Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463610 | XP_003600959.1 | 95.850 | 506 | 18 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1000 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463610 | sp|O22806|BUBR1_ARATH | 32.704 | 159 | 102 | 1 | 12 | 170 | 70 | 223 | 2.40e-23 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463610 | G7JBX0 | 95.850 | 506 | 18 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1000 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373170 | Msa0463610 | 0.800666 | 1.295039e-48 | -8.615850e-47 |
| Msa0421750 | Msa0463610 | 0.811119 | 8.212329e-51 | -8.615850e-47 |
| Msa0463610 | Msa0467690 | 0.804486 | 2.111334e-49 | -8.615850e-47 |
| Msa0463610 | Msa0509060 | 0.812146 | 4.910158e-51 | -8.615850e-47 |
| Msa0463610 | Msa0514020 | 0.811053 | 8.484971e-51 | -8.615850e-47 |
| Msa0463610 | Msa0532160 | 0.810021 | 1.417818e-50 | -8.615850e-47 |
| Msa0463610 | Msa0648040 | 0.808035 | 3.774128e-50 | -8.615850e-47 |
| Msa0463610 | Msa0690740 | 0.807966 | 3.903451e-50 | -8.615850e-47 |
| Msa0463610 | Msa0926310 | 0.801188 | 1.013001e-48 | -8.615850e-47 |
| Msa0463610 | Msa1125820 | 0.802032 | 6.800557e-49 | -8.615850e-47 |
| Msa0463610 | Msa1190390 | 0.800672 | 1.291505e-48 | -8.615850e-47 |
| Msa0463610 | Msa1254540 | 0.803104 | 4.088368e-49 | -8.615850e-47 |
| Msa0463610 | Msa1399190 | 0.803270 | 3.775970e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463610 | MtrunA17_Chr3g0113931 | 95.850 | 506 | 18 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1000 |
| Msa0463610 | MtrunA17_Chr1g0162841 | 33.793 | 145 | 95 | 1 | 12 | 155 | 69 | 213 | 3.17e-24 | 104 |
| Msa0463610 | MtrunA17_Chr4g0040351 | 30.612 | 147 | 99 | 2 | 22 | 167 | 18 | 162 | 3.97e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0463610 | AT5G05510.1 | 52.485 | 503 | 191 | 11 | 7 | 503 | 11 | 471 | 5.96e-166 | 478 |
| Msa0463610 | AT2G33560.1 | 32.704 | 159 | 102 | 1 | 12 | 170 | 70 | 223 | 2.44e-24 | 105 |
| Msa0463610 | AT2G33560.2 | 33.333 | 141 | 94 | 0 | 12 | 152 | 70 | 210 | 4.04e-24 | 104 |
| Msa0463610 | AT2G20635.1 | 29.940 | 167 | 116 | 1 | 22 | 187 | 11 | 177 | 2.47e-19 | 91.3 |
Find 117 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGGTTCTGCCATTT+TGG | 0.183726 | 3_3:+63084160 | Msa0463610:CDS |
| CTTGACTTTCCTCGCGATTT+TGG | 0.252912 | 3_3:-63084548 | None:intergenic |
| CACCTTTGGTTCATCCAAAA+TGG | 0.257555 | 3_3:-63084174 | None:intergenic |
| GGTTCTACTTCAAAAGTAAA+TGG | 0.271000 | 3_3:+63084032 | Msa0463610:CDS |
| CTCACTGAACATGCTGTTAA+TGG | 0.285840 | 3_3:-63083799 | None:intergenic |
| ACTATGGAAGTTAATCAAAT+TGG | 0.304117 | 3_3:+63082769 | Msa0463610:CDS |
| TACCTCCTTGTTTCTGTTTG+AGG | 0.315762 | 3_3:-63084391 | None:intergenic |
| TTCTTTCTAACAAAGTCTAT+TGG | 0.317378 | 3_3:-63084281 | None:intergenic |
| TATCCGCACGTTTCTTCCTT+TGG | 0.330156 | 3_3:+63084683 | Msa0463610:three_prime_UTR |
| GCGCATTGTTGCAAGAATTC+AGG | 0.337809 | 3_3:-63082467 | None:intergenic |
| TCGATCGAGCTCGAATGTTT+TGG | 0.341700 | 3_3:-63082489 | None:intergenic |
| GCCATTAGAGACTGTTCCTT+TGG | 0.343407 | 3_3:+63083821 | Msa0463610:CDS |
| ATATTCCTTCTGAGAAATCT+AGG | 0.343624 | 3_3:+63084078 | Msa0463610:CDS |
| CTTCATCGTCAATATATATC+TGG | 0.349742 | 3_3:-63083998 | None:intergenic |
| ATTTACGTTATCTTCGTGTT+TGG | 0.366125 | 3_3:+63082525 | Msa0463610:CDS |
| CTTCCTTTGGAACTAGTTTG+AGG | 0.375126 | 3_3:+63084696 | Msa0463610:three_prime_UTR |
| TCCTTTCCACTGTTGTTCCC+TGG | 0.377586 | 3_3:-63084464 | None:intergenic |
| GCCTCCTTCATATTTATTGT+AGG | 0.380066 | 3_3:-63083768 | None:intergenic |
| CCACCTAAAAGCGGATGAAT+TGG | 0.387411 | 3_3:-63084725 | None:intergenic |
