Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580940 | XP_013450668.1 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580940 | sp|Q93V51|PSE1_ARATH | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.35e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580940 | I3SHV8 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063190 | Msa0580940 | 0.834365 | 3.127014e-56 | -8.615850e-47 |
| Msa0100600 | Msa0580940 | 0.800741 | 1.249893e-48 | -8.615850e-47 |
| Msa0108630 | Msa0580940 | 0.831568 | 1.550422e-55 | -8.615850e-47 |
| Msa0172590 | Msa0580940 | 0.805460 | 1.320612e-49 | -8.615850e-47 |
| Msa0195440 | Msa0580940 | 0.821634 | 3.637914e-53 | -8.615850e-47 |
| Msa0237240 | Msa0580940 | 0.825000 | 5.950501e-54 | -8.615850e-47 |
| Msa0401060 | Msa0580940 | 0.842566 | 2.390813e-58 | -8.615850e-47 |
| Msa0447870 | Msa0580940 | 0.815132 | 1.081265e-51 | -8.615850e-47 |
| Msa0461560 | Msa0580940 | 0.811649 | 6.297909e-51 | -8.615850e-47 |
| Msa0465610 | Msa0580940 | 0.821978 | 3.028133e-53 | -8.615850e-47 |
| Msa0257300 | Msa0580940 | 0.809099 | 2.236806e-50 | -8.615850e-47 |
| Msa0296600 | Msa0580940 | 0.839738 | 1.324141e-57 | -8.615850e-47 |
| Msa0331110 | Msa0580940 | 0.802442 | 5.600009e-49 | -8.615850e-47 |
| Msa0332560 | Msa0580940 | 0.801520 | 8.663608e-49 | -8.615850e-47 |
| Msa0334990 | Msa0580940 | 0.824376 | 8.345895e-54 | -8.615850e-47 |
| Msa0356640 | Msa0580940 | 0.815771 | 7.795281e-52 | -8.615850e-47 |
| Msa0495620 | Msa0580940 | 0.818845 | 1.584791e-52 | -8.615850e-47 |
| Msa0521510 | Msa0580940 | 0.802576 | 5.253627e-49 | -8.615850e-47 |
| Msa0536410 | Msa0580940 | 0.801382 | 9.243288e-49 | -8.615850e-47 |
| Msa0537990 | Msa0580940 | 0.808198 | 3.484994e-50 | -8.615850e-47 |
| Msa0552570 | Msa0580940 | 0.816275 | 6.012981e-52 | -8.615850e-47 |
| Msa0571350 | Msa0580940 | 0.840215 | 9.942547e-58 | -8.615850e-47 |
| Msa0572830 | Msa0580940 | 0.802657 | 5.055608e-49 | -8.615850e-47 |
| Msa0574660 | Msa0580940 | 0.801074 | 1.068759e-48 | -8.615850e-47 |
| Msa0576330 | Msa0580940 | 0.819557 | 1.091256e-52 | -8.615850e-47 |
| Msa0580940 | Msa0625340 | 0.805906 | 1.064398e-49 | -8.615850e-47 |
| Msa0580940 | Msa0660260 | 0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa0580940 | Msa0687090 | 0.804516 | 2.080366e-49 | -8.615850e-47 |
| Msa0580940 | Msa0752230 | 0.803527 | 3.340620e-49 | -8.615850e-47 |
| Msa0580940 | Msa0774060 | 0.812381 | 4.362181e-51 | -8.615850e-47 |
| Msa0580940 | Msa0827420 | 0.804412 | 2.187011e-49 | -8.615850e-47 |
| Msa0580940 | Msa0901150 | 0.831892 | 1.289819e-55 | -8.615850e-47 |
| Msa0580940 | Msa0926080 | 0.820523 | 6.558562e-53 | -8.615850e-47 |
| Msa0580940 | Msa0966710 | 0.819838 | 9.412597e-53 | -8.615850e-47 |
| Msa0580940 | Msa1000970 | 0.814361 | 1.602213e-51 | -8.615850e-47 |
| Msa0580940 | Msa1078080 | 0.830247 | 3.270472e-55 | -8.615850e-47 |
| Msa0580940 | Msa1085680 | 0.818050 | 2.399086e-52 | -8.615850e-47 |
| Msa0580940 | Msa1138800 | 0.807394 | 5.164472e-50 | -8.615850e-47 |
| Msa0580940 | Msa1144990 | 0.806094 | 9.717863e-50 | -8.615850e-47 |
| Msa0580940 | Msa1212700 | 0.879601 | 1.090798e-69 | -8.615850e-47 |
| Msa0580940 | Msa1212920 | 0.880442 | 5.469844e-70 | -8.615850e-47 |
| Msa0580940 | Msa1216090 | 0.825770 | 3.910043e-54 | -8.615850e-47 |
| Msa0580940 | Msa1216340 | 0.833646 | 4.732417e-56 | -8.615850e-47 |
