AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0455900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455900 MtrunA17_Chr3g0094501 93.636 220 2 2 1 208 39 258 7.55e-147 421
Msa0455900 MtrunA17_Chr3g0094501 94.574 129 7 0 207 335 315 443 3.11e-81 253
Msa0455900 MtrunA17_Chr5g0441911 57.921 404 99 8 1 335 36 437 4.69e-144 414
Msa0455900 MtrunA17_Chr5g0445221 39.096 376 171 9 2 335 58 417 9.89e-79 246
Msa0455900 MtrunA17_Chr3g0101031 37.984 387 174 10 2 335 59 432 1.92e-71 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0455900 AT5G12300.1 51.482 371 124 12 2 335 23 374 1.44e-103 309
Msa0455900 AT5G55530.2 42.857 364 167 10 2 335 53 405 1.53e-80 251
Msa0455900 AT5G55530.1 42.857 364 167 10 2 335 53 405 1.53e-80 251
Msa0455900 AT5G55530.3 42.857 364 167 10 2 335 53 405 1.53e-80 251
Msa0455900 AT1G50570.2 39.106 358 184 8 2 335 41 388 5.89e-69 221
Msa0455900 AT1G50570.1 39.106 358 184 8 2 335 41 388 5.89e-69 221

Find 48 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTATCGGTCTCTAATT+TGG 0.168132 3_3:+49026186 None:intergenic
GGTTTGTGAGTACTTCAATT+TGG 0.266850 3_3:-49026803 Msa0455900:CDS
TACTTCAATTTGGAATCTTA+TGG 0.269431 3_3:-49026793 Msa0455900:CDS
GCATCAATTCACCGAGTCTT+TGG 0.292100 3_3:-49026290 Msa0455900:CDS
AATCTTATGGTTCTGTTTCA+AGG 0.305198 3_3:-49026780 Msa0455900:CDS
TTGCCGTTTCTTCAACTTAG+TGG 0.324790 3_3:-49026739 Msa0455900:CDS
TCATTAGCCACATTGATATC+AGG 0.338851 3_3:+49026838 None:intergenic
GAACTCAAAGTCGAATTGAT+TGG 0.346252 3_3:+49026943 None:intergenic
GTTTAGTTTATTGTGACTTC+AGG 0.348201 3_3:-49026061 Msa0455900:three_prime_UTR
GTTTCAAGGCCTAATTCAAT+AGG 0.354760 3_3:-49026766 Msa0455900:CDS
TCTAGTTTCGCTTTCTTCCT+TGG 0.365371 3_3:+49026486 None:intergenic
GATTATCATGATTGTGATCA+AGG 0.365568 3_3:+49026245 None:intergenic
GGCAACGATCCTATTGAATT+AGG 0.380609 3_3:+49026757 None:intergenic
GGCTAATGAGAATCAGAAAA+TGG 0.381354 3_3:-49026824 Msa0455900:CDS
TCCACAAGAATCATCAATAA+AGG 0.381805 3_3:-49027222 Msa0455900:CDS
CTTGTGGAGAGCGTTTCATC+AGG 0.384059 3_3:+49027237 None:intergenic
AATATAGAAGCTGCAAAATT+CGG 0.391192 3_3:-49026406 Msa0455900:CDS
TCAATTCTAGAATACTCAAT+TGG 0.410165 3_3:+49026865 None:intergenic
GTAACACAATTTATATTCCT+TGG 0.413393 3_3:-49026039 Msa0455900:three_prime_UTR
AAAATTCTCATTGTTATCAA+TGG 0.418188 3_3:+49025826 None:intergenic