| GGCAGAGAAAATGTATCATA+TGG | 0.390291 | 3_3:+63082858 | Msa0463610:CDS |
| GATGACATAAACAACATGTT+TGG | 0.397182 | 3_3:+63084254 | Msa0463610:CDS |
| CATGCTGTTAATGGCATTCA+TGG | 0.415727 | 3_3:-63083790 | None:intergenic |
| GCTTCCTTCATGTTGATTGT+GGG | 0.415791 | 3_3:-63084227 | None:intergenic |
| CCATTAGAGACTGTTCCTTT+GGG | 0.416475 | 3_3:+63083822 | Msa0463610:CDS |
| AGGGAGAAGAGGGTCTTTGC+CGG | 0.417939 | 3_3:-63082282 | None:intergenic |
| TCCTTTCCGCTATTGTTCTC+CGG | 0.421548 | 3_3:-63084329 | None:intergenic |
| GCTTCCTTTGTGTGAAGAGT+TGG | 0.428380 | 3_3:-63084590 | None:intergenic |
| CCGTTGATTCGATTTCGAAA+TGG | 0.429024 | 3_3:+63082208 | Msa0463610:exon |
| ACAGTTGTTCGTAGATTTGT+TGG | 0.429705 | 3_3:+63084146 | Msa0463610:CDS |
| AAAGAAAAGGTCACTGAAGC+AGG | 0.434502 | 3_3:+63084298 | Msa0463610:CDS |
| CAAGATGTTTAATATGCCTC+TGG | 0.434521 | 3_3:+63084628 | Msa0463610:CDS |
| TGCTTCAGACTTTCCATCCA+TGG | 0.435699 | 3_3:-63083715 | None:intergenic |
| AACAATAGCGGAAAGGAATT+CGG | 0.440662 | 3_3:+63084335 | Msa0463610:CDS |
| ATGACATAAACAACATGTTT+GGG | 0.440880 | 3_3:+63084255 | Msa0463610:CDS |
| GAAGCGCAAGAAGAAAATTC+AGG | 0.448200 | 3_3:+63083474 | Msa0463610:CDS |
| GAGTGCGTTGTTGAGAACTA+TGG | 0.449375 | 3_3:+63082753 | Msa0463610:CDS |
| CCCAAAGGAACAGTCTCTAA+TGG | 0.452871 | 3_3:-63083822 | None:intergenic |
| TGCTTCCTTCATGTTGATTG+TGG | 0.459540 | 3_3:-63084228 | None:intergenic |
| TAGACTTTGTTAGAAAGAAA+AGG | 0.462035 | 3_3:+63084285 | Msa0463610:CDS |
| TTAATCAAATTGGAACTAAA+CGG | 0.467873 | 3_3:+63082779 | Msa0463610:CDS |
| TGAAGTGATACGGAACCGTT+TGG | 0.473170 | 3_3:-63083936 | None:intergenic |
| ATCTGGAGTGATTCTTGTTG+AGG | 0.485091 | 3_3:-63083981 | None:intergenic |
| ACCCTCTTCTCCCTTGGCTC+CGG | 0.490297 | 3_3:+63082291 | Msa0463610:CDS |
| GACAAAGAAAATAAACCAAA+CGG | 0.498275 | 3_3:+63083921 | Msa0463610:CDS |
| TCTTCGTGTTTGGCTCCACT+TGG | 0.500289 | 3_3:+63082535 | Msa0463610:CDS |
| TTGAAGCAGGAGAAAGCACC+AGG | 0.500311 | 3_3:+63084446 | Msa0463610:CDS |
| CGGTTGCCGCGGCGGTGACA+CGG | 0.506314 | 3_3:-63082185 | None:intergenic |
| GCAAAGACCCTCTTCTCCCT+TGG | 0.507877 | 3_3:+63082285 | Msa0463610:CDS |
| TTCTCAGAAGGAATATCCTT+AGG | 0.509770 | 3_3:-63084071 | None:intergenic |
| CTACGCGACTCTTTAAAATG+AGG | 0.512002 | 3_3:-63082134 | None:intergenic |
| GATGAGAGCAAGAAACTTCG+TGG | 0.513854 | 3_3:+63083654 | Msa0463610:CDS |
| CTTCCTTCATGTTGATTGTG+GGG | 0.515427 | 3_3:-63084226 | None:intergenic |
| CATCTTGTTAATGTCATCCA+TGG | 0.515931 | 3_3:-63084612 | None:intergenic |
| AGCTGCTGATAGACGCGTAA+AGG | 0.519448 | 3_3:+63083623 | Msa0463610:CDS |
| AGAGAAGATTACCGGAGCCA+AGG | 0.520415 | 3_3:-63082302 | None:intergenic |
| GATTTCTGCAATTCATCCAC+AGG | 0.525527 | 3_3:-63083427 | None:intergenic |
| GCAGAAAATGCATGCCATCA+TGG | 0.530220 | 3_3:+63083735 | Msa0463610:CDS |
| CAGATATATATTGACGATGA+AGG | 0.536757 | 3_3:+63083999 | Msa0463610:CDS |
| GAGGACGTTGTTTCTGCTCA+AGG | 0.538820 | 3_3:-63084520 | None:intergenic |
| TACCGGAGCCAAGGGAGAAG+AGG | 0.539658 | 3_3:-63082293 | None:intergenic |
| CGAATCAACGGCGGTTGCCG+CGG | 0.541168 | 3_3:-63082196 | None:intergenic |
| ATTCCTATGCTGAAGTGATA+CGG | 0.541284 | 3_3:-63083946 | None:intergenic |
| ATAGTTCTCAACAACGCACT+CGG | 0.542554 | 3_3:-63082751 | None:intergenic |
| GAGAAGATTACCGGAGCCAA+GGG | 0.543631 | 3_3:-63082301 | None:intergenic |
| AGATCCTACAATAAATATGA+AGG | 0.555869 | 3_3:+63083764 | Msa0463610:CDS |
| TTATGTGATTTCTTGCCCAA+AGG | 0.557166 | 3_3:-63083837 | None:intergenic |
| TCACTTCAGCATAGGAATGA+AGG | 0.557945 | 3_3:+63083951 | Msa0463610:CDS |
| AAGAGGGTCTTTGCCGGTGT+AGG | 0.558993 | 3_3:-63082276 | None:intergenic |
| GACGATGAAGGACGTTCAGA+AGG | 0.564852 | 3_3:+63084011 | Msa0463610:CDS |
