AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1399190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1399190 MtrunA17_Chr6g0486931 87.991 941 81 6 1 915 1 935 0.0 1658
Msa1399190 MtrunA17_Chr6g0484831 54.756 778 312 11 141 896 60 819 0.0 835
Msa1399190 MtrunA17_Chr5g0406641 54.417 781 310 12 141 896 61 820 0.0 825
Msa1399190 MtrunA17_Chr7g0215341 51.371 839 361 13 77 896 1 811 0.0 820
Msa1399190 MtrunA17_Chr4g0007641 51.127 843 347 14 89 896 15 827 0.0 814
Msa1399190 MtrunA17_Chr6g0464681 49.059 797 319 11 141 896 60 810 0.0 734
Msa1399190 MtrunA17_Chr8g0369361 48.524 779 364 13 141 895 9 774 0.0 726
Msa1399190 MtrunA17_Chr5g0427891 85.596 361 52 0 555 915 1 361 0.0 643
Msa1399190 MtrunA17_Chr5g0427871 80.000 130 26 0 116 245 13 142 2.78e-69 226
Msa1399190 MtrunA17_Chr2g0302601 37.260 365 196 9 513 872 1213 1549 5.46e-64 236
Msa1399190 MtrunA17_Chr6g0477371 37.534 365 195 9 513 872 1204 1540 7.87e-64 235
Msa1399190 MtrunA17_Chr4g0017221 36.986 365 197 9 513 872 1188 1524 1.54e-61 228
Msa1399190 MtrunA17_Chr8g0364091 57.923 183 56 4 218 386 37 212 3.20e-57 197
Msa1399190 MtrunA17_Chr8g0364111 70.270 74 22 0 830 903 3 76 6.73e-31 116
Msa1399190 MtrunA17_Chr3g0087051 39.474 152 80 4 723 872 2 143 6.46e-24 99.0
Msa1399190 MtrunA17_Chr5g0427881 62.121 66 9 2 481 530 38 103 1.23e-18 82.0
Msa1399190 MtrunA17_Chr5g0427881 90.000 40 4 0 369 408 1 40 4.36e-18 80.5
Msa1399190 MtrunA17_Chr2g0306841 44.828 87 48 0 630 716 15 101 1.21e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1399190 AT1G69770.1 53.373 830 346 17 95 895 10 827 0.0 822
Msa1399190 AT4G19020.1 49.045 785 358 13 134 895 516 1281 0.0 758
Msa1399190 AT4G19020.2 49.045 785 358 13 134 895 468 1233 0.0 757
Msa1399190 AT1G80740.1 48.408 785 355 11 141 896 19 782 0.0 700
Msa1399190 AT5G49160.1 38.606 373 184 12 511 872 1179 1517 1.03e-61 229
Msa1399190 AT5G49160.2 38.606 373 184 12 511 872 1091 1429 1.41e-61 228
Msa1399190 AT4G14140.3 36.240 367 201 7 511 872 1164 1502 7.40e-61 226
Msa1399190 AT4G14140.1 36.240 367 201 7 511 872 1164 1502 7.40e-61 226
Msa1399190 AT4G14140.2 36.240 367 201 7 511 872 1190 1528 7.60e-61 226
Msa1399190 AT4G08990.1 35.150 367 205 7 511 872 1157 1495 3.81e-58 218
Msa1399190 AT4G13610.1 35.616 365 194 9 511 872 1066 1392 1.38e-57 216

Find 203 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCAATTAATGGTCTTTA+TGG 0.121671 tig0022333:-44901 Msa1399190:CDS
TTTCTGGATGGTTGAGTTTA+AGG 0.146275 tig0022333:+47337 None:intergenic
TATCCAATTACCTCAGTTTC+TGG 0.167645 tig0022333:+47321 None:intergenic
TGGACCTGGATTATACTTTA+AGG 0.203873 tig0022333:-46357 Msa1399190:intron
TATGCCAGGTACATTCAAAT+TGG 0.241454 tig0022333:-42139 Msa1399190:intron
TCGGCCTAGATTCACATTAA+TGG 0.244123 tig0022333:-44862 Msa1399190:CDS