| Msa0580940 | Msa1236150 | 0.825715 | 4.029729e-54 | -8.615850e-47 |
| Msa0580940 | Msa1299980 | 0.831846 | 1.324127e-55 | -8.615850e-47 |
| Msa0580940 | Msa1301980 | 0.849549 | 3.011771e-60 | -8.615850e-47 |
| Msa0580940 | Msa1302000 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
| Msa0580940 | Msa1308860 | 0.810700 | 1.011985e-50 | -8.615850e-47 |
| Msa0580940 | Msa1331650 | 0.871137 | 8.590076e-67 | -8.615850e-47 |
| Msa0580940 | Msa1333500 | 0.854932 | 8.853178e-62 | -8.615850e-47 |
| Msa0580940 | Msa1342810 | 0.805386 | 1.368928e-49 | -8.615850e-47 |
| Msa0580940 | Msa1363010 | 0.800959 | 1.128219e-48 | -8.615850e-47 |
| Msa0580940 | Msa1368170 | 0.850500 | 1.631380e-60 | -8.615850e-47 |
| Msa0580940 | Msa1385570 | 0.835607 | 1.520838e-56 | -8.615850e-47 |
| Msa0580940 | Msa1389820 | 0.801287 | 9.669607e-49 | -8.615850e-47 |
| Msa0580940 | Msa1393850 | 0.808163 | 3.544174e-50 | -8.615850e-47 |
| Msa0580940 | Msa1408160 | 0.995164 | 1.300686e-213 | -8.615850e-47 |
| Msa0580940 | Msa1419900 | 0.804874 | 1.752159e-49 | -8.615850e-47 |
| Msa0580940 | Msa1420830 | 0.833637 | 4.756472e-56 | -8.615850e-47 |
| Msa0580940 | Msa1448960 | 0.992030 | 6.638265e-191 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580940 | MtrunA17_Chr7g0275931 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Msa0580940 | MtrunA17_Chr1g0177711 | 52.917 | 240 | 109 | 2 | 1 | 237 | 1 | 239 | 4.90e-89 | 265 |
| Msa0580940 | MtrunA17_Chr5g0433261 | 51.464 | 239 | 105 | 3 | 1 | 232 | 1 | 235 | 1.40e-76 | 232 |
| Msa0580940 | MtrunA17_Chr3g0109371 | 44.351 | 239 | 110 | 5 | 1 | 226 | 17 | 245 | 4.18e-62 | 196 |
| Msa0580940 | MtrunA17_Chr3g0109361 | 36.576 | 257 | 113 | 5 | 8 | 222 | 2 | 250 | 5.01e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580940 | AT1G01225.1 | 75.424 | 236 | 57 | 1 | 1 | 236 | 1 | 235 | 2.76e-135 | 382 |
| Msa0580940 | AT4G00905.1 | 71.255 | 247 | 62 | 1 | 1 | 238 | 1 | 247 | 3.02e-130 | 369 |
| Msa0580940 | AT5G06370.1 | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.45e-86 | 256 |
| Msa0580940 | AT3G02700.1 | 51.653 | 242 | 105 | 5 | 1 | 236 | 1 | 236 | 1.46e-75 | 230 |
| Msa0580940 | AT5G16360.1 | 41.912 | 272 | 122 | 6 | 1 | 237 | 1 | 271 | 4.37e-63 | 199 |
| Msa0580940 | AT5G16330.1 | 43.750 | 240 | 107 | 5 | 1 | 232 | 9 | 228 | 9.47e-58 | 184 |
Find 87 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATGTATCTTCTTCAAAA+TGG | 0.253229 | 4_1:+86243127 | Msa0580940:CDS |
| GGTCAAGCTTCTTCTGTTAT+TGG | 0.264756 | 4_1:+86243250 | Msa0580940:CDS |
| TATCTTCTTCAAAATGGTTT+TGG | 0.282564 | 4_1:+86243133 | Msa0580940:CDS |
| GCTCGATGGATAACAGTTTC+AGG | 0.291481 | 4_1:-86243106 | None:intergenic |
| CCTTTCCTGATTGTGGGTTC+AGG | 0.306141 | 4_1:+86242939 | Msa0580940:CDS |
| ATCTGCTGAATTGATATATA+AGG | 0.319784 | 4_1:+86243614 | Msa0580940:three_prime_UTR |
| ATTGACTTAAAGTTTCTATC+AGG | 0.325786 | 4_1:-86242866 | None:intergenic |
| GTCCCACCTTTCCTGATTGT+GGG | 0.332185 | 4_1:+86242933 | Msa0580940:CDS |
| TTTGCAATGTACTGCAAAAC+TGG | 0.342481 | 4_1:+86243190 | Msa0580940:CDS |
| TGTCCCACCTTTCCTGATTG+TGG | 0.372248 | 4_1:+86242932 | Msa0580940:CDS |
| AGAAGACTTGGCTGTGAACT+TGG | 0.382220 | 4_1:+86243420 | Msa0580940:CDS |
| GAAGAAAGCATTGCAGCTAA+TGG | 0.389297 | 4_1:-86243277 | None:intergenic |
| GTGGGTGGGGTGGAGTGGAG+TGG | 0.398042 | 4_1:+86241513 | Msa0580940:five_prime_UTR |
| GAAGTGATGTGGTCAAGGTT+GGG | 0.403253 | 4_1:+86243395 | Msa0580940:CDS |