| GCAGAGAAAATGTATCATAT+GGG | 0.565740 | 3_3:+63082859 | Msa0463610:CDS |
| CAAAATCGCGAGGAAAGTCA+AGG | 0.566136 | 3_3:+63084549 | Msa0463610:CDS |
| TTTGTTGACACTGCCATGGA+TGG | 0.569721 | 3_3:+63083702 | Msa0463610:CDS |
| AAATGCATGCCATCATGGAC+TGG | 0.571438 | 3_3:+63083740 | Msa0463610:CDS |
| ATGTCCCTAGATTTCTCAGA+AGG | 0.572062 | 3_3:-63084083 | None:intergenic |
| ATCAACGGCGGTTGCCGCGG+CGG | 0.575852 | 3_3:-63082193 | None:intergenic |
| TATTCCTTCTGAGAAATCTA+GGG | 0.580372 | 3_3:+63084079 | Msa0463610:CDS |
| TTCTGAGAAATCTAGGGACA+TGG | 0.580654 | 3_3:+63084085 | Msa0463610:CDS |
| CCATTTCGAAATCGAATCAA+CGG | 0.586267 | 3_3:-63082208 | None:intergenic |
| GAAGAGTAAGAATTATGATG+AGG | 0.589498 | 3_3:+63082837 | Msa0463610:CDS |
| TCTTCACACAAAGGAAGCCA+TGG | 0.589915 | 3_3:+63084595 | Msa0463610:CDS |
| GAAGGAATATCCTTAGGTCG+AGG | 0.590145 | 3_3:-63084065 | None:intergenic |
| AATCAACATGAAGGAAGCAA+TGG | 0.596936 | 3_3:+63084232 | Msa0463610:CDS |
| ACCGGAGCCAAGGGAGAAGA+GGG | 0.599523 | 3_3:-63082292 | None:intergenic |
| GTGGAAAATGCTTGTCACCA+CGG | 0.601602 | 3_3:+63084194 | Msa0463610:CDS |
| AAACCTCAAACTAGTTCCAA+AGG | 0.602366 | 3_3:-63084699 | None:intergenic |
| GTTCCGTATCACTTCAGCAT+AGG | 0.604386 | 3_3:+63083943 | Msa0463610:CDS |
| TCAGATATCAACACCTACAC+CGG | 0.608000 | 3_3:+63082263 | Msa0463610:CDS |
| ACCAGGGAACAACAGTGGAA+AGG | 0.609660 | 3_3:+63084463 | Msa0463610:CDS |
| AGACCCCACAATCAACATGA+AGG | 0.609900 | 3_3:+63084223 | Msa0463610:CDS |
| CAAGTTTGTTGACACTGCCA+TGG | 0.611526 | 3_3:+63083698 | Msa0463610:CDS |
| TAGGATCTACCAGTCCATGA+TGG | 0.613842 | 3_3:-63083749 | None:intergenic |
| TAGTTCTCAACAACGCACTC+GGG | 0.615153 | 3_3:-63082750 | None:intergenic |
| AATAGCGGAAAGGAATTCGG+TGG | 0.630479 | 3_3:+63084338 | Msa0463610:CDS |
| AAAGCACCAGGGAACAACAG+TGG | 0.630657 | 3_3:+63084458 | Msa0463610:CDS |
| ATTCATCCACAGGCTCTGCA+AGG | 0.634699 | 3_3:-63083417 | None:intergenic |
| ACTGAAGCAGGAGAATGCAC+CGG | 0.634906 | 3_3:+63084310 | Msa0463610:CDS |
| ATAGCGGAAAGGAATTCGGT+GGG | 0.635695 | 3_3:+63084339 | Msa0463610:CDS |
| TGAGCCAACTCTTCACACAA+AGG | 0.637710 | 3_3:+63084586 | Msa0463610:CDS |
| TCCTACAATAAATATGAAGG+AGG | 0.643183 | 3_3:+63083767 | Msa0463610:CDS |
| GAATAGCCTTGCAGAGCCTG+TGG | 0.649505 | 3_3:+63083411 | Msa0463610:intron |
| ACCGGAGAACAATAGCGGAA+AGG | 0.650433 | 3_3:+63084328 | Msa0463610:CDS |
| AAAATCGCGAGGAAAGTCAA+GGG | 0.666706 | 3_3:+63084550 | Msa0463610:CDS |
| ACAGTGGAAAGGAACTCAGT+GGG | 0.668654 | 3_3:+63084474 | Msa0463610:CDS |
| TCATAATTCAAAGTTCAGAG+AGG | 0.673655 | 3_3:+63084121 | Msa0463610:CDS |
| CTTCAGCATAGGAATGAAGG+TGG | 0.676327 | 3_3:+63083954 | Msa0463610:CDS |
| GATGACCTCAAACAGAAACA+AGG | 0.694687 | 3_3:+63084386 | Msa0463610:CDS |
| AATGCACCGGAGAACAATAG+CGG | 0.695043 | 3_3:+63084323 | Msa0463610:CDS |
| AACAGTGGAAAGGAACTCAG+TGG | 0.696657 | 3_3:+63084473 | Msa0463610:CDS |
| GCACCACCGTGTCACCGCCG+CGG | 0.698393 | 3_3:+63082179 | Msa0463610:five_prime_UTR |
| TTGCCGCGGCGGTGACACGG+TGG | 0.698444 | 3_3:-63082182 | None:intergenic |
| GGTGTTGATATCTGACAATG+AGG | 0.703385 | 3_3:-63082255 | None:intergenic |
| GTTCCAAAGGAAGAAACGTG+CGG | 0.713350 | 3_3:-63084686 | None:intergenic |
| CCTCAACTACCAAAATCGCG+AGG | 0.727209 | 3_3:+63084539 | Msa0463610:CDS |
| GACCTCAAACAGAAACAAGG+AGG | 0.727279 | 3_3:+63084389 | Msa0463610:CDS |
| TTTCGAAATCGAATCAACGG+CGG | 0.733899 | 3_3:-63082205 | None:intergenic |
| TGAAGCAGGAGAAAGCACCA+GGG | 0.751798 | 3_3:+63084447 | Msa0463610:CDS |
| TTGTGGGGTCTACTAAACCG+TGG | 0.816809 | 3_3:-63084211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTCAATTTTTTCAAAAG+GGG | - | chr3_3:63082578-63082597 | None:intergenic | 15.0% |