ATCGAAACAGTTTCACTCTT+TGG 0.251664 tig0022333:+50678 None:intergenic
AATCGGATCCCCTATAAATT+TGG 0.263553 tig0022333:+50620 None:intergenic
TTTCCAACTCCAAATTTATA+GGG 0.277522 tig0022333:-50629 Msa1399190:CDS
GTTTCCAACTCCAAATTTAT+AGG 0.294805 tig0022333:-50630 Msa1399190:CDS
TTGTCTTGGCCTTGCATCTC+AGG 0.296396 tig0022333:-42077 Msa1399190:CDS
AAAAGTGGGAAAAGTAATTA+AGG 0.309627 tig0022333:+51154 None:intergenic
ATTCTAGCTGCTGGGGCCTA+CGG 0.314128 tig0022333:-44744 Msa1399190:CDS
CTTCCCAGCCATGATGAAAA+TGG 0.315624 tig0022333:+51046 None:intergenic
TCTCAGGGTGCTTCTGTTGA+TGG 0.315920 tig0022333:-42061 Msa1399190:CDS
TGAAAAGAACAAGCAATTAA+TGG 0.326867 tig0022333:-44910 Msa1399190:CDS
TATACCTGATTGTGGGGTTC+TGG 0.327007 tig0022333:+42700 None:intergenic
GTTACCGCTGATTCTGTTTC+CGG 0.328156 tig0022333:-50984 Msa1399190:CDS
CTCTTTGGCTCCTTTCCTCC+AGG 0.328474 tig0022333:+50693 None:intergenic
TACTCAGAAACTAAAGAAAA+TGG 0.331241 tig0022333:-47697 Msa1399190:intron
ATAAACATATACCTTCCTTT+TGG 0.334429 tig0022333:+43531 None:intergenic
TAAACCATATGATATTTATC+TGG 0.341213 tig0022333:-41809 Msa1399190:three_prime_UTR
TTCTGTACCTGTGGAGTTTG+AGG 0.349718 tig0022333:-44335 Msa1399190:intron
TCGTAGTAGATCTAGGAAAA+TGG 0.352405 tig0022333:-50826 Msa1399190:CDS
CGTTATGATGATAAGGAAAC+TGG 0.362966 tig0022333:-46377 Msa1399190:CDS
TAACTGCAAGGAAAGGATTA+AGG 0.363628 tig0022333:-45207 Msa1399190:CDS
ATCAGCGGTAACTGCGTTAC+CGG 0.365189 tig0022333:+50995 None:intergenic
CACAAAAGAAATAGCATAGT+TGG 0.374643 tig0022333:+42908 None:intergenic
CGCGAAAATGCTAGATTACA+AGG 0.375043 tig0022333:-42518 Msa1399190:CDS
CAGAAACTATGCTAATCCTT+TGG 0.375291 tig0022333:-44937 Msa1399190:CDS
CGGTTGGGAATTCTAGCTGC+TGG 0.380171 tig0022333:-44753 Msa1399190:CDS
CTAGATTTGTACTCTGGTTG+TGG 0.385732 tig0022333:-47556 Msa1399190:CDS
GAGCGTGAATTATTGCCTTC+AGG 0.385932 tig0022333:-43237 Msa1399190:CDS
GCCGCTGCCGATTCAGCTAC+TGG 0.387797 tig0022333:-50855 Msa1399190:CDS
GTCAAGCATCTTACCATTGC+CGG 0.391508 tig0022333:-45162 Msa1399190:intron
ATGTGGCGGACCTCCTTGTC+AGG 0.394268 tig0022333:-44982 Msa1399190:CDS
ACCTTCTCCTGATACCGTTT+CGG 0.396188 tig0022333:+50570 None:intergenic
TTCAGATCCGCTTTCTTCTT+AGG 0.396573 tig0022333:+50717 None:intergenic
CATACTGCACCTTGAGTTTG+TGG 0.400472 tig0022333:-41962 Msa1399190:exon
AGTCGTGATGACATGGAATA+TGG 0.400598 tig0022333:-44011 Msa1399190:CDS
TGGTTGACTTACTGTGTCAT+TGG 0.402697 tig0022333:+48630 None:intergenic
GTTACCGCCGATTCAACTTC+CGG 0.404821 tig0022333:-50948 Msa1399190:CDS
TGGATATTGTTCAATACCTT+CGG 0.408157 tig0022333:-44881 Msa1399190:CDS
TTTATTAGATTAAGCGAAAG+TGG 0.408399 tig0022333:-43960 Msa1399190:intron
GTCTCCGCTGATTCAACATC+TGG 0.420805 tig0022333:-50756 Msa1399190:CDS
CTCAGGGTGCTTCTGTTGAT+GGG 0.422570 tig0022333:-42060 Msa1399190:CDS
AATCCAATGGATTGTCATCC+TGG 0.423498 tig0022333:+48455 None:intergenic