| TGCAGATGAGAACACTATAT+TGG | 0.412285 | 4_1:+86243851 | Msa0580940:three_prime_UTR |
| TAGCTAAATCATATGATAAT+CGG | 0.420349 | 4_1:-86243496 | None:intergenic |
| GTGGAGTGGACTAAGGTAAG+AGG | 0.430880 | 4_1:+86241527 | Msa0580940:five_prime_UTR |
| TTATTGGATTCCATTTCAAT+TGG | 0.435157 | 4_1:-86241448 | None:intergenic |
| AAACGGTGGGTGGGGTGGAG+TGG | 0.436800 | 4_1:+86241508 | Msa0580940:five_prime_UTR |
| AGTGGTTCGGTTACAATTGA+AGG | 0.452856 | 4_1:-86243822 | None:intergenic |
| ATTGTAGACAAGCAAGGAGT+TGG | 0.458301 | 4_1:+86243220 | Msa0580940:CDS |
| GGGTGGAGTGGAGTGGACTA+AGG | 0.468265 | 4_1:+86241520 | Msa0580940:five_prime_UTR |
| CAAGTTACTCATGTTGTACA+TGG | 0.470133 | 4_1:+86243691 | Msa0580940:three_prime_UTR |
| AAGTGATGTGGTCAAGGTTG+GGG | 0.470724 | 4_1:+86243396 | Msa0580940:CDS |
| GGTTGCCTGAACCCACAATC+AGG | 0.472264 | 4_1:-86242944 | None:intergenic |
| TTGATCTGAATAGAAGTGAA+TGG | 0.473662 | 4_1:+86241597 | Msa0580940:exon |
| TCCGATGAGGAGGAGGTAGT+TGG | 0.476309 | 4_1:+86243454 | Msa0580940:CDS |
| AGACAGACAAACGGTGGGTG+GGG | 0.476537 | 4_1:+86241500 | Msa0580940:five_prime_UTR |
| GAAAGAACTACTCCACTATT+CGG | 0.477232 | 4_1:-86242965 | None:intergenic |
| TGATCTGAATAGAAGTGAAT+GGG | 0.478948 | 4_1:+86241598 | Msa0580940:exon |
| AGAAGTGATGTGGTCAAGGT+TGG | 0.486475 | 4_1:+86243394 | Msa0580940:CDS |
| CAATCAGGAAAGGTGGGACA+AGG | 0.488425 | 4_1:-86242929 | None:intergenic |
| GTGGGACAAGGGGTTGGTGT+TGG | 0.491703 | 4_1:-86242917 | None:intergenic |
| TGGGTGGGGACCAATTGAAA+TGG | 0.492897 | 4_1:+86241438 | None:intergenic |
| CAAGGTTGGGGTAGAAGACT+TGG | 0.494212 | 4_1:+86243408 | Msa0580940:CDS |
| ATCTGCACAGCAAAGTGGTT+CGG | 0.499108 | 4_1:-86243835 | None:intergenic |
| GGGTTCAGGCAACCGAATAG+TGG | 0.509445 | 4_1:+86242953 | Msa0580940:CDS |
| ATAACAGTTTCAGGTGGGTC+GGG | 0.514072 | 4_1:-86243097 | None:intergenic |
| TTAGACTGCTTCCTTCGAAA+CGG | 0.516654 | 4_1:+86242992 | Msa0580940:CDS |
| AAGCAAGGAGTTGGAAGAAG+TGG | 0.518050 | 4_1:+86243229 | Msa0580940:CDS |
| ATTACTTCTAAGCTACCAAA+TGG | 0.521090 | 4_1:-86243790 | None:intergenic |
| GCACGTGCCACCTCTTATCC+TGG | 0.523495 | 4_1:-86243062 | None:intergenic |
| AGCTTGACCGTGATGAGAAT+AGG | 0.526450 | 4_1:-86241695 | None:intergenic |
| ATAGGAGAAAACAGCTCTGT+AGG | 0.528737 | 4_1:-86241677 | None:intergenic |
| GGAAAGGTGGGACAAGGGGT+TGG | 0.535853 | 4_1:-86242923 | None:intergenic |
| GACTTGTTCCGATGAGGAGG+AGG | 0.537304 | 4_1:+86243447 | Msa0580940:CDS |
| GAGGAGGAGGTAGTTGGAGA+TGG | 0.545453 | 4_1:+86243460 | Msa0580940:CDS |
| GTTACCGTAGCCATACCAAC+AGG | 0.545756 | 4_1:-86243325 | None:intergenic |
| TTGTTAATGCCGAGTCCTGT+TGG | 0.549441 | 4_1:+86243310 | Msa0580940:CDS |
| GATAACAGTTTCAGGTGGGT+CGG | 0.549630 | 4_1:-86243098 | None:intergenic |
| CAGACAAACGGTGGGTGGGG+TGG | 0.550312 | 4_1:+86241503 | Msa0580940:five_prime_UTR |
| ATTCAGCAGATGTAAAATGA+AGG | 0.550749 | 4_1:-86243602 | None:intergenic |
| AGTAGATATGCAACTGACAT+TGG | 0.566026 | 4_1:+86243367 | Msa0580940:CDS |
| GTAGGTGTAGACATGATCAC+CGG | 0.568352 | 4_1:-86241659 | None:intergenic |
| ACTTGGCTGTGAACTTGGGA+TGG | 0.569461 | 4_1:+86243425 | Msa0580940:CDS |
| GTTCGGTTACAATTGAAGGT+AGG | 0.569462 | 4_1:-86243818 | None:intergenic |
| GAGAGACACGACATCAAACC+CGG | 0.570178 | 4_1:+86241640 | Msa0580940:CDS |
| AATCCAATAATATTGAAAAG+TGG | 0.577825 | 4_1:+86241461 | Msa0580940:five_prime_UTR |