| !!! | CAAATTCAATTTTTTCAAAA+GGG | - | chr3_3:63082579-63082598 | None:intergenic | 15.0% |
| !! | AAAAAATTGAATTTGCAAAA+TGG | + | chr3_3:63082584-63082603 | Msa0463610:intron | 15.0% |
| !! | AAAAATTGAATTTGCAAAAT+GGG | + | chr3_3:63082585-63082604 | Msa0463610:intron | 15.0% |
| !!! | GCAAATTCAATTTTTTCAAA+AGG | - | chr3_3:63082580-63082599 | None:intergenic | 20.0% |
| !! | AGTATTATTATGTTAGATTC+AGG | + | chr3_3:63082641-63082660 | Msa0463610:intron | 20.0% |
| !! | TTAATCAAATTGGAACTAAA+CGG | + | chr3_3:63082779-63082798 | Msa0463610:CDS | 20.0% |
| !!! | TTCAATTTATTCTAGTGTTT+TGG | + | chr3_3:63082921-63082940 | Msa0463610:intron | 20.0% |
| !! | ATAACAACTTATTCAACAAT+AGG | - | chr3_3:63083134-63083153 | None:intergenic | 20.0% |
| !!! | TTCAACAAGAGAAATTATTT+TGG | - | chr3_3:63083394-63083413 | None:intergenic | 20.0% |
| !! | AATAAATGACAAAAACAACA+TGG | - | chr3_3:63083531-63083550 | None:intergenic | 20.0% |
| !!! | TGTCATTTATTTGTTATTCT+TGG | + | chr3_3:63083540-63083559 | Msa0463610:intron | 20.0% |
| !! | TTAAAATTATCTACACTGAA+TGG | - | chr3_3:63083574-63083593 | None:intergenic | 20.0% |
| !!! | AGTTTTTGTTGATGAAAATT+TGG | + | chr3_3:63083899-63083918 | Msa0463610:CDS | 20.0% |
| ! | ACTATGGAAGTTAATCAAAT+TGG | + | chr3_3:63082769-63082788 | Msa0463610:CDS | 25.0% |
| ! | AACACTAGAATAAATTGAAC+AGG | - | chr3_3:63082920-63082939 | None:intergenic | 25.0% |
| !! | TTGTTTTCAATTTAGCAGAT+TGG | + | chr3_3:63083022-63083041 | Msa0463610:intron | 25.0% |
| ! | AACTTCATTAATCACAAACT+TGG | - | chr3_3:63083260-63083279 | None:intergenic | 25.0% |
| ! | TGTGATTAATGAAGTTATGT+TGG | + | chr3_3:63083264-63083283 | Msa0463610:intron | 25.0% |
| ! | GGTAAATTATGTTCAATATC+AGG | - | chr3_3:63083309-63083328 | None:intergenic | 25.0% |
| ! | TCACGAAAGTTATCTAAATT+TGG | + | chr3_3:63083363-63083382 | Msa0463610:intron | 25.0% |
| !!! | TATTTGTTATTCTTGGTACT+TGG | + | chr3_3:63083547-63083566 | Msa0463610:intron | 25.0% |
| ! | ATAAAATGTCATACAACATC+AGG | + | chr3_3:63083593-63083612 | Msa0463610:intron | 25.0% |
| ! | AGATCCTACAATAAATATGA+AGG | + | chr3_3:63083764-63083783 | Msa0463610:CDS | 25.0% |
| ! | GACAAAGAAAATAAACCAAA+CGG | + | chr3_3:63083921-63083940 | Msa0463610:CDS | 25.0% |
| ! | ATGACATAAACAACATGTTT+GGG | + | chr3_3:63084255-63084274 | Msa0463610:CDS | 25.0% |
| ! | TTCTTTCTAACAAAGTCTAT+TGG | - | chr3_3:63084284-63084303 | None:intergenic | 25.0% |
| ! | TAGACTTTGTTAGAAAGAAA+AGG | + | chr3_3:63084285-63084304 | Msa0463610:CDS | 25.0% |
| ! | GAAAAAAAGATTATTGAAGC+AGG | + | chr3_3:63084433-63084452 | Msa0463610:CDS | 25.0% |
| !! | TTTTCCTTGAGTGTTTTTGA+GGG | - | chr3_3:63082443-63082462 | None:intergenic | 30.0% |
| !! | TTTTTCCTTGAGTGTTTTTG+AGG | - | chr3_3:63082444-63082463 | None:intergenic | 30.0% |
| ATTTACGTTATCTTCGTGTT+TGG | + | chr3_3:63082525-63082544 | Msa0463610:CDS | 30.0% | |
| ATTCTAATTCACTAACCAAG+TGG | - | chr3_3:63082553-63082572 | None:intergenic | 30.0% | |
| !! | TGAATTTGCAAAATGGGTTT+TGG | + | chr3_3:63082591-63082610 | Msa0463610:intron | 30.0% |
| !! | GAATTTGCAAAATGGGTTTT+GGG | + | chr3_3:63082592-63082611 | Msa0463610:intron | 30.0% |
| ! | GATTCAGGAATTTTGTGATT+AGG | + | chr3_3:63082656-63082675 | Msa0463610:intron | 30.0% |
| !!! | GTGATTTTTTTCTGTGTGAT+TGG | + | chr3_3:63082707-63082726 | Msa0463610:intron | 30.0% |
| GAAGAGTAAGAATTATGATG+AGG | + | chr3_3:63082837-63082856 | Msa0463610:CDS | 30.0% | |
| GCAGAGAAAATGTATCATAT+GGG | + | chr3_3:63082859-63082878 | Msa0463610:CDS | 30.0% | |
| AGCAAAATCCAATCAACATT+CGG | - | chr3_3:63082984-63083003 | None:intergenic | 30.0% | |
| ! | ATTGGATTTTGCTTGAAACT+TGG | + | chr3_3:63082991-63083010 | Msa0463610:intron | 30.0% |
