AlfalfaGEDB | Msa0369170

M. sativa cultivar zhongmu-4 / Msa0369170

KEGG: -
GO: GO:0005575 GO:0005576 GO:0048046
PFAM: PF13472.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369170	XP_003600886.1	94.660	206	3	1	1	206	1	198	2.56e-139	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369170	sp\|Q9SRM5\|CPR49_ARATH	67.961	206	58	1	1	206	1	198	1.61e-105	306

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369170	G7JB85	94.660	206	3	1	1	206	1	198	1.22e-139	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0369170	0.804666	1.936525e-49	-8.615850e-47
Msa0043670	Msa0369170	-0.818308	2.097128e-52	-8.615850e-47
Msa0089630	Msa0369170	0.809189	2.140238e-50	-8.615850e-47
Msa0110970	Msa0369170	0.820941	5.257580e-53	-8.615850e-47
Msa0157290	Msa0369170	0.805032	1.623650e-49	-8.615850e-47
Msa0182620	Msa0369170	-0.823769	1.158913e-53	-8.615850e-47
Msa0197420	Msa0369170	0.832687	8.199933e-56	-8.615850e-47
Msa0197930	Msa0369170	0.826834	2.181850e-54	-8.615850e-47
Msa0203030	Msa0369170	0.809815	1.570318e-50	-8.615850e-47
Msa0219190	Msa0369170	0.809002	2.346990e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369170	MtrunA17_Chr3g0113401	94.660	206	3	1	1	206	1	198	2.36e-143	399
Msa0369170	MtrunA17_Chr4g0006731	64.078	206	66	1	1	206	1	198	7.30e-96	280
Msa0369170	MtrunA17_Chr7g0242451	59.709	206	73	2	1	206	1	196	8.20e-89	261
Msa0369170	MtrunA17_Chr7g0242401	59.314	204	73	3	3	206	30	223	4.21e-86	255
Msa0369170	MtrunA17_Chr7g0242431	58.333	204	75	3	3	206	29	222	1.38e-84	251
Msa0369170	MtrunA17_Chr7g0242461	55.340	206	82	2	1	206	1	196	7.37e-82	244
Msa0369170	MtrunA17_Chr7g0242411	56.219	201	74	3	6	206	2	188	2.60e-78	234
Msa0369170	MtrunA17_Chr7g0242391	52.451	204	85	3	6	206	2	196	9.00e-74	223
Msa0369170	MtrunA17_Chr2g0283421	36.019	211	115	5	5	206	4	203	3.30e-37	129
Msa0369170	MtrunA17_Chr2g0283411	35.545	211	116	6	6	206	4	204	3.72e-37	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369170	AT3G11210.1	67.961	206	58	1	1	206	1	198	1.64e-106	306
Msa0369170	AT2G38180.1	57.212	208	75	3	1	206	1	196	4.54e-83	249
Msa0369170	AT5G62930.1	38.424	203	112	3	6	203	2	196	3.26e-48	158
Msa0369170	AT5G62930.2	38.424	203	112	3	6	203	28	222	6.68e-48	158
Msa0369170	AT5G45920.1	39.713	209	107	6	6	206	3	200	8.55e-44	147
Msa0369170	AT5G45920.4	39.713	209	107	6	6	206	3	200	8.55e-44	147
Msa0369170	AT5G45920.2	39.286	196	100	6	6	193	3	187	1.32e-39	134
Msa0369170	AT5G45920.3	39.286	196	100	6	6	193	3	187	1.32e-39	134
Msa0369170	AT5G62930.3	30.556	144	87	2	65	203	3	138	1.38e-21	87.8