| CAGACAGACAAACGGTGGGT+GGG | 0.578813 | 4_1:+86241499 | Msa0580940:five_prime_UTR |
| AATGCCGAGTCCTGTTGGTA+TGG | 0.579949 | 4_1:+86243315 | Msa0580940:CDS |
| ATCAGGAAAGGTGGGACAAG+GGG | 0.583759 | 4_1:-86242927 | None:intergenic |
| AGTAAAGAGAACCGTTTCGA+AGG | 0.585696 | 4_1:-86243003 | None:intergenic |
| TCCAACTACCTCCTCCTCAT+CGG | 0.586315 | 4_1:-86243455 | None:intergenic |
| CATTAGAAGTGATGTGGTCA+AGG | 0.589386 | 4_1:+86243390 | Msa0580940:CDS |
| ATGGACTTGTTCCGATGAGG+AGG | 0.591554 | 4_1:+86243444 | Msa0580940:CDS |
| ACAGACAGACAAACGGTGGG+TGG | 0.592132 | 4_1:+86241498 | Msa0580940:five_prime_UTR |
| AATCAGGAAAGGTGGGACAA+GGG | 0.592653 | 4_1:-86242928 | None:intergenic |
| GAGTCCTGTTGGTATGGCTA+CGG | 0.594150 | 4_1:+86243321 | Msa0580940:CDS |
| CGATGGATAACAGTTTCAGG+TGG | 0.599166 | 4_1:-86243103 | None:intergenic |
| GAAGACTTGGCTGTGAACTT+GGG | 0.599819 | 4_1:+86243421 | Msa0580940:CDS |
| GAACCCACAATCAGGAAAGG+TGG | 0.600274 | 4_1:-86242936 | None:intergenic |
| GGTATGGCTACGGTAACAGC+AGG | 0.600551 | 4_1:+86243331 | Msa0580940:CDS |
| AACCCACAATCAGGAAAGGT+GGG | 0.602727 | 4_1:-86242935 | None:intergenic |
| GAAGAAGATACATTGCTCGA+TGG | 0.604177 | 4_1:-86243120 | None:intergenic |
| CAGTAACACAGACAGACAAA+CGG | 0.610216 | 4_1:+86241491 | Msa0580940:five_prime_UTR |
| TTCTCATCTGCACAGCAAAG+TGG | 0.618458 | 4_1:-86243840 | None:intergenic |
| CTCGGCATTAACAACTTGAG+AGG | 0.635148 | 4_1:-86243301 | None:intergenic |
| CCTGAACCCACAATCAGGAA+AGG | 0.637605 | 4_1:-86242939 | None:intergenic |
| TTTCTTACCAGGATAAGAGG+TGG | 0.640216 | 4_1:+86243055 | Msa0580940:CDS |
| GGGATGGACTTGTTCCGATG+AGG | 0.647617 | 4_1:+86243441 | Msa0580940:CDS |
| TAACACAGACAGACAAACGG+TGG | 0.673793 | 4_1:+86241494 | Msa0580940:five_prime_UTR |
| GATGGATAACAGTTTCAGGT+GGG | 0.675658 | 4_1:-86243102 | None:intergenic |
| GTAGCCATACCAACAGGACT+CGG | 0.681475 | 4_1:-86243319 | None:intergenic |
| AACACAGACAGACAAACGGT+GGG | 0.681621 | 4_1:+86241495 | Msa0580940:five_prime_UTR |
| TAGGTGTAGACATGATCACC+GGG | 0.692039 | 4_1:-86241658 | None:intergenic |
| CATTGGCATTAGAAGTGATG+TGG | 0.712623 | 4_1:+86243384 | Msa0580940:CDS |
| AAGTTACTCATGTTGTACAT+GGG | 0.721681 | 4_1:+86243692 | Msa0580940:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATATTCATAATGATTT+TGG | + | chr4_1:86242740-86242759 | Msa0580940:intron | 15.0% |
| !! | AATCCAATAATATTGAAAAG+TGG | + | chr4_1:86241461-86241480 | Msa0580940:five_prime_UTR | 20.0% |
| !!! | TTGTTATTCTTTTGTTTTGT+TGG | + | chr4_1:86241767-86241786 | Msa0580940:intron | 20.0% |
| !!! | TATATTTTCTGCTTATTTCT+CGG | + | chr4_1:86241870-86241889 | Msa0580940:intron | 20.0% |
| !!! | AAATTCATTTTTATCACTCT+AGG | + | chr4_1:86242328-86242347 | Msa0580940:intron | 20.0% |
| !! | TAGCTAAATCATATGATAAT+CGG | - | chr4_1:86243499-86243518 | None:intergenic | 20.0% |
| !! | AAAAGAAAAAGAAAAGAGAA+AGG | - | chr4_1:86243640-86243659 | None:intergenic | 20.0% |
| !!! | GTATCTTTTACAATAATAGT+TGG | + | chr4_1:86243665-86243684 | Msa0580940:three_prime_UTR | 20.0% |
| ! | TTATTGGATTCCATTTCAAT+TGG | - | chr4_1:86241451-86241470 | None:intergenic | 25.0% |
| !!! | TTGCCACTTTTCAATATTAT+TGG | - | chr4_1:86241467-86241486 | None:intergenic | 25.0% |
| ! | ACAATAACAAAATAGCAGAT+TGG | - | chr4_1:86241751-86241770 | None:intergenic | 25.0% |
| !! | TTTCAAGCGTTTGATTTAAA+TGG | - | chr4_1:86241968-86241987 | None:intergenic | 25.0% |