| ATTAACCACCAATTACATGT+AGG | - | chr3_3:63083190-63083209 | None:intergenic | 30.0% | |
| ! | ACATGTAATTGGTGGTTAAT+CGG | + | chr3_3:63083190-63083209 | Msa0463610:intron | 30.0% |
| ATTAATCACAAACTTGGACA+TGG | - | chr3_3:63083254-63083273 | None:intergenic | 30.0% | |
| !! | TTTCGTGACAACTTTTTAAG+TGG | - | chr3_3:63083351-63083370 | None:intergenic | 30.0% |
| TCCTACAATAAATATGAAGG+AGG | + | chr3_3:63083767-63083786 | Msa0463610:CDS | 30.0% | |
| CTTCATCGTCAATATATATC+TGG | - | chr3_3:63084001-63084020 | None:intergenic | 30.0% | |
| CAGATATATATTGACGATGA+AGG | + | chr3_3:63083999-63084018 | Msa0463610:CDS | 30.0% | |
| GGTTCTACTTCAAAAGTAAA+TGG | + | chr3_3:63084032-63084051 | Msa0463610:CDS | 30.0% | |
| ! | ATATTCCTTCTGAGAAATCT+AGG | + | chr3_3:63084078-63084097 | Msa0463610:CDS | 30.0% |
| ! | TATTCCTTCTGAGAAATCTA+GGG | + | chr3_3:63084079-63084098 | Msa0463610:CDS | 30.0% |
| TCATAATTCAAAGTTCAGAG+AGG | + | chr3_3:63084121-63084140 | Msa0463610:CDS | 30.0% | |
| GATGACATAAACAACATGTT+TGG | + | chr3_3:63084254-63084273 | Msa0463610:CDS | 30.0% | |
| ! | TTTTTCCGAGCAAAATCTAT+TGG | - | chr3_3:63084419-63084438 | None:intergenic | 30.0% |
| ! | TAATATGCCTCTGGATTTTT+AGG | + | chr3_3:63084637-63084656 | Msa0463610:CDS | 30.0% |
| !! | TTAGGAACAAAGTGTTTTTG+TGG | + | chr3_3:63084655-63084674 | Msa0463610:exon | 30.0% |
| TGAAAAAATCCACCTAAAAG+CGG | - | chr3_3:63084737-63084756 | None:intergenic | 30.0% | |
| CCATTTCGAAATCGAATCAA+CGG | - | chr3_3:63082211-63082230 | None:intergenic | 35.0% | |
| CAGAGGAATCAAAAAGATGA+AGG | + | chr3_3:63082409-63082428 | Msa0463610:intron | 35.0% | |
| !! | TTGTGATTAGGTTGAAGCAA+AGG | + | chr3_3:63082668-63082687 | Msa0463610:intron | 35.0% |
| !! | TGTGATTAGGTTGAAGCAAA+GGG | + | chr3_3:63082669-63082688 | Msa0463610:intron | 35.0% |
| ! | TTTTCTGTGTGATTGGTAGA+TGG | + | chr3_3:63082714-63082733 | Msa0463610:intron | 35.0% |
| GGCAGAGAAAATGTATCATA+TGG | + | chr3_3:63082858-63082877 | Msa0463610:CDS | 35.0% | |
| !!! | GTGTTTTGGTGCTTGTTTTT+AGG | + | chr3_3:63082935-63082954 | Msa0463610:intron | 35.0% |
| !!! | GGTGCTTGTTTTTAGGAAAT+AGG | + | chr3_3:63082942-63082961 | Msa0463610:intron | 35.0% |
| !! | AACATGACTTGTGTGGATTT+TGG | - | chr3_3:63083102-63083121 | None:intergenic | 35.0% |
| CTTATTCAACAATAGGAGCA+AGG | - | chr3_3:63083127-63083146 | None:intergenic | 35.0% | |
| GCCTCCTTCATATTTATTGT+AGG | - | chr3_3:63083771-63083790 | None:intergenic | 35.0% | |
| TTATGTGATTTCTTGCCCAA+AGG | - | chr3_3:63083840-63083859 | None:intergenic | 35.0% | |
| ATTCCTATGCTGAAGTGATA+CGG | - | chr3_3:63083949-63083968 | None:intergenic | 35.0% | |
| TTCTCAGAAGGAATATCCTT+AGG | - | chr3_3:63084074-63084093 | None:intergenic | 35.0% | |
| ACAGTTGTTCGTAGATTTGT+TGG | + | chr3_3:63084146-63084165 | Msa0463610:CDS | 35.0% | |
| !!! | ATTTGTTGGTTCTGCCATTT+TGG | + | chr3_3:63084160-63084179 | Msa0463610:CDS | 35.0% |
| AATCAACATGAAGGAAGCAA+TGG | + | chr3_3:63084232-63084251 | Msa0463610:CDS | 35.0% | |
| ! | AACAATAGCGGAAAGGAATT+CGG | + | chr3_3:63084335-63084354 | Msa0463610:CDS | 35.0% |
| ! | GTAAGCCAATAGATTTTGCT+CGG | + | chr3_3:63084411-63084430 | Msa0463610:CDS | 35.0% |
| CATCTTGTTAATGTCATCCA+TGG | - | chr3_3:63084615-63084634 | None:intergenic | 35.0% | |
| CAAGATGTTTAATATGCCTC+TGG | + | chr3_3:63084628-63084647 | Msa0463610:CDS | 35.0% | |
| CTTTGTTCCTAAAAATCCAG+AGG | - | chr3_3:63084647-63084666 | None:intergenic | 35.0% | |
| AAACCTCAAACTAGTTCCAA+AGG | - | chr3_3:63084702-63084721 | None:intergenic | 35.0% | |
| !! | CTACGCGACTCTTTAAAATG+AGG | - | chr3_3:63082137-63082156 | None:intergenic | 40.0% |
