Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408160 | XP_013450668.1 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408160 | sp|Q93V51|PSE1_ARATH | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.35e-85 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408160 | I3SHV8 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014770 | Msa1408160 | 0.811523 | 6.710668e-51 | -8.615850e-47 |
| Msa0063190 | Msa1408160 | 0.831783 | 1.372772e-55 | -8.615850e-47 |
| Msa0108630 | Msa1408160 | 0.836390 | 9.623908e-57 | -8.615850e-47 |
| Msa1363010 | Msa1408160 | 0.805778 | 1.132699e-49 | -8.615850e-47 |
| Msa1368170 | Msa1408160 | 0.840225 | 9.882495e-58 | -8.615850e-47 |
| Msa1369010 | Msa1408160 | 0.801805 | 7.571436e-49 | -8.615850e-47 |
| Msa1385570 | Msa1408160 | 0.826056 | 3.343739e-54 | -8.615850e-47 |
| Msa1389820 | Msa1408160 | 0.807179 | 5.736073e-50 | -8.615850e-47 |
| Msa1393850 | Msa1408160 | 0.803391 | 3.564672e-49 | -8.615850e-47 |
| Msa1408160 | Msa1410160 | 0.807923 | 3.986615e-50 | -8.615850e-47 |
| Msa1408160 | Msa1419900 | 0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa1408160 | Msa1420830 | 0.823517 | 1.327176e-53 | -8.615850e-47 |
| Msa1408160 | Msa1448960 | 0.993937 | 2.483234e-203 | -8.615850e-47 |
| Msa0625340 | Msa1408160 | 0.810439 | 1.152001e-50 | -8.615850e-47 |
| Msa0660260 | Msa1408160 | 0.806876 | 6.647684e-50 | -8.615850e-47 |
| Msa0687090 | Msa1408160 | 0.818091 | 2.348503e-52 | -8.615850e-47 |
| Msa0752230 | Msa1408160 | 0.804308 | 2.299073e-49 | -8.615850e-47 |
| Msa0774060 | Msa1408160 | 0.816966 | 4.210958e-52 | -8.615850e-47 |
| Msa0827420 | Msa1408160 | 0.802143 | 6.452248e-49 | -8.615850e-47 |
| Msa0172590 | Msa1408160 | 0.805012 | 1.639584e-49 | -8.615850e-47 |
| Msa0195440 | Msa1408160 | 0.828219 | 1.015421e-54 | -8.615850e-47 |
| Msa0237240 | Msa1408160 | 0.830740 | 2.477421e-55 | -8.615850e-47 |
| Msa1236150 | Msa1408160 | 0.819505 | 1.121419e-52 | -8.615850e-47 |
| Msa1299980 | Msa1408160 | 0.838432 | 2.886263e-57 | -8.615850e-47 |
| Msa1301980 | Msa1408160 | 0.850080 | 2.140205e-60 | -8.615850e-47 |
| Msa1302000 | Msa1408160 | 0.811913 | 5.519621e-51 | -8.615850e-47 |
| Msa1308860 | Msa1408160 | 0.814760 | 1.307367e-51 | -8.615850e-47 |
| Msa1331650 | Msa1408160 | 0.865856 | 4.357254e-65 | -8.615850e-47 |
| Msa1333500 | Msa1408160 | 0.859314 | 4.507469e-63 | -8.615850e-47 |
| Msa1342810 | Msa1408160 | 0.816841 | 4.492606e-52 | -8.615850e-47 |
| Msa0401060 | Msa1408160 | 0.844685 | 6.487704e-59 | -8.615850e-47 |
| Msa0447870 | Msa1408160 | 0.820542 | 6.491361e-53 | -8.615850e-47 |
| Msa0460640 | Msa1408160 | 0.804828 | 1.791439e-49 | -8.615850e-47 |
| Msa0461560 | Msa1408160 | 0.806496 | 7.998238e-50 | -8.615850e-47 |
| Msa0465610 | Msa1408160 | 0.826055 | 3.346045e-54 | -8.615850e-47 |
| Msa1000970 | Msa1408160 | 0.824212 | 9.119507e-54 | -8.615850e-47 |
| Msa1003740 | Msa1408160 | 0.803830 | 2.891332e-49 | -8.615850e-47 |
| Msa1078080 | Msa1408160 | 0.821082 | 4.878687e-53 | -8.615850e-47 |
| Msa1085680 | Msa1408160 | 0.808972 | 2.381595e-50 | -8.615850e-47 |
| Msa0257300 | Msa1408160 | 0.821529 | 3.847537e-53 | -8.615850e-47 |
| Msa0296600 | Msa1408160 | 0.847882 | 8.731089e-60 | -8.615850e-47 |
| Msa0331110 | Msa1408160 | 0.811877 | 5.618307e-51 | -8.615850e-47 |
| Msa0334990 | Msa1408160 | 0.830788 | 2.410637e-55 | -8.615850e-47 |
| Msa0356640 | Msa1408160 | 0.806797 | 6.909274e-50 | -8.615850e-47 |