| !! | TCAATGAAATTTCTGTTTTG+AGG | + | chr4_1:86242152-86242171 | Msa0580940:intron | 25.0% |
| !!! | CAATGAAATTTCTGTTTTGA+GGG | + | chr4_1:86242153-86242172 | Msa0580940:intron | 25.0% |
| !!! | TGGTTGATAACATATTGATT+TGG | - | chr4_1:86242363-86242382 | None:intergenic | 25.0% |
| ! | ACTAAGTAAGTAGTAAAAAC+TGG | - | chr4_1:86242388-86242407 | None:intergenic | 25.0% |
| !!! | CATTCTGTTTTTCATCATTT+CGG | + | chr4_1:86242423-86242442 | Msa0580940:intron | 25.0% |
| !!! | ATTCTGTTTTTCATCATTTC+GGG | + | chr4_1:86242424-86242443 | Msa0580940:intron | 25.0% |
| ! | CAGAATTCTGACTAATTAAT+TGG | - | chr4_1:86242630-86242649 | None:intergenic | 25.0% |
| !! | ATTGACTTAAAGTTTCTATC+AGG | - | chr4_1:86242869-86242888 | None:intergenic | 25.0% |
| !! | TATCTTCTTCAAAATGGTTT+TGG | + | chr4_1:86243133-86243152 | Msa0580940:CDS | 25.0% |
| ! | ATCTGCTGAATTGATATATA+AGG | + | chr4_1:86243614-86243633 | Msa0580940:three_prime_UTR | 25.0% |
| !!! | TTTTGAGATGATTTTCCATT+TGG | + | chr4_1:86243775-86243794 | Msa0580940:three_prime_UTR | 25.0% |
| TTGATCTGAATAGAAGTGAA+TGG | + | chr4_1:86241597-86241616 | Msa0580940:exon | 30.0% | |
| TGATCTGAATAGAAGTGAAT+GGG | + | chr4_1:86241598-86241617 | Msa0580940:exon | 30.0% | |
| AAATGAGAATAATGAGAGAG+AGG | - | chr4_1:86241727-86241746 | None:intergenic | 30.0% | |
| TTGTGAGATTATGATAAGTG+AGG | - | chr4_1:86241818-86241837 | None:intergenic | 30.0% | |
| ATTTAAGCGATGACTATGAT+GGG | - | chr4_1:86242106-86242125 | None:intergenic | 30.0% | |
| AATTTCATTGACAGAACAGA+AGG | - | chr4_1:86242143-86242162 | None:intergenic | 30.0% | |
| !!! | AAATTTCTGTTTTGAGGGAT+AGG | + | chr4_1:86242158-86242177 | Msa0580940:intron | 30.0% |
| CTGATACAACAAAGTAACTA+GGG | + | chr4_1:86242305-86242324 | Msa0580940:intron | 30.0% | |
| GTAAGTAGTAAAAACTGGTA+TGG | - | chr4_1:86242383-86242402 | None:intergenic | 30.0% | |
| CGAAATGATGAAAAACAGAA+TGG | - | chr4_1:86242425-86242444 | None:intergenic | 30.0% | |
| AAGCAAGTTCTTAGGAATTA+AGG | - | chr4_1:86242519-86242538 | None:intergenic | 30.0% | |
| !! | TCTCTTTACTGTTTTGAGTA+TGG | + | chr4_1:86243016-86243035 | Msa0580940:CDS | 30.0% |
| GCAATGTATCTTCTTCAAAA+TGG | + | chr4_1:86243127-86243146 | Msa0580940:CDS | 30.0% | |
| ATTCAGCAGATGTAAAATGA+AGG | - | chr4_1:86243605-86243624 | None:intergenic | 30.0% | |
| AAGTTACTCATGTTGTACAT+GGG | + | chr4_1:86243692-86243711 | Msa0580940:three_prime_UTR | 30.0% | |
| ATTACTTCTAAGCTACCAAA+TGG | - | chr4_1:86243793-86243812 | None:intergenic | 30.0% | |
| ! | GTTTTCTCCTATTCTCATCA+CGG | + | chr4_1:86241688-86241707 | Msa0580940:CDS | 35.0% |
| ATGATGACAGACAAATGTTG+GGG | - | chr4_1:86242055-86242074 | None:intergenic | 35.0% | |
| GATGATGACAGACAAATGTT+GGG | - | chr4_1:86242056-86242075 | None:intergenic | 35.0% | |
| ! | TGATGATGACAGACAAATGT+TGG | - | chr4_1:86242057-86242076 | None:intergenic | 35.0% |
| CATTTGTCTGTCATCATCAT+TGG | + | chr4_1:86242058-86242077 | Msa0580940:intron | 35.0% | |
| CATTTAAGCGATGACTATGA+TGG | - | chr4_1:86242107-86242126 | None:intergenic | 35.0% | |
| GCTGATACAACAAAGTAACT+AGG | + | chr4_1:86242304-86242323 | Msa0580940:intron | 35.0% | |
| GTTCTTAGGAATTAAGGCTA+AGG | - | chr4_1:86242513-86242532 | None:intergenic | 35.0% | |
| GAAAGTAGAAGCAAGTTCTT+AGG | - | chr4_1:86242527-86242546 | None:intergenic | 35.0% | |
| ! | TGTTCTGTGTGCTTTTGTTA+TGG | + | chr4_1:86242601-86242620 | Msa0580940:intron | 35.0% |
| !! | CATATCAAGTTGAAGAAGTG+AGG | - | chr4_1:86242701-86242720 | None:intergenic | 35.0% |