| !! | CTCATTTTAAAGAGTCGCGT+AGG | + | chr3_3:63082135-63082154 | Msa0463610:five_prime_UTR | 40.0% |
| TTTCGAAATCGAATCAACGG+CGG | - | chr3_3:63082208-63082227 | None:intergenic | 40.0% | |
| !! | CCGTTGATTCGATTTCGAAA+TGG | + | chr3_3:63082208-63082227 | Msa0463610:exon | 40.0% |
| !! | GGTGTTGATATCTGACAATG+AGG | - | chr3_3:63082258-63082277 | None:intergenic | 40.0% |
| TCAGATATCAACACCTACAC+CGG | + | chr3_3:63082263-63082282 | Msa0463610:CDS | 40.0% | |
| AGAGAGAGAGAGAAGATTAC+CGG | - | chr3_3:63082313-63082332 | None:intergenic | 40.0% | |
| ATTCATTTCGAACACTGCAG+AGG | + | chr3_3:63082392-63082411 | Msa0463610:intron | 40.0% | |
| TCTTCCCTCAAAAACACTCA+AGG | + | chr3_3:63082436-63082455 | Msa0463610:CDS | 40.0% | |
| ATAGTTCTCAACAACGCACT+CGG | - | chr3_3:63082754-63082773 | None:intergenic | 40.0% | |
| ! | CAAGGTAAACATGACTTGTG+TGG | - | chr3_3:63083109-63083128 | None:intergenic | 40.0% |
| AGTCACCACCTACATGTAAT+TGG | + | chr3_3:63083179-63083198 | Msa0463610:intron | 40.0% | |
| AACCACCAATTACATGTAGG+TGG | - | chr3_3:63083187-63083206 | None:intergenic | 40.0% | |
| GGTTAATGCAGTTCAGATAG+AGG | - | chr3_3:63083330-63083349 | None:intergenic | 40.0% | |
| GATTTCTGCAATTCATCCAC+AGG | - | chr3_3:63083430-63083449 | None:intergenic | 40.0% | |
| GAAGCGCAAGAAGAAAATTC+AGG | + | chr3_3:63083474-63083493 | Msa0463610:CDS | 40.0% | |
| CAACATGGATCGACAGATAA+AGG | - | chr3_3:63083516-63083535 | None:intergenic | 40.0% | |
| CATGCTGTTAATGGCATTCA+TGG | - | chr3_3:63083793-63083812 | None:intergenic | 40.0% | |
| CTCACTGAACATGCTGTTAA+TGG | - | chr3_3:63083802-63083821 | None:intergenic | 40.0% | |
| CCATTAGAGACTGTTCCTTT+GGG | + | chr3_3:63083822-63083841 | Msa0463610:CDS | 40.0% | |
| TCACTTCAGCATAGGAATGA+AGG | + | chr3_3:63083951-63083970 | Msa0463610:CDS | 40.0% | |
| ! | ATCTGGAGTGATTCTTGTTG+AGG | - | chr3_3:63083984-63084003 | None:intergenic | 40.0% |
| !!! | CTTTGTTTTTCCTCGACCTA+AGG | + | chr3_3:63084055-63084074 | Msa0463610:CDS | 40.0% |
| ATGTCCCTAGATTTCTCAGA+AGG | - | chr3_3:63084086-63084105 | None:intergenic | 40.0% | |
| ! | TTCTGAGAAATCTAGGGACA+TGG | + | chr3_3:63084085-63084104 | Msa0463610:CDS | 40.0% |
| !!! | TGCCATTTTGGATGAACCAA+AGG | + | chr3_3:63084172-63084191 | Msa0463610:CDS | 40.0% |
| ! | CACCTTTGGTTCATCCAAAA+TGG | - | chr3_3:63084177-63084196 | None:intergenic | 40.0% |
| ! | CATTTTGGATGAACCAAAGG+TGG | + | chr3_3:63084175-63084194 | Msa0463610:CDS | 40.0% |
| ! | TGACAAGCATTTTCCACCTT+TGG | - | chr3_3:63084191-63084210 | None:intergenic | 40.0% |
| ! | CTTCCTTCATGTTGATTGTG+GGG | - | chr3_3:63084229-63084248 | None:intergenic | 40.0% |
| ! | GCTTCCTTCATGTTGATTGT+GGG | - | chr3_3:63084230-63084249 | None:intergenic | 40.0% |
| ! | TGCTTCCTTCATGTTGATTG+TGG | - | chr3_3:63084231-63084250 | None:intergenic | 40.0% |
| AAAGAAAAGGTCACTGAAGC+AGG | + | chr3_3:63084298-63084317 | Msa0463610:CDS | 40.0% | |
| GATGACCTCAAACAGAAACA+AGG | + | chr3_3:63084386-63084405 | Msa0463610:CDS | 40.0% | |
| !! | TACCTCCTTGTTTCTGTTTG+AGG | - | chr3_3:63084394-63084413 | None:intergenic | 40.0% |
| AAAATCGCGAGGAAAGTCAA+GGG | + | chr3_3:63084550-63084569 | Msa0463610:CDS | 40.0% | |
| !! | CTTCCTTTGGAACTAGTTTG+AGG | + | chr3_3:63084696-63084715 | Msa0463610:three_prime_UTR | 40.0% |
| !! | GTACCAATTCATCCGCTTTT+AGG | + | chr3_3:63084722-63084741 | Msa0463610:three_prime_UTR | 40.0% |
| GCGCATTGTTGCAAGAATTC+AGG | - | chr3_3:63082470-63082489 | None:intergenic | 45.0% | |
| ! | TCGATCGAGCTCGAATGTTT+TGG | - | chr3_3:63082492-63082511 | None:intergenic | 45.0% |
| TAGTTCTCAACAACGCACTC+GGG | - | chr3_3:63082753-63082772 | None:intergenic | 45.0% | |
| GAGTGCGTTGTTGAGAACTA+TGG | + | chr3_3:63082753-63082772 | Msa0463610:CDS | 45.0% | |