| Msa1138800 | Msa1408160 | 0.810028 | 1.412760e-50 | -8.615850e-47 |
| Msa1166290 | Msa1408160 | 0.803295 | 3.732433e-49 | -8.615850e-47 |
| Msa1212700 | Msa1408160 | 0.874879 | 4.780983e-68 | -8.615850e-47 |
| Msa1212920 | Msa1408160 | 0.875854 | 2.218572e-68 | -8.615850e-47 |
| Msa1216090 | Msa1408160 | 0.839250 | 1.772678e-57 | -8.615850e-47 |
| Msa1216340 | Msa1408160 | 0.848238 | 6.961630e-60 | -8.615850e-47 |
| Msa0483910 | Msa1408160 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0495620 | Msa1408160 | 0.811595 | 6.470766e-51 | -8.615850e-47 |
| Msa0521510 | Msa1408160 | 0.804095 | 2.546217e-49 | -8.615850e-47 |
| Msa0537990 | Msa1408160 | 0.814160 | 1.774907e-51 | -8.615850e-47 |
| Msa0552570 | Msa1408160 | 0.807194 | 5.695191e-50 | -8.615850e-47 |
| Msa0561560 | Msa1408160 | 0.802362 | 5.816365e-49 | -8.615850e-47 |
| Msa0563940 | Msa1408160 | 0.808540 | 2.945192e-50 | -8.615850e-47 |
| Msa0571350 | Msa1408160 | 0.838252 | 3.211916e-57 | -8.615850e-47 |
| Msa0572830 | Msa1408160 | 0.803324 | 3.681548e-49 | -8.615850e-47 |
| Msa0574660 | Msa1408160 | 0.801975 | 6.984930e-49 | -8.615850e-47 |
| Msa0576330 | Msa1408160 | 0.810234 | 1.275689e-50 | -8.615850e-47 |
| Msa0580940 | Msa1408160 | 0.995164 | 1.300686e-213 | -8.615850e-47 |
| Msa0901150 | Msa1408160 | 0.843384 | 1.448379e-58 | -8.615850e-47 |
| Msa0926080 | Msa1408160 | 0.826470 | 2.665393e-54 | -8.615850e-47 |
| Msa0966710 | Msa1408160 | 0.827933 | 1.189465e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408160 | MtrunA17_Chr7g0275931 | 98.069 | 259 | 4 | 1 | 1 | 258 | 1 | 259 | 0.0 | 526 |
| Msa1408160 | MtrunA17_Chr1g0177711 | 52.917 | 240 | 109 | 2 | 1 | 237 | 1 | 239 | 4.90e-89 | 265 |
| Msa1408160 | MtrunA17_Chr5g0433261 | 51.464 | 239 | 105 | 3 | 1 | 232 | 1 | 235 | 1.40e-76 | 232 |
| Msa1408160 | MtrunA17_Chr3g0109371 | 44.351 | 239 | 110 | 5 | 1 | 226 | 17 | 245 | 4.18e-62 | 196 |
| Msa1408160 | MtrunA17_Chr3g0109361 | 36.576 | 257 | 113 | 5 | 8 | 222 | 2 | 250 | 5.01e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1408160 | AT1G01225.1 | 75.424 | 236 | 57 | 1 | 1 | 236 | 1 | 235 | 2.76e-135 | 382 |
| Msa1408160 | AT4G00905.1 | 71.255 | 247 | 62 | 1 | 1 | 238 | 1 | 247 | 3.02e-130 | 369 |
| Msa1408160 | AT5G06370.1 | 53.527 | 241 | 104 | 3 | 1 | 236 | 1 | 238 | 6.45e-86 | 256 |
| Msa1408160 | AT3G02700.1 | 51.653 | 242 | 105 | 5 | 1 | 236 | 1 | 236 | 1.46e-75 | 230 |
| Msa1408160 | AT5G16360.1 | 41.912 | 272 | 122 | 6 | 1 | 237 | 1 | 271 | 4.37e-63 | 199 |
| Msa1408160 | AT5G16330.1 | 43.750 | 240 | 107 | 5 | 1 | 232 | 9 | 228 | 9.47e-58 | 184 |
Find 87 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATGTATCTTCTTCAAAA+TGG | 0.253229 | tig0023376:-22695 | Msa1408160:CDS |
| GGTCAAGCTTCTTCTGTTAT+TGG | 0.264756 | tig0023376:-22572 | Msa1408160:CDS |
| TATCTTCTTCAAAATGGTTT+TGG | 0.282564 | tig0023376:-22689 | Msa1408160:CDS |
| GCTCGATGGATAACAGTTTC+AGG | 0.291481 | tig0023376:+22716 | None:intergenic |
| CCTTTCCTGATTGTGGGTTC+AGG | 0.306141 | tig0023376:-22883 | Msa1408160:CDS |
| ATCTGCTGAATTGATATATA+AGG | 0.319784 | tig0023376:-22208 | Msa1408160:three_prime_UTR |
| ATTGACTTAAAGTTTCTATC+AGG | 0.325786 | tig0023376:+22956 | None:intergenic |
| GTCCCACCTTTCCTGATTGT+GGG | 0.332185 | tig0023376:-22889 | Msa1408160:CDS |
| TTTGCAATGTACTGCAAAAC+TGG | 0.342481 | tig0023376:-22632 | Msa1408160:CDS |
| TGTCCCACCTTTCCTGATTG+TGG | 0.372248 | tig0023376:-22890 | Msa1408160:CDS |
| AGAAGACTTGGCTGTGAACT+TGG | 0.382220 | tig0023376:-22402 | Msa1408160:CDS |
| GAAGAAAGCATTGCAGCTAA+TGG | 0.389297 | tig0023376:+22545 | None:intergenic |
| GTGGGTGGGGTGGAGTGGAG+TGG | 0.398042 | tig0023376:-24309 | Msa1408160:five_prime_UTR |
| GAAGTGATGTGGTCAAGGTT+GGG | 0.403253 | tig0023376:-22427 | Msa1408160:CDS |
| TGCAGATGAGAACACTATAT+TGG | 0.412285 | tig0023376:-21971 | Msa1408160:three_prime_UTR |
| TAGCTAAATCATATGATAAT+CGG | 0.420349 | tig0023376:+22326 | None:intergenic |
| GTGGAGTGGACTAAGGTAAG+AGG | 0.430880 | tig0023376:-24295 | Msa1408160:five_prime_UTR |
| TTATTGGATTCCATTTCAAT+TGG | 0.435157 | tig0023376:+24374 | None:intergenic |
| AAACGGTGGGTGGGGTGGAG+TGG | 0.436800 | tig0023376:-24314 | Msa1408160:five_prime_UTR |
| AGTGGTTCGGTTACAATTGA+AGG | 0.452856 | tig0023376:+22000 | None:intergenic |
| ATTGTAGACAAGCAAGGAGT+TGG | 0.458301 | tig0023376:-22602 | Msa1408160:CDS |
| GGGTGGAGTGGAGTGGACTA+AGG | 0.468265 | tig0023376:-24302 | Msa1408160:five_prime_UTR |
| CAAGTTACTCATGTTGTACA+TGG | 0.470133 | tig0023376:-22131 | Msa1408160:three_prime_UTR |
| AAGTGATGTGGTCAAGGTTG+GGG | 0.470724 | tig0023376:-22426 | Msa1408160:CDS |
| GGTTGCCTGAACCCACAATC+AGG | 0.472264 | tig0023376:+22878 | None:intergenic |
| TTGATCTGAATAGAAGTGAA+TGG | 0.473662 | tig0023376:-24225 | Msa1408160:exon |
| TCCGATGAGGAGGAGGTAGT+TGG | 0.476309 | tig0023376:-22368 | Msa1408160:CDS |
| AGACAGACAAACGGTGGGTG+GGG | 0.476537 | tig0023376:-24322 | Msa1408160:five_prime_UTR |
| GAAAGAACTACTCCACTATT+CGG | 0.477232 | tig0023376:+22857 | None:intergenic |
| TGATCTGAATAGAAGTGAAT+GGG | 0.478948 | tig0023376:-24224 | Msa1408160:exon |
| AGAAGTGATGTGGTCAAGGT+TGG | 0.486475 | tig0023376:-22428 | Msa1408160:CDS |
| CAATCAGGAAAGGTGGGACA+AGG | 0.488425 | tig0023376:+22893 | None:intergenic |
| GTGGGACAAGGGGTTGGTGT+TGG | 0.491703 | tig0023376:+22905 | None:intergenic |
| TGGGTGGGGACCAATTGAAA+TGG | 0.492897 | tig0023376:-24384 | None:intergenic |
| CAAGGTTGGGGTAGAAGACT+TGG | 0.494212 | tig0023376:-22414 | Msa1408160:CDS |
| ATCTGCACAGCAAAGTGGTT+CGG | 0.499108 | tig0023376:+21987 | None:intergenic |
| GGGTTCAGGCAACCGAATAG+TGG | 0.509445 | tig0023376:-22869 | Msa1408160:CDS |
| ATAACAGTTTCAGGTGGGTC+GGG | 0.514072 | tig0023376:+22725 | None:intergenic |
| TTAGACTGCTTCCTTCGAAA+CGG | 0.516654 | tig0023376:-22830 | Msa1408160:CDS |
| AAGCAAGGAGTTGGAAGAAG+TGG | 0.518050 | tig0023376:-22593 | Msa1408160:CDS |
| ATTACTTCTAAGCTACCAAA+TGG | 0.521090 | tig0023376:+22032 | None:intergenic |
| GCACGTGCCACCTCTTATCC+TGG | 0.523495 | tig0023376:+22760 | None:intergenic |
| AGCTTGACCGTGATGAGAAT+AGG | 0.526450 | tig0023376:+24127 | None:intergenic |
| ATAGGAGAAAACAGCTCTGT+AGG | 0.528737 | tig0023376:+24145 | None:intergenic |
| GGAAAGGTGGGACAAGGGGT+TGG | 0.535853 | tig0023376:+22899 | None:intergenic |
| GACTTGTTCCGATGAGGAGG+AGG | 0.537304 | tig0023376:-22375 | Msa1408160:CDS |
| GAGGAGGAGGTAGTTGGAGA+TGG | 0.545453 | tig0023376:-22362 | Msa1408160:CDS |
| GTTACCGTAGCCATACCAAC+AGG | 0.545756 | tig0023376:+22497 | None:intergenic |
| TTGTTAATGCCGAGTCCTGT+TGG | 0.549441 | tig0023376:-22512 | Msa1408160:CDS |
| GATAACAGTTTCAGGTGGGT+CGG | 0.549630 | tig0023376:+22724 | None:intergenic |
| CAGACAAACGGTGGGTGGGG+TGG | 0.550312 | tig0023376:-24319 | Msa1408160:five_prime_UTR |
| ATTCAGCAGATGTAAAATGA+AGG | 0.550749 | tig0023376:+22220 | None:intergenic |
| AGTAGATATGCAACTGACAT+TGG | 0.566026 | tig0023376:-22455 | Msa1408160:CDS |
| GTAGGTGTAGACATGATCAC+CGG | 0.568352 | tig0023376:+24163 | None:intergenic |
| ACTTGGCTGTGAACTTGGGA+TGG | 0.569461 | tig0023376:-22397 | Msa1408160:CDS |
| GTTCGGTTACAATTGAAGGT+AGG | 0.569462 | tig0023376:+22004 | None:intergenic |
| GAGAGACACGACATCAAACC+CGG | 0.570178 | tig0023376:-24182 | Msa1408160:CDS |
| AATCCAATAATATTGAAAAG+TGG | 0.577825 | tig0023376:-24361 | Msa1408160:five_prime_UTR |
| CAGACAGACAAACGGTGGGT+GGG | 0.578813 | tig0023376:-24323 | Msa1408160:five_prime_UTR |
| AATGCCGAGTCCTGTTGGTA+TGG | 0.579949 | tig0023376:-22507 | Msa1408160:CDS |
| ATCAGGAAAGGTGGGACAAG+GGG | 0.583759 | tig0023376:+22895 | None:intergenic |
| AGTAAAGAGAACCGTTTCGA+AGG | 0.585696 | tig0023376:+22819 | None:intergenic |
| TCCAACTACCTCCTCCTCAT+CGG | 0.586315 | tig0023376:+22367 | None:intergenic |
| CATTAGAAGTGATGTGGTCA+AGG | 0.589386 | tig0023376:-22432 | Msa1408160:CDS |
| ATGGACTTGTTCCGATGAGG+AGG | 0.591554 | tig0023376:-22378 | Msa1408160:CDS |
| ACAGACAGACAAACGGTGGG+TGG | 0.592132 | tig0023376:-24324 | Msa1408160:five_prime_UTR |
| AATCAGGAAAGGTGGGACAA+GGG | 0.592653 | tig0023376:+22894 | None:intergenic |
| GAGTCCTGTTGGTATGGCTA+CGG | 0.594150 | tig0023376:-22501 | Msa1408160:CDS |
| CGATGGATAACAGTTTCAGG+TGG | 0.599166 | tig0023376:+22719 | None:intergenic |
| GAAGACTTGGCTGTGAACTT+GGG | 0.599819 | tig0023376:-22401 | Msa1408160:CDS |
| GAACCCACAATCAGGAAAGG+TGG | 0.600274 | tig0023376:+22886 | None:intergenic |
| GGTATGGCTACGGTAACAGC+AGG | 0.600551 | tig0023376:-22491 | Msa1408160:CDS |
| AACCCACAATCAGGAAAGGT+GGG | 0.602727 | tig0023376:+22887 | None:intergenic |
| GAAGAAGATACATTGCTCGA+TGG | 0.604177 | tig0023376:+22702 | None:intergenic |
| CAGTAACACAGACAGACAAA+CGG | 0.610216 | tig0023376:-24331 | Msa1408160:five_prime_UTR |
| TTCTCATCTGCACAGCAAAG+TGG | 0.618458 | tig0023376:+21982 | None:intergenic |
| CTCGGCATTAACAACTTGAG+AGG | 0.635148 | tig0023376:+22521 | None:intergenic |
| CCTGAACCCACAATCAGGAA+AGG | 0.637605 | tig0023376:+22883 | None:intergenic |
| TTTCTTACCAGGATAAGAGG+TGG | 0.640216 | tig0023376:-22767 | Msa1408160:CDS |
| GGGATGGACTTGTTCCGATG+AGG | 0.647617 | tig0023376:-22381 | Msa1408160:CDS |
| TAACACAGACAGACAAACGG+TGG | 0.673793 | tig0023376:-24328 | Msa1408160:five_prime_UTR |
| GATGGATAACAGTTTCAGGT+GGG | 0.675658 | tig0023376:+22720 | None:intergenic |
| GTAGCCATACCAACAGGACT+CGG | 0.681475 | tig0023376:+22503 | None:intergenic |
| AACACAGACAGACAAACGGT+GGG | 0.681621 | tig0023376:-24327 | Msa1408160:five_prime_UTR |
| TAGGTGTAGACATGATCACC+GGG | 0.692039 | tig0023376:+24164 | None:intergenic |
| CATTGGCATTAGAAGTGATG+TGG | 0.712623 | tig0023376:-22438 | Msa1408160:CDS |
| AAGTTACTCATGTTGTACAT+GGG | 0.721681 | tig0023376:-22130 | Msa1408160:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTATATTCATAATGATTT+TGG | - | tig0023376:23240-23259 | Msa1408160:intron | 15.0% |
| !! | AATCCAATAATATTGAAAAG+TGG | - | tig0023376:21961-21980 | Msa1408160:three_prime_UTR | 20.0% |
| !!! | TTGTTATTCTTTTGTTTTGT+TGG | - | tig0023376:22267-22286 | Msa1408160:three_prime_UTR | 20.0% |
| !!! | TATATTTTCTGCTTATTTCT+CGG | - | tig0023376:22370-22389 | Msa1408160:CDS | 20.0% |
| !!! | AAATTCATTTTTATCACTCT+AGG | - | tig0023376:22828-22847 | Msa1408160:CDS | 20.0% |
| !! | TAGCTAAATCATATGATAAT+CGG | + | tig0023376:23999-24018 | None:intergenic | 20.0% |
| !! | AAAAGAAAAAGAAAAGAGAA+AGG | + | tig0023376:24140-24159 | None:intergenic | 20.0% |
| !!! | GTATCTTTTACAATAATAGT+TGG | - | tig0023376:24165-24184 | Msa1408160:CDS | 20.0% |