TCCGCCACAAAATATCGATA+TGG 0.421403 3_3:-49026368 Msa0455900:CDS
TTTGAGTTCGAAACCACAAT+CGG 0.438281 3_3:-49026929 Msa0455900:CDS
ACCTTTATTGATGATTCTTG+TGG 0.460058 3_3:+49027221 None:intergenic
AAAACGAGACGAATATTGAT+AGG 0.461835 3_3:-49026429 Msa0455900:CDS
TCGCTTTCTTCCTTGGAAGT+TGG 0.466636 3_3:+49026493 None:intergenic
ATTGCTTCCATTAACAAAAG+AGG 0.481751 3_3:+49025972 None:intergenic
AATCATGATAATCAAAATCA+AGG 0.499360 3_3:-49026235 Msa0455900:CDS
TGATGTAATTCAAAATCATA+AGG 0.500874 3_3:-49026212 Msa0455900:CDS
GTTAATTGAACAGTTCCAGC+TGG 0.526635 3_3:+49026988 None:intergenic
CTCATTGTTATCAATGGCAT+AGG 0.534089 3_3:+49025832 None:intergenic
GAACCACTAAGTTGAAGAAA+CGG 0.536520 3_3:+49026736 None:intergenic
GAAATGACAATGAATTCGTC+AGG 0.546995 3_3:-49026694 Msa0455900:intron
TCCAGATACTCCAACTTCCA+AGG 0.556108 3_3:-49026503 Msa0455900:intron
TTGAGTTCGAAACCACAATC+GGG 0.560282 3_3:-49026928 Msa0455900:intron
TGATTGTGATCAAGGTCCAT+TGG 0.563994 3_3:+49026253 None:intergenic
ATTTCACAGTCAACATCTTG+AGG 0.577410 3_3:+49026712 None:intergenic
TTGTGGAGAGCGTTTCATCA+GGG 0.583959 3_3:+49027238 None:intergenic
ACAAGAATCATCAATAAAGG+TGG 0.585543 3_3:-49027219 Msa0455900:CDS
TAATTATTAAATAGTCATGA+AGG 0.588895 3_3:+49025907 None:intergenic
GATGAATTAGTACCCGATTG+TGG 0.591123 3_3:+49026916 None:intergenic
GCTTCCATTAACAAAAGAGG+AGG 0.592168 3_3:+49025975 None:intergenic
GGCGAAAATGAAGCTACCAA+TGG 0.599527 3_3:-49026269 Msa0455900:CDS
AAGAGGAGGTTAAACAACAT+AGG 0.615947 3_3:+49025989 None:intergenic
GCCACAAAATATCGATATGG+AGG 0.626756 3_3:-49026365 Msa0455900:CDS
TATATGGCTGCTGCATCAAG+AGG 0.635021 3_3:+49026112 None:intergenic
GGAGTTAAAGTTCTCAACCA+AGG 0.638594 3_3:-49026452 Msa0455900:CDS
AGCTGTCATAACTATCACCA+AGG 0.676334 3_3:+49026022 None:intergenic
TGAATTTCCTGATATCAATG+TGG 0.679366 3_3:-49026845 Msa0455900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTCAATCAAAATTTAA+GGG - chr3_3:49025978-49025997 Msa0455900:three_prime_UTR 10.0%
!! TTATAACAAAAATAGTTATA+TGG + chr3_3:49027072-49027091 None:intergenic 10.0%
!!! AATTTTCAATCAAAATTTAA+GGG - chr3_3:49025978-49025997 Msa0455900:three_prime_UTR 10.0%
!! TTATAACAAAAATAGTTATA+TGG + chr3_3:49027072-49027091 None:intergenic 10.0%
!!! CTTAAATTTTGATTGAAAAT+TGG + chr3_3:49025979-49025998 None:intergenic 15.0%
!!! CAATTTTCAATCAAAATTTA+AGG - chr3_3:49025977-49025996 Msa0455900:three_prime_UTR 15.0%