| AACTTGCGCCGAATGTTGAT+TGG | + | chr3_3:63082973-63082992 | Msa0463610:intron | 45.0% | |
| CACCACCTACATGTAATTGG+TGG | + | chr3_3:63083182-63083201 | Msa0463610:intron | 45.0% | |
| GATGAGAGCAAGAAACTTCG+TGG | + | chr3_3:63083654-63083673 | Msa0463610:CDS | 45.0% | |
| !! | CAAGTTTGTTGACACTGCCA+TGG | + | chr3_3:63083698-63083717 | Msa0463610:CDS | 45.0% |
| TTTGTTGACACTGCCATGGA+TGG | + | chr3_3:63083702-63083721 | Msa0463610:CDS | 45.0% | |
| TGCTTCAGACTTTCCATCCA+TGG | - | chr3_3:63083718-63083737 | None:intergenic | 45.0% | |
| GCAGAAAATGCATGCCATCA+TGG | + | chr3_3:63083735-63083754 | Msa0463610:CDS | 45.0% | |
| AAATGCATGCCATCATGGAC+TGG | + | chr3_3:63083740-63083759 | Msa0463610:CDS | 45.0% | |
| TAGGATCTACCAGTCCATGA+TGG | - | chr3_3:63083752-63083771 | None:intergenic | 45.0% | |
| GCCATTAGAGACTGTTCCTT+TGG | + | chr3_3:63083821-63083840 | Msa0463610:CDS | 45.0% | |
| CCCAAAGGAACAGTCTCTAA+TGG | - | chr3_3:63083825-63083844 | None:intergenic | 45.0% | |
| TGAAGTGATACGGAACCGTT+TGG | - | chr3_3:63083939-63083958 | None:intergenic | 45.0% | |
| GTTCCGTATCACTTCAGCAT+AGG | + | chr3_3:63083943-63083962 | Msa0463610:CDS | 45.0% | |
| CTTCAGCATAGGAATGAAGG+TGG | + | chr3_3:63083954-63083973 | Msa0463610:CDS | 45.0% | |
| GAAGGAATATCCTTAGGTCG+AGG | - | chr3_3:63084068-63084087 | None:intergenic | 45.0% | |
| GTGGAAAATGCTTGTCACCA+CGG | + | chr3_3:63084194-63084213 | Msa0463610:CDS | 45.0% | |
| AGACCCCACAATCAACATGA+AGG | + | chr3_3:63084223-63084242 | Msa0463610:CDS | 45.0% | |
| AATGCACCGGAGAACAATAG+CGG | + | chr3_3:63084323-63084342 | Msa0463610:CDS | 45.0% | |
| TCCTTTCCGCTATTGTTCTC+CGG | - | chr3_3:63084332-63084351 | None:intergenic | 45.0% | |
| ! | AATAGCGGAAAGGAATTCGG+TGG | + | chr3_3:63084338-63084357 | Msa0463610:CDS | 45.0% |
| ! | ATAGCGGAAAGGAATTCGGT+GGG | + | chr3_3:63084339-63084358 | Msa0463610:CDS | 45.0% |
| GGTCATCATCATCATCAGCA+AGG | - | chr3_3:63084373-63084392 | None:intergenic | 45.0% | |
| GACCTCAAACAGAAACAAGG+AGG | + | chr3_3:63084389-63084408 | Msa0463610:CDS | 45.0% | |
| AACAGTGGAAAGGAACTCAG+TGG | + | chr3_3:63084473-63084492 | Msa0463610:CDS | 45.0% | |
| ACAGTGGAAAGGAACTCAGT+GGG | + | chr3_3:63084474-63084493 | Msa0463610:CDS | 45.0% | |
| !! | CAGTGGGTTTTCGATACTTG+CGG | + | chr3_3:63084490-63084509 | Msa0463610:CDS | 45.0% |
| ! | CTTGACTTTCCTCGCGATTT+TGG | - | chr3_3:63084551-63084570 | None:intergenic | 45.0% |
| CAAAATCGCGAGGAAAGTCA+AGG | + | chr3_3:63084549-63084568 | Msa0463610:CDS | 45.0% | |
| TGAGCCAACTCTTCACACAA+AGG | + | chr3_3:63084586-63084605 | Msa0463610:CDS | 45.0% | |
| GCTTCCTTTGTGTGAAGAGT+TGG | - | chr3_3:63084593-63084612 | None:intergenic | 45.0% | |
| TCTTCACACAAAGGAAGCCA+TGG | + | chr3_3:63084595-63084614 | Msa0463610:CDS | 45.0% | |
| TATCCGCACGTTTCTTCCTT+TGG | + | chr3_3:63084683-63084702 | Msa0463610:three_prime_UTR | 45.0% | |
| GTTCCAAAGGAAGAAACGTG+CGG | - | chr3_3:63084689-63084708 | None:intergenic | 45.0% | |
| CCACCTAAAAGCGGATGAAT+TGG | - | chr3_3:63084728-63084747 | None:intergenic | 45.0% | |
| !! | CCAATTCATCCGCTTTTAGG+TGG | + | chr3_3:63084725-63084744 | Msa0463610:three_prime_UTR | 45.0% |
| GAGAAGATTACCGGAGCCAA+GGG | - | chr3_3:63082304-63082323 | None:intergenic | 50.0% | |
| AGAGAAGATTACCGGAGCCA+AGG | - | chr3_3:63082305-63082324 | None:intergenic | 50.0% | |
| ! | TCTTCGTGTTTGGCTCCACT+TGG | + | chr3_3:63082535-63082554 | Msa0463610:CDS | 50.0% |
| ATTCATCCACAGGCTCTGCA+AGG | - | chr3_3:63083420-63083439 | None:intergenic | 50.0% | |
| AGCTGCTGATAGACGCGTAA+AGG | + | chr3_3:63083623-63083642 | Msa0463610:CDS | 50.0% | |
| GACGATGAAGGACGTTCAGA+AGG | + | chr3_3:63084011-63084030 | Msa0463610:CDS | 50.0% | |
