AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0326520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326520 MtrunA17_Chr2g0305161 97.884 189 4 0 1 189 1 189 6.64e-139 385
Msa0326520 MtrunA17_Chr4g0065191 46.809 94 40 2 4 97 1 84 2.78e-16 70.9
Msa0326520 MtrunA17_Chr1g0207561 58.333 48 20 0 140 187 198 245 1.77e-14 69.3
Msa0326520 MtrunA17_Chr3g0121201 41.429 70 40 1 117 186 213 281 1.20e-13 68.2
Msa0326520 MtrunA17_Chr1g0169651 55.319 47 21 0 140 186 681 727 8.43e-13 65.9
Msa0326520 MtrunA17_Chr6g0451051 55.319 47 20 1 141 186 65 111 6.73e-12 60.8
Msa0326520 MtrunA17_Chr3g0112041 48.000 50 25 1 135 183 205 254 1.07e-11 62.0
Msa0326520 MtrunA17_Chr8g0336881 45.312 64 32 2 127 187 88 151 7.11e-11 60.1
Msa0326520 MtrunA17_Chr1g0150571 48.837 43 22 0 141 183 232 274 7.17e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0326520 AT2G15580.1 47.264 201 84 6 1 186 1 194 3.68e-51 163
Msa0326520 AT1G49850.1 60.000 50 20 0 137 186 198 247 3.21e-16 74.7
Msa0326520 AT2G15580.3 47.000 100 34 4 1 86 1 95 6.20e-16 70.5
Msa0326520 AT2G15580.2 47.000 100 34 4 1 86 1 95 8.39e-16 70.9
Msa0326520 AT1G55530.1 28.962 183 95 5 9 183 109 264 3.07e-13 67.4
Msa0326520 AT1G55530.2 28.962 183 95 5 9 183 109 264 3.07e-13 67.4
Msa0326520 AT1G04790.1 50.000 48 24 0 139 186 586 633 5.69e-13 67.0
Msa0326520 AT1G55530.3 55.102 49 22 0 135 183 183 231 2.16e-12 64.7
Msa0326520 AT3G13430.4 59.524 42 17 0 142 183 225 266 5.59e-12 63.5
Msa0326520 AT3G13430.3 59.524 42 17 0 142 183 225 266 5.59e-12 63.5
Msa0326520 AT3G13430.1 59.524 42 17 0 142 183 225 266 5.59e-12 63.5
Msa0326520 AT3G13430.2 59.524 42 17 0 142 183 225 266 5.59e-12 63.5
Msa0326520 AT1G68070.1 50.000 50 25 0 138 187 288 337 6.01e-12 63.5
Msa0326520 AT1G74620.1 33.735 83 50 2 109 186 146 228 8.88e-12 62.4
Msa0326520 AT5G20910.1 51.111 45 22 0 139 183 227 271 1.66e-11 62.0
Msa0326520 AT5G08139.1 52.381 42 20 0 142 183 309 350 6.98e-11 60.5

Find 58 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACCTCTTATATTTATT+TGG 0.165927 2_4:+36558187 Msa0326520:five_prime_UTR
TGGAAGCATTCCTGCCATTT+TGG 0.188105 2_4:-36558433 None:intergenic
TATAAGAGGTATTCCTTAAT+AGG 0.257955 2_4:-36558178 None:intergenic
ACAACAAATTTAGACAATTA+AGG 0.274164 2_4:-36559355 None:intergenic
CAGAAAATCCTCCAGACTTA+TGG 0.295617 2_4:-36558485 None:intergenic
GTCCACCGACTCACCTATTA+AGG 0.310277 2_4:+36558165 Msa0326520:five_prime_UTR
GAGTTACAAACTGAGGTATA+TGG 0.311218 2_4:+36559102 Msa0326520:CDS
AAGAAATGAAAAGCTTGTTT+AGG 0.331374 2_4:-36558253 None:intergenic
TTTGTCATCCAATCTTTGTT+TGG 0.351023 2_4:-36558787 None:intergenic
CTCCTACCATATTCTCATCT+TGG 0.373947 2_4:-36558752 None:intergenic
GTCACACCAAGATGAGAATA+TGG 0.386289 2_4:+36558746 Msa0326520:CDS
TTGCTCCAACTGAACTTCCT+TGG 0.389745 2_4:-36559141 None:intergenic
ATTCCACATGCTTGAAGCCT+TGG 0.391055 2_4:+36559265 Msa0326520:CDS
TGAATGATTAGAACTGCTTT+TGG 0.405186 2_4:-36558316 None:intergenic
AAATTTGTTGTAGACTTTGT+TGG 0.406680 2_4:+36559367 Msa0326520:three_prime_UTR
CTTCTAGCTGATTCAACTCC+TGG 0.409347 2_4:-36558453 None:intergenic
TATTTCCTCATCATCTTCAA+TGG 0.411710 2_4:+36558584 Msa0326520:CDS
AGAGGATTGTGCTGTGTGTT+TGG 0.420957 2_4:+36559188 Msa0326520:CDS
AAAATGGCAGGAATGCTTCC+AGG 0.421917 2_4:+36558435 Msa0326520:exon