| CTCACTTCTTCAACTTGATA+TGG | + | chr4_1:86242699-86242718 | Msa0580940:intron | 35.0% | |
| GTATCAGGTTCAATTGAACT+AGG | - | chr4_1:86242795-86242814 | None:intergenic | 35.0% | |
| GAAAGAACTACTCCACTATT+CGG | - | chr4_1:86242968-86242987 | None:intergenic | 35.0% | |
| ! | GTTTTTCTTACCAGGATAAG+AGG | + | chr4_1:86243052-86243071 | Msa0580940:CDS | 35.0% |
| !! | TGTTTTTCAGAACAACTGTG+AGG | + | chr4_1:86243165-86243184 | Msa0580940:CDS | 35.0% |
| TTTGCAATGTACTGCAAAAC+TGG | + | chr4_1:86243190-86243209 | Msa0580940:CDS | 35.0% | |
| !! | CTTTTGATTGTAGACAAGCA+AGG | + | chr4_1:86243214-86243233 | Msa0580940:CDS | 35.0% |
| AGTAGATATGCAACTGACAT+TGG | + | chr4_1:86243367-86243386 | Msa0580940:CDS | 35.0% | |
| CAAGTTACTCATGTTGTACA+TGG | + | chr4_1:86243691-86243710 | Msa0580940:three_prime_UTR | 35.0% | |
| TGCAGATGAGAACACTATAT+TGG | + | chr4_1:86243851-86243870 | Msa0580940:three_prime_UTR | 35.0% | |
| CAGTAACACAGACAGACAAA+CGG | + | chr4_1:86241491-86241510 | Msa0580940:five_prime_UTR | 40.0% | |
| ATAGGAGAAAACAGCTCTGT+AGG | - | chr4_1:86241680-86241699 | None:intergenic | 40.0% | |
| TGATGACAGACAAATGTTGG+GGG | - | chr4_1:86242054-86242073 | None:intergenic | 40.0% | |
| TCATTGGAAAACAACTGCAC+TGG | + | chr4_1:86242074-86242093 | Msa0580940:intron | 40.0% | |
| !!! | TCTGTTTTGAGGGATAGGAT+AGG | + | chr4_1:86242163-86242182 | Msa0580940:intron | 40.0% |
| GGATAGGATAGGATAGTACA+AGG | + | chr4_1:86242174-86242193 | Msa0580940:intron | 40.0% | |
| TTTCTACTCCTTACGACTGT+AGG | + | chr4_1:86242543-86242562 | Msa0580940:intron | 40.0% | |
| TCAATCTTCCTACAGTCGTA+AGG | - | chr4_1:86242554-86242573 | None:intergenic | 40.0% | |
| CAAAAATGCCTGCATAGCAT+TGG | - | chr4_1:86242817-86242836 | None:intergenic | 40.0% | |
| ! | TGCTATGCAGGCATTTTTGT+TGG | + | chr4_1:86242818-86242837 | Msa0580940:intron | 40.0% |
| ! | GCTATGCAGGCATTTTTGTT+GGG | + | chr4_1:86242819-86242838 | Msa0580940:intron | 40.0% |
| ! | CTATGCAGGCATTTTTGTTG+GGG | + | chr4_1:86242820-86242839 | Msa0580940:intron | 40.0% |
| ! | TATGCAGGCATTTTTGTTGG+GGG | + | chr4_1:86242821-86242840 | Msa0580940:intron | 40.0% |
| TTAGACTGCTTCCTTCGAAA+CGG | + | chr4_1:86242992-86243011 | Msa0580940:CDS | 40.0% | |
| AGTAAAGAGAACCGTTTCGA+AGG | - | chr4_1:86243006-86243025 | None:intergenic | 40.0% | |
| ATCCTGGTAAGAAAAACTGC+TGG | - | chr4_1:86243049-86243068 | None:intergenic | 40.0% | |
| TTTCTTACCAGGATAAGAGG+TGG | + | chr4_1:86243055-86243074 | Msa0580940:CDS | 40.0% | |
| ! | GATGGATAACAGTTTCAGGT+GGG | - | chr4_1:86243105-86243124 | None:intergenic | 40.0% |
| GAAGAAGATACATTGCTCGA+TGG | - | chr4_1:86243123-86243142 | None:intergenic | 40.0% | |
| ATTGTAGACAAGCAAGGAGT+TGG | + | chr4_1:86243220-86243239 | Msa0580940:CDS | 40.0% | |
| GGTCAAGCTTCTTCTGTTAT+TGG | + | chr4_1:86243250-86243269 | Msa0580940:CDS | 40.0% | |
| !! | GAAGAAAGCATTGCAGCTAA+TGG | - | chr4_1:86243280-86243299 | None:intergenic | 40.0% |
| CATTGGCATTAGAAGTGATG+TGG | + | chr4_1:86243384-86243403 | Msa0580940:CDS | 40.0% | |
| CATTAGAAGTGATGTGGTCA+AGG | + | chr4_1:86243390-86243409 | Msa0580940:CDS | 40.0% | |
| ! | CAGAAGTTTTCATGTGCACA+AGG | - | chr4_1:86243534-86243553 | None:intergenic | 40.0% |
| GTTCGGTTACAATTGAAGGT+AGG | - | chr4_1:86243821-86243840 | None:intergenic | 40.0% | |
| !! | AGTGGTTCGGTTACAATTGA+AGG | - | chr4_1:86243825-86243844 | None:intergenic | 40.0% |