| TTGTGGGGTCTACTAAACCG+TGG | - | chr3_3:63084214-63084233 | None:intergenic | 50.0% | |
| ACTGAAGCAGGAGAATGCAC+CGG | + | chr3_3:63084310-63084329 | Msa0463610:CDS | 50.0% | |
| ! | ACCGGAGAACAATAGCGGAA+AGG | + | chr3_3:63084328-63084347 | Msa0463610:CDS | 50.0% |
| !! | TTGAAGCAGGAGAAAGCACC+AGG | + | chr3_3:63084446-63084465 | Msa0463610:CDS | 50.0% |
| !! | TGAAGCAGGAGAAAGCACCA+GGG | + | chr3_3:63084447-63084466 | Msa0463610:CDS | 50.0% |
| ! | AAAGCACCAGGGAACAACAG+TGG | + | chr3_3:63084458-63084477 | Msa0463610:CDS | 50.0% |
| ACCAGGGAACAACAGTGGAA+AGG | + | chr3_3:63084463-63084482 | Msa0463610:CDS | 50.0% | |
| TCCTTTCCACTGTTGTTCCC+TGG | - | chr3_3:63084467-63084486 | None:intergenic | 50.0% | |
| !! | GAGGACGTTGTTTCTGCTCA+AGG | - | chr3_3:63084523-63084542 | None:intergenic | 50.0% |
| !! | CCTCGCGATTTTGGTAGTTG+AGG | - | chr3_3:63084542-63084561 | None:intergenic | 50.0% |
| CCTCAACTACCAAAATCGCG+AGG | + | chr3_3:63084539-63084558 | Msa0463610:CDS | 50.0% | |
| AAGAGGGTCTTTGCCGGTGT+AGG | - | chr3_3:63082279-63082298 | None:intergenic | 55.0% | |
| AGGGAGAAGAGGGTCTTTGC+CGG | - | chr3_3:63082285-63082304 | None:intergenic | 55.0% | |
| GCAAAGACCCTCTTCTCCCT+TGG | + | chr3_3:63082285-63082304 | Msa0463610:CDS | 55.0% | |
| ! | GAATAGCCTTGCAGAGCCTG+TGG | + | chr3_3:63083411-63083430 | Msa0463610:intron | 55.0% |
| ACCCTCTTCTCCCTTGGCTC+CGG | + | chr3_3:63082291-63082310 | Msa0463610:CDS | 60.0% | |
| ACCGGAGCCAAGGGAGAAGA+GGG | - | chr3_3:63082295-63082314 | None:intergenic | 60.0% | |
| TACCGGAGCCAAGGGAGAAG+AGG | - | chr3_3:63082296-63082315 | None:intergenic | 60.0% | |
| CGAATCAACGGCGGTTGCCG+CGG | - | chr3_3:63082199-63082218 | None:intergenic | 65.0% | |
| ATCAACGGCGGTTGCCGCGG+CGG | - | chr3_3:63082196-63082215 | None:intergenic | 70.0% | |
| GCACCACCGTGTCACCGCCG+CGG | + | chr3_3:63082179-63082198 | Msa0463610:five_prime_UTR | 75.0% | |
| TTGCCGCGGCGGTGACACGG+TGG | - | chr3_3:63082185-63082204 | None:intergenic | 75.0% | |
| CGGTTGCCGCGGCGGTGACA+CGG | - | chr3_3:63082188-63082207 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 63082111 | 63084756 | 63082111 | ID=Msa0463610;Name=Msa0463610 |
| chr3_3 | mRNA | 63082111 | 63084756 | 63082111 | ID=Msa0463610-mRNA-1;Parent=Msa0463610;Name=Msa0463610-mRNA-1;_AED=0.03;_eAED=0.03;_QI=116|1|1|1|1|1|5|98|503 |
| chr3_3 | exon | 63082111 | 63082312 | 63082111 | ID=Msa0463610-mRNA-1:exon:13619;Parent=Msa0463610-mRNA-1 |
| chr3_3 | exon | 63082412 | 63082556 | 63082412 | ID=Msa0463610-mRNA-1:exon:13620;Parent=Msa0463610-mRNA-1 |
| chr3_3 | exon | 63082733 | 63082890 | 63082733 | ID=Msa0463610-mRNA-1:exon:13621;Parent=Msa0463610-mRNA-1 |
| chr3_3 | exon | 63083417 | 63083495 | 63083417 | ID=Msa0463610-mRNA-1:exon:13622;Parent=Msa0463610-mRNA-1 |
| chr3_3 | exon | 63083615 | 63084756 | 63083615 | ID=Msa0463610-mRNA-1:exon:13623;Parent=Msa0463610-mRNA-1 |
| chr3_3 | five_prime_UTR | 63082111 | 63082226 | 63082111 | ID=Msa0463610-mRNA-1:five_prime_utr;Parent=Msa0463610-mRNA-1 |
| chr3_3 | CDS | 63082227 | 63082312 | 63082227 | ID=Msa0463610-mRNA-1:cds;Parent=Msa0463610-mRNA-1 |
| chr3_3 | CDS | 63082412 | 63082556 | 63082412 | ID=Msa0463610-mRNA-1:cds;Parent=Msa0463610-mRNA-1 |
| chr3_3 | CDS | 63082733 | 63082890 | 63082733 | ID=Msa0463610-mRNA-1:cds;Parent=Msa0463610-mRNA-1 |
| chr3_3 | CDS | 63083417 | 63083495 | 63083417 | ID=Msa0463610-mRNA-1:cds;Parent=Msa0463610-mRNA-1 |
| chr3_3 | CDS | 63083615 | 63084658 | 63083615 | ID=Msa0463610-mRNA-1:cds;Parent=Msa0463610-mRNA-1 |
| chr3_3 | three_prime_UTR | 63084659 | 63084756 | 63084659 | ID=Msa0463610-mRNA-1:three_prime_utr;Parent=Msa0463610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