CCTCTTATATTTATTTGGTT+AGG 0.421945 2_4:+36558192 Msa0326520:five_prime_UTR
AGGAAATAGTGAAAATCTAA+AGG 0.434746 2_4:-36559335 None:intergenic
AGAAGACGTGTCCATAAGTC+TGG 0.443956 2_4:+36558474 Msa0326520:CDS
GTGGACAGAATTAGACCATA+TGG 0.444773 2_4:-36558148 None:intergenic
GGAAATAGTGAAAATCTAAA+GGG 0.456814 2_4:-36559334 None:intergenic
CCTAACCAAATAAATATAAG+AGG 0.459168 2_4:-36558192 None:intergenic
TATTCTCATCTTGGTGTGAC+TGG 0.474654 2_4:-36558743 None:intergenic
TGTTTGGAATCATTTAAGAT+TGG 0.475277 2_4:+36559204 Msa0326520:CDS
ATGAGGAAATACGAGATTCA+TGG 0.479758 2_4:-36558572 None:intergenic
AAAGGGTATCAGAAAACATA+AGG 0.481341 2_4:+36558820 Msa0326520:CDS
GAAAATCTTTAAAACCCATA+TGG 0.482018 2_4:+36558133 None:intergenic
TAGAGCAGCCAAACAAAGAT+TGG 0.490480 2_4:+36558779 Msa0326520:CDS
AATGAAAAGCTTGTTTAGGT+GGG 0.491071 2_4:-36558249 None:intergenic
GAAAATCTAAAGGGAAAGAA+TGG 0.491291 2_4:-36559325 None:intergenic
AAATGAAAAGCTTGTTTAGG+TGG 0.493240 2_4:-36558250 None:intergenic
AGTTACAAACTGAGGTATAT+GGG 0.503707 2_4:+36559103 Msa0326520:CDS
TCAGTTGGAGCAAATTGAGC+TGG 0.509816 2_4:+36559151 Msa0326520:CDS
AACTTGTGTGCACAAGGTAA+AGG 0.529312 2_4:-36559240 None:intergenic
TGGACAGAATTAGACCATAT+GGG 0.533969 2_4:-36558147 None:intergenic
GTGGTCCAAGGAAGTTCAGT+TGG 0.539114 2_4:+36559136 Msa0326520:CDS
ATAATGCTTTGGTGATTGAC+AGG 0.547366 2_4:-36558339 None:intergenic
TGACAAATTCAGATCACAAA+GGG 0.548128 2_4:+36558803 Msa0326520:CDS
TAACCAAGGCTTCAAGCATG+TGG 0.558920 2_4:-36559268 None:intergenic
AAGAACATGAAGTGTGTGGA+AGG 0.571227 2_4:+36559060 Msa0326520:CDS
CTGGAAAGCAACGGAACAAG+AGG 0.575447 2_4:+36559170 Msa0326520:CDS
ACAAACCATTGAAGATGATG+AGG 0.590614 2_4:-36558589 None:intergenic
AAGGCTTCAAGCATGTGGAA+TGG 0.593453 2_4:-36559263 None:intergenic
CAAATTGAGCTGGAAAGCAA+CGG 0.606747 2_4:+36559161 Msa0326520:CDS
GGACAAAGAAAAGTGGTCCA+AGG 0.620165 2_4:+36559124 Msa0326520:CDS
TTCCTTAATAGGTGAGTCGG+TGG 0.622438 2_4:-36558167 None:intergenic
GTATTCCTTAATAGGTGAGT+CGG 0.624545 2_4:-36558170 None:intergenic
GTATATGGGACAAAGAAAAG+TGG 0.626148 2_4:+36559117 Msa0326520:CDS
GAATGGAACTTGTGTGCACA+AGG 0.639361 2_4:-36559246 None:intergenic
CATAGAAGAGTTACAAACTG+AGG 0.641006 2_4:+36559095 Msa0326520:CDS
TTTGTTGGATGAATGAAGTG+AGG 0.658438 2_4:+36559382 Msa0326520:three_prime_UTR
ATGACAAATTCAGATCACAA+AGG 0.661195 2_4:+36558802 Msa0326520:CDS
AGAATGGTAGTTCTACAACA+TGG 0.664178 2_4:-36559309 None:intergenic
CACCAAGATGAGAATATGGT+AGG 0.666185 2_4:+36558750 Msa0326520:CDS
AGACGTGTCCATAAGTCTGG+AGG 0.667088 2_4:+36558477 Msa0326520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATAAAAAAAAAAA+TGG - chr2_4:36558659-36558678 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_4:36558689-36558708 Msa0326520:intron 0.0%
!! AATATATATAAAAAAAAAAA+TGG - chr2_4:36558659-36558678 None:intergenic 0.0%
!! TTATTTATTAATATTATTTA+TGG + chr2_4:36558689-36558708 Msa0326520:intron 0.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_4:36558882-36558901 None:intergenic 10.0%
!!! AAATAAAAAACTATCTTTTT+AGG - chr2_4:36558882-36558901 None:intergenic 10.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_4:36558860-36558879 None:intergenic 15.0%