TCTGACAAGCATCTTTGTTA+AGG 0.428721 tig0022333:+47361 None:intergenic
TATCCTAGAGCACGACCAAC+TGG 0.430266 tig0022333:+42100 None:intergenic
CACATTTGTTAAACTACCAT+CGG 0.432623 tig0022333:-47807 Msa1399190:CDS
ACTTCCAGATAAATATCATA+TGG 0.433056 tig0022333:+41805 None:intergenic
GGAAGATGAAGAGGAGGAAG+AGG 0.437300 tig0022333:-46465 Msa1399190:CDS
TATACAGAGGCACAGGTTGA+TGG 0.439720 tig0022333:-49050 Msa1399190:CDS
GTTCCAGTTGGTCGTGCTCT+AGG 0.442405 tig0022333:-42103 Msa1399190:CDS
AAGAAAGCGGATCTGAATCC+TGG 0.445996 tig0022333:-50711 Msa1399190:CDS
GTGAGACTCGTAGTAGATCT+AGG 0.450528 tig0022333:-50833 Msa1399190:CDS
ATGCCAGGTACATTCAAATT+GGG 0.451945 tig0022333:-42138 Msa1399190:intron
ATGAATTATCAAAGTCGGTT+GGG 0.454442 tig0022333:-44768 Msa1399190:CDS
AATAATTCACGCTCCACATC+AGG 0.457569 tig0022333:+43246 None:intergenic
ATGCTTGTAGGGTTGTTTAG+TGG 0.469486 tig0022333:-44224 Msa1399190:intron
CCTCTCGTTGTTGAAGGAGT+GGG 0.474584 tig0022333:-46561 Msa1399190:CDS
AATGAATTATCAAAGTCGGT+TGG 0.476288 tig0022333:-44769 Msa1399190:CDS
TCCTCTCGTTGTTGAAGGAG+TGG 0.477495 tig0022333:-46562 Msa1399190:CDS
GTTAAGATATACCTGATTGT+GGG 0.480775 tig0022333:+42693 None:intergenic
GGTTGGGAATTCTAGCTGCT+GGG 0.481551 tig0022333:-44752 Msa1399190:CDS
GGTTGTGGAGGAATGTCAAC+AGG 0.483575 tig0022333:-47541 Msa1399190:CDS
AGGGGATCCGATTCCGATAG+AGG 0.485738 tig0022333:-50610 Msa1399190:CDS
ATACAGAGGCACAGGTTGAT+GGG 0.487766 tig0022333:-49049 Msa1399190:CDS
TAGACCAGAACCCCACAATC+AGG 0.490039 tig0022333:-42704 Msa1399190:intron
TCCCACCATATCCGAGCAAA+AGG 0.490769 tig0022333:+42751 None:intergenic
TTAGCCTCCTCTATCGGAAT+CGG 0.491014 tig0022333:+50603 None:intergenic
CTAAGCTGCGTTGGCCGAAA+CGG 0.492035 tig0022333:-50584 Msa1399190:CDS
GAGATGTTTGAAGCAGTTGA+TGG 0.492805 tig0022333:-48688 Msa1399190:CDS
TAGTTTAACAAATGTGGAGT+AGG 0.493722 tig0022333:+47814 None:intergenic
TTGGGAAATATAAAGAAAAG+TGG 0.494062 tig0022333:+51139 None:intergenic
AGTCTCACCAGTAGCTGAAT+CGG 0.495085 tig0022333:+50848 None:intergenic
TATGCAACATGCAGAGATGT+TGG 0.496031 tig0022333:-43650 Msa1399190:intron
CTGCACCTTGAGTTTGTGGT+TGG 0.496487 tig0022333:-41958 Msa1399190:exon
TTTCAGAAGGCTTTCTAGGA+AGG 0.497252 tig0022333:-44815 Msa1399190:CDS
ATCCCCTATAAATTTGGAGT+TGG 0.498037 tig0022333:+50626 None:intergenic
ACAAAAGAAATAGCATAGTT+GGG 0.498692 tig0022333:+42909 None:intergenic
GCAGCACTGTTCGTAAATCT+AGG 0.504123 tig0022333:-50926 Msa1399190:CDS
AAGTTGCTAGATTTGTACTC+TGG 0.505648 tig0022333:-47562 Msa1399190:CDS
CGCAGCTTAGCCTCCTCTAT+CGG 0.506729 tig0022333:+50597 None:intergenic
AGTGCTGCCGGAAGTTGAAT+CGG 0.507191 tig0022333:+50941 None:intergenic
ACTCTCAATAGACAAATTTG+AGG 0.508184 tig0022333:-41919 Msa1399190:three_prime_UTR
TTTCTAGGAAGGTATGCATT+GGG 0.508340 tig0022333:-44804 Msa1399190:CDS
ACTCATGATGTTATAGAAAG+AGG 0.510062 tig0022333:-44358 Msa1399190:CDS
