AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254540 MtrunA17_Chr8g0371521 99.374 479 3 0 1 479 1 479 0.0 988
Msa1254540 MtrunA17_Chr7g0237581 58.848 243 95 2 24 265 11 249 1.15e-96 293
Msa1254540 MtrunA17_Chr2g0292681 56.420 257 106 3 13 265 25 279 1.38e-93 296
Msa1254540 MtrunA17_Chr7g0237621 58.051 236 95 1 32 267 32 263 1.18e-92 283
Msa1254540 MtrunA17_Chr2g0292671 50.932 161 78 1 105 265 2 161 1.76e-50 170
Msa1254540 MtrunA17_Chr2g0292661 64.615 65 23 0 27 91 39 103 3.70e-23 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254540 AT3G51280.1 67.312 465 109 7 12 476 6 427 0.0 603
Msa1254540 AT5G48850.1 65.842 202 69 0 34 235 25 226 8.08e-94 286
Msa1254540 AT1G04770.1 60.435 230 86 3 35 263 19 244 1.09e-91 281
Msa1254540 AT4G20900.2 50.549 273 121 2 8 266 9 281 1.77e-89 280
Msa1254540 AT4G20900.1 47.751 289 121 3 8 266 9 297 3.11e-85 270
Msa1254540 AT5G44330.1 50.649 231 109 2 34 264 46 271 1.94e-69 229
Msa1254540 AT5G22794.2 58.209 67 28 0 113 179 71 137 2.79e-18 84.3
Msa1254540 AT5G22794.1 50.746 67 26 1 113 179 71 130 4.62e-12 65.5

Find 113 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGATATTATGGGTTTAT+TGG 0.116432 8_2:+52645990 Msa1254540:three_prime_UTR
TTATGAATAAATTGATATTA+TGG 0.166982 8_2:+52645981 Msa1254540:three_prime_UTR
TGCTATTCTTGCTGCTGTTT+TGG 0.178483 8_2:+52645615 Msa1254540:CDS
AGAGAGCAATTCCGTTGTTT+TGG 0.210595 8_2:+52643738 Msa1254540:CDS
AATGAAAATGCTGCTACTTC+TGG 0.215619 8_2:+52645658 Msa1254540:CDS
GGAATGCTCCTCCAGGTTTC+AGG 0.230621 8_2:+52643443 Msa1254540:CDS
ATAAATCAATTAGACAATTA+AGG 0.235046 8_2:-52645906 None:intergenic
AGGAGTAGCCATCTGCATTT+TGG 0.244447 8_2:+52645878 Msa1254540:three_prime_UTR
ACAGCAATTCAAGATGAATT+TGG 0.253422 8_2:+52645256 Msa1254540:CDS
GATGATTTCGCTGCATAAAA+TGG 0.277779 8_2:-52645385 None:intergenic
AGGAAATTAAGTTAAATAAA+TGG 0.286808 8_2:-52645823 None:intergenic
CATTTGCTGTGCTCTTTCAT+AGG 0.288854 8_2:-52645074 None:intergenic
TAACTGCAGGTTTGACTCTA+TGG 0.294689 8_2:-52645015 None:intergenic
TATGAATAAATTGATATTAT+GGG 0.304186 8_2:+52645982 Msa1254540:three_prime_UTR
AACAACAAGATGTGCAATTT+AGG 0.318920 8_2:+52644944 Msa1254540:CDS
TGATTTGTTGCCTGATACTA+AGG 0.323363 8_2:+52645582 Msa1254540:CDS
AAATGATTCAGAACGAGTTC+TGG 0.326927 8_2:-52643512 None:intergenic
TTCTTGGTTCTTCATCAATC+TGG 0.332090 8_2:+52645173 Msa1254540:CDS
TCCTCCTCTGTTCATCATTT+CGG 0.336439 8_2:-52645113 None:intergenic
GCATTGCAATAGAAAGGATT+TGG 0.341199 8_2:-52646015 None:intergenic
TGTGCCTCAATAGAGCAATT+TGG 0.359571 8_2:-52644282 None:intergenic
AGTCAATTAACTTAAGCCTT+TGG 0.361559 8_2:-52645748 None:intergenic
TTATGATCAGTTGGTGGATA+AGG 0.365272 8_2:+52643709 Msa1254540:intron
ACAAAACAAGTTTACTCCTT+TGG 0.369430 8_2:+52645333 Msa1254540:CDS
CATTGAAAGCCAACCCTTGT+TGG 0.369825 8_2:-52644318 None:intergenic
GTTTCAAGTCTCAGTGGAAC+AGG 0.373627 8_2:+52644378 Msa1254540:CDS
ACAGGAAGCCACTAGATTAT+TGG 0.376288 8_2:+52644396 Msa1254540:CDS
TCTTCAAAGTCCTTAGTATC+AGG 0.383303 8_2:-52645592 None:intergenic
ATAACATCATAGTGTTAGAT+TGG 0.391620 8_2:+52645785 Msa1254540:three_prime_UTR
ATCCCTTGATAATATTCTCT+TGG 0.392842 8_2:+52643898 Msa1254540:CDS