!! TAATTATTAAATAGTCATGA+AGG + chr3_3:49027261-49027280 None:intergenic 15.0%
!!! CTTAAATTTTGATTGAAAAT+TGG + chr3_3:49025979-49025998 None:intergenic 15.0%
!!! CAATTTTCAATCAAAATTTA+AGG - chr3_3:49025977-49025996 Msa0455900:three_prime_UTR 15.0%
!! TAATTATTAAATAGTCATGA+AGG + chr3_3:49027261-49027280 None:intergenic 15.0%
!! AATCATGATAATCAAAATCA+AGG - chr3_3:49026930-49026949 Msa0455900:CDS 20.0%
!! TGATGTAATTCAAAATCATA+AGG - chr3_3:49026953-49026972 Msa0455900:CDS 20.0%
!! AATCATGATAATCAAAATCA+AGG - chr3_3:49026930-49026949 Msa0455900:CDS 20.0%
!! TGATGTAATTCAAAATCATA+AGG - chr3_3:49026953-49026972 Msa0455900:CDS 20.0%
!!! CTGTTTTAAAATGTGAGATT+TGG - chr3_3:49026022-49026041 Msa0455900:three_prime_UTR 25.0%
!! ACTTAGAAGATCAACTTTTA+GGG - chr3_3:49026067-49026086 Msa0455900:three_prime_UTR 25.0%
! TTACCAAAAACTTCAGAAAT+CGG + chr3_3:49026105-49026124 None:intergenic 25.0%
!!! ATTTCTGAAGTTTTTGGTAA+AGG - chr3_3:49026105-49026124 Msa0455900:three_prime_UTR 25.0%
!!! TCAATTCTAGAATACTCAAT+TGG + chr3_3:49026303-49026322 None:intergenic 25.0%
!! TACTTCAATTTGGAATCTTA+TGG - chr3_3:49026372-49026391 Msa0455900:CDS 25.0%
! AATATAGAAGCTGCAAAATT+CGG - chr3_3:49026759-49026778 Msa0455900:CDS 25.0%
! GTAACACAATTTATATTCCT+TGG - chr3_3:49027126-49027145 Msa0455900:intron 25.0%
!!! CTGTTTTAAAATGTGAGATT+TGG - chr3_3:49026022-49026041 Msa0455900:three_prime_UTR 25.0%
!! ACTTAGAAGATCAACTTTTA+GGG - chr3_3:49026067-49026086 Msa0455900:three_prime_UTR 25.0%
! TTACCAAAAACTTCAGAAAT+CGG + chr3_3:49026105-49026124 None:intergenic 25.0%
!!! ATTTCTGAAGTTTTTGGTAA+AGG - chr3_3:49026105-49026124 Msa0455900:three_prime_UTR 25.0%
!!! TCAATTCTAGAATACTCAAT+TGG + chr3_3:49026303-49026322 None:intergenic 25.0%
!! TACTTCAATTTGGAATCTTA+TGG - chr3_3:49026372-49026391 Msa0455900:CDS 25.0%
! AATATAGAAGCTGCAAAATT+CGG - chr3_3:49026759-49026778 Msa0455900:CDS 25.0%
! GTAACACAATTTATATTCCT+TGG - chr3_3:49027126-49027145 Msa0455900:intron 25.0%
TCCACAAGAATCATCAATAA+AGG - chr3_3:49025943-49025962 Msa0455900:three_prime_UTR 30.0%
! ACCTTTATTGATGATTCTTG+TGG + chr3_3:49025947-49025966 None:intergenic 30.0%
ACAAGAATCATCAATAAAGG+TGG - chr3_3:49025946-49025965 Msa0455900:three_prime_UTR 30.0%
! CACTTAGAAGATCAACTTTT+AGG - chr3_3:49026066-49026085 Msa0455900:three_prime_UTR 30.0%