| TAACACAGACAGACAAACGG+TGG | + | chr4_1:86241494-86241513 | Msa0580940:five_prime_UTR | 45.0% | |
| AACACAGACAGACAAACGGT+GGG | + | chr4_1:86241495-86241514 | Msa0580940:five_prime_UTR | 45.0% | |
| TAGGTGTAGACATGATCACC+GGG | - | chr4_1:86241661-86241680 | None:intergenic | 45.0% | |
| GTAGGTGTAGACATGATCAC+CGG | - | chr4_1:86241662-86241681 | None:intergenic | 45.0% | |
| AGCTTGACCGTGATGAGAAT+AGG | - | chr4_1:86241698-86241717 | None:intergenic | 45.0% | |
| ACCTGATACCAATGCTATGC+AGG | + | chr4_1:86242806-86242825 | Msa0580940:intron | 45.0% | |
| ! | ATGCAGGCATTTTTGTTGGG+GGG | + | chr4_1:86242822-86242841 | Msa0580940:intron | 45.0% |
| AATCAGGAAAGGTGGGACAA+GGG | - | chr4_1:86242931-86242950 | None:intergenic | 45.0% | |
| AACCCACAATCAGGAAAGGT+GGG | - | chr4_1:86242938-86242957 | None:intergenic | 45.0% | |
| ! | CACCAGCAGTTTTTCTTACC+AGG | + | chr4_1:86243044-86243063 | Msa0580940:CDS | 45.0% |
| ! | ATAACAGTTTCAGGTGGGTC+GGG | - | chr4_1:86243100-86243119 | None:intergenic | 45.0% |
| ! | GATAACAGTTTCAGGTGGGT+CGG | - | chr4_1:86243101-86243120 | None:intergenic | 45.0% |
| CGATGGATAACAGTTTCAGG+TGG | - | chr4_1:86243106-86243125 | None:intergenic | 45.0% | |
| GCTCGATGGATAACAGTTTC+AGG | - | chr4_1:86243109-86243128 | None:intergenic | 45.0% | |
| AAGCAAGGAGTTGGAAGAAG+TGG | + | chr4_1:86243229-86243248 | Msa0580940:CDS | 45.0% | |
| CTCGGCATTAACAACTTGAG+AGG | - | chr4_1:86243304-86243323 | None:intergenic | 45.0% | |
| TTGTTAATGCCGAGTCCTGT+TGG | + | chr4_1:86243310-86243329 | Msa0580940:CDS | 45.0% | |
| AGAAGTGATGTGGTCAAGGT+TGG | + | chr4_1:86243394-86243413 | Msa0580940:CDS | 45.0% | |
| GAAGTGATGTGGTCAAGGTT+GGG | + | chr4_1:86243395-86243414 | Msa0580940:CDS | 45.0% | |
| AAGTGATGTGGTCAAGGTTG+GGG | + | chr4_1:86243396-86243415 | Msa0580940:CDS | 45.0% | |
| AGAAGACTTGGCTGTGAACT+TGG | + | chr4_1:86243420-86243439 | Msa0580940:CDS | 45.0% | |
| GAAGACTTGGCTGTGAACTT+GGG | + | chr4_1:86243421-86243440 | Msa0580940:CDS | 45.0% | |
| ATCTGCACAGCAAAGTGGTT+CGG | - | chr4_1:86243838-86243857 | None:intergenic | 45.0% | |
| TTCTCATCTGCACAGCAAAG+TGG | - | chr4_1:86243843-86243862 | None:intergenic | 45.0% | |
| !! | GTGGAGTGGACTAAGGTAAG+AGG | + | chr4_1:86241527-86241546 | Msa0580940:five_prime_UTR | 50.0% |
| GAGAGACACGACATCAAACC+CGG | + | chr4_1:86241640-86241659 | Msa0580940:CDS | 50.0% | |
| ! | GTCTTGCGTCGGTCAGAATA+AGG | - | chr4_1:86242032-86242051 | None:intergenic | 50.0% |
| AAATGTTGGGGGTCTTGCGT+CGG | - | chr4_1:86242043-86242062 | None:intergenic | 50.0% | |
| GGAAAACAACTGCACTGGAC+TGG | + | chr4_1:86242079-86242098 | Msa0580940:intron | 50.0% | |
| !! | GCCTGCATAGCATTGGTATC+AGG | - | chr4_1:86242810-86242829 | None:intergenic | 50.0% |
| ! | CATTTTTGTTGGGGGGAGCA+AGG | + | chr4_1:86242829-86242848 | Msa0580940:CDS | 50.0% |
| ATCAGGAAAGGTGGGACAAG+GGG | - | chr4_1:86242930-86242949 | None:intergenic | 50.0% | |
| CAATCAGGAAAGGTGGGACA+AGG | - | chr4_1:86242932-86242951 | None:intergenic | 50.0% | |
| TGTCCCACCTTTCCTGATTG+TGG | + | chr4_1:86242932-86242951 | Msa0580940:CDS | 50.0% | |
| GTCCCACCTTTCCTGATTGT+GGG | + | chr4_1:86242933-86242952 | Msa0580940:CDS | 50.0% | |
| GAACCCACAATCAGGAAAGG+TGG | - | chr4_1:86242939-86242958 | None:intergenic | 50.0% | |
| CCTGAACCCACAATCAGGAA+AGG | - | chr4_1:86242942-86242961 | None:intergenic | 50.0% | |
| CCTTTCCTGATTGTGGGTTC+AGG | + | chr4_1:86242939-86242958 | Msa0580940:CDS | 50.0% | |