!!! GAAAATAAATCAAAACTTTT+TGG - chr2_4:36558860-36558879 None:intergenic 15.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_4:36558187-36558206 Msa0326520:five_prime_UTR 20.0%
!!! TGTTTTTGATAATAATGCTT+TGG - chr2_4:36558353-36558372 None:intergenic 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_4:36559358-36559377 None:intergenic 20.0%
!! GAATACCTCTTATATTTATT+TGG + chr2_4:36558187-36558206 Msa0326520:five_prime_UTR 20.0%
!!! TGTTTTTGATAATAATGCTT+TGG - chr2_4:36558353-36558372 None:intergenic 20.0%
!! ACAACAAATTTAGACAATTA+AGG - chr2_4:36559358-36559377 None:intergenic 20.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_4:36558181-36558200 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_4:36558195-36558214 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_4:36558192-36558211 Msa0326520:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+AGG - chr2_4:36558256-36558275 None:intergenic 25.0%
! TTTGTTCAAACACTGAAAAA+AGG + chr2_4:36558409-36558428 Msa0326520:five_prime_UTR 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_4:36558967-36558986 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_4:36559034-36559053 Msa0326520:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_4:36559204-36559223 Msa0326520:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_4:36559285-36559304 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_4:36559337-36559356 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_4:36559338-36559357 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_4:36559367-36559386 Msa0326520:three_prime_UTR 25.0%
!!! TATAAGAGGTATTCCTTAAT+AGG - chr2_4:36558181-36558200 None:intergenic 25.0%
! CCTAACCAAATAAATATAAG+AGG - chr2_4:36558195-36558214 None:intergenic 25.0%
! CCTCTTATATTTATTTGGTT+AGG + chr2_4:36558192-36558211 Msa0326520:five_prime_UTR 25.0%
!! AAGAAATGAAAAGCTTGTTT+AGG - chr2_4:36558256-36558275 None:intergenic 25.0%
! TTTGTTCAAACACTGAAAAA+AGG + chr2_4:36558409-36558428 Msa0326520:five_prime_UTR 25.0%
! ATTAATCAGATCTAAGTTCT+AGG - chr2_4:36558967-36558986 None:intergenic 25.0%
!!! GAAACTTGTTATGTATTACT+AGG + chr2_4:36559034-36559053 Msa0326520:intron 25.0%
!! TGTTTGGAATCATTTAAGAT+TGG + chr2_4:36559204-36559223 Msa0326520:CDS 25.0%
!! TGTGAATTATTTTCTAACCA+AGG - chr2_4:36559285-36559304 None:intergenic 25.0%
! GGAAATAGTGAAAATCTAAA+GGG - chr2_4:36559337-36559356 None:intergenic 25.0%
! AGGAAATAGTGAAAATCTAA+AGG - chr2_4:36559338-36559357 None:intergenic 25.0%
!!! AAATTTGTTGTAGACTTTGT+TGG + chr2_4:36559367-36559386 Msa0326520:three_prime_UTR 25.0%
! AATGAAAAGCTTGTTTAGGT+GGG - chr2_4:36558252-36558271 None:intergenic 30.0%
! AAATGAAAAGCTTGTTTAGG+TGG - chr2_4:36558253-36558272 None:intergenic 30.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_4:36558319-36558338 None:intergenic 30.0%
GTGTTATGAGAAGAAAAAGA+TGG - chr2_4:36558516-36558535 None:intergenic 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_4:36558584-36558603 Msa0326520:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_4:36558790-36558809 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_4:36558802-36558821 Msa0326520:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_4:36558803-36558822 Msa0326520:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_4:36558820-36558839 Msa0326520:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_4:36559103-36559122 Msa0326520:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_4:36559328-36559347 None:intergenic 30.0%