TGAATTTCCTGATATCAATG+TGG - chr3_3:49026320-49026339 Msa0455900:CDS 30.0%
! AATCTTATGGTTCTGTTTCA+AGG - chr3_3:49026385-49026404 Msa0455900:CDS 30.0%
GTGATAAAGAGTAATTTGAG+AGG - chr3_3:49026576-49026595 Msa0455900:intron 30.0%
CGAAACTAGAGATGAAAAAA+AGG - chr3_3:49026692-49026711 Msa0455900:intron 30.0%
AAAACGAGACGAATATTGAT+AGG - chr3_3:49026736-49026755 Msa0455900:CDS 30.0%
GATTATCATGATTGTGATCA+AGG + chr3_3:49026923-49026942 None:intergenic 30.0%
ACCGATAAGAAGAAAAATGA+CGG - chr3_3:49026990-49027009 Msa0455900:CDS 30.0%
! GTTTAGTTTATTGTGACTTC+AGG - chr3_3:49027104-49027123 Msa0455900:CDS 30.0%
! TTAACCTCCTCTTTTGTTAA+TGG - chr3_3:49027186-49027205 Msa0455900:CDS 30.0%
ATTGCTTCCATTAACAAAAG+AGG + chr3_3:49027196-49027215 None:intergenic 30.0%
TCCACAAGAATCATCAATAA+AGG - chr3_3:49025943-49025962 Msa0455900:three_prime_UTR 30.0%
! ACCTTTATTGATGATTCTTG+TGG + chr3_3:49025947-49025966 None:intergenic 30.0%
ACAAGAATCATCAATAAAGG+TGG - chr3_3:49025946-49025965 Msa0455900:three_prime_UTR 30.0%
! CACTTAGAAGATCAACTTTT+AGG - chr3_3:49026066-49026085 Msa0455900:three_prime_UTR 30.0%
TGAATTTCCTGATATCAATG+TGG - chr3_3:49026320-49026339 Msa0455900:CDS 30.0%
! AATCTTATGGTTCTGTTTCA+AGG - chr3_3:49026385-49026404 Msa0455900:CDS 30.0%
GTGATAAAGAGTAATTTGAG+AGG - chr3_3:49026576-49026595 Msa0455900:intron 30.0%
CGAAACTAGAGATGAAAAAA+AGG - chr3_3:49026692-49026711 Msa0455900:intron 30.0%
AAAACGAGACGAATATTGAT+AGG - chr3_3:49026736-49026755 Msa0455900:CDS 30.0%
GATTATCATGATTGTGATCA+AGG + chr3_3:49026923-49026942 None:intergenic 30.0%
ACCGATAAGAAGAAAAATGA+CGG - chr3_3:49026990-49027009 Msa0455900:CDS 30.0%
! GTTTAGTTTATTGTGACTTC+AGG - chr3_3:49027104-49027123 Msa0455900:CDS 30.0%
! TTAACCTCCTCTTTTGTTAA+TGG - chr3_3:49027186-49027205 Msa0455900:CDS 30.0%
ATTGCTTCCATTAACAAAAG+AGG + chr3_3:49027196-49027215 None:intergenic 30.0%
GTGAGATTTGGATGTTTAGT+AGG - chr3_3:49026034-49026053 Msa0455900:three_prime_UTR 35.0%
!!! TCAACTTTTAGGGTTTGCTT+TGG - chr3_3:49026077-49026096 Msa0455900:three_prime_UTR 35.0%
!!! GTTCCGATTTCTGAAGTTTT+TGG - chr3_3:49026099-49026118 Msa0455900:three_prime_UTR 35.0%
TGGAGAATGAAAAAGATCAG+TGG + chr3_3:49026160-49026179 None:intergenic 35.0%
GAACTCAAAGTCGAATTGAT+TGG + chr3_3:49026225-49026244 None:intergenic 35.0%
! TTTGAGTTCGAAACCACAAT+CGG - chr3_3:49026236-49026255 Msa0455900:CDS 35.0%