| AATGCCGAGTCCTGTTGGTA+TGG | + | chr4_1:86243315-86243334 | Msa0580940:CDS | 50.0% | |
| GTAGCCATACCAACAGGACT+CGG | - | chr4_1:86243322-86243341 | None:intergenic | 50.0% | |
| GAGTCCTGTTGGTATGGCTA+CGG | + | chr4_1:86243321-86243340 | Msa0580940:CDS | 50.0% | |
| GTTACCGTAGCCATACCAAC+AGG | - | chr4_1:86243328-86243347 | None:intergenic | 50.0% | |
| CAAGGTTGGGGTAGAAGACT+TGG | + | chr4_1:86243408-86243427 | Msa0580940:CDS | 50.0% | |
| ACTTGGCTGTGAACTTGGGA+TGG | + | chr4_1:86243425-86243444 | Msa0580940:CDS | 50.0% | |
| ! | ATGGACTTGTTCCGATGAGG+AGG | + | chr4_1:86243444-86243463 | Msa0580940:CDS | 50.0% |
| TCCAACTACCTCCTCCTCAT+CGG | - | chr4_1:86243458-86243477 | None:intergenic | 50.0% | |
| ACAGACAGACAAACGGTGGG+TGG | + | chr4_1:86241498-86241517 | Msa0580940:five_prime_UTR | 55.0% | |
| CAGACAGACAAACGGTGGGT+GGG | + | chr4_1:86241499-86241518 | Msa0580940:five_prime_UTR | 55.0% | |
| AGACAGACAAACGGTGGGTG+GGG | + | chr4_1:86241500-86241519 | Msa0580940:five_prime_UTR | 55.0% | |
| GGAGTGTGTGTGTGTCTGTC+TGG | + | chr4_1:86241548-86241567 | Msa0580940:five_prime_UTR | 55.0% | |
| GGTTGCCTGAACCCACAATC+AGG | - | chr4_1:86242947-86242966 | None:intergenic | 55.0% | |
| GGGTTCAGGCAACCGAATAG+TGG | + | chr4_1:86242953-86242972 | Msa0580940:CDS | 55.0% | |
| GGTATGGCTACGGTAACAGC+AGG | + | chr4_1:86243331-86243350 | Msa0580940:CDS | 55.0% | |
| ! | GGGATGGACTTGTTCCGATG+AGG | + | chr4_1:86243441-86243460 | Msa0580940:CDS | 55.0% |
| ! | GACTTGTTCCGATGAGGAGG+AGG | + | chr4_1:86243447-86243466 | Msa0580940:CDS | 55.0% |
| TCCGATGAGGAGGAGGTAGT+TGG | + | chr4_1:86243454-86243473 | Msa0580940:CDS | 55.0% | |
| GAGGAGGAGGTAGTTGGAGA+TGG | + | chr4_1:86243460-86243479 | Msa0580940:CDS | 55.0% | |
| !! | GGGTGGAGTGGAGTGGACTA+AGG | + | chr4_1:86241520-86241539 | Msa0580940:five_prime_UTR | 60.0% |
| !! | GTGGGACAAGGGGTTGGTGT+TGG | - | chr4_1:86242920-86242939 | None:intergenic | 60.0% |
| GGAAAGGTGGGACAAGGGGT+TGG | - | chr4_1:86242926-86242945 | None:intergenic | 60.0% | |
| GCACGTGCCACCTCTTATCC+TGG | - | chr4_1:86243065-86243084 | None:intergenic | 60.0% | |
| CAGACAAACGGTGGGTGGGG+TGG | + | chr4_1:86241503-86241522 | Msa0580940:five_prime_UTR | 65.0% | |
| AAACGGTGGGTGGGGTGGAG+TGG | + | chr4_1:86241508-86241527 | Msa0580940:five_prime_UTR | 65.0% | |
| GTGGGTGGGGTGGAGTGGAG+TGG | + | chr4_1:86241513-86241532 | Msa0580940:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86241444 | 86243900 | 86241444 | ID=Msa0580940;Name=Msa0580940 |
| chr4_1 | mRNA | 86241444 | 86243900 | 86241444 | ID=Msa0580940-mRNA-1;Parent=Msa0580940;Name=Msa0580940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=172|1|1|1|1|1|2|390|258 |
| chr4_1 | exon | 86241444 | 86241709 | 86241444 | ID=Msa0580940-mRNA-1:exon:31824;Parent=Msa0580940-mRNA-1 |
| chr4_1 | exon | 86242828 | 86243900 | 86242828 | ID=Msa0580940-mRNA-1:exon:31825;Parent=Msa0580940-mRNA-1 |
| chr4_1 | five_prime_UTR | 86241444 | 86241615 | 86241444 | ID=Msa0580940-mRNA-1:five_prime_utr;Parent=Msa0580940-mRNA-1 |
| chr4_1 | CDS | 86241616 | 86241709 | 86241616 | ID=Msa0580940-mRNA-1:cds;Parent=Msa0580940-mRNA-1 |
| chr4_1 | CDS | 86242828 | 86243510 | 86242828 | ID=Msa0580940-mRNA-1:cds;Parent=Msa0580940-mRNA-1 |
| chr4_1 | three_prime_UTR | 86243511 | 86243900 | 86243511 | ID=Msa0580940-mRNA-1:three_prime_utr;Parent=Msa0580940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