! AATGAAAAGCTTGTTTAGGT+GGG - chr2_4:36558252-36558271 None:intergenic 30.0%
! AAATGAAAAGCTTGTTTAGG+TGG - chr2_4:36558253-36558272 None:intergenic 30.0%
! TGAATGATTAGAACTGCTTT+TGG - chr2_4:36558319-36558338 None:intergenic 30.0%
GTGTTATGAGAAGAAAAAGA+TGG - chr2_4:36558516-36558535 None:intergenic 30.0%
TATTTCCTCATCATCTTCAA+TGG + chr2_4:36558584-36558603 Msa0326520:CDS 30.0%
TTTGTCATCCAATCTTTGTT+TGG - chr2_4:36558790-36558809 None:intergenic 30.0%
ATGACAAATTCAGATCACAA+AGG + chr2_4:36558802-36558821 Msa0326520:CDS 30.0%
TGACAAATTCAGATCACAAA+GGG + chr2_4:36558803-36558822 Msa0326520:CDS 30.0%
!! AAAGGGTATCAGAAAACATA+AGG + chr2_4:36558820-36558839 Msa0326520:CDS 30.0%
AGTTACAAACTGAGGTATAT+GGG + chr2_4:36559103-36559122 Msa0326520:CDS 30.0%
GAAAATCTAAAGGGAAAGAA+TGG - chr2_4:36559328-36559347 None:intergenic 30.0%
TGGACAGAATTAGACCATAT+GGG - chr2_4:36558150-36558169 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_4:36558173-36558192 None:intergenic 35.0%
! ATAATGCTTTGGTGATTGAC+AGG - chr2_4:36558342-36558361 None:intergenic 35.0%
CACTGAAAAAAGGACCAAAA+TGG + chr2_4:36558419-36558438 Msa0326520:exon 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_4:36558575-36558594 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_4:36558592-36558611 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_4:36559056-36559075 Msa0326520:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_4:36559095-36559114 Msa0326520:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_4:36559102-36559121 Msa0326520:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_4:36559117-36559136 Msa0326520:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_4:36559312-36559331 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_4:36559382-36559401 Msa0326520:three_prime_UTR 35.0%
TGGACAGAATTAGACCATAT+GGG - chr2_4:36558150-36558169 None:intergenic 35.0%
GTATTCCTTAATAGGTGAGT+CGG - chr2_4:36558173-36558192 None:intergenic 35.0%
! ATAATGCTTTGGTGATTGAC+AGG - chr2_4:36558342-36558361 None:intergenic 35.0%
CACTGAAAAAAGGACCAAAA+TGG + chr2_4:36558419-36558438 Msa0326520:exon 35.0%
ATGAGGAAATACGAGATTCA+TGG - chr2_4:36558575-36558594 None:intergenic 35.0%
ACAAACCATTGAAGATGATG+AGG - chr2_4:36558592-36558611 None:intergenic 35.0%
GAAAAAGAACATGAAGTGTG+TGG + chr2_4:36559056-36559075 Msa0326520:CDS 35.0%
CATAGAAGAGTTACAAACTG+AGG + chr2_4:36559095-36559114 Msa0326520:CDS 35.0%
GAGTTACAAACTGAGGTATA+TGG + chr2_4:36559102-36559121 Msa0326520:CDS 35.0%
GTATATGGGACAAAGAAAAG+TGG + chr2_4:36559117-36559136 Msa0326520:CDS 35.0%
! AGAATGGTAGTTCTACAACA+TGG - chr2_4:36559312-36559331 None:intergenic 35.0%
TTTGTTGGATGAATGAAGTG+AGG + chr2_4:36559382-36559401 Msa0326520:three_prime_UTR 35.0%