| ! | TTATTGGATTCCATTTCAAT+TGG | + | tig0023376:21951-21970 | None:intergenic | 25.0% |
| !!! | TTGCCACTTTTCAATATTAT+TGG | + | tig0023376:21967-21986 | None:intergenic | 25.0% |
| ! | ACAATAACAAAATAGCAGAT+TGG | + | tig0023376:22251-22270 | None:intergenic | 25.0% |
| !! | TTTCAAGCGTTTGATTTAAA+TGG | + | tig0023376:22468-22487 | None:intergenic | 25.0% |
| !! | TCAATGAAATTTCTGTTTTG+AGG | - | tig0023376:22652-22671 | Msa1408160:CDS | 25.0% |
| !!! | CAATGAAATTTCTGTTTTGA+GGG | - | tig0023376:22653-22672 | Msa1408160:CDS | 25.0% |
| !!! | TGGTTGATAACATATTGATT+TGG | + | tig0023376:22863-22882 | None:intergenic | 25.0% |
| ! | ACTAAGTAAGTAGTAAAAAC+TGG | + | tig0023376:22888-22907 | None:intergenic | 25.0% |
| !!! | CATTCTGTTTTTCATCATTT+CGG | - | tig0023376:22923-22942 | Msa1408160:CDS | 25.0% |
| !!! | ATTCTGTTTTTCATCATTTC+GGG | - | tig0023376:22924-22943 | Msa1408160:CDS | 25.0% |
| ! | CAGAATTCTGACTAATTAAT+TGG | + | tig0023376:23130-23149 | None:intergenic | 25.0% |
| !! | ATTGACTTAAAGTTTCTATC+AGG | + | tig0023376:23369-23388 | None:intergenic | 25.0% |
| !! | TATCTTCTTCAAAATGGTTT+TGG | - | tig0023376:23633-23652 | Msa1408160:intron | 25.0% |
| ! | ATCTGCTGAATTGATATATA+AGG | - | tig0023376:24114-24133 | Msa1408160:intron | 25.0% |
| !!! | TTTTGAGATGATTTTCCATT+TGG | - | tig0023376:24275-24294 | Msa1408160:five_prime_UTR | 25.0% |
| TTGATCTGAATAGAAGTGAA+TGG | - | tig0023376:22097-22116 | Msa1408160:three_prime_UTR | 30.0% | |
| TGATCTGAATAGAAGTGAAT+GGG | - | tig0023376:22098-22117 | Msa1408160:three_prime_UTR | 30.0% | |
| AAATGAGAATAATGAGAGAG+AGG | + | tig0023376:22227-22246 | None:intergenic | 30.0% | |
| TTGTGAGATTATGATAAGTG+AGG | + | tig0023376:22318-22337 | None:intergenic | 30.0% | |
| ATTTAAGCGATGACTATGAT+GGG | + | tig0023376:22606-22625 | None:intergenic | 30.0% | |
| AATTTCATTGACAGAACAGA+AGG | + | tig0023376:22643-22662 | None:intergenic | 30.0% | |
| !!! | AAATTTCTGTTTTGAGGGAT+AGG | - | tig0023376:22658-22677 | Msa1408160:CDS | 30.0% |
| CTGATACAACAAAGTAACTA+GGG | - | tig0023376:22805-22824 | Msa1408160:CDS | 30.0% | |
| GTAAGTAGTAAAAACTGGTA+TGG | + | tig0023376:22883-22902 | None:intergenic | 30.0% | |
| CGAAATGATGAAAAACAGAA+TGG | + | tig0023376:22925-22944 | None:intergenic | 30.0% | |
| AAGCAAGTTCTTAGGAATTA+AGG | + | tig0023376:23019-23038 | None:intergenic | 30.0% | |
| !! | TCTCTTTACTGTTTTGAGTA+TGG | - | tig0023376:23516-23535 | Msa1408160:intron | 30.0% |
| GCAATGTATCTTCTTCAAAA+TGG | - | tig0023376:23627-23646 | Msa1408160:intron | 30.0% | |
| ATTCAGCAGATGTAAAATGA+AGG | + | tig0023376:24105-24124 | None:intergenic | 30.0% | |
| AAGTTACTCATGTTGTACAT+GGG | - | tig0023376:24192-24211 | Msa1408160:CDS | 30.0% | |
| ATTACTTCTAAGCTACCAAA+TGG | + | tig0023376:24293-24312 | None:intergenic | 30.0% | |
| ! | GTTTTCTCCTATTCTCATCA+CGG | - | tig0023376:22188-22207 | Msa1408160:three_prime_UTR | 35.0% |
| ATGATGACAGACAAATGTTG+GGG | + | tig0023376:22555-22574 | None:intergenic | 35.0% | |
| GATGATGACAGACAAATGTT+GGG | + | tig0023376:22556-22575 | None:intergenic | 35.0% | |
| ! | TGATGATGACAGACAAATGT+TGG | + | tig0023376:22557-22576 | None:intergenic | 35.0% |
| CATTTGTCTGTCATCATCAT+TGG | - | tig0023376:22558-22577 | Msa1408160:CDS | 35.0% | |
| CATTTAAGCGATGACTATGA+TGG | + | tig0023376:22607-22626 | None:intergenic | 35.0% | |
| GCTGATACAACAAAGTAACT+AGG | - | tig0023376:22804-22823 | Msa1408160:CDS | 35.0% | |
| GTTCTTAGGAATTAAGGCTA+AGG | + | tig0023376:23013-23032 | None:intergenic | 35.0% | |
| GAAAGTAGAAGCAAGTTCTT+AGG | + | tig0023376:23027-23046 | None:intergenic | 35.0% | |
| ! | TGTTCTGTGTGCTTTTGTTA+TGG | - | tig0023376:23101-23120 | Msa1408160:intron | 35.0% |
| !! | CATATCAAGTTGAAGAAGTG+AGG | + | tig0023376:23201-23220 | None:intergenic | 35.0% |
| CTCACTTCTTCAACTTGATA+TGG | - | tig0023376:23199-23218 | Msa1408160:intron | 35.0% | |
| GTATCAGGTTCAATTGAACT+AGG | + | tig0023376:23295-23314 | None:intergenic | 35.0% | |
| GAAAGAACTACTCCACTATT+CGG | + | tig0023376:23468-23487 | None:intergenic | 35.0% | |
| ! | GTTTTTCTTACCAGGATAAG+AGG | - | tig0023376:23552-23571 | Msa1408160:intron | 35.0% |
| !! | TGTTTTTCAGAACAACTGTG+AGG | - | tig0023376:23665-23684 | Msa1408160:intron | 35.0% |
| TTTGCAATGTACTGCAAAAC+TGG | - | tig0023376:23690-23709 | Msa1408160:intron | 35.0% | |
| !! | CTTTTGATTGTAGACAAGCA+AGG | - | tig0023376:23714-23733 | Msa1408160:intron | 35.0% |
| AGTAGATATGCAACTGACAT+TGG | - | tig0023376:23867-23886 | Msa1408160:intron | 35.0% | |
| CAAGTTACTCATGTTGTACA+TGG | - | tig0023376:24191-24210 | Msa1408160:CDS | 35.0% | |
| TGCAGATGAGAACACTATAT+TGG | - | tig0023376:24351-24370 | Msa1408160:five_prime_UTR | 35.0% | |
| CAGTAACACAGACAGACAAA+CGG | - | tig0023376:21991-22010 | Msa1408160:three_prime_UTR | 40.0% | |
| ATAGGAGAAAACAGCTCTGT+AGG | + | tig0023376:22180-22199 | None:intergenic | 40.0% | |
| TGATGACAGACAAATGTTGG+GGG | + | tig0023376:22554-22573 | None:intergenic | 40.0% | |
| TCATTGGAAAACAACTGCAC+TGG | - | tig0023376:22574-22593 | Msa1408160:CDS | 40.0% | |
| !!! | TCTGTTTTGAGGGATAGGAT+AGG | - | tig0023376:22663-22682 | Msa1408160:CDS | 40.0% |
| GGATAGGATAGGATAGTACA+AGG | - | tig0023376:22674-22693 | Msa1408160:CDS | 40.0% | |
| TTTCTACTCCTTACGACTGT+AGG | - | tig0023376:23043-23062 | Msa1408160:intron | 40.0% | |
| TCAATCTTCCTACAGTCGTA+AGG | + | tig0023376:23054-23073 | None:intergenic | 40.0% | |
| CAAAAATGCCTGCATAGCAT+TGG | + | tig0023376:23317-23336 | None:intergenic | 40.0% | |
| ! | TGCTATGCAGGCATTTTTGT+TGG | - | tig0023376:23318-23337 | Msa1408160:intron | 40.0% |
| ! | GCTATGCAGGCATTTTTGTT+GGG | - | tig0023376:23319-23338 | Msa1408160:intron | 40.0% |
| ! | CTATGCAGGCATTTTTGTTG+GGG | - | tig0023376:23320-23339 | Msa1408160:intron | 40.0% |
| ! | TATGCAGGCATTTTTGTTGG+GGG | - | tig0023376:23321-23340 | Msa1408160:intron | 40.0% |
| TTAGACTGCTTCCTTCGAAA+CGG | - | tig0023376:23492-23511 | Msa1408160:intron | 40.0% | |
| AGTAAAGAGAACCGTTTCGA+AGG | + | tig0023376:23506-23525 | None:intergenic | 40.0% | |
| ATCCTGGTAAGAAAAACTGC+TGG | + | tig0023376:23549-23568 | None:intergenic | 40.0% | |
| TTTCTTACCAGGATAAGAGG+TGG | - | tig0023376:23555-23574 | Msa1408160:intron | 40.0% | |
| ! | GATGGATAACAGTTTCAGGT+GGG | + | tig0023376:23605-23624 | None:intergenic | 40.0% |
| GAAGAAGATACATTGCTCGA+TGG | + | tig0023376:23623-23642 | None:intergenic | 40.0% | |
| ATTGTAGACAAGCAAGGAGT+TGG | - | tig0023376:23720-23739 | Msa1408160:intron | 40.0% | |
| GGTCAAGCTTCTTCTGTTAT+TGG | - | tig0023376:23750-23769 | Msa1408160:intron | 40.0% | |
| !! | GAAGAAAGCATTGCAGCTAA+TGG | + | tig0023376:23780-23799 | None:intergenic | 40.0% |
| CATTGGCATTAGAAGTGATG+TGG | - | tig0023376:23884-23903 | Msa1408160:intron | 40.0% | |
| CATTAGAAGTGATGTGGTCA+AGG | - | tig0023376:23890-23909 | Msa1408160:intron | 40.0% | |
| ! | CAGAAGTTTTCATGTGCACA+AGG | + | tig0023376:24034-24053 | None:intergenic | 40.0% |
| GTTCGGTTACAATTGAAGGT+AGG | + | tig0023376:24321-24340 | None:intergenic | 40.0% | |
| !! | AGTGGTTCGGTTACAATTGA+AGG | + | tig0023376:24325-24344 | None:intergenic | 40.0% |
| TAACACAGACAGACAAACGG+TGG | - | tig0023376:21994-22013 | Msa1408160:three_prime_UTR | 45.0% | |
| AACACAGACAGACAAACGGT+GGG | - | tig0023376:21995-22014 | Msa1408160:three_prime_UTR | 45.0% | |
| TAGGTGTAGACATGATCACC+GGG | + | tig0023376:22161-22180 | None:intergenic | 45.0% | |
| GTAGGTGTAGACATGATCAC+CGG | + | tig0023376:22162-22181 | None:intergenic | 45.0% | |
| AGCTTGACCGTGATGAGAAT+AGG | + | tig0023376:22198-22217 | None:intergenic | 45.0% | |
| ACCTGATACCAATGCTATGC+AGG | - | tig0023376:23306-23325 | Msa1408160:intron | 45.0% | |
| ! | ATGCAGGCATTTTTGTTGGG+GGG | - | tig0023376:23322-23341 | Msa1408160:intron | 45.0% |
| AATCAGGAAAGGTGGGACAA+GGG | + | tig0023376:23431-23450 | None:intergenic | 45.0% | |
| AACCCACAATCAGGAAAGGT+GGG | + | tig0023376:23438-23457 | None:intergenic | 45.0% | |
| ! | CACCAGCAGTTTTTCTTACC+AGG | - | tig0023376:23544-23563 | Msa1408160:intron | 45.0% |
| ! | ATAACAGTTTCAGGTGGGTC+GGG | + | tig0023376:23600-23619 | None:intergenic | 45.0% |
| ! | GATAACAGTTTCAGGTGGGT+CGG | + | tig0023376:23601-23620 | None:intergenic | 45.0% |
| CGATGGATAACAGTTTCAGG+TGG | + | tig0023376:23606-23625 | None:intergenic | 45.0% | |
| GCTCGATGGATAACAGTTTC+AGG | + | tig0023376:23609-23628 | None:intergenic | 45.0% | |
| AAGCAAGGAGTTGGAAGAAG+TGG | - | tig0023376:23729-23748 | Msa1408160:intron | 45.0% | |
| CTCGGCATTAACAACTTGAG+AGG | + | tig0023376:23804-23823 | None:intergenic | 45.0% | |
| TTGTTAATGCCGAGTCCTGT+TGG | - | tig0023376:23810-23829 | Msa1408160:intron | 45.0% | |
| AGAAGTGATGTGGTCAAGGT+TGG | - | tig0023376:23894-23913 | Msa1408160:intron | 45.0% | |
| GAAGTGATGTGGTCAAGGTT+GGG | - | tig0023376:23895-23914 | Msa1408160:intron | 45.0% | |
| AAGTGATGTGGTCAAGGTTG+GGG | - | tig0023376:23896-23915 | Msa1408160:intron | 45.0% | |
| AGAAGACTTGGCTGTGAACT+TGG | - | tig0023376:23920-23939 | Msa1408160:intron | 45.0% | |
| GAAGACTTGGCTGTGAACTT+GGG | - | tig0023376:23921-23940 | Msa1408160:intron | 45.0% | |
| ATCTGCACAGCAAAGTGGTT+CGG | + | tig0023376:24338-24357 | None:intergenic | 45.0% | |
| TTCTCATCTGCACAGCAAAG+TGG | + | tig0023376:24343-24362 | None:intergenic | 45.0% | |
| !! | GTGGAGTGGACTAAGGTAAG+AGG | - | tig0023376:22027-22046 | Msa1408160:three_prime_UTR | 50.0% |
| GAGAGACACGACATCAAACC+CGG | - | tig0023376:22140-22159 | Msa1408160:three_prime_UTR | 50.0% | |
| ! | GTCTTGCGTCGGTCAGAATA+AGG | + | tig0023376:22532-22551 | None:intergenic | 50.0% |
| AAATGTTGGGGGTCTTGCGT+CGG | + | tig0023376:22543-22562 | None:intergenic | 50.0% | |
| GGAAAACAACTGCACTGGAC+TGG | - | tig0023376:22579-22598 | Msa1408160:CDS | 50.0% | |
| !! | GCCTGCATAGCATTGGTATC+AGG | + | tig0023376:23310-23329 | None:intergenic | 50.0% |
| ! | CATTTTTGTTGGGGGGAGCA+AGG | - | tig0023376:23329-23348 | Msa1408160:intron | 50.0% |
| ATCAGGAAAGGTGGGACAAG+GGG | + | tig0023376:23430-23449 | None:intergenic | 50.0% | |
| CAATCAGGAAAGGTGGGACA+AGG | + | tig0023376:23432-23451 | None:intergenic | 50.0% | |
| TGTCCCACCTTTCCTGATTG+TGG | - | tig0023376:23432-23451 | Msa1408160:intron | 50.0% | |
| GTCCCACCTTTCCTGATTGT+GGG | - | tig0023376:23433-23452 | Msa1408160:intron | 50.0% | |
| GAACCCACAATCAGGAAAGG+TGG | + | tig0023376:23439-23458 | None:intergenic | 50.0% | |
| CCTGAACCCACAATCAGGAA+AGG | + | tig0023376:23442-23461 | None:intergenic | 50.0% | |
| CCTTTCCTGATTGTGGGTTC+AGG | - | tig0023376:23439-23458 | Msa1408160:intron | 50.0% | |
| AATGCCGAGTCCTGTTGGTA+TGG | - | tig0023376:23815-23834 | Msa1408160:intron | 50.0% | |
| GTAGCCATACCAACAGGACT+CGG | + | tig0023376:23822-23841 | None:intergenic | 50.0% | |
| GAGTCCTGTTGGTATGGCTA+CGG | - | tig0023376:23821-23840 | Msa1408160:intron | 50.0% | |
| GTTACCGTAGCCATACCAAC+AGG | + | tig0023376:23828-23847 | None:intergenic | 50.0% | |
| CAAGGTTGGGGTAGAAGACT+TGG | - | tig0023376:23908-23927 | Msa1408160:intron | 50.0% | |
| ACTTGGCTGTGAACTTGGGA+TGG | - | tig0023376:23925-23944 | Msa1408160:intron | 50.0% | |
| ! | ATGGACTTGTTCCGATGAGG+AGG | - | tig0023376:23944-23963 | Msa1408160:intron | 50.0% |
| TCCAACTACCTCCTCCTCAT+CGG | + | tig0023376:23958-23977 | None:intergenic | 50.0% | |
| ACAGACAGACAAACGGTGGG+TGG | - | tig0023376:21998-22017 | Msa1408160:three_prime_UTR | 55.0% | |
| CAGACAGACAAACGGTGGGT+GGG | - | tig0023376:21999-22018 | Msa1408160:three_prime_UTR | 55.0% | |
| AGACAGACAAACGGTGGGTG+GGG | - | tig0023376:22000-22019 | Msa1408160:three_prime_UTR | 55.0% | |
| GGAGTGTGTGTGTGTCTGTC+TGG | - | tig0023376:22048-22067 | Msa1408160:three_prime_UTR | 55.0% | |
| GGTTGCCTGAACCCACAATC+AGG | + | tig0023376:23447-23466 | None:intergenic | 55.0% | |
| GGGTTCAGGCAACCGAATAG+TGG | - | tig0023376:23453-23472 | Msa1408160:intron | 55.0% | |
| GGTATGGCTACGGTAACAGC+AGG | - | tig0023376:23831-23850 | Msa1408160:intron | 55.0% | |
| ! | GGGATGGACTTGTTCCGATG+AGG | - | tig0023376:23941-23960 | Msa1408160:intron | 55.0% |
| ! | GACTTGTTCCGATGAGGAGG+AGG | - | tig0023376:23947-23966 | Msa1408160:intron | 55.0% |
| TCCGATGAGGAGGAGGTAGT+TGG | - | tig0023376:23954-23973 | Msa1408160:intron | 55.0% | |
| GAGGAGGAGGTAGTTGGAGA+TGG | - | tig0023376:23960-23979 | Msa1408160:intron | 55.0% | |
| !! | GGGTGGAGTGGAGTGGACTA+AGG | - | tig0023376:22020-22039 | Msa1408160:three_prime_UTR | 60.0% |
| !! | GTGGGACAAGGGGTTGGTGT+TGG | + | tig0023376:23420-23439 | None:intergenic | 60.0% |
| GGAAAGGTGGGACAAGGGGT+TGG | + | tig0023376:23426-23445 | None:intergenic | 60.0% | |
| GCACGTGCCACCTCTTATCC+TGG | + | tig0023376:23565-23584 | None:intergenic | 60.0% | |
| CAGACAAACGGTGGGTGGGG+TGG | - | tig0023376:22003-22022 | Msa1408160:three_prime_UTR | 65.0% | |
| AAACGGTGGGTGGGGTGGAG+TGG | - | tig0023376:22008-22027 | Msa1408160:three_prime_UTR | 65.0% | |
| GTGGGTGGGGTGGAGTGGAG+TGG | - | tig0023376:22013-22032 | Msa1408160:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023376 | gene | 21944 | 24400 | 21944 | ID=Msa1408160;Name=Msa1408160 |
| tig0023376 | mRNA | 21944 | 24400 | 21944 | ID=Msa1408160-mRNA-1;Parent=Msa1408160;Name=Msa1408160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=172|1|1|1|1|1|2|390|258 |
| tig0023376 | exon | 21944 | 23016 | 21944 | ID=Msa1408160-mRNA-1:exon:25506;Parent=Msa1408160-mRNA-1 |
| tig0023376 | exon | 24135 | 24400 | 24135 | ID=Msa1408160-mRNA-1:exon:25505;Parent=Msa1408160-mRNA-1 |
| tig0023376 | five_prime_UTR | 24229 | 24400 | 24229 | ID=Msa1408160-mRNA-1:five_prime_utr;Parent=Msa1408160-mRNA-1 |
| tig0023376 | CDS | 24135 | 24228 | 24135 | ID=Msa1408160-mRNA-1:cds;Parent=Msa1408160-mRNA-1 |
| tig0023376 | CDS | 22334 | 23016 | 22334 | ID=Msa1408160-mRNA-1:cds;Parent=Msa1408160-mRNA-1 |
| tig0023376 | three_prime_UTR | 21944 | 22333 | 21944 | ID=Msa1408160-mRNA-1:three_prime_utr;Parent=Msa1408160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