GATTAGCATAGTTTCTGAAA+CGG 0.511868 tig0022333:+44943 None:intergenic
ATGCAACATGCAGAGATGTT+GGG 0.516499 tig0022333:-43649 Msa1399190:intron
CTTTCTAGGAAGGTATGCAT+TGG 0.516728 tig0022333:-44805 Msa1399190:CDS
CTTGAGCTCTAATCTGAGAA+TGG 0.516934 tig0022333:+48414 None:intergenic
TAATGAGGAAGATGAAGAGG+AGG 0.518697 tig0022333:-46471 Msa1399190:CDS
TGTCTTGGCCTTGCATCTCA+GGG 0.519037 tig0022333:-42076 Msa1399190:CDS
AATCTCGTTCAAGATCAATC+AGG 0.519322 tig0022333:-49226 Msa1399190:intron
GATAGCACTCTATCTTGCTC+TGG 0.520203 tig0022333:+42545 None:intergenic
AATTCGAAAATTACCGGCAA+TGG 0.521218 tig0022333:+45149 None:intergenic
TTAAAATGAATTATCAAAGT+CGG 0.522583 tig0022333:-44773 Msa1399190:CDS
ACATTTGTTAAACTACCATC+GGG 0.524581 tig0022333:-47806 Msa1399190:intron
TGATGTACGTTATGATGATA+AGG 0.525372 tig0022333:-46384 Msa1399190:CDS
CAATTACCTCAGTTTCTGGA+TGG 0.527764 tig0022333:+47325 None:intergenic
CGTGCTCTAGGATATTGTCT+TGG 0.528052 tig0022333:-42091 Msa1399190:CDS
GGCAGTATGTCCTTCGCTAT+AGG 0.530310 tig0022333:+44201 None:intergenic
GGTAACAGAAACGGCATCGC+CGG 0.530751 tig0022333:+50965 None:intergenic
GGTAACTGCGTTACCGGAGA+TGG 0.533055 tig0022333:+51001 None:intergenic
TGGGAAATATAAAGAAAAGT+GGG 0.534271 tig0022333:+51140 None:intergenic
AGATTTACGAACAGTGCTGC+CGG 0.536628 tig0022333:+50929 None:intergenic
AGTTTAACAAATGTGGAGTA+GGG 0.540220 tig0022333:+47815 None:intergenic
AAGACCGATGATCATGAAGC+AGG 0.541642 tig0022333:+43596 None:intergenic
CTCTCAATAGACAAATTTGA+GGG 0.542464 tig0022333:-41918 Msa1399190:three_prime_UTR
TGGCTGGGAAGCGTAAATCT+AGG 0.550525 tig0022333:-51034 Msa1399190:CDS
TAATGAAAGTCGTGATGACA+TGG 0.550942 tig0022333:-44018 Msa1399190:CDS
AATCCAGGATGACAATCCAT+TGG 0.551080 tig0022333:-48458 Msa1399190:CDS
TATGCGGATCTGTCAAAGAA+AGG 0.551479 tig0022333:-42475 Msa1399190:intron
AATACCTTAAAGTATAATCC+AGG 0.552183 tig0022333:+46353 None:intergenic
AGTATCATTTGAAATTGTTG+AGG 0.552349 tig0022333:+47663 None:intergenic
AGTTAAGATATACCTGATTG+TGG 0.553141 tig0022333:+42692 None:intergenic
TTCCAACTCCAAATTTATAG+GGG 0.554073 tig0022333:-50628 Msa1399190:CDS
GTCAACAGGATTATGTCAAG+GGG 0.554921 tig0022333:-47527 Msa1399190:CDS
ATTAAGGACTTCGTCACTCG+CGG 0.555971 tig0022333:-45191 Msa1399190:CDS
ATTTACCGTGTGTTCGTATG+CGG 0.556301 tig0022333:-43290 Msa1399190:CDS
GAAGAGGAGGAAGAGGATGA+TGG 0.557865 tig0022333:-46458 Msa1399190:CDS
ATAACATCATGAGTTGGTAG+TGG 0.559547 tig0022333:+44367 None:intergenic
TAGAGGAGGCTAAGCTGCGT+TGG 0.559672 tig0022333:-50593 Msa1399190:CDS
ACCAGTAGCTGAATCGGCAG+CGG 0.560197 tig0022333:+50854 None:intergenic
CGATGGTAGTTTAACAAATG+TGG 0.560293 tig0022333:+47808 None:intergenic
TATGCACAACAGTGATGAAG+AGG 0.562622 tig0022333:-49096 Msa1399190:intron
CATTCTCAGATTAGAGCTCA+AGG 0.564124 tig0022333:-48413 Msa1399190:intron
TGAATCGGCGGTAACAGAAA+CGG 0.566756 tig0022333:+50956 None:intergenic
GATGATAAGGAAACTGGACC+TGG 0.566842 tig0022333:-46371 Msa1399190:CDS
GTGCATGTCGAATCCCCAAA+AGG 0.570792 tig0022333:-43546 Msa1399190:CDS
CTTTCTATAACATCATGAGT+TGG 0.575172 tig0022333:+44361 None:intergenic
GGAGACATTCACAGCATCAC+TGG 0.575330 tig0022333:+50773 None:intergenic
AGCATCACTGGAAGCAGAAG+AGG 0.575625 tig0022333:+50785 None:intergenic
ATTAACAGTGTCGACTGAAG+AGG 0.576040 tig0022333:+50884 None:intergenic
AGTCCCTGCTTCATGATCAT+CGG 0.580310 tig0022333:-43600 Msa1399190:CDS
ATTGCCTTCAGGAAAACCAC+TGG 0.580403 tig0022333:-43226 Msa1399190:intron
ACTAGTAGATATACCTCTGA+AGG 0.584053 tig0022333:+44678 None:intergenic
TACAGAGGCACAGGTTGATG+GGG 0.585434 tig0022333:-49048 Msa1399190:CDS
TGGGAAAAGTAATTAAGGAA+AGG 0.585525 tig0022333:+51159 None:intergenic
AAGACACGAAGGCGAAATTG+AGG 0.587215 tig0022333:+44717 None:intergenic
GCATCAGTAACTGCAAGGAA+AGG 0.590910 tig0022333:-45214 Msa1399190:intron
ATGTCACTATACAGAGGCAC+AGG 0.592207 tig0022333:-49057 Msa1399190:CDS
GCCGAAACGGTATCAGGAGA+AGG 0.593567 tig0022333:-50571 Msa1399190:intron
AGATTTGTGTATTCCTCATG+TGG 0.594779 tig0022333:+46497 None:intergenic
GATTTGTACTCTGGTTGTGG+AGG 0.597555 tig0022333:-47553 Msa1399190:CDS
TGTCAACAGGATTATGTCAA+GGG 0.597856 tig0022333:-47528 Msa1399190:CDS
TGTTATCATGTAGGGACATG+TGG 0.599079 tig0022333:-45012 Msa1399190:intron
TTCTTAACAAGACAATCCAA+TGG 0.599271 tig0022333:+48442 None:intergenic
TGTTTAGTGGCCTATAGCGA+AGG 0.602249 tig0022333:-44211 Msa1399190:CDS
ACACATACCTCAAACTCCAC+AGG 0.602368 tig0022333:+44328 None:intergenic
TTTCAGGTCATCAAACAACT+AGG 0.603040 tig0022333:-48517 Msa1399190:intron
ATGTCAACAGGATTATGTCA+AGG 0.605261 tig0022333:-47529 Msa1399190:CDS
CAGAAGCACCCTGAGATGCA+AGG 0.608985 tig0022333:+42068 None:intergenic
GGATCTGAATCCTGGAGGAA+AGG 0.609350 tig0022333:-50703 Msa1399190:CDS
AGAAAGAGGTTCTGTACCTG+TGG 0.614587 tig0022333:-44344 Msa1399190:CDS
AATGCAGTTGCTGTTCCAGT+TGG 0.614810 tig0022333:-42115 Msa1399190:CDS
CAAGAAGCCTAAGAAGAAAG+CGG 0.615509 tig0022333:-50724 Msa1399190:CDS
GTTGGGAATTCTAGCTGCTG+GGG 0.617659 tig0022333:-44751 Msa1399190:CDS
AAATCTAGCAACTTCATCTG+TGG 0.618134 tig0022333:+47571 None:intergenic
TCTGGTCTAGTGACAACAGT+AGG 0.618650 tig0022333:+42718 None:intergenic
ATGTCGAATCCCCAAAAGGA+AGG 0.619248 tig0022333:-43542 Msa1399190:intron
CCCACTCCTTCAACAACGAG+AGG 0.622287 tig0022333:+46561 None:intergenic
TAGATATACCTCTGAAGGTG+CGG 0.622584 tig0022333:+44683 None:intergenic
AGACCGATGATCATGAAGCA+GGG 0.623183 tig0022333:+43597 None:intergenic
TTAAGATATACCTGATTGTG+GGG 0.623431 tig0022333:+42694 None:intergenic
CCTATGCATCAGTAACTGCA+AGG 0.629663 tig0022333:-45219 Msa1399190:intron
ATCATCCAACCACAAACTCA+AGG 0.630414 tig0022333:+41953 None:intergenic
ACTGTTTCGATGAATGTTGA+CGG 0.631556 tig0022333:-50666 Msa1399190:CDS
ATCACTGGAAGCAGAAGAGG+TGG 0.631836 tig0022333:+50788 None:intergenic
TGTGGCGGACCTCCTTGTCA+GGG 0.634677 tig0022333:-44981 Msa1399190:CDS
CCTCCTTGTCAGGGAGTAAG+CGG 0.635996 tig0022333:-44972 Msa1399190:CDS
TTGTTCCGCATACGAACACA+CGG 0.643671 tig0022333:+43285 None:intergenic
TGAGTTGGTAGTGGAAATTG+AGG 0.644619 tig0022333:+44376 None:intergenic
TTATGATGATGCGTATGTGC+AGG 0.645095 tig0022333:-49009 Msa1399190:intron
AGTTGAATTGAATCCTGATG+TGG 0.646022 tig0022333:-43259 Msa1399190:CDS
GCTGAGAAGAGGATGTGAAG+AGG 0.648376 tig0022333:+51068 None:intergenic
GGACATGTGGATGTAGTATG+TGG 0.648515 tig0022333:-44999 Msa1399190:CDS
AAAAGAACAAGCTTCTACTG+CGG 0.653435 tig0022333:-42002 Msa1399190:CDS
GTATCGCAGTAATAATCGCA+AGG 0.655981 tig0022333:+47851 None:intergenic
TGATGAAAATGGCTGAGAAG+AGG 0.657001 tig0022333:+51057 None:intergenic
TGATCAGGTAGCGTGTACAA+AGG 0.658061 tig0022333:+42037 None:intergenic
CTTACCAGATGTTGAATCAG+CGG 0.658989 tig0022333:+50752 None:intergenic
TTAATGTGAATCTAGGCCGA+AGG 0.663453 tig0022333:+44865 None:intergenic
ACTCAACCATCCAGAAACTG+AGG 0.671083 tig0022333:-47331 Msa1399190:intron
GCGAAATTGAGGAAGCCCGT+AGG 0.673350 tig0022333:+44728 None:intergenic
ATGTTTGAAGCAGTTGATGG+AGG 0.674704 tig0022333:-48685 Msa1399190:CDS
CCGCTTACTCCCTGACAAGG+AGG 0.675819 tig0022333:+44972 None:intergenic
ACAGAGGCACAGGTTGATGG+GGG 0.679723 tig0022333:-49047 Msa1399190:CDS
CAACAGGATTATGTCAAGGG+GGG 0.682738 tig0022333:-47525 Msa1399190:CDS
AAGCCGCTTACTCCCTGACA+AGG 0.684437 tig0022333:+44969 None:intergenic
ATCGCCGGAAACAGAATCAG+CGG 0.684638 tig0022333:+50980 None:intergenic
TGAAGTGAATGCAAAATCTG+AGG 0.687865 tig0022333:-47641 Msa1399190:CDS
CGTGATGACATGGAATATGG+CGG 0.689162 tig0022333:-44008 Msa1399190:CDS
GACTGTATTTCACAGCACAA+TGG 0.692378 tig0022333:-48663 Msa1399190:CDS
GCTGCCGGAAGTTGAATCGG+CGG 0.702269 tig0022333:+50944 None:intergenic
GGATCCGATTCCGATAGAGG+AGG 0.709941 tig0022333:-50607 Msa1399190:CDS
TCAACAGGATTATGTCAAGG+GGG 0.717776 tig0022333:-47526 Msa1399190:CDS
CATGTGGATGTAGTATGTGG+CGG 0.721390 tig0022333:-44996 Msa1399190:CDS
AGCTAGATGTCACTATACAG+AGG 0.722166 tig0022333:-49063 Msa1399190:CDS
AAAGCGGATCTGAATCCTGG+AGG 0.746525 tig0022333:-50708 Msa1399190:CDS
TCGCAGTAATAATCGCAAGG+TGG 0.748769 tig0022333:+47854 None:intergenic
GTTTCGATGAATGTTGACGG+CGG 0.807539 tig0022333:-50663 Msa1399190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAAATAGATTTTGTA+TGG - tig0022333:42561-42580 Msa1399190:intron 10.0%
!!! CATAATGATTATTTTAATTA+CGG - tig0022333:43468-43487 Msa1399190:intron 10.0%
!!! TTAATTTTATTTTGTGATTT+AGG - tig0022333:43671-43690 Msa1399190:intron 10.0%
!!! TTTTCTATGTAATTATTTTA+AGG - tig0022333:44617-44636 Msa1399190:intron 10.0%
!! AACTACAATAATTAAAAATA+AGG + tig0022333:44991-45010 None:intergenic 10.0%
!!! TATATATAATTTTTAAACGT+GGG + tig0022333:47038-47057 None:intergenic 10.0%
!!! ATATATATAATTTTTAAACG+TGG + tig0022333:47039-47058 None:intergenic 10.0%
!! TTAAAAATAAAATGAAGTTA+TGG + tig0022333:48290-48309 None:intergenic 10.0%
!! TTCTAGTAAAAAATAAATAA+GGG + tig0022333:50354-50373 None:intergenic 10.0%
!!! TTTCTAGTAAAAAATAAATA+AGG + tig0022333:50355-50374 None:intergenic 10.0%
!!! TTATTTTGTTGTTTTCTTTA+AGG - tig0022333:44559-44578 Msa1399190:intron 15.0%
!!! TTTTCTATGTAATTATAAAC+TGG - tig0022333:44640-44659 Msa1399190:intron 15.0%
!!! AAGTAGTATTTAAAATTGTA+GGG - tig0022333:44787-44806 Msa1399190:CDS 15.0%
!!! TTTGTTTTTTTAACAGAAAT+GGG - tig0022333:45538-45557 Msa1399190:intron 15.0%
!! AATTTAGTTAAAATCAACAT+GGG + tig0022333:45737-45756 None:intergenic 15.0%
!!! AGTTTTTAATTATAATACCA+TGG + tig0022333:46198-46217 None:intergenic 15.0%
!! AAGTTAATTAAAACTATACA+CGG + tig0022333:47532-47551 None:intergenic 15.0%
!! AAAAATAATTCGAAAATTAC+CGG + tig0022333:47789-47808 None:intergenic 15.0%
!! TTAAAATGAATTATCAAAGT+CGG - tig0022333:48156-48175 Msa1399190:intron 15.0%
!! TCTAAAAACAATATCATAAT+GGG + tig0022333:48318-48337 None:intergenic 15.0%
!! ATGTCTTTCTAATTATTTAA+TGG - tig0022333:48377-48396 Msa1399190:intron 15.0%
!!! TATTTTGTTATGTTGAATTT+TGG - tig0022333:48505-48524 Msa1399190:CDS 15.0%
!! TCTATATTAATGAAAAAATG+AGG + tig0022333:48851-48870 None:intergenic 15.0%
!!! TAAATAAAAAATTGCTACTT+TGG + tig0022333:49257-49276 None:intergenic 15.0%
!! TTGAATTTCAACAAATATAA+TGG + tig0022333:49502-49521 None:intergenic 15.0%
!!! GATTCTTTAATTGTTATTTT+AGG - tig0022333:49995-50014 Msa1399190:intron 15.0%
!! GTTTAAACAAAAAATAAGTT+TGG - tig0022333:50065-50084 Msa1399190:intron 15.0%
!! TATGGTTTATATTTGTATAA+TGG - tig0022333:50511-50530 Msa1399190:intron 15.0%
!! ATTATTTAACAAAGAATCTA+TGG + tig0022333:50746-50765 None:intergenic 15.0%
!! TAACAATTTATAAAACTTTC+AGG + tig0022333:50772-50791 None:intergenic 15.0%
!! AATTCTTTATTCTTGCATTT+AGG + tig0022333:43010-43029 None:intergenic 20.0%
!!! TACATTTTACAAATTGTTAC+CGG + tig0022333:43099-43118 None:intergenic 20.0%
!! TAACAAGAATAGTTTAATTC+TGG - tig0022333:43270-43289 Msa1399190:CDS 20.0%
!! ATCAACAAATTAATGATTCA+AGG + tig0022333:43419-43438 None:intergenic 20.0%
!! AAGTGAAAAATTTAACAATG+AGG + tig0022333:44112-44131 None:intergenic 20.0%
!!! TTTTAATATTTTTGCACACA+TGG - tig0022333:44130-44149 Msa1399190:intron 20.0%
!! AAAAACCTAATTACAAAAAC+TGG - tig0022333:44666-44685 Msa1399190:intron 20.0%
!!! GAAGTAGTATTTAAAATTGT+AGG - tig0022333:44786-44805 Msa1399190:CDS 20.0%
!! AAAAACAAAAAAGAAGCTTT+GGG - tig0022333:44822-44841 Msa1399190:CDS 20.0%
!! CAACTGAATTCTTATTATAT+TGG - tig0022333:45490-45509 Msa1399190:intron 20.0%
!! CATTTCTGTTAAAAAAACAA+AGG + tig0022333:45539-45558 None:intergenic 20.0%
!!! CTTTGTTTTTTTAACAGAAA+TGG - tig0022333:45537-45556 Msa1399190:intron 20.0%