TAAATCAATTAGACAATTAA+GGG 0.396410 8_2:-52645905 None:intergenic
TTGCACATCTTGTTGTTGTC+TGG 0.396722 8_2:-52644938 None:intergenic
AACAAGGTGAATGTGGAATT+AGG 0.398538 8_2:+52645508 Msa1254540:CDS
ATGAAAATGCTGCTACTTCT+GGG 0.406115 8_2:+52645659 Msa1254540:CDS
AATTGACAAGAGGAGGCTTA+AGG 0.406569 8_2:+52645696 Msa1254540:CDS
CAACAAGGGTTGGCTTTCAA+TGG 0.407357 8_2:+52644319 Msa1254540:CDS
GCTGTTGATGTTGTTCTCAT+TGG 0.412634 8_2:-52645238 None:intergenic
AGCCTTCTTGCTTTGTTCCC+AGG 0.413071 8_2:-52645535 None:intergenic
TGCAGCGAAATCATCTTTCA+AGG 0.414771 8_2:+52645393 Msa1254540:CDS
GATTTGGAGGGCCTGAAACC+TGG 0.423814 8_2:-52643454 None:intergenic
GTCAATGTGCCTTGTTTACA+AGG 0.424222 8_2:-52645958 None:intergenic
TGTTATGAAGCAACAGAATA+GGG 0.426367 8_2:+52643814 Msa1254540:CDS
AGGTGAAGAAGGTGCTGATT+TGG 0.430455 8_2:-52643470 None:intergenic
CCTTTCTATTGCAATGCAAA+AGG 0.431000 8_2:+52646021 Msa1254540:three_prime_UTR
TTGTTATGAAGCAACAGAAT+AGG 0.435114 8_2:+52643813 Msa1254540:CDS
ATCATTTCACATCACTCATA+AGG 0.435859 8_2:+52643528 Msa1254540:CDS
GGATAGTGCTTTGAAAGATA+TGG 0.439771 8_2:+52643787 Msa1254540:CDS
ATTTCCTGTATGCTACACTA+TGG 0.444205 8_2:+52645839 Msa1254540:three_prime_UTR
CTGGCAACCTCAGCCTTGTA+AGG 0.454869 8_2:+52645192 Msa1254540:CDS
AGACTTAAGAGAACAAGGTC+TGG 0.456656 8_2:+52645445 Msa1254540:CDS
CTTGGTCCATCTGTAACTGC+AGG 0.464222 8_2:-52645028 None:intergenic
TCTTCACCTGCAAAACCTCT+TGG 0.468666 8_2:+52643484 Msa1254540:CDS
ATGACCAAATTGCTCTATTG+AGG 0.491243 8_2:+52644278 Msa1254540:CDS
TGTTTAATGAAGGGAAACTT+AGG 0.491546 8_2:+52644845 Msa1254540:intron
AGATGAGAATCTGAGCCTCT+TGG 0.492459 8_2:-52645046 None:intergenic
GATCCAAGAGAATATTATCA+AGG 0.493677 8_2:-52643901 None:intergenic
AATGTGGAATTAGGTGTGCC+TGG 0.493922 8_2:+52645517 Msa1254540:CDS
TATCAAGGGATTCTTGTGCT+TGG 0.496201 8_2:-52643886 None:intergenic
TACATTATCTTTGAGTCCAA+AGG 0.496791 8_2:+52645732 Msa1254540:CDS
ACATAAGGAGTATCACCAAC+AGG 0.497457 8_2:-52643553 None:intergenic
GTTGATGTTGTTCTCATTGG+CGG 0.500581 8_2:-52645235 None:intergenic
GTGTGAATGTTATCCTTACA+AGG 0.508378 8_2:-52645205 None:intergenic
ACAAGGTCTGGAAATGCTGC+AGG 0.523586 8_2:+52645457 Msa1254540:CDS
AACAACGGAATTGCTCTCTC+CGG 0.528144 8_2:-52643734 None:intergenic
TGCCTTGTTTACAAGGTACA+AGG 0.529107 8_2:-52645951 None:intergenic
TCAGTTGGTGGATAAGGATC+CGG 0.533131 8_2:+52643715 Msa1254540:intron
TAATGAAGGGAAACTTAGGA+TGG 0.537638 8_2:+52644849 Msa1254540:intron
TGAAGAAGGTGCTGATTTGG+AGG 0.538531 8_2:-52643467 None:intergenic
TGTTAGATTGGAGATGAGCT+TGG 0.540000 8_2:+52645797 Msa1254540:three_prime_UTR
ACTGCCATAGTGTAGCATAC+AGG 0.544952 8_2:-52645843 None:intergenic
TGAACAGAGGAGGAGTGGAC+AGG 0.547527 8_2:+52645122 Msa1254540:CDS
GTATTTAATCCAACAAGGGT+TGG 0.547709 8_2:+52644309 Msa1254540:CDS
GAGATGTGGAATGCTCCTCC+AGG 0.548444 8_2:+52643436 Msa1254540:CDS
ACAAAGACTGCTAGATCTCA+AGG 0.550806 8_2:+52644349 Msa1254540:CDS
CTGAGAGACTTAAGAGAACA+AGG 0.551011 8_2:+52645440 Msa1254540:CDS
TGCCTTGTACCTTGTAAACA+AGG 0.556187 8_2:+52645949 Msa1254540:three_prime_UTR
ATGTTATCCTTACAAGGCTG+AGG 0.558507 8_2:-52645199 None:intergenic
TATTCTCTTGGATCTATACA+AGG 0.569966 8_2:+52643910 Msa1254540:CDS
