-83692739 None:intergenic 45.0%
AGATACGAGGTCTTTGGCTA+GGG - chr7_3:83692799-83692818 None:intergenic 45.0%
AAGATACGAGGTCTTTGGCT+AGG - chr7_3:83692800-83692819 None:intergenic 45.0%
TAAAAGGAGAGATTGGGGGA+AGG - chr7_3:83692839-83692858 None:intergenic 45.0%
GTTCACGTGGAACACAAAAC+AGG + chr7_3:83693353-83693372 Msa1131170:CDS 45.0%
GGACAAAAGTTGGGGAAGAA+AGG + chr7_3:83693425-83693444 Msa1131170:intron 45.0%
!! TGGGTTGGTCATTGTTGAGA+TGG + chr7_3:83693657-83693676 Msa1131170:intron 45.0%
GGGAATGATACCATCCCAAA+GGG - chr7_3:83693827-83693846 None:intergenic 45.0%
AGGGAATGATACCATCCCAA+AGG - chr7_3:83693828-83693847 None:intergenic 45.0%
ATCTGTATTCCCTGGGCAAT+CGG - chr7_3:83694098-83694117 None:intergenic 45.0%
AGGCATCATCTGTATTCCCT+GGG - chr7_3:83694105-83694124 None:intergenic 45.0%
! AAGGCATCATCTGTATTCCC+TGG - chr7_3:83694106-83694125 None:intergenic 45.0%
!! AAATAAAAATTAACAAAAAA+GGG - chr7_3:83691539-83691558 None:intergenic 5.0%
!! AAAATAAAAATTAACAAAAA+AGG - chr7_3:83691540-83691559 None:intergenic 5.0%
TGGACTTGAGCAGAAGGAGA+TGG - chr7_3:83691460-83691479 None:intergenic 50.0%
ATCTCCTTCTGCTCAAGTCC+AGG + chr7_3:83691459-83691478 Msa1131170:CDS 50.0%
! CTTCCTTGAGCACTTTGGGA+GGG - chr7_3:83692195-83692214 None:intergenic 50.0%
! CTCCCAAAGTGCTCAAGGAA+GGG + chr7_3:83692194-83692213 Msa1131170:intron 50.0%
CTACCCTTCCTTGAGCACTT+TGG - chr7_3:83692200-83692219 None:intergenic 50.0%
GAGTGAGAGTCTCCAACAGA+AGG - chr7_3:83692311-83692330 None:intergenic 50.0%
AGGGTTGTGGTCTATCGCAT+TGG - chr7_3:83692380-83692399 None:intergenic 50.0%
GGCGAAAGAAGCAGGTTACA+AGG + chr7_3:83692421-83692440 Msa1131170:intron 50.0%
GAAGTTACCAAGAGAGCGGA+TGG + chr7_3:83692536-83692555 Msa1131170:intron 50.0%
GCATTCCTGTGGGTAAAGTC+TGG + chr7_3:83692576-83692595 Msa1131170:intron 50.0%
GGCTCCACAGTTATACTGCT+TGG - chr7_3:83692721-83692740 None:intergenic 50.0%
AGAAAGGGATCCAAACGAGC+TGG - chr7_3:83693191-83693210 None:intergenic 50.0%
GTACAGGGAACCAATTTGCG+TGG + chr7_3:83693988-83694007 Msa1131170:intron 50.0%
TGGCATAACATGCCAGTGCA+AGG - chr7_3:83694031-83694050 None:intergenic 50.0%
GAGACCTGGACTTGAGCAGA+AGG - chr7_3:83691466-83691485 None:intergenic 55.0%
ACAACCCAACGGTAACGACG+AGG + chr7_3:83691607-83691626 Msa1131170:CDS 55.0%
! ACTCCCTCCCAAAGTGCTCA+AGG + chr7_3:83692189-83692208 Msa1131170:intron 55.0%
CCTTCCTTGAGCACTTTGGG+AGG - chr7_3:83692196-83692215 None:intergenic 55.0%
! CCTCCCAAAGTGCTCAAGGA+AGG + chr7_3:83692193-83692212 Msa1131170:intron 55.0%
! CAAGGTACCATCCGCTCTCT+TGG - chr7_3:83692546-83692565 None:intergenic 55.0%
CAGAGCCAGACTTTACCCAC+AGG - chr7_3:83692584-83692603 None:intergenic 55.0%
TACGAGGTCTTTGGCTAGGG+AGG - chr7_3:83692796-83692815 None:intergenic 55.0%
CTGCTTGGGAAGGAGAAGCG+AGG - chr7_3:83692706-83692725 None:intergenic 60.0%
! TGCCAGGTTACCGATTGCCC+AGG + chr7_3:83694085-83694104 Msa1131170:CDS 60.0%
! GCCAGGTTACCGATTGCCCA+GGG + chr7_3:83694086-83694105 Msa1131170:CDS 60.0%
TCCCTGGGCAATCGGTAACC+TGG - chr7_3:83694090-83694109 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83691282 83694321 83691282 ID=Msa1131170;Name=Msa1131170
chr7_3 mRNA 83691282 83694321 83691282 ID=Msa1131170-mRNA-1;Parent=Msa1131170;Name=Msa1131170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=73|1|1|1|1|1|6|202|167
chr7_3 exon 83691282 83691480 83691282 ID=Msa1131170-mRNA-1:exon:24841;Parent=Msa1131170-mRNA-1
chr7_3 exon 83691581 83691628 83691581 ID=Msa1131170-mRNA-1:exon:24842;Parent=Msa1131170-mRNA-1
chr7_3 exon 83693312 83693374 83693312 ID=Msa1131170-mRNA-1:exon:24843;Parent=Msa1131170-mRNA-1
chr7_3 exon 83693486 83693539 83693486 ID=Msa1131170-mRNA-1:exon:24844;Parent=Msa1131170-mRNA-1
chr7_3 exon 83693820 83693906 83693820 ID=Msa1131170-mRNA-1:exon:24845;Parent=Msa1131170-mRNA-1
chr7_3 exon 83693994 83694321 83693994 ID=Msa1131170-mRNA-1:exon:24846;Parent=Msa1131170-mRNA-1
chr7_3 five_prime_UTR 83691282 83691354 83691282 ID=Msa1131170-mRNA-1:five_prime_utr;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83691355 83691480 83691355 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83691581 83691628 83691581 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83693312 83693374 83693312 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83693486 83693539 83693486 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83693820 83693906 83693820 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 CDS 83693994 83694119 83693994 ID=Msa1131170-mRNA-1:cds;Parent=Msa1131170-mRNA-1
chr7_3 three_prime_UTR 83694120 83694321 83694120 ID=Msa1131170-mRNA-1:three_prime_utr;Parent=Msa1131170-mRNA-1
Gene Sequence