GTGGACAGAATTAGACCATA+TGG - chr2_4:36558151-36558170 None:intergenic 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_4:36558423-36558442 Msa0326520:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_4:36558488-36558507 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_4:36558538-36558557 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_4:36558746-36558765 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_4:36558746-36558765 Msa0326520:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_4:36558750-36558769 Msa0326520:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_4:36558755-36558774 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_4:36558779-36558798 Msa0326520:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_4:36559060-36559079 Msa0326520:CDS 40.0%
CAAATTGAGCTGGAAAGCAA+CGG + chr2_4:36559161-36559180 Msa0326520:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_4:36559243-36559262 None:intergenic 40.0%
GTGGACAGAATTAGACCATA+TGG - chr2_4:36558151-36558170 None:intergenic 40.0%
GAAAAAAGGACCAAAATGGC+AGG + chr2_4:36558423-36558442 Msa0326520:exon 40.0%
CAGAAAATCCTCCAGACTTA+TGG - chr2_4:36558488-36558507 None:intergenic 40.0%
!! ACAAAAAGAAGAGCGTCTTG+AGG - chr2_4:36558538-36558557 None:intergenic 40.0%
! TATTCTCATCTTGGTGTGAC+TGG - chr2_4:36558746-36558765 None:intergenic 40.0%
GTCACACCAAGATGAGAATA+TGG + chr2_4:36558746-36558765 Msa0326520:CDS 40.0%
CACCAAGATGAGAATATGGT+AGG + chr2_4:36558750-36558769 Msa0326520:CDS 40.0%
CTCCTACCATATTCTCATCT+TGG - chr2_4:36558755-36558774 None:intergenic 40.0%
TAGAGCAGCCAAACAAAGAT+TGG + chr2_4:36558779-36558798 Msa0326520:CDS 40.0%
AAGAACATGAAGTGTGTGGA+AGG + chr2_4:36559060-36559079 Msa0326520:CDS 40.0%
CAAATTGAGCTGGAAAGCAA+CGG + chr2_4:36559161-36559180 Msa0326520:CDS 40.0%
AACTTGTGTGCACAAGGTAA+AGG - chr2_4:36559243-36559262 None:intergenic 40.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_4:36558170-36558189 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_4:36558306-36558325 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_4:36558307-36558326 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_4:36558436-36558455 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_4:36558435-36558454 Msa0326520:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_4:36558456-36558475 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_4:36558474-36558493 Msa0326520:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_4:36559124-36559143 Msa0326520:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_4:36559144-36559163 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_4:36559151-36559170 Msa0326520:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_4:36559188-36559207 Msa0326520:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_4:36559249-36559268 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_4:36559266-36559285 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_4:36559265-36559284 Msa0326520:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_4:36559271-36559290 None:intergenic 45.0%
TTCCTTAATAGGTGAGTCGG+TGG - chr2_4:36558170-36558189 None:intergenic 45.0%
!!! CTGCTTTTGGTGATGCTAGT+GGG - chr2_4:36558306-36558325 None:intergenic 45.0%
!!! ACTGCTTTTGGTGATGCTAG+TGG - chr2_4:36558307-36558326 None:intergenic 45.0%
!!! TGGAAGCATTCCTGCCATTT+TGG - chr2_4:36558436-36558455 None:intergenic 45.0%
AAAATGGCAGGAATGCTTCC+AGG + chr2_4:36558435-36558454 Msa0326520:exon 45.0%
! CTTCTAGCTGATTCAACTCC+TGG - chr2_4:36558456-36558475 None:intergenic 45.0%