CAACAATGATGCAAGAGATG+TGG 0.570388 8_2:+52643422 Msa1254540:exon
GTCAAACCTGCAGTTACAGA+TGG 0.578477 8_2:+52645022 Msa1254540:CDS
GGCATTTGTTTGATGAAACA+AGG 0.580903 8_2:+52644965 Msa1254540:CDS
ATCCAAGAGAATATTATCAA+GGG 0.583006 8_2:-52643900 None:intergenic
GATAAATGCGGGAGATAGAG+TGG 0.583477 8_2:+52643766 Msa1254540:CDS
CCAAGAAAATTGACAAGAGG+AGG 0.583655 8_2:+52645689 Msa1254540:CDS
GTTTACAAGGTACAAGGCAA+AGG 0.590282 8_2:-52645945 None:intergenic
GCTCCAAGAAAATTGACAAG+AGG 0.594072 8_2:+52645686 Msa1254540:CDS
TGCTGCAGGATTACTGAGAG+TGG 0.597304 8_2:+52645471 Msa1254540:CDS
ACACTATGGCAGTTCTACTA+CGG 0.598069 8_2:+52645853 Msa1254540:three_prime_UTR
ATCACTCATAAGGTTCCTGT+TGG 0.598329 8_2:+52643538 Msa1254540:CDS
AATGATGAACAGAGGAGGAG+TGG 0.608787 8_2:+52645117 Msa1254540:CDS
TTTATCGCCGCCCAAAACAA+CGG 0.610991 8_2:-52643749 None:intergenic
TTTGAACACAGAGATGTGGT+AGG 0.612406 8_2:+52644251 Msa1254540:intron
AATGAAGGGAAACTTAGGAT+GGG 0.612702 8_2:+52644850 Msa1254540:intron
AAGCTGTATTTAATCCAACA+AGG 0.617413 8_2:+52644304 Msa1254540:CDS
ATGGCAGTTCTACTACGGAT+AGG 0.618341 8_2:+52645858 Msa1254540:three_prime_UTR
GAACAGCAACAAGGTGAATG+TGG 0.619368 8_2:+52645501 Msa1254540:CDS
AAATCAATTAGACAATTAAG+GGG 0.621061 8_2:-52645904 None:intergenic
GAAGAAGGTGCTGATTTGGA+GGG 0.640994 8_2:-52643466 None:intergenic
TCCGAAATGATGAACAGAGG+AGG 0.643527 8_2:+52645112 Msa1254540:CDS
ATGTGGAATTAGGTGTGCCT+GGG 0.644724 8_2:+52645518 Msa1254540:CDS
CAAAGACTGCTAGATCTCAA+GGG 0.647976 8_2:+52644350 Msa1254540:CDS
AGCTGTATTTAATCCAACAA+GGG 0.648583 8_2:+52644305 Msa1254540:CDS
TGCCTGGGAACAAAGCAAGA+AGG 0.654997 8_2:+52645533 Msa1254540:CDS
TTAAGCGAGTTGTTCACCAA+AGG 0.657800 8_2:-52645349 None:intergenic
GAAGAAGTTTCAAGTCTCAG+TGG 0.665599 8_2:+52644372 Msa1254540:CDS
AATCAATTAGACAATTAAGG+GGG 0.679389 8_2:-52645903 None:intergenic
GCAGTTACAGATGGACCAAG+AGG 0.685614 8_2:+52645031 Msa1254540:CDS
GAGTCCGAAATGATGAACAG+AGG 0.689687 8_2:+52645109 Msa1254540:CDS
CTGGAGCTAGACAAAGCGCA+CGG 0.693761 8_2:-52644919 None:intergenic
GATTTCGCTGCATAAAATGG+CGG 0.696414 8_2:-52645382 None:intergenic
GGATGATGTGAACAGCAACA+AGG 0.698794 8_2:+52645492 Msa1254540:CDS
CGAGTTCTGGAAACACCAAG+AGG 0.701607 8_2:-52643499 None:intergenic
TTGGAGGGCCTGAAACCTGG+AGG 0.724513 8_2:-52643451 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAAATTACATTCTTTTT+GGG - chr8_2:52644125-52644144 None:intergenic 10.0%
!!! TTATAAAATTACATTCTTTT+TGG - chr8_2:52644126-52644145 None:intergenic 10.0%
!!! AATGTAATTTTATAATTTGT+AGG + chr8_2:52644131-52644150 Msa1254540:intron 10.0%
!!! ATGTAATTTTATAATTTGTA+GGG + chr8_2:52644132-52644151 Msa1254540:intron 10.0%
!!! AAATGATTTTTTTAACAAAA+TGG - chr8_2:52644790-52644809 None:intergenic 10.0%
!!! TTGTTAAAAAAATCATTTTT+AGG + chr8_2:52644792-52644811 Msa1254540:intron 10.0%
!! TTATGAATAAATTGATATTA+TGG + chr8_2:52645981-52646000 Msa1254540:three_prime_UTR 10.0%
!! TATGAATAAATTGATATTAT+GGG + chr8_2:52645982-52646001 Msa1254540:three_prime_UTR 10.0%
!!! TTTTGTTTTTGTTTTTTACA+AGG + chr8_2:52643628-52643647 Msa1254540:intron 15.0%
!!! ATTTTAACGTTTTATCTAAA+TGG + chr8_2:52643674-52643693 Msa1254540:intron 15.0%
!!! TTTTAACGTTTTATCTAAAT+GGG + chr8_2:52643675-52643694 Msa1254540:intron 15.0%
!! ATATAAATAACTACCATATA+GGG - chr8_2:52644015-52644034 None:intergenic 15.0%
!!! TGTAATTTTATAATTTGTAG+GGG + chr8_2:52644133-52644152 Msa1254540:intron 15.0%
!!! AAAAGTCAAATATTCTTTTA+AGG - chr8_2:52644623-52644642 None:intergenic 15.0%
!! AGGAAATTAAGTTAAATAAA+TGG - chr8_2:52645826-52645845 None:intergenic 15.0%
!! TAAATCAATTAGACAATTAA+GGG - chr8_2:52645908-52645927 None:intergenic 15.0%
!! ATAAATCAATTAGACAATTA+AGG - chr8_2:52645909-52645928 None:intergenic 15.0%
!! CATATAAATAACTACCATAT+AGG - chr8_2:52644016-52644035 None:intergenic 20.0%
!! CTATATGGTAGTTATTTATA+TGG + chr8_2:52644014-52644033 Msa1254540:intron 20.0%
!!! AAAAGTCAAATACTCTTTTA+AGG - chr8_2:52644572-52644591 None:intergenic 20.0%
!!! TTTGAAATCTTTAAAGAGTA+TGG + chr8_2:52644663-52644682 Msa1254540:intron 20.0%
!!! TTGAAATCTTTAAAGAGTAT+GGG + chr8_2:52644664-52644683 Msa1254540:intron 20.0%
!! TTAAAAAATCCAAAACAAAC+CGG - chr8_2:52644690-52644709 None:intergenic 20.0%
!! AAATCAATTAGACAATTAAG+GGG - chr8_2:52645907-52645926 None:intergenic 20.0%
!! AATTGATATTATGGGTTTAT+TGG + chr8_2:52645990-52646009 Msa1254540:three_prime_UTR 20.0%
!!! CAATTTTTTGATGATGTTGT+TGG - chr8_2:52643392-52643411 None:intergenic 25.0%
!! AATCATTACCTGAACATTTT+TGG - chr8_2:52643584-52643603 None:intergenic 25.0%
!! TAATGATTTTCAACAACTTC+TGG + chr8_2:52643596-52643615 Msa1254540:intron 25.0%
!! AATGATTTTCAACAACTTCT+GGG + chr8_2:52643597-52643616 Msa1254540:intron 25.0%
!!! GTTTTGATTTTATGATCAGT+TGG + chr8_2:52643700-52643719 Msa1254540:intron 25.0%
! ATCCAAGAGAATATTATCAA+GGG - chr8_2:52643903-52643922 None:intergenic 25.0%
! ATCTTGAATTTATCCCTATA+TGG + chr8_2:52643999-52644018 Msa1254540:intron 25.0%
! AATGTGCACTAAACAAATAT+TGG + chr8_2:52644162-52644181 Msa1254540:intron 25.0%
!! TTTTCTTACCAATAATCTAG+TGG - chr8_2:52644407-52644426 None:intergenic 25.0%
!!! TGAACTTTGTTGTTTAATGA+AGG + chr8_2:52644835-52644854 Msa1254540:intron 25.0%
!!! GAACTTTGTTGTTTAATGAA+GGG + chr8_2:52644836-52644855 Msa1254540:intron 25.0%
!! ATTTTTCACTATGTTGGTAT+TGG - chr8_2:52645299-52645318 None:intergenic 25.0%
!! TGTGTAATTTTTCACTATGT+TGG - chr8_2:52645305-52645324 None:intergenic 25.0%
! ATAACATCATAGTGTTAGAT+TGG + chr8_2:52645785-52645804 Msa1254540:three_prime_UTR 25.0%
! AATCAATTAGACAATTAAGG+GGG - chr8_2:52645906-52645925 None:intergenic 25.0%
ATCATTTCACATCACTCATA+AGG + chr8_2:52643528-52643547 Msa1254540:CDS 30.0%
!!! ACATTTTTGGCTCTAACATA+AGG - chr8_2:52643571-52643590 None:intergenic 30.0%
! TTGATTTTATGATCAGTTGG+TGG + chr8_2:52643703-52643722 Msa1254540:intron 30.0%
TTGTTATGAAGCAACAGAAT+AGG + chr8_2:52643813-52643832 Msa1254540:CDS 30.0%
TGTTATGAAGCAACAGAATA+GGG + chr8_2:52643814-52643833 Msa1254540:CDS 30.0%
! ATCCCTTGATAATATTCTCT+TGG + chr8_2:52643898-52643917 Msa1254540:CDS 30.0%
GATCCAAGAGAATATTATCA+AGG - chr8_2:52643904-52643923 None:intergenic 30.0%
TATTCTCTTGGATCTATACA+AGG + chr8_2:52643910-52643929 Msa1254540:CDS 30.0%
!! ATTTTATAATTTGTAGGGGC+AGG + chr8_2:52644137-52644156 Msa1254540:intron 30.0%
AAGCTGTATTTAATCCAACA+AGG + chr8_2:52644304-52644323 Msa1254540:CDS 30.0%