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Find 74 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCAAATCAAACATTA+TGG	0.319034	3_1:-66285654	None:intergenic
AAAGATTCTCGTTCATATTC+AGG	0.237645	3_1:+66288046	Msa0369170:CDS
AAATAAACTATGACAAGAGA+AGG	0.569239	3_1:-66287942	None:intergenic
AACATTATGGTTGGTTTGTT+AGG	0.273179	3_1:-66285641	None:intergenic
AAGAAGGAAAAGACCAAAGC+AGG	0.484171	3_1:-66285744	None:intergenic
AAGAGGCATACGTAAGACAG+AGG	0.667582	3_1:-66285770	None:intergenic
AAGTACTTAAGGAGGCTGAT+TGG	0.489555	3_1:+66289644	Msa0369170:three_prime_UTR
ACCAAATCAAACATTATGGT+TGG	0.478218	3_1:-66285650	None:intergenic
ACCAACCATAATGTTTGATT+TGG	0.301962	3_1:+66285649	Msa0369170:five_prime_UTR
ACCAGATGAGTGAGGACCCA+TGG	0.547376	3_1:-66287979	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAACCATAATGTTTGATT+TGG	+	chr3_1:66285649-66285668	Msa0369170:five_prime_UTR	30.0%
ACCAAATCAAACATTATGGT+TGG	-	chr3_1:66285653-66285672	None:intergenic	30.0%
AAGGGTTAAAAAGAAAGAAG+AGG	-	chr3_1:66285790-66285809	None:intergenic	30.0%
AGAATAGATGTCAGAAAGAA+AGG	-	chr3_1:66285949-66285968	None:intergenic	30.0%
GTTTATTTCAAAAAGGCAGA+AGG	-	chr3_1:66286140-66286159	None:intergenic	30.0%
TTGGGCTATGTTTAAGAAAA+TGG	+	chr3_1:66286167-66286186	Msa0369170:intron	30.0%
TGGGCTATGTTTAAGAAAAT+GGG	+	chr3_1:66286168-66286187	Msa0369170:intron	30.0%
GAAAGTAGTAACTAGTAGTA+AGG	+	chr3_1:66286245-66286264	Msa0369170:intron	30.0%
AAAAAATTCACAGTTGGAGT+GGG	-	chr3_1:66286689-66286708	None:intergenic	30.0%
AAAAAAATTCACAGTTGGAG+TGG	-	chr3_1:66286690-66286709	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66285572	66290083	66285572	ID=Msa0369170;Name=Msa0369170
chr3_1	mRNA	66285572	66290083	66285572	ID=Msa0369170-mRNA-1;Parent=Msa0369170;Name=Msa0369170-mRNA-1;_AED=0.18;_eAED=0.18;_QI=292\|0.8\|0.83\|1\|1\|1\|6\|452\|207
chr3_1	exon	66285572	66285974	66285572	ID=Msa0369170-mRNA-1:exon:13448;Parent=Msa0369170-mRNA-1
chr3_1	exon	66287091	66287168	66287091	ID=Msa0369170-mRNA-1:exon:13449;Parent=Msa0369170-mRNA-1
chr3_1	exon	66287927	66288067	66287927	ID=Msa0369170-mRNA-1:exon:13450;Parent=Msa0369170-mRNA-1
chr3_1	exon	66288693	66288793	66288693	ID=Msa0369170-mRNA-1:exon:13451;Parent=Msa0369170-mRNA-1
chr3_1	exon	66288899	66289048	66288899	ID=Msa0369170-mRNA-1:exon:13452;Parent=Msa0369170-mRNA-1
chr3_1	exon	66289589	66290083	66289589	ID=Msa0369170-mRNA-1:exon:13453;Parent=Msa0369170-mRNA-1
chr3_1	five_prime_UTR	66285572	66285863	66285572	ID=Msa0369170-mRNA-1:five_prime_utr;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66285864	66285974	66285864	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66287091	66287168	66287091	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66287927	66288067	66287927	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66288693	66288793	66288693	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66288899	66289048	66288899	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	CDS	66289589	66289631	66289589	ID=Msa0369170-mRNA-1:cds;Parent=Msa0369170-mRNA-1
chr3_1	three_prime_UTR	66289632	66290083	66289632	ID=Msa0369170-mRNA-1:three_prime_utr;Parent=Msa0369170-mRNA-1

Gene Sequence

>Msa0369170

ATGGTTGCACCTGCAAGACCTCAATTTGTTCTCTTCGGATCTTCCATCGTTCAGCTCAGTTACAGCCATAGTGGTTGGGGTTCCTTTCTTTCTGACATCTATTCTCGTAAGGCAGATATATTGTTACGAGGATACTACGGATGGAACTCAAGACGTGCTCTCCAAGTCCTCCATCAAGTTTTCCCAAAGGATGCTGCTACACAGCCTTCTCTTGTCATAGTTTATTTTGGAGGCAATGATTCCATGGGTCCTCACTCATCTGGTCTAGGCCCTCATGTGCCACTTGAAGAATATATCGCAAATATGAGAAAGATTCTCGTTCATATTCAGTTTAATGAGAATATTGAATGCCAGAGCCTCTCTGAAAAGACACGTATCATTGTTCTTAGCTGTCCTCCTGTCCATGAAGAAAAAGTGCGCGGAAACACCAGTGCAATTTTTAGTGAGTTGGTAAGAACAAATGAATTATGCCGAAGCTATTCTGACGCTTGTATAAAGCTATGCAAGGAACTTGGTGTGAAAGTCGTTGATCTTTTTAATGCACTACAAAGTATAGATGATTGGGAGAATGCATGTTTTACTGATGGTATCCATTTAGCAGCTGAGGGAGCAAAATTGTGGTGA

Protein sequence

>Msa0369170

MVAPARPQFVLFGSSIVQLSYSHSGWGSFLSDIYSRKADILLRGYYGWNSRRALQVLHQVFPKDAATQPSLVIVYFGGNDSMGPHSSGLGPHVPLEEYIANMRKILVHIQFNENIECQSLSEKTRIIVLSCPPVHEEKVRGNTSAIFSELVRTNELCRSYSDACIKLCKELGVKVVDLFNALQSIDDWENACFTDGIHLAAEGAKLW*