AGAAGACGTGTCCATAAGTC+TGG + chr2_4:36558474-36558493 Msa0326520:CDS 45.0%
GGACAAAGAAAAGTGGTCCA+AGG + chr2_4:36559124-36559143 Msa0326520:CDS 45.0%
TTGCTCCAACTGAACTTCCT+TGG - chr2_4:36559144-36559163 None:intergenic 45.0%
TCAGTTGGAGCAAATTGAGC+TGG + chr2_4:36559151-36559170 Msa0326520:CDS 45.0%
AGAGGATTGTGCTGTGTGTT+TGG + chr2_4:36559188-36559207 Msa0326520:CDS 45.0%
GAATGGAACTTGTGTGCACA+AGG - chr2_4:36559249-36559268 None:intergenic 45.0%
AAGGCTTCAAGCATGTGGAA+TGG - chr2_4:36559266-36559285 None:intergenic 45.0%
ATTCCACATGCTTGAAGCCT+TGG + chr2_4:36559265-36559284 Msa0326520:CDS 45.0%
TAACCAAGGCTTCAAGCATG+TGG - chr2_4:36559271-36559290 None:intergenic 45.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_4:36558165-36558184 Msa0326520:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_4:36558477-36558496 Msa0326520:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_4:36559136-36559155 Msa0326520:CDS 50.0%
CTGGAAAGCAACGGAACAAG+AGG + chr2_4:36559170-36559189 Msa0326520:CDS 50.0%
!! GTCCACCGACTCACCTATTA+AGG + chr2_4:36558165-36558184 Msa0326520:five_prime_UTR 50.0%
AGACGTGTCCATAAGTCTGG+AGG + chr2_4:36558477-36558496 Msa0326520:CDS 50.0%
GTGGTCCAAGGAAGTTCAGT+TGG + chr2_4:36559136-36559155 Msa0326520:CDS 50.0%
CTGGAAAGCAACGGAACAAG+AGG + chr2_4:36559170-36559189 Msa0326520:CDS 50.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 36558134 36559411 36558134 ID=Msa0326520;Name=Msa0326520
chr2_4 mRNA 36558134 36559411 36558134 ID=Msa0326520-mRNA-1;Parent=Msa0326520;Name=Msa0326520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=304|1|1|1|1|1|3|70|189
chr2_4 exon 36558134 36558605 36558134 ID=Msa0326520-mRNA-1:exon:11232;Parent=Msa0326520-mRNA-1
chr2_4 exon 36558726 36558841 36558726 ID=Msa0326520-mRNA-1:exon:11233;Parent=Msa0326520-mRNA-1
chr2_4 exon 36559056 36559411 36559056 ID=Msa0326520-mRNA-1:exon:11234;Parent=Msa0326520-mRNA-1
chr2_4 five_prime_UTR 36558134 36558437 36558134 ID=Msa0326520-mRNA-1:five_prime_utr;Parent=Msa0326520-mRNA-1
chr2_4 CDS 36558438 36558605 36558438 ID=Msa0326520-mRNA-1:cds;Parent=Msa0326520-mRNA-1
chr2_4 CDS 36558726 36558841 36558726 ID=Msa0326520-mRNA-1:cds;Parent=Msa0326520-mRNA-1
chr2_4 CDS 36559056 36559341 36559056 ID=Msa0326520-mRNA-1:cds;Parent=Msa0326520-mRNA-1
chr2_4 three_prime_UTR 36559342 36559411 36559342 ID=Msa0326520-mRNA-1:three_prime_utr;Parent=Msa0326520-mRNA-1
Gene Sequence

>Msa0326520

ATGGCAGGAATGCTTCCAGGAGTTGAATCAGCTAGAAGAAGACGTGTCCATAAGTCTGGAGGATTTTCTGATTCACCATCTTTTTCTTCTCATAACACCTCAAGACGCTCTTCTTTTTGTTTGTATGCAAGTAACCATGAATCTCGTATTTCCTCATCATCTTCAATGCAAAGAAATATATTATACCAGTCACACCAAGATGAGAATATGGTAGGAGCAGCTAGAGCAGCCAAACAAAGATTGGATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGAAAAAGAACATGAAGTGTGTGGAAGGTAGAAACGAAAGCATAGAAGAGTTACAAACTGAGGTATATGGGACAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAAGCAACGGAACAAGAGGATTGTGCTGTGTGTTTGGAATCATTTAAGATTGGAGACAAATTGATTCCTTTACCTTGTGCACACAAGTTCCATTCCACATGCTTGAAGCCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTTTAG

Protein sequence

>Msa0326520

MAGMLPGVESARRRRVHKSGGFSDSPSFSSHNTSRRSSFCLYASNHESRISSSSSMQRNILYQSHQDENMVGAARAAKQRLDDKFRSQRVSENIRKKNMKCVEGRNESIEELQTEVYGTKKSGPRKFSWSKLSWKATEQEDCAVCLESFKIGDKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL*