AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0028420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028420 MtrunA17_Chr1g0184901 100.000 134 0 0 1 134 1 134 8.52e-94 266
Msa0028420 MtrunA17_Chr1g0211651 91.473 129 11 0 6 134 3 131 4.51e-82 236
Msa0028420 MtrunA17_Chr1g0148961 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0028420 MtrunA17_Chr1g0148951 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0028420 MtrunA17_Chr4g0024701 73.881 134 15 1 1 134 1 114 8.12e-55 167
Msa0028420 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 8.07e-40 130
Msa0028420 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 9.64e-40 129
Msa0028420 MtrunA17_Chr7g0268831 59.016 122 47 3 11 130 6 126 2.14e-39 129
Msa0028420 MtrunA17_Chr7g0273351 59.664 119 45 3 14 130 6 123 1.14e-38 127
Msa0028420 MtrunA17_Chr7g0259151 55.118 127 50 3 10 130 1 126 4.17e-38 126
Msa0028420 MtrunA17_Chr7g0273331 59.664 119 45 3 14 130 62 179 9.34e-38 127
Msa0028420 MtrunA17_Chr7g0272611 55.752 113 48 2 19 130 19 130 4.70e-36 120
Msa0028420 MtrunA17_Chr4g0031041 60.550 109 41 2 23 130 15 122 9.62e-36 120
Msa0028420 MtrunA17_Chr2g0327951 60.550 109 41 2 23 130 56 163 1.27e-35 121
Msa0028420 MtrunA17_Chr4g0035621 62.500 104 37 2 28 130 26 128 6.80e-35 118
Msa0028420 MtrunA17_Chr4g0032301 60.952 105 39 2 27 130 25 128 1.02e-34 117
Msa0028420 MtrunA17_Chr4g0031001 61.538 104 38 2 28 130 26 128 1.22e-34 117
Msa0028420 MtrunA17_Chr4g0031651 60.952 105 39 2 27 130 25 128 1.29e-34 117
Msa0028420 MtrunA17_Chr2g0327931 60.952 105 39 2 27 130 24 127 1.42e-34 117
Msa0028420 MtrunA17_Chr8g0379311 58.716 109 43 2 27 134 25 132 2.01e-34 117
Msa0028420 MtrunA17_Chr7g0273341 52.101 119 43 5 14 130 45 151 2.33e-27 99.4
Msa0028420 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 1.30e-20 80.9
Msa0028420 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 7.69e-19 78.2
Msa0028420 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 2.52e-18 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0028420 AT3G54560.1 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0028420 AT3G54560.2 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0028420 AT2G38810.1 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0028420 AT2G38810.4 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0028420 AT2G38810.3 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0028420 AT2G38810.2 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0028420 AT1G52740.1 82.836 134 23 0 1 134 1 134 2.15e-71 210
Msa0028420 AT4G13570.1 78.022 91 20 0 34 124 28 118 3.31e-47 148
Msa0028420 AT4G13570.2 78.889 90 19 0 35 124 35 124 6.73e-47 148
Msa0028420 AT3G20670.1 64.545 110 37 2 24 132 14 122 6.60e-40 130
Msa0028420 AT4G27230.2 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0028420 AT4G27230.1 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0028420 AT5G54640.1 64.545 110 37 2 24 132 14 122 1.17e-39 130
Msa0028420 AT1G51060.1 63.889 108 37 2 24 130 14 120 4.32e-39 128
Msa0028420 AT5G02560.1 60.177 113 43 2 23 134 21 132 1.17e-38 128
Msa0028420 AT1G08880.1 59.829 117 44 3 14 128 9 124 1.62e-38 127
Msa0028420 AT1G54690.1 59.829 117 44 3 14 128 9 124 2.02e-38 127
Msa0028420 AT5G27670.1 60.177 113 43 2 19 130 18 129 9.53e-37 123
Msa0028420 AT5G59870.1 59.633 109 42 2 23 130 21 128 7.61e-35 118
Msa0028420 AT5G02560.2 49.635 137 43 3 23 134 21 156 2.98e-33 115

Find 60 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGTGCTGTTTATTTATT+AGG 0.136679 1_1:+53330977 Msa0028420:three_prime_UTR
CGAAAAGAAAATAATGAATA+TGG 0.226044 1_1:-53329362 None:intergenic
GGCATTTGCAGCTTGCTATC+AGG 0.247896 1_1:+53330829 Msa0028420:CDS
AGCAACAGCTGCAGTGTATT+TGG 0.282329 1_1:+53330719 Msa0028420:CDS
TTCTTCTCGTGCTGGAATTC+AGG 0.284428 1_1:+53329661 Msa0028420:CDS
AAAGCAAAGAAATCATTCTT+TGG 0.335830 1_1:-53330943 None:intergenic
GGTATTCTTATGTGGTCATT+TGG 0.337403 1_1:+53331092 Msa0028420:three_prime_UTR
TTGATATGGTAGTGTGTAAA+TGG 0.352891 1_1:+53331068 Msa0028420:three_prime_UTR
TTTATTATGACTTGAATTGA+TGG 0.353544 1_1:+53331009 Msa0028420:three_prime_UTR
AGTGTATTTGGCATCCATTC+TGG 0.360664 1_1:+53330731 Msa0028420:CDS
CAGCAATTGTTCCCTTGATA+AGG 0.371937 1_1:-53330872 None:intergenic
CTTATCAAGGGAACAATTGC+TGG 0.372156 1_1:+53330873 Msa0028420:CDS
GTGGTGCTGTTTATTTATTA+GGG 0.395578 1_1:+53330978 Msa0028420:three_prime_UTR
CTCCGACACGTCCATTAGCT+TGG 0.422586 1_1:-53330698 None:intergenic
CTTTCTCTCTCTCGATTCCA+AGG 0.423023 1_1:+53329432 Msa0028420:five_prime_UTR
TTCTTATGTGGTCATTTGGA+TGG 0.435634 1_1:+53331096 Msa0028420:three_prime_UTR
AGCAATTGTTCCCTTGATAA+GGG 0.441041 1_1:-53330871 None:intergenic
GAAAAGAAAATAATGAATAT+GGG 0.441414 1_1:-53329361 None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG 0.447447 1_1:+53330687 Msa0028420:CDS
TTAGATATTTGTGATGCTGT+TGG 0.467051 1_1:+53331134 Msa0028420:three_prime_UTR
ACTTCTCGTTCTTCTCGTGC+TGG 0.468244 1_1:+53329653 Msa0028420:CDS
AAATGCTAGCAAAGATTTGA+AGG 0.477120 1_1:+53330788 Msa0028420:CDS
GACTGCTGAAGTTCTTGAGC+TGG 0.480553 1_1:+53330761 Msa0028420:CDS
CTCTTTGCTTCAGCTGTCTG+TGG 0.485476 1_1:-53330674 None:intergenic
GCATTTGCAGCTTGCTATCA+GGG 0.487874 1_1:+53330830 Msa0028420:CDS
GCTGAAGTTCTTGAGCTGGC+TGG 0.490963 1_1:+53330765 Msa0028420:CDS
TCAGGTGATTAAGCAATGGC+AGG 0.495436 1_1:+53329560 Msa0028420:intron
ATGGCAGGAAAAGGAGGAAA+AGG 0.512104 1_1:+53329575 Msa0028420:CDS
GGAACTTGATACCCTTATCA+AGG 0.512125 1_1:+53330860 Msa0028420:CDS
TTTGATCTGTGCAATGGTTG+GGG 0.512671 1_1:+53331227 Msa0028420:three_prime_UTR
TCAAAACAAACAAAACAAGC+AGG 0.513874 1_1:-53331209 None:intergenic
GATTAAGCAATGGCAGGAAA+AGG 0.523608 1_1:+53329566 Msa0028420:exon
CTTGTCTTTGTTAGCCGCGG+TGG 0.527714 1_1:-53329615 None:intergenic
GAATTGATGGTGATCACAGT+AGG 0.529426 1_1:+53331022 Msa0028420:three_prime_UTR
GTCCTTGTCTTTGTTAGCCG+CGG 0.546728 1_1:-53329618 None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG 0.563947 1_1:+53330796 Msa0028420:CDS
TGGTGGTTGTAGTTTCCTGT+GGG 0.573166 1_1:+53330645 Msa0028420:intron
ATGGTGGTTGTAGTTTCCTG+TGG 0.574055 1_1:+53330644 Msa0028420:intron
GGTTGTAGTTTCCTGTGGGT+AGG 0.590033 1_1:+53330649 Msa0028420:intron
AGCAGTCAGATACTCCAGAA+TGG 0.591746 1_1:-53330745 None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG 0.592261 1_1:-53330825 None:intergenic
GCTTGCTATCAGGGGAGATG+AGG 0.593400 1_1:+53330839 Msa0028420:CDS
GTCCAAGCTAATGGACGTGT+CGG 0.596665 1_1:+53330696 Msa0028420:CDS
TAAATGGTGGTATTCTTATG+TGG 0.602361 1_1:+53331084 Msa0028420:three_prime_UTR
AAAAGAAAATAATGAATATG+GGG 0.603363 1_1:-53329360 None:intergenic
TAAGCAATGGCAGGAAAAGG+AGG 0.606722 1_1:+53329569 Msa0028420:exon
AGCACGAGAAGAACGAGAAG+TGG 0.609010 1_1:-53329651 None:intergenic
CATTTGCAGCTTGCTATCAG+GGG 0.612353 1_1:+53330831 Msa0028420:CDS
AATTGATGGTGATCACAGTA+GGG 0.620882 1_1:+53331023 Msa0028420:three_prime_UTR
AAGGGAACAATTGCTGGTGG+TGG 0.621502 1_1:+53330879 Msa0028420:CDS
CAAAACAAACAAAACAAGCA+GGG 0.623971 1_1:-53331208 None:intergenic
GAACTTGATACCCTTATCAA+GGG 0.630061 1_1:+53330861 Msa0028420:CDS
ATCAAGGACTTGTGGATGTG+AGG 0.631787 1_1:-53330909 None:intergenic
GCACGAGAAGAACGAGAAGT+GGG 0.642443 1_1:-53329650 None:intergenic
CACCGCGGCTAACAAAGACA+AGG 0.646788 1_1:+53329616 Msa0028420:CDS
TGTCTGTGGATCCTACCCAC+AGG 0.647982 1_1:-53330660 None:intergenic
ATCAAGGGAACAATTGCTGG+TGG 0.659902 1_1:+53330876 Msa0028420:CDS
ATATGGTAGTGTGTAAATGG+TGG 0.704651 1_1:+53331071 Msa0028420:three_prime_UTR
AGGTGAAGAGGATTACACCA+AGG 0.739394 1_1:+53330808 Msa0028420:CDS
CGTTGCAGCGAAAACCACCG+CGG 0.789660 1_1:+53329601 Msa0028420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTTAATTTTGATTTA+AGG + chr1_1:53330311-53330330 Msa0028420:intron 10.0%
!!! ATAAGTTTAATTTTGATTTA+AGG + chr1_1:53330311-53330330 Msa0028420:intron 10.0%
!! AAAAGAAAATAATGAATATG+GGG - chr1_1:53329363-53329382 None:intergenic 15.0%
!! GAAAAGAAAATAATGAATAT+GGG - chr1_1:53329364-53329383 None:intergenic 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG + chr1_1:53329835-53329854 Msa0028420:intron 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG + chr1_1:53329836-53329855 Msa0028420:intron 15.0%
!! AAAAGAAAATAATGAATATG+GGG - chr1_1:53329363-53329382 None:intergenic 15.0%
!! GAAAAGAAAATAATGAATAT+GGG - chr1_1:53329364-53329383 None:intergenic 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG + chr1_1:53329835-53329854 Msa0028420:intron 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG + chr1_1:53329836-53329855 Msa0028420:intron 15.0%
!! CGAAAAGAAAATAATGAATA+TGG - chr1_1:53329365-53329384 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG + chr1_1:53329714-53329733 Msa0028420:intron 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG + chr1_1:53329715-53329734 Msa0028420:intron 20.0%
!! TATATAATCAAACCCTAATT+GGG - chr1_1:53329782-53329801 None:intergenic 20.0%
!! TTAGCAAAGATTAAAACTAT+GGG - chr1_1:53329902-53329921 None:intergenic 20.0%
!! TTTAGCAAAGATTAAAACTA+TGG - chr1_1:53329903-53329922 None:intergenic 20.0%
!!! TCTCTGTTCTTTAATTTTTT+AGG + chr1_1:53329941-53329960 Msa0028420:intron 20.0%
!!! CTCTGTTCTTTAATTTTTTA+GGG + chr1_1:53329942-53329961 Msa0028420:intron 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG + chr1_1:53329947-53329966 Msa0028420:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG + chr1_1:53329948-53329967 Msa0028420:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG - chr1_1:53330552-53330571 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG - chr1_1:53330591-53330610 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG + chr1_1:53330625-53330644 Msa0028420:intron 20.0%
!! TTTATTATGACTTGAATTGA+TGG + chr1_1:53331009-53331028 Msa0028420:three_prime_UTR 20.0%
!!! GAATTTTGAATGAATTGATA+TGG + chr1_1:53331054-53331073 Msa0028420:three_prime_UTR 20.0%
!! CGAAAAGAAAATAATGAATA+TGG - chr1_1:53329365-53329384 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG + chr1_1:53329714-53329733 Msa0028420:intron 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG + chr1_1:53329715-53329734 Msa0028420:intron 20.0%
!! TATATAATCAAACCCTAATT+GGG - chr1_1:53329782-53329801 None:intergenic 20.0%
!! TTAGCAAAGATTAAAACTAT+GGG - chr1_1:53329902-53329921 None:intergenic 20.0%
!! TTTAGCAAAGATTAAAACTA+TGG - chr1_1:53329903-53329922 None:intergenic 20.0%
!!! TCTCTGTTCTTTAATTTTTT+AGG + chr1_1:53329941-53329960 Msa0028420:intron 20.0%
!!! CTCTGTTCTTTAATTTTTTA+GGG + chr1_1:53329942-53329961 Msa0028420:intron 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG + chr1_1:53329947-53329966 Msa0028420:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG + chr1_1:53329948-53329967 Msa0028420:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG - chr1_1:53330552-53330571 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG - chr1_1:53330591-53330610 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG + chr1_1:53330625-53330644 Msa0028420:intron 20.0%
!! TTTATTATGACTTGAATTGA+TGG + chr1_1:53331009-53331028 Msa0028420:three_prime_UTR 20.0%
!!! GAATTTTGAATGAATTGATA+TGG + chr1_1:53331054-53331073 Msa0028420:three_prime_UTR 20.0%
! AAATCGAAAAAACGAAGAAA+GGG - chr1_1:53329701-53329720 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG - chr1_1:53329702-53329721 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG + chr1_1:53329720-53329739 Msa0028420:intron 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG + chr1_1:53329721-53329740 Msa0028420:intron 25.0%
! CTATATAATCAAACCCTAAT+TGG - chr1_1:53329783-53329802 None:intergenic 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG + chr1_1:53329841-53329860 Msa0028420:intron 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG + chr1_1:53329842-53329861 Msa0028420:intron 25.0%
! AAGAAAAAACATGTTATCAG+GGG - chr1_1:53330067-53330086 None:intergenic 25.0%
! CAAGAAAAAACATGTTATCA+GGG - chr1_1:53330068-53330087 None:intergenic 25.0%
! ACAAGAAAAAACATGTTATC+AGG - chr1_1:53330069-53330088 None:intergenic 25.0%
! ACAACTTCAATTCAAATTGA+AGG + chr1_1:53330180-53330199 Msa0028420:intron 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG + chr1_1:53330379-53330398 Msa0028420:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG + chr1_1:53330444-53330463 Msa0028420:intron 25.0%
!!! CAAATGTCCTTTTATTTAAC+CGG + chr1_1:53330471-53330490 Msa0028420:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG + chr1_1:53330506-53330525 Msa0028420:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG - chr1_1:53330583-53330602 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG - chr1_1:53330584-53330603 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG - chr1_1:53330946-53330965 None:intergenic 25.0%
! AAATCGAAAAAACGAAGAAA+GGG - chr1_1:53329701-53329720 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG - chr1_1:53329702-53329721 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG + chr1_1:53329720-53329739 Msa0028420:intron 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG + chr1_1:53329721-53329740 Msa0028420:intron 25.0%
! CTATATAATCAAACCCTAAT+TGG - chr1_1:53329783-53329802 None:intergenic 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG + chr1_1:53329841-53329860 Msa0028420:intron 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG + chr1_1:53329842-53329861 Msa0028420:intron 25.0%
! AAGAAAAAACATGTTATCAG+GGG - chr1_1:53330067-53330086 None:intergenic 25.0%
! CAAGAAAAAACATGTTATCA+GGG - chr1_1:53330068-53330087 None:intergenic 25.0%
! ACAAGAAAAAACATGTTATC+AGG - chr1_1:53330069-53330088 None:intergenic 25.0%
! ACAACTTCAATTCAAATTGA+AGG + chr1_1:53330180-53330199 Msa0028420:intron 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG + chr1_1:53330379-53330398 Msa0028420:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG + chr1_1:53330444-53330463 Msa0028420:intron 25.0%
!!! CAAATGTCCTTTTATTTAAC+CGG + chr1_1:53330471-53330490 Msa0028420:intron 25.0%
! TGAGATTAAATTATTGCCTT+TGG + chr1_1:53330506-53330525 Msa0028420:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG - chr1_1:53330583-53330602 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG - chr1_1:53330584-53330603 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG - chr1_1:53330946-53330965 None:intergenic 25.0%
TGTTTAAACGAAGAAGAGAA+GGG - chr1_1:53329474-53329493 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG - chr1_1:53329475-53329494 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG + chr1_1:53329556-53329575 Msa0028420:intron 30.0%
AAACGAAGAAAGGGAAAAAA+GGG - chr1_1:53329692-53329711 None:intergenic 30.0%
AAAACGAAGAAAGGGAAAAA+AGG - chr1_1:53329693-53329712 None:intergenic 30.0%
!! TAATTCTGAGATACCCAATT+AGG + chr1_1:53329766-53329785 Msa0028420:intron 30.0%
!! AATTCTGAGATACCCAATTA+GGG + chr1_1:53329767-53329786 Msa0028420:intron 30.0%
! TTTGAAACAGAATTAAGCGA+TGG + chr1_1:53329971-53329990 Msa0028420:intron 30.0%
TTTATAATCAACCCCCAATT+GGG - chr1_1:53330007-53330026 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG + chr1_1:53330282-53330301 Msa0028420:intron 30.0%
AACATCTACATGAAATCCAA+AGG - chr1_1:53330525-53330544 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG + chr1_1:53330628-53330647 Msa0028420:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG + chr1_1:53330788-53330807 Msa0028420:CDS 30.0%
!! GTGGTGCTGTTTATTTATTA+GGG + chr1_1:53330978-53330997 Msa0028420:three_prime_UTR 30.0%
! TTGATATGGTAGTGTGTAAA+TGG + chr1_1:53331068-53331087 Msa0028420:three_prime_UTR 30.0%
TAAATGGTGGTATTCTTATG+TGG + chr1_1:53331084-53331103 Msa0028420:three_prime_UTR 30.0%
TTAGATATTTGTGATGCTGT+TGG + chr1_1:53331134-53331153 Msa0028420:three_prime_UTR 30.0%
CAAAACAAACAAAACAAGCA+GGG - chr1_1:53331211-53331230 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG - chr1_1:53331212-53331231 None:intergenic 30.0%
TGTTTAAACGAAGAAGAGAA+GGG - chr1_1:53329474-53329493 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG - chr1_1:53329475-53329494 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG + chr1_1:53329556-53329575 Msa0028420:intron 30.0%
AAACGAAGAAAGGGAAAAAA+GGG - chr1_1:53329692-53329711 None:intergenic 30.0%
AAAACGAAGAAAGGGAAAAA+AGG - chr1_1:53329693-53329712 None:intergenic 30.0%
!! TAATTCTGAGATACCCAATT+AGG + chr1_1:53329766-53329785 Msa0028420:intron 30.0%
!! AATTCTGAGATACCCAATTA+GGG + chr1_1:53329767-53329786 Msa0028420:intron 30.0%
! TTTGAAACAGAATTAAGCGA+TGG + chr1_1:53329971-53329990 Msa0028420:intron 30.0%
TTTATAATCAACCCCCAATT+GGG - chr1_1:53330007-53330026 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG + chr1_1:53330282-53330301 Msa0028420:intron 30.0%
AACATCTACATGAAATCCAA+AGG - chr1_1:53330525-53330544 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG + chr1_1:53330628-53330647 Msa0028420:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG + chr1_1:53330788-53330807 Msa0028420:CDS 30.0%
!! GTGGTGCTGTTTATTTATTA+GGG + chr1_1:53330978-53330997 Msa0028420:three_prime_UTR 30.0%
! TTGATATGGTAGTGTGTAAA+TGG + chr1_1:53331068-53331087 Msa0028420:three_prime_UTR 30.0%
TAAATGGTGGTATTCTTATG+TGG + chr1_1:53331084-53331103 Msa0028420:three_prime_UTR 30.0%
TTAGATATTTGTGATGCTGT+TGG + chr1_1:53331134-53331153 Msa0028420:three_prime_UTR 30.0%
CAAAACAAACAAAACAAGCA+GGG - chr1_1:53331211-53331230 None:intergenic 30.0%
TCAAAACAAACAAAACAAGC+AGG - chr1_1:53331212-53331231 None:intergenic 30.0%
GAAAAGTAGAAGAGAAACCT+TGG - chr1_1:53329452-53329471 None:intergenic 35.0%
! AGGGTTTGAAACAAGGAATT+AGG + chr1_1:53329740-53329759 Msa0028420:intron 35.0%
! ACAGAATTAAGCGATGGTTT+TGG + chr1_1:53329977-53329996 Msa0028420:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG + chr1_1:53329978-53329997 Msa0028420:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG - chr1_1:53330008-53330027 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG - chr1_1:53330493-53330512 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG + chr1_1:53330861-53330880 Msa0028420:CDS 35.0%
AGCAATTGTTCCCTTGATAA+GGG - chr1_1:53330874-53330893 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG - chr1_1:53330920-53330939 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG - chr1_1:53330928-53330947 None:intergenic 35.0%
!! GGTGGTGCTGTTTATTTATT+AGG + chr1_1:53330977-53330996 Msa0028420:three_prime_UTR 35.0%
!! AATTGATGGTGATCACAGTA+GGG + chr1_1:53331023-53331042 Msa0028420:three_prime_UTR 35.0%
! ATATGGTAGTGTGTAAATGG+TGG + chr1_1:53331071-53331090 Msa0028420:three_prime_UTR 35.0%
GGTATTCTTATGTGGTCATT+TGG + chr1_1:53331092-53331111 Msa0028420:three_prime_UTR 35.0%
TTCTTATGTGGTCATTTGGA+TGG + chr1_1:53331096-53331115 Msa0028420:three_prime_UTR 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG + chr1_1:53331221-53331240 Msa0028420:three_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG + chr1_1:53331226-53331245 Msa0028420:three_prime_UTR 35.0%
GAAAAGTAGAAGAGAAACCT+TGG - chr1_1:53329452-53329471 None:intergenic 35.0%
! AGGGTTTGAAACAAGGAATT+AGG + chr1_1:53329740-53329759 Msa0028420:intron 35.0%
! ACAGAATTAAGCGATGGTTT+TGG + chr1_1:53329977-53329996 Msa0028420:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG + chr1_1:53329978-53329997 Msa0028420:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG - chr1_1:53330008-53330027 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG - chr1_1:53330493-53330512 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG + chr1_1:53330861-53330880 Msa0028420:CDS 35.0%
AGCAATTGTTCCCTTGATAA+GGG - chr1_1:53330874-53330893 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG - chr1_1:53330920-53330939 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG - chr1_1:53330928-53330947 None:intergenic 35.0%
!! GGTGGTGCTGTTTATTTATT+AGG + chr1_1:53330977-53330996 Msa0028420:three_prime_UTR 35.0%
!! AATTGATGGTGATCACAGTA+GGG + chr1_1:53331023-53331042 Msa0028420:three_prime_UTR 35.0%
! ATATGGTAGTGTGTAAATGG+TGG + chr1_1:53331071-53331090 Msa0028420:three_prime_UTR 35.0%
GGTATTCTTATGTGGTCATT+TGG + chr1_1:53331092-53331111 Msa0028420:three_prime_UTR 35.0%
TTCTTATGTGGTCATTTGGA+TGG + chr1_1:53331096-53331115 Msa0028420:three_prime_UTR 35.0%
!!! GTTTGTTTTGATCTGTGCAA+TGG + chr1_1:53331221-53331240 Msa0028420:three_prime_UTR 35.0%
! TTTTGATCTGTGCAATGGTT+GGG + chr1_1:53331226-53331245 Msa0028420:three_prime_UTR 35.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG + chr1_1:53329542-53329561 Msa0028420:intron 40.0%
GATTAAGCAATGGCAGGAAA+AGG + chr1_1:53329566-53329585 Msa0028420:exon 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG + chr1_1:53329733-53329752 Msa0028420:intron 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG + chr1_1:53329990-53330009 Msa0028420:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG + chr1_1:53329991-53330010 Msa0028420:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG - chr1_1:53330481-53330500 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG + chr1_1:53330687-53330706 Msa0028420:CDS 40.0%
AGTGTATTTGGCATCCATTC+TGG + chr1_1:53330731-53330750 Msa0028420:CDS 40.0%
GCAAAGATTTGAAGGTGAAG+AGG + chr1_1:53330796-53330815 Msa0028420:CDS 40.0%
GGAACTTGATACCCTTATCA+AGG + chr1_1:53330860-53330879 Msa0028420:CDS 40.0%
CAGCAATTGTTCCCTTGATA+AGG - chr1_1:53330875-53330894 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG + chr1_1:53330873-53330892 Msa0028420:CDS 40.0%
!! TCTTTGCTTTTGTTGTCACG+TGG + chr1_1:53330956-53330975 Msa0028420:three_prime_UTR 40.0%
!! GAATTGATGGTGATCACAGT+AGG + chr1_1:53331022-53331041 Msa0028420:three_prime_UTR 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG + chr1_1:53331225-53331244 Msa0028420:three_prime_UTR 40.0%
TTTGATCTGTGCAATGGTTG+GGG + chr1_1:53331227-53331246 Msa0028420:three_prime_UTR 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG + chr1_1:53329542-53329561 Msa0028420:intron 40.0%
GATTAAGCAATGGCAGGAAA+AGG + chr1_1:53329566-53329585 Msa0028420:exon 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG + chr1_1:53329733-53329752 Msa0028420:intron 40.0%
!!! ATGGTTTTGGGATACCCAAT+TGG + chr1_1:53329990-53330009 Msa0028420:intron 40.0%
!!! TGGTTTTGGGATACCCAATT+GGG + chr1_1:53329991-53330010 Msa0028420:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG - chr1_1:53330481-53330500 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG + chr1_1:53330687-53330706 Msa0028420:CDS 40.0%
AGTGTATTTGGCATCCATTC+TGG + chr1_1:53330731-53330750 Msa0028420:CDS 40.0%
GCAAAGATTTGAAGGTGAAG+AGG + chr1_1:53330796-53330815 Msa0028420:CDS 40.0%
GGAACTTGATACCCTTATCA+AGG + chr1_1:53330860-53330879 Msa0028420:CDS 40.0%
CAGCAATTGTTCCCTTGATA+AGG - chr1_1:53330875-53330894 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG + chr1_1:53330873-53330892 Msa0028420:CDS 40.0%
!! TCTTTGCTTTTGTTGTCACG+TGG + chr1_1:53330956-53330975 Msa0028420:three_prime_UTR 40.0%
!! GAATTGATGGTGATCACAGT+AGG + chr1_1:53331022-53331041 Msa0028420:three_prime_UTR 40.0%