TCATTAGCCACATTGATATC+AGG + chr3_3:49026330-49026349 None:intergenic 35.0%
GGCTAATGAGAATCAGAAAA+TGG - chr3_3:49026341-49026360 Msa0455900:CDS 35.0%
GGTTTGTGAGTACTTCAATT+TGG - chr3_3:49026362-49026381 Msa0455900:CDS 35.0%
GTTTCAAGGCCTAATTCAAT+AGG - chr3_3:49026399-49026418 Msa0455900:CDS 35.0%
! GAACCACTAAGTTGAAGAAA+CGG + chr3_3:49026432-49026451 None:intergenic 35.0%
ATTTCACAGTCAACATCTTG+AGG + chr3_3:49026456-49026475 None:intergenic 35.0%
GAAATGACAATGAATTCGTC+AGG - chr3_3:49026471-49026490 Msa0455900:CDS 35.0%
AGAATCATGAGTCCATTTCT+AGG - chr3_3:49026496-49026515 Msa0455900:CDS 35.0%
AGAGCTTGAAAACCTAGAAA+TGG + chr3_3:49026511-49026530 None:intergenic 35.0%
! AATATTCGTCTCGTTTTCCT+TGG + chr3_3:49026733-49026752 None:intergenic 35.0%
! TCCATATCGATATTTTGTGG+CGG + chr3_3:49026801-49026820 None:intergenic 35.0%
CTTCTTATCGGTCTCTAATT+TGG + chr3_3:49026982-49027001 None:intergenic 35.0%
!!! CCCGTCATTTTTCTTCTTAT+CGG + chr3_3:49026994-49027013 None:intergenic 35.0%
CCGATAAGAAGAAAAATGAC+GGG - chr3_3:49026991-49027010 Msa0455900:CDS 35.0%
AAGAGGAGGTTAAACAACAT+AGG + chr3_3:49027179-49027198 None:intergenic 35.0%
CTCATTGTTATCAATGGCAT+AGG + chr3_3:49027336-49027355 None:intergenic 35.0%
GTGAGATTTGGATGTTTAGT+AGG - chr3_3:49026034-49026053 Msa0455900:three_prime_UTR 35.0%
!!! TCAACTTTTAGGGTTTGCTT+TGG - chr3_3:49026077-49026096 Msa0455900:three_prime_UTR 35.0%
!!! GTTCCGATTTCTGAAGTTTT+TGG - chr3_3:49026099-49026118 Msa0455900:three_prime_UTR 35.0%
TGGAGAATGAAAAAGATCAG+TGG + chr3_3:49026160-49026179 None:intergenic 35.0%
GAACTCAAAGTCGAATTGAT+TGG + chr3_3:49026225-49026244 None:intergenic 35.0%
! TTTGAGTTCGAAACCACAAT+CGG - chr3_3:49026236-49026255 Msa0455900:CDS 35.0%
TCATTAGCCACATTGATATC+AGG + chr3_3:49026330-49026349 None:intergenic 35.0%
GGCTAATGAGAATCAGAAAA+TGG - chr3_3:49026341-49026360 Msa0455900:CDS 35.0%
GGTTTGTGAGTACTTCAATT+TGG - chr3_3:49026362-49026381 Msa0455900:CDS 35.0%
GTTTCAAGGCCTAATTCAAT+AGG - chr3_3:49026399-49026418 Msa0455900:CDS 35.0%
! GAACCACTAAGTTGAAGAAA+CGG + chr3_3:49026432-49026451 None:intergenic 35.0%
ATTTCACAGTCAACATCTTG+AGG + chr3_3:49026456-49026475 None:intergenic 35.0%
GAAATGACAATGAATTCGTC+AGG - chr3_3:49026471-49026490 Msa0455900:CDS 35.0%
AGAATCATGAGTCCATTTCT+AGG - chr3_3:49026496-49026515 Msa0455900:CDS 35.0%
AGAGCTTGAAAACCTAGAAA+TGG + chr3_3:49026511-49026530 None:intergenic 35.0%
! AATATTCGTCTCGTTTTCCT+TGG + chr3_3:49026733-49026752 None:intergenic 35.0%
! TCCATATCGATATTTTGTGG+CGG + chr3_3:49026801-49026820 None:intergenic 35.0%
CTTCTTATCGGTCTCTAATT+TGG + chr3_3:49026982-49027001 None:intergenic 35.0%
!!! CCCGTCATTTTTCTTCTTAT+CGG + chr3_3:49026994-49027013 None:intergenic 35.0%
CCGATAAGAAGAAAAATGAC+GGG - chr3_3:49026991-49027010 Msa0455900:CDS 35.0%
AAGAGGAGGTTAAACAACAT+AGG + chr3_3:49027179-49027198 None:intergenic 35.0%
CTCATTGTTATCAATGGCAT+AGG + chr3_3:49027336-49027355 None:intergenic 35.0%
!! GATCTTTTTCATTCTCCAGC+TGG - chr3_3:49026162-49026181 Msa0455900:CDS 40.0%
GTTAATTGAACAGTTCCAGC+TGG + chr3_3:49026180-49026199 None:intergenic 40.0%
TTGAGTTCGAAACCACAATC+GGG - chr3_3:49026237-49026256 Msa0455900:CDS 40.0%
GATGAATTAGTACCCGATTG+TGG + chr3_3:49026252-49026271 None:intergenic 40.0%
GGCAACGATCCTATTGAATT+AGG + chr3_3:49026411-49026430 None:intergenic 40.0%
! TTGCCGTTTCTTCAACTTAG+TGG - chr3_3:49026426-49026445 Msa0455900:CDS 40.0%
AGCGATGATAGAAACACGAA+CGG - chr3_3:49026546-49026565 Msa0455900:intron 40.0%
! TCTAGTTTCGCTTTCTTCCT+TGG + chr3_3:49026682-49026701 None:intergenic 40.0%
GGAGTTAAAGTTCTCAACCA+AGG - chr3_3:49026713-49026732 Msa0455900:CDS 40.0%
TCCGCCACAAAATATCGATA+TGG - chr3_3:49026797-49026816 Msa0455900:CDS 40.0%
GCCACAAAATATCGATATGG+AGG - chr3_3:49026800-49026819 Msa0455900:CDS 40.0%
! GCCTCCATATCGATATTTTG+TGG + chr3_3:49026804-49026823 None:intergenic 40.0%
! CTTCATTTTCGCCAAAGACT+CGG + chr3_3:49026889-49026908 None:intergenic 40.0%
TGATTGTGATCAAGGTCCAT+TGG + chr3_3:49026915-49026934 None:intergenic 40.0%
AGCTGTCATAACTATCACCA+AGG + chr3_3:49027146-49027165 None:intergenic 40.0%
GCTTCCATTAACAAAAGAGG+AGG + chr3_3:49027193-49027212 None:intergenic 40.0%
!! GATCTTTTTCATTCTCCAGC+TGG - chr3_3:49026162-49026181 Msa0455900:CDS 40.0%
GTTAATTGAACAGTTCCAGC+TGG + chr3_3:49026180-49026199 None:intergenic 40.0%
TTGAGTTCGAAACCACAATC+GGG - chr3_3:49026237-49026256 Msa0455900:CDS 40.0%
GATGAATTAGTACCCGATTG+TGG + chr3_3:49026252-49026271 None:intergenic 40.0%
GGCAACGATCCTATTGAATT+AGG + chr3_3:49026411-49026430 None:intergenic 40.0%
! TTGCCGTTTCTTCAACTTAG+TGG - chr3_3:49026426-49026445 Msa0455900:CDS 40.0%
AGCGATGATAGAAACACGAA+CGG - chr3_3:49026546-49026565 Msa0455900:intron 40.0%