AGCTGTATTTAATCCAACAA+GGG + chr8_2:52644305-52644324 Msa1254540:CDS 30.0%
ATCACACATGGTTAAATTCT+GGG + chr8_2:52644429-52644448 Msa1254540:intron 30.0%
TGTTTAATGAAGGGAAACTT+AGG + chr8_2:52644845-52644864 Msa1254540:intron 30.0%
AACAACAAGATGTGCAATTT+AGG + chr8_2:52644944-52644963 Msa1254540:CDS 30.0%
ACAGCAATTCAAGATGAATT+TGG + chr8_2:52645256-52645275 Msa1254540:CDS 30.0%
!!! AAAGGAGTAAACTTGTTTTG+TGG - chr8_2:52645334-52645353 None:intergenic 30.0%
ACAAAACAAGTTTACTCCTT+TGG + chr8_2:52645333-52645352 Msa1254540:CDS 30.0%
TACATTATCTTTGAGTCCAA+AGG + chr8_2:52645732-52645751 Msa1254540:CDS 30.0%
AGTCAATTAACTTAAGCCTT+TGG - chr8_2:52645751-52645770 None:intergenic 30.0%
! TAGAACAGATTTTGTTCCTG+CGG - chr8_2:52643368-52643387 None:intergenic 35.0%
AAATGATTCAGAACGAGTTC+TGG - chr8_2:52643515-52643534 None:intergenic 35.0%
TGTTAGAGCCAAAAATGTTC+AGG + chr8_2:52643573-52643592 Msa1254540:CDS 35.0%
!! TTATGATCAGTTGGTGGATA+AGG + chr8_2:52643709-52643728 Msa1254540:intron 35.0%
!! GGATAGTGCTTTGAAAGATA+TGG + chr8_2:52643787-52643806 Msa1254540:CDS 35.0%
! TGATTTTGAACACAGAGATG+TGG + chr8_2:52644247-52644266 Msa1254540:intron 35.0%
ATGACCAAATTGCTCTATTG+AGG + chr8_2:52644278-52644297 Msa1254540:CDS 35.0%
GTATTTAATCCAACAAGGGT+TGG + chr8_2:52644309-52644328 Msa1254540:CDS 35.0%
CATCACACATGGTTAAATTC+TGG + chr8_2:52644428-52644447 Msa1254540:intron 35.0%
! AATCTTTAAAGAGTATGGGC+CGG + chr8_2:52644668-52644687 Msa1254540:intron 35.0%
TAATGAAGGGAAACTTAGGA+TGG + chr8_2:52644849-52644868 Msa1254540:intron 35.0%
AATGAAGGGAAACTTAGGAT+GGG + chr8_2:52644850-52644869 Msa1254540:intron 35.0%
GGCATTTGTTTGATGAAACA+AGG + chr8_2:52644965-52644984 Msa1254540:CDS 35.0%
!!! AGACTCTTTGAAGCTTTTCT+TGG + chr8_2:52645157-52645176 Msa1254540:CDS 35.0%
! TTCTTGGTTCTTCATCAATC+TGG + chr8_2:52645173-52645192 Msa1254540:CDS 35.0%
GTGTGAATGTTATCCTTACA+AGG - chr8_2:52645208-52645227 None:intergenic 35.0%
GATGATTTCGCTGCATAAAA+TGG - chr8_2:52645388-52645407 None:intergenic 35.0%
AACAAGGTGAATGTGGAATT+AGG + chr8_2:52645508-52645527 Msa1254540:CDS 35.0%
!! TGATTTGTTGCCTGATACTA+AGG + chr8_2:52645582-52645601 Msa1254540:CDS 35.0%
TCTTCAAAGTCCTTAGTATC+AGG - chr8_2:52645595-52645614 None:intergenic 35.0%
! AATGAAAATGCTGCTACTTC+TGG + chr8_2:52645658-52645677 Msa1254540:CDS 35.0%
! ATGAAAATGCTGCTACTTCT+GGG + chr8_2:52645659-52645678 Msa1254540:CDS 35.0%
ATTTCCTGTATGCTACACTA+TGG + chr8_2:52645839-52645858 Msa1254540:three_prime_UTR 35.0%
GCATTGCAATAGAAAGGATT+TGG - chr8_2:52646018-52646037 None:intergenic 35.0%
! AGAACAGATTTTGTTCCTGC+GGG - chr8_2:52643367-52643386 None:intergenic 40.0%
CAACAATGATGCAAGAGATG+TGG + chr8_2:52643422-52643441 Msa1254540:exon 40.0%
ATCACTCATAAGGTTCCTGT+TGG + chr8_2:52643538-52643557 Msa1254540:CDS 40.0%
!! ACATAAGGAGTATCACCAAC+AGG - chr8_2:52643556-52643575 None:intergenic 40.0%
! AGAGAGCAATTCCGTTGTTT+TGG + chr8_2:52643738-52643757 Msa1254540:CDS 40.0%
!! GAGAGCAATTCCGTTGTTTT+GGG + chr8_2:52643739-52643758 Msa1254540:CDS 40.0%
TATCAAGGGATTCTTGTGCT+TGG - chr8_2:52643889-52643908 None:intergenic 40.0%
TGTGTTGTACTATGCACCAT+TGG + chr8_2:52644052-52644071 Msa1254540:intron 40.0%
GCACTATACACTTGATCCAA+TGG - chr8_2:52644071-52644090 None:intergenic 40.0%
TTTGAACACAGAGATGTGGT+AGG + chr8_2:52644251-52644270 Msa1254540:intron 40.0%
TGTGCCTCAATAGAGCAATT+TGG - chr8_2:52644285-52644304 None:intergenic 40.0%
ACAAAGACTGCTAGATCTCA+AGG + chr8_2:52644349-52644368 Msa1254540:CDS 40.0%
CAAAGACTGCTAGATCTCAA+GGG + chr8_2:52644350-52644369 Msa1254540:CDS 40.0%
! GAAGAAGTTTCAAGTCTCAG+TGG + chr8_2:52644372-52644391 Msa1254540:CDS 40.0%
ACAGGAAGCCACTAGATTAT+TGG + chr8_2:52644396-52644415 Msa1254540:CDS 40.0%
!! GGTAAGAAAAGCATCACACA+TGG + chr8_2:52644417-52644436 Msa1254540:intron 40.0%
!! TTGCACATCTTGTTGTTGTC+TGG - chr8_2:52644941-52644960 None:intergenic 40.0%
TAACTGCAGGTTTGACTCTA+TGG - chr8_2:52645018-52645037 None:intergenic 40.0%
!! CATTTGCTGTGCTCTTTCAT+AGG - chr8_2:52645077-52645096 None:intergenic 40.0%
TCCTCCTCTGTTCATCATTT+CGG - chr8_2:52645116-52645135 None:intergenic 40.0%
ATGTTATCCTTACAAGGCTG+AGG - chr8_2:52645202-52645221 None:intergenic 40.0%
GTTGATGTTGTTCTCATTGG+CGG - chr8_2:52645238-52645257 None:intergenic 40.0%
GCTGTTGATGTTGTTCTCAT+TGG - chr8_2:52645241-52645260 None:intergenic 40.0%
TTAAGCGAGTTGTTCACCAA+AGG - chr8_2:52645352-52645371 None:intergenic 40.0%
GATTTCGCTGCATAAAATGG+CGG - chr8_2:52645385-52645404 None:intergenic 40.0%
TGCAGCGAAATCATCTTTCA+AGG + chr8_2:52645393-52645412 Msa1254540:CDS 40.0%
CTGAGAGACTTAAGAGAACA+AGG + chr8_2:52645440-52645459 Msa1254540:CDS 40.0%
AGACTTAAGAGAACAAGGTC+TGG + chr8_2:52645445-52645464 Msa1254540:CDS 40.0%
!! TGCTATTCTTGCTGCTGTTT+TGG + chr8_2:52645615-52645634 Msa1254540:CDS 40.0%
!!! GCTATTCTTGCTGCTGTTTT+GGG + chr8_2:52645616-52645635 Msa1254540:CDS 40.0%
!!! CTATTCTTGCTGCTGTTTTG+GGG + chr8_2:52645617-52645636 Msa1254540:CDS 40.0%
GCTCCAAGAAAATTGACAAG+AGG + chr8_2:52645686-52645705 Msa1254540:CDS 40.0%
! CCTCCTCTTGTCAATTTTCT+TGG - chr8_2:52645692-52645711 None:intergenic 40.0%
CCAAGAAAATTGACAAGAGG+AGG + chr8_2:52645689-52645708 Msa1254540:CDS 40.0%
AATTGACAAGAGGAGGCTTA+AGG + chr8_2:52645696-52645715 Msa1254540:CDS 40.0%
TGTTAGATTGGAGATGAGCT+TGG + chr8_2:52645797-52645816 Msa1254540:three_prime_UTR 40.0%
ACACTATGGCAGTTCTACTA+CGG + chr8_2:52645853-52645872 Msa1254540:three_prime_UTR 40.0%
GTTTACAAGGTACAAGGCAA+AGG - chr8_2:52645948-52645967 None:intergenic 40.0%
TGCCTTGTACCTTGTAAACA+AGG + chr8_2:52645949-52645968 Msa1254540:three_prime_UTR 40.0%
!! TGCCTTGTTTACAAGGTACA+AGG - chr8_2:52645954-52645973 None:intergenic 40.0%
!! GTCAATGTGCCTTGTTTACA+AGG - chr8_2:52645961-52645980 None:intergenic 40.0%
TTCCTGCGGGGAAACAAAAA+TGG - chr8_2:52643354-52643373 None:intergenic 45.0%
! GAACAGATTTTGTTCCTGCG+GGG - chr8_2:52643366-52643385 None:intergenic 45.0%
!! GAAGAAGGTGCTGATTTGGA+GGG - chr8_2:52643469-52643488 None:intergenic 45.0%
!! TGAAGAAGGTGCTGATTTGG+AGG - chr8_2:52643470-52643489 None:intergenic 45.0%
!! AGGTGAAGAAGGTGCTGATT+TGG - chr8_2:52643473-52643492 None:intergenic 45.0%
! AGAGGTTTTGCAGGTGAAGA+AGG - chr8_2:52643484-52643503 None:intergenic 45.0%
TCTTCACCTGCAAAACCTCT+TGG + chr8_2:52643484-52643503 Msa1254540:CDS 45.0%
! GAAACACCAAGAGGTTTTGC+AGG - chr8_2:52643493-52643512 None:intergenic 45.0%
!! TCAGTTGGTGGATAAGGATC+CGG + chr8_2:52643715-52643734 Msa1254540:intron 45.0%
AACAACGGAATTGCTCTCTC+CGG - chr8_2:52643737-52643756 None:intergenic 45.0%
!!! AGCAATTCCGTTGTTTTGGG+CGG + chr8_2:52643742-52643761 Msa1254540:CDS 45.0%
TTTATCGCCGCCCAAAACAA+CGG - chr8_2:52643752-52643771 None:intergenic 45.0%
GATAAATGCGGGAGATAGAG+TGG + chr8_2:52643766-52643785 Msa1254540:CDS 45.0%
CATTGAAAGCCAACCCTTGT+TGG - chr8_2:52644321-52644340 None:intergenic 45.0%
!! CAACAAGGGTTGGCTTTCAA+TGG + chr8_2:52644319-52644338 Msa1254540:CDS 45.0%
! GTTTCAAGTCTCAGTGGAAC+AGG + chr8_2:52644378-52644397 Msa1254540:CDS 45.0%
GTCAAACCTGCAGTTACAGA+TGG + chr8_2:52645022-52645041 Msa1254540:CDS 45.0%
AGATGAGAATCTGAGCCTCT+TGG - chr8_2:52645049-52645068 None:intergenic 45.0%
GAGTCCGAAATGATGAACAG+AGG + chr8_2:52645109-52645128 Msa1254540:CDS 45.0%
TCCGAAATGATGAACAGAGG+AGG + chr8_2:52645112-52645131 Msa1254540:CDS 45.0%
AATGATGAACAGAGGAGGAG+TGG + chr8_2:52645117-52645136 Msa1254540:CDS 45.0%
GGATGATGTGAACAGCAACA+AGG + chr8_2:52645492-52645511 Msa1254540:CDS 45.0%
GAACAGCAACAAGGTGAATG+TGG + chr8_2:52645501-52645520 Msa1254540:CDS 45.0%
AATGTGGAATTAGGTGTGCC+TGG + chr8_2:52645517-52645536 Msa1254540:CDS 45.0%
ATGTGGAATTAGGTGTGCCT+GGG + chr8_2:52645518-52645537 Msa1254540:CDS 45.0%
ACTGCCATAGTGTAGCATAC+AGG - chr8_2:52645846-52645865 None:intergenic 45.0%
ATGGCAGTTCTACTACGGAT+AGG + chr8_2:52645858-52645877 Msa1254540:three_prime_UTR 45.0%
! AGGAGTAGCCATCTGCATTT+TGG + chr8_2:52645878-52645897 Msa1254540:three_prime_UTR 45.0%
!! TATAATTTAATCATAAAAAT+TGG - chr8_2:52643950-52643969 None:intergenic 5.0%
!! GTCCATTTTTGTTTCCCCGC+AGG + chr8_2:52643349-52643368 Msa1254540:five_prime_UTR 50.0%
!! CGAGTTCTGGAAACACCAAG+AGG - chr8_2:52643502-52643521 None:intergenic 50.0%
!! GTTTTGGGCGGCGATAAATG+CGG + chr8_2:52643754-52643773 Msa1254540:CDS 50.0%
! TTTTGGGCGGCGATAAATGC+GGG + chr8_2:52643755-52643774 Msa1254540:CDS 50.0%
!!! GAGTATGGGCCGGTTTGTTT+TGG + chr8_2:52644678-52644697 Msa1254540:intron 50.0%
CTTGGTCCATCTGTAACTGC+AGG - chr8_2:52645031-52645050 None:intergenic 50.0%
GCAGTTACAGATGGACCAAG+AGG + chr8_2:52645031-52645050 Msa1254540:CDS 50.0%
ACAAGGTCTGGAAATGCTGC+AGG + chr8_2:52645457-52645476 Msa1254540:CDS 50.0%
TGCTGCAGGATTACTGAGAG+TGG + chr8_2:52645471-52645490 Msa1254540:CDS 50.0%
TGCCTGGGAACAAAGCAAGA+AGG + chr8_2:52645533-52645552 Msa1254540:CDS 50.0%
! AGCCTTCTTGCTTTGTTCCC+AGG - chr8_2:52645538-52645557 None:intergenic 50.0%
AGGGGGATCCAAAATGCAGA+TGG - chr8_2:52645889-52645908 None:intergenic 50.0%
GAGATGTGGAATGCTCCTCC+AGG + chr8_2:52643436-52643455 Msa1254540:CDS 55.0%
GGAATGCTCCTCCAGGTTTC+AGG + chr8_2:52643443-52643462 Msa1254540:CDS 55.0%
GATTTGGAGGGCCTGAAACC+TGG - chr8_2:52643457-52643476 None:intergenic 55.0%
TAGACAAAGCGCACGGCGAT+AGG - chr8_2:52644915-52644934 None:intergenic 55.0%
CTGGAGCTAGACAAAGCGCA+CGG - chr8_2:52644922-52644941 None:intergenic 55.0%
TGAACAGAGGAGGAGTGGAC+AGG + chr8_2:52645122-52645141 Msa1254540:CDS 55.0%
! CTGGCAACCTCAGCCTTGTA+AGG + chr8_2:52645192-52645211 Msa1254540:CDS 55.0%
TTGGAGGGCCTGAAACCTGG+AGG - chr8_2:52643454-52643473 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52643308 52646040 52643308 ID=Msa1254540;Name=Msa1254540