>Msa1131170

ATGCATTCATTCGGTTACAGAGCCAACGCTTTGCTAACATTTTCTCTTACGATTCTTGCACTTATGTGCGCGATTGCATCGCTTACTGATTCCTTCAATTCTCCATCTCCTTCTGCTCAAGTCCAGGTGTTGAATATTAATTGGTTTCAGAAACAACCCAACGGTAACGACGAGGTCAGCATGACACTTAATATTTCAGGAGATTTACAGTCTCTGTTCACGTGGAACACAAAACAGGTTTTTGTCTTTTTAGCTGCTGAATATGATACACCAAAGAAACCCTTGAATCAGATATCCCTTTGGGATGGTATCATTCCCTCTAAAGAGCATGCAAAGTTTTTGATTCACACGTCAAATAAATACCGTTTCATTGATCAGGGAACCAATTTGCGTGGTAGAGAATTTAACTTGACCTTGCACTGGCATGTTATGCCAAAAACTGGAAAAATGTTGGCTGATAAAATAGTAATGCCAGGTTACCGATTGCCCAGGGAATACAGATGA

Protein sequence

>Msa1131170

MHSFGYRANALLTFSLTILALMCAIASLTDSFNSPSPSAQVQVLNINWFQKQPNGNDEVSMTLNISGDLQSLFTWNTKQVFVFLAAEYDTPKKPLNQISLWDGIIPSKEHAKFLIHTSNKYRFIDQGTNLRGREFNLTLHWHVMPKTGKMLADKIVMPGYRLPREYR*