! TCTAGTTTCGCTTTCTTCCT+TGG + chr3_3:49026682-49026701 None:intergenic 40.0%
GGAGTTAAAGTTCTCAACCA+AGG - chr3_3:49026713-49026732 Msa0455900:CDS 40.0%
TCCGCCACAAAATATCGATA+TGG - chr3_3:49026797-49026816 Msa0455900:CDS 40.0%
GCCACAAAATATCGATATGG+AGG - chr3_3:49026800-49026819 Msa0455900:CDS 40.0%
! GCCTCCATATCGATATTTTG+TGG + chr3_3:49026804-49026823 None:intergenic 40.0%
! CTTCATTTTCGCCAAAGACT+CGG + chr3_3:49026889-49026908 None:intergenic 40.0%
TGATTGTGATCAAGGTCCAT+TGG + chr3_3:49026915-49026934 None:intergenic 40.0%
AGCTGTCATAACTATCACCA+AGG + chr3_3:49027146-49027165 None:intergenic 40.0%
GCTTCCATTAACAAAAGAGG+AGG + chr3_3:49027193-49027212 None:intergenic 40.0%
!! TTGTGGAGAGCGTTTCATCA+GGG + chr3_3:49025930-49025949 None:intergenic 45.0%
TCCAGATACTCCAACTTCCA+AGG - chr3_3:49026662-49026681 Msa0455900:intron 45.0%
! TCCTTGGAAGTTGGAGTATC+TGG + chr3_3:49026666-49026685 None:intergenic 45.0%
TCGCTTTCTTCCTTGGAAGT+TGG + chr3_3:49026675-49026694 None:intergenic 45.0%
GCATCAATTCACCGAGTCTT+TGG - chr3_3:49026875-49026894 Msa0455900:CDS 45.0%
GGCGAAAATGAAGCTACCAA+TGG - chr3_3:49026896-49026915 Msa0455900:intron 45.0%
TATATGGCTGCTGCATCAAG+AGG + chr3_3:49027056-49027075 None:intergenic 45.0%
!! TTGTGGAGAGCGTTTCATCA+GGG + chr3_3:49025930-49025949 None:intergenic 45.0%
TCCAGATACTCCAACTTCCA+AGG - chr3_3:49026662-49026681 Msa0455900:intron 45.0%
! TCCTTGGAAGTTGGAGTATC+TGG + chr3_3:49026666-49026685 None:intergenic 45.0%
TCGCTTTCTTCCTTGGAAGT+TGG + chr3_3:49026675-49026694 None:intergenic 45.0%
GCATCAATTCACCGAGTCTT+TGG - chr3_3:49026875-49026894 Msa0455900:CDS 45.0%
GGCGAAAATGAAGCTACCAA+TGG - chr3_3:49026896-49026915 Msa0455900:intron 45.0%
TATATGGCTGCTGCATCAAG+AGG + chr3_3:49027056-49027075 None:intergenic 45.0%
!! CTTGTGGAGAGCGTTTCATC+AGG + chr3_3:49025931-49025950 None:intergenic 50.0%
!! CTTGTGGAGAGCGTTTCATC+AGG + chr3_3:49025931-49025950 None:intergenic 50.0%
! GACGGGTCGCGCGTGTTTTA+TGG - chr3_3:49027008-49027027 Msa0455900:CDS 60.0%
! GACGGGTCGCGCGTGTTTTA+TGG - chr3_3:49027008-49027027 Msa0455900:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 49025832 49027355 49025832 ID=Msa0455900;Name=Msa0455900
chr3_3 mRNA 49025832 49027355 49025832 ID=Msa0455900-mRNA-1;Parent=Msa0455900;Name=Msa0455900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.33|0.25|1|0|0|4|306|335