chr8_2 mRNA 52643308 52646040 52643308 ID=Msa1254540-mRNA-1;Parent=Msa1254540;Name=Msa1254540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=119|1|1|1|1|1|4|281|479
chr8_2 exon 52643308 52643594 52643308 ID=Msa1254540-mRNA-1:exon:16143;Parent=Msa1254540-mRNA-1
chr8_2 exon 52643719 52643931 52643719 ID=Msa1254540-mRNA-1:exon:16144;Parent=Msa1254540-mRNA-1
chr8_2 exon 52644262 52644417 52644262 ID=Msa1254540-mRNA-1:exon:16145;Parent=Msa1254540-mRNA-1
chr8_2 exon 52644857 52646040 52644857 ID=Msa1254540-mRNA-1:exon:16146;Parent=Msa1254540-mRNA-1
chr8_2 five_prime_UTR 52643308 52643426 52643308 ID=Msa1254540-mRNA-1:five_prime_utr;Parent=Msa1254540-mRNA-1
chr8_2 CDS 52643427 52643594 52643427 ID=Msa1254540-mRNA-1:cds;Parent=Msa1254540-mRNA-1
chr8_2 CDS 52643719 52643931 52643719 ID=Msa1254540-mRNA-1:cds;Parent=Msa1254540-mRNA-1
chr8_2 CDS 52644262 52644417 52644262 ID=Msa1254540-mRNA-1:cds;Parent=Msa1254540-mRNA-1
chr8_2 CDS 52644857 52645759 52644857 ID=Msa1254540-mRNA-1:cds;Parent=Msa1254540-mRNA-1
chr8_2 three_prime_UTR 52645760 52646040 52645760 ID=Msa1254540-mRNA-1:three_prime_utr;Parent=Msa1254540-mRNA-1
Gene Sequence

>Msa1254540

ATGATGCAAGAGATGTGGAATGCTCCTCCAGGTTTCAGGCCCTCCAAATCAGCACCTTCTTCACCTGCAAAACCTCTTGGTGTTTCCAGAACTCGTTCTGAATCATTTCACATCACTCATAAGGTTCCTGTTGGTGATACTCCTTATGTTAGAGCCAAAAATGTTCAGTTGGTGGATAAGGATCCGGAGAGAGCAATTCCGTTGTTTTGGGCGGCGATAAATGCGGGAGATAGAGTGGATAGTGCTTTGAAAGATATGGCTATTGTTATGAAGCAACAGAATAGGGCTGAAGAAGCTATTGAAGCTATTAAATCACTTAGAAGCAGATGCTCAGACCAAGCACAAGAATCCCTTGATAATATTCTCTTGGATCTATACAAGAGATGTGGTAGGCTTGATGACCAAATTGCTCTATTGAGGCACAAGCTGTATTTAATCCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAAGTCTCAGTGGAACAGGAAGCCACTAGATTATTGGGAAACTTAGGATGGGCACTGATGCAACAAAACAACTACATAGAAGCAGAAGAAGCCTATCGCCGTGCGCTTTGTCTAGCTCCAGACAACAACAAGATGTGCAATTTAGGCATTTGTTTGATGAAACAAGGAAGAATAGCTGAAGCAAAAGAAACTCTCCATAGAGTCAAACCTGCAGTTACAGATGGACCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGAGCACAGCAAATGCTCAAAGATCTCGAGTCCGAAATGATGAACAGAGGAGGAGTGGACAGGCTTGAACAAAGTAGACTCTTTGAAGCTTTTCTTGGTTCTTCATCAATCTGGCAACCTCAGCCTTGTAAGGATAACATTCACACAAGCTTGCCGCCAATGAGAACAACATCAACAGCAATTCAAGATGAATTTGGTGATGAGAACATCAACTCCAATACCAACATAGTGAAAAATTACACAGCACAGCCACAAAACAAGTTTACTCCTTTGGTGAACAACTCGCTTAACGTTGCAGCTCCGCCATTTTATGCAGCGAAATCATCTTTCAAGGAATCAAATGAGAATTTGAATTTGTCTGAGAGACTTAAGAGAACAAGGTCTGGAAATGCTGCAGGATTACTGAGAGTGGATGATGTGAACAGCAACAAGGTGAATGTGGAATTAGGTGTGCCTGGGAACAAAGCAAGAAGGCTTTCGTTTGAGAAGAATAAGTTGTGTGATTTGTTGCCTGATACTAAGGACTTTGAAGATGCTATTCTTGCTGCTGTTTTGGGGTCTTCAAATGAGTTAGAGAATGAAAATGCTGCTACTTCTGGGATTTGCTCCAAGAAAATTGACAAGAGGAGGCTTAAGGTTTTTCAAGATATTACATTATCTTTGAGTCCAAAGGCTTAA

Protein sequence

>Msa1254540

MMQEMWNAPPGFRPSKSAPSSPAKPLGVSRTRSESFHITHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLRHKLYLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGSDSHLKAYERAQQMLKDLESEMMNRGGVDRLEQSRLFEAFLGSSSIWQPQPCKDNIHTSLPPMRTTSTAIQDEFGDENINSNTNIVKNYTAQPQNKFTPLVNNSLNVAAPPFYAAKSSFKESNENLNLSERLKRTRSGNAAGLLRVDDVNSNKVNVELGVPGNKARRLSFEKNKLCDLLPDTKDFEDAILAAVLGSSNELENENAATSGICSKKIDKRRLKVFQDITLSLSPKA*