!! GTTTTGATCTGTGCAATGGT+TGG + chr1_1:53331225-53331244 Msa0028420:three_prime_UTR 40.0%
CTTTCTCTCTCTCGATTCCA+AGG + chr1_1:53329432-53329451 Msa0028420:five_prime_UTR 45.0%
! TTCATTGACGCGTTTTGCTC+TGG + chr1_1:53329532-53329551 Msa0028420:intron 45.0%
TCAGGTGATTAAGCAATGGC+AGG + chr1_1:53329560-53329579 Msa0028420:intron 45.0%
TAAGCAATGGCAGGAAAAGG+AGG + chr1_1:53329569-53329588 Msa0028420:exon 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG + chr1_1:53329575-53329594 Msa0028420:CDS 45.0%
TTCTTCTCGTGCTGGAATTC+AGG + chr1_1:53329661-53329680 Msa0028420:CDS 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG + chr1_1:53329992-53330011 Msa0028420:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG + chr1_1:53329993-53330012 Msa0028420:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG + chr1_1:53330644-53330663 Msa0028420:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG + chr1_1:53330645-53330664 Msa0028420:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG + chr1_1:53330719-53330738 Msa0028420:CDS 45.0%
AGCAGTCAGATACTCCAGAA+TGG - chr1_1:53330748-53330767 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG + chr1_1:53330808-53330827 Msa0028420:CDS 45.0%
ATAGCAAGCTGCAAATGCCT+TGG - chr1_1:53330828-53330847 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG + chr1_1:53330830-53330849 Msa0028420:CDS 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG + chr1_1:53330831-53330850 Msa0028420:CDS 45.0%
ATCAAGGGAACAATTGCTGG+TGG + chr1_1:53330876-53330895 Msa0028420:CDS 45.0%
ATCAAGGACTTGTGGATGTG+AGG - chr1_1:53330912-53330931 None:intergenic 45.0%
!! TTGCTTTTGTTGTCACGTGG+TGG + chr1_1:53330959-53330978 Msa0028420:three_prime_UTR 45.0%
CTTTCTCTCTCTCGATTCCA+AGG + chr1_1:53329432-53329451 Msa0028420:five_prime_UTR 45.0%
! TTCATTGACGCGTTTTGCTC+TGG + chr1_1:53329532-53329551 Msa0028420:intron 45.0%
TCAGGTGATTAAGCAATGGC+AGG + chr1_1:53329560-53329579 Msa0028420:intron 45.0%
TAAGCAATGGCAGGAAAAGG+AGG + chr1_1:53329569-53329588 Msa0028420:exon 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG + chr1_1:53329575-53329594 Msa0028420:CDS 45.0%
TTCTTCTCGTGCTGGAATTC+AGG + chr1_1:53329661-53329680 Msa0028420:CDS 45.0%
!!! GGTTTTGGGATACCCAATTG+GGG + chr1_1:53329992-53330011 Msa0028420:intron 45.0%
!!! GTTTTGGGATACCCAATTGG+GGG + chr1_1:53329993-53330012 Msa0028420:intron 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG + chr1_1:53330644-53330663 Msa0028420:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG + chr1_1:53330645-53330664 Msa0028420:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG + chr1_1:53330719-53330738 Msa0028420:CDS 45.0%
AGCAGTCAGATACTCCAGAA+TGG - chr1_1:53330748-53330767 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG + chr1_1:53330808-53330827 Msa0028420:CDS 45.0%
ATAGCAAGCTGCAAATGCCT+TGG - chr1_1:53330828-53330847 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG + chr1_1:53330830-53330849 Msa0028420:CDS 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG + chr1_1:53330831-53330850 Msa0028420:CDS 45.0%
ATCAAGGGAACAATTGCTGG+TGG + chr1_1:53330876-53330895 Msa0028420:CDS 45.0%
ATCAAGGACTTGTGGATGTG+AGG - chr1_1:53330912-53330931 None:intergenic 45.0%
!! TTGCTTTTGTTGTCACGTGG+TGG + chr1_1:53330959-53330978 Msa0028420:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + chr1_1:53330206-53330225 Msa0028420:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + chr1_1:53330206-53330225 Msa0028420:intron 5.0%