chr3_3 exon 49025832 49026520 49025832 ID=Msa0455900-mRNA-1:exon:9246;Parent=Msa0455900-mRNA-1
chr3_3 exon 49026695 49026901 49026695 ID=Msa0455900-mRNA-1:exon:9245;Parent=Msa0455900-mRNA-1
chr3_3 exon 49026929 49027131 49026929 ID=Msa0455900-mRNA-1:exon:9244;Parent=Msa0455900-mRNA-1
chr3_3 exon 49027141 49027355 49027141 ID=Msa0455900-mRNA-1:exon:9243;Parent=Msa0455900-mRNA-1
chr3_3 CDS 49027141 49027355 49027141 ID=Msa0455900-mRNA-1:cds;Parent=Msa0455900-mRNA-1
chr3_3 CDS 49026929 49027131 49026929 ID=Msa0455900-mRNA-1:cds;Parent=Msa0455900-mRNA-1
chr3_3 CDS 49026695 49026901 49026695 ID=Msa0455900-mRNA-1:cds;Parent=Msa0455900-mRNA-1
chr3_3 CDS 49026138 49026520 49026138 ID=Msa0455900-mRNA-1:cds;Parent=Msa0455900-mRNA-1
chr3_3 three_prime_UTR 49025832 49026137 49025832 ID=Msa0455900-mRNA-1:three_prime_utr;Parent=Msa0455900-mRNA-1
Gene Sequence

>Msa0455900

TTTCTTGATATATATGTTCATCATGCTAAGAATATTCATAACATATGCATATATGATAATCAAGATGTGTATGCAAAATTCTCTCTTACTTACAACCCTGATGAAACGCTCTCCACAAGAATCATCAATAAAGGTGGAAAAAATCCAATTTTCAATCAAAATTTAAGGGTGAAGATTGTTCAAATTGATGCTGTTTTAAAATGTGAGATTTGGATGTCAAGAAATCACTTAGAAGATCAACTTTTAGGGTTTGCTTTGGTTCCGATTTCTGAAGTTTTTGGTAAAGGAAAAGTGACTGAAGATTATAGTCTCTCTTCCACTGATCTTTTTCATTCTCCAGCTGGAACTGTTCAATTAACTCTTTCATTAGATACATCTTTTCCAATCAATTCGACTTTGAGTTCGAAACCACAATCGGTTGTTTTGCTTGATCCAATTGAGTATTCTAGAATTGAATTTCCTGATATCAATGTGGCTAATGAGAATCAGAAAATGGTTTGTGAGTACTTCAATTTGGAATCTTATGGTTCTGTTTCAAGGCCTAATTCAATAGGATCGTTGCCGTTTCTTCAACTTAGTGGTTCTCCTCAAGATGTTGACTGTGAAATGACAATGAATTCGTCAGATACTCCAACTTCCAAGGAAGAAAGCGAAACTAGAGATGAAAAAAAGGAGTTAAAGTTCTCAACCAAGGAAAACGAGACGAATATTGATAGGAATATAGAAGCTGCAAAATTCGGTCAAGTTTTTTCTGTTCCGCCACAAAATATCGATATGGAGGCTGAGCAATCTTCTATGCAGAAGCAAATAGTTGACATGTATATGAGAAGTATGCATCAATTCACCGAGTCTTTGGCGAAAATGAAGCTACCAATGGACCTTGATCACAATCATGATAATCAAAATCAAGGTGATGTAATTCAAAATCATAAGGATACCAAATTAGAGACCGATAAGAAGAAAAATGACGGGTCGCGCGTGTTTTATGGTAGTCGAGCGTTCTTCTAG
Protein sequence

>Msa0455900

FLDIYVHHAKNIHNICIYDNQDVYAKFSLTYNPDETLSTRIINKGGKNPIFNQNLRVKIVQIDAVLKCEIWMSRNHLEDQLLGFALVPISEVFGKGKVTEDYSLSSTDLFHSPAGTVQLTLSLDTSFPINSTLSSKPQSVVLLDPIEYSRIEFPDINVANENQKMVCEYFNLESYGSVSRPNSIGSLPFLQLSGSPQDVDCEMTMNSSDTPTSKEESETRDEKKELKFSTKENETNIDRNIEAAKFGQVFSVPPQNIDMEAEQSSMQKQIVDMYMRSMHQFTESLAKMKLPMDLDHNHDNQNQGDVIQNHKDTKLETDKKKNDGSRVFYGSRAFF*