GTCCTTGTCTTTGTTAGCCG+CGG - chr1_1:53329621-53329640 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG - chr1_1:53329653-53329672 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG - chr1_1:53329654-53329673 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG + chr1_1:53329653-53329672 Msa0028420:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG + chr1_1:53330649-53330668 Msa0028420:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG - chr1_1:53330677-53330696 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG + chr1_1:53330696-53330715 Msa0028420:CDS 50.0%
GACTGCTGAAGTTCTTGAGC+TGG + chr1_1:53330761-53330780 Msa0028420:CDS 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG + chr1_1:53330829-53330848 Msa0028420:CDS 50.0%
AAGGGAACAATTGCTGGTGG+TGG + chr1_1:53330879-53330898 Msa0028420:CDS 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG - chr1_1:53329621-53329640 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG - chr1_1:53329653-53329672 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG - chr1_1:53329654-53329673 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG + chr1_1:53329653-53329672 Msa0028420:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG + chr1_1:53330649-53330668 Msa0028420:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG - chr1_1:53330677-53330696 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG + chr1_1:53330696-53330715 Msa0028420:CDS 50.0%
GACTGCTGAAGTTCTTGAGC+TGG + chr1_1:53330761-53330780 Msa0028420:CDS 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG + chr1_1:53330829-53330848 Msa0028420:CDS 50.0%
AAGGGAACAATTGCTGGTGG+TGG + chr1_1:53330879-53330898 Msa0028420:CDS 50.0%
CTTGTCTTTGTTAGCCGCGG+TGG - chr1_1:53329618-53329637 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG + chr1_1:53329616-53329635 Msa0028420:CDS 55.0%
TGTCTGTGGATCCTACCCAC+AGG - chr1_1:53330663-53330682 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG - chr1_1:53330701-53330720 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG + chr1_1:53330765-53330784 Msa0028420:CDS 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG + chr1_1:53330839-53330858 Msa0028420:CDS 55.0%
CTTGTCTTTGTTAGCCGCGG+TGG - chr1_1:53329618-53329637 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG + chr1_1:53329616-53329635 Msa0028420:CDS 55.0%
TGTCTGTGGATCCTACCCAC+AGG - chr1_1:53330663-53330682 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG - chr1_1:53330701-53330720 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG + chr1_1:53330765-53330784 Msa0028420:CDS 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG + chr1_1:53330839-53330858 Msa0028420:CDS 55.0%
CGTTGCAGCGAAAACCACCG+CGG + chr1_1:53329601-53329620 Msa0028420:CDS 60.0%
CGTTGCAGCGAAAACCACCG+CGG + chr1_1:53329601-53329620 Msa0028420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 53329359 53331249 53329359 ID=Msa0028420;Name=Msa0028420
chr1_1 mRNA 53329359 53331249 53329359 ID=Msa0028420-mRNA-1;Parent=Msa0028420;Name=Msa0028420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=106|1|1|1|0.5|0.33|3|296|134
chr1_1 exon 53329359 53329453 53329359 ID=Msa0028420-mRNA-1:exon:15699;Parent=Msa0028420-mRNA-1
chr1_1 exon 53329564 53329682 53329564 ID=Msa0028420-mRNA-1:exon:15700;Parent=Msa0028420-mRNA-1
chr1_1 exon 53330657 53331249 53330657 ID=Msa0028420-mRNA-1:exon:15701;Parent=Msa0028420-mRNA-1
chr1_1 five_prime_UTR 53329359 53329453 53329359 ID=Msa0028420-mRNA-1:five_prime_utr;Parent=Msa0028420-mRNA-1
chr1_1 five_prime_UTR 53329564 53329574 53329564 ID=Msa0028420-mRNA-1:five_prime_utr;Parent=Msa0028420-mRNA-1
chr1_1 CDS 53329575 53329682 53329575 ID=Msa0028420-mRNA-1:cds;Parent=Msa0028420-mRNA-1
chr1_1 CDS 53330657 53330953 53330657 ID=Msa0028420-mRNA-1:cds;Parent=Msa0028420-mRNA-1
chr1_1 three_prime_UTR 53330954 53331249 53330954 ID=Msa0028420-mRNA-1:three_prime_utr;Parent=Msa0028420-mRNA-1
Gene Sequence

>Msa0028420

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>Msa0028420

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*