!! ATTTAGTTAAAATCAACATG+GGG + tig0022333:45736-45755 None:intergenic 20.0%
!! GAATTTAGTTAAAATCAACA+TGG + tig0022333:45738-45757 None:intergenic 20.0%
!!! TTGAAAATAAGCATTTTGTA+TGG - tig0022333:45884-45903 Msa1399190:intron 20.0%
!! TATAACCAACTCTAAATTTA+TGG - tig0022333:46136-46155 Msa1399190:intron 20.0%
!! TACACTAAAATTAAATTCCA+TGG - tig0022333:46178-46197 Msa1399190:intron 20.0%
!!! ATACACAAATCTTTTTAATG+AGG - tig0022333:46443-46462 Msa1399190:CDS 20.0%
!!! TAAAACTGTTTTTGAAATGT+TGG - tig0022333:46863-46882 Msa1399190:intron 20.0%
!!! AAAATAAAGCATTCAACATT+TGG + tig0022333:47460-47479 None:intergenic 20.0%
!! AGGTATAAATAAAATGATCA+AGG + tig0022333:47693-47712 None:intergenic 20.0%
!!! GATAATTCATTTTAACAAGA+CGG + tig0022333:48151-48170 None:intergenic 20.0%
!! GTCTAAAAACAATATCATAA+TGG + tig0022333:48319-48338 None:intergenic 20.0%
!! AGGATAACTTCAATAAAAAA+GGG + tig0022333:48640-48659 None:intergenic 20.0%
!! AAAAGAATAAAACATACTGA+AGG + tig0022333:48799-48818 None:intergenic 20.0%
!! AATATAAGTTGTGAAGAAAA+AGG + tig0022333:49040-49059 None:intergenic 20.0%
!! TGAGCATAAATATTTAAATG+CGG + tig0022333:49848-49867 None:intergenic 20.0%
!!! TTTTTTGTTTAAACTTACAG+TGG + tig0022333:50059-50078 None:intergenic 20.0%
!! AACAAAAAATAAGTTTGGTT+TGG - tig0022333:50070-50089 Msa1399190:intron 20.0%
!! TTCATATCACTCAAAAATAT+AGG + tig0022333:50302-50321 None:intergenic 20.0%
!! ATTATCTTTCTATAGTCATA+TGG - tig0022333:50493-50512 Msa1399190:intron 20.0%
!! TAAACCATATGATATTTATC+TGG - tig0022333:51120-51139 Msa1399190:five_prime_UTR 20.0%
!!! ATTTTGTTATCTGAAATAGA+TGG - tig0022333:51158-51177 Msa1399190:five_prime_UTR 20.0%
! AAAAGTGGGAAAAGTAATTA+AGG + tig0022333:41778-41797 None:intergenic 25.0%
! TGGGAAATATAAAGAAAAGT+GGG + tig0022333:41792-41811 None:intergenic 25.0%
! TTGGGAAATATAAAGAAAAG+TGG + tig0022333:41793-41812 None:intergenic 25.0%
! TTTCCAACTCCAAATTTATA+GGG - tig0022333:42300-42319 Msa1399190:intron 25.0%
! AGAATTGAGTAGTTGAAATT+TGG - tig0022333:42420-42439 Msa1399190:intron 25.0%
! TGAATCTATCTTAGAGATAT+AGG - tig0022333:42537-42556 Msa1399190:CDS 25.0%
! CAATTCTTTATTCCTTCATT+CGG + tig0022333:42639-42658 None:intergenic 25.0%
!!! AGAATTGTTGATTTTCTATG+TGG - tig0022333:43024-43043 Msa1399190:intron 25.0%
!!! GAATTGTTGATTTTCTATGT+GGG - tig0022333:43025-43044 Msa1399190:intron 25.0%
! TTGTAAAATGTAACACATGT+CGG - tig0022333:43107-43126 Msa1399190:intron 25.0%
! ACACATTTGATTAGATTTGT+GGG - tig0022333:43186-43205 Msa1399190:intron 25.0%
!!! AGTGAAGTTTTAGAATATTG+TGG - tig0022333:43320-43339 Msa1399190:intron 25.0%
! GTGTTGGAATTAACTTATTT+AGG - tig0022333:43363-43382 Msa1399190:intron 25.0%
! AATTTCCTTGATTATTGAAG+TGG - tig0022333:43493-43512 Msa1399190:intron 25.0%
! ATTTCCTTGATTATTGAAGT+GGG - tig0022333:43494-43513 Msa1399190:intron 25.0%
! AAAATTTCATCAATCCAATG+TGG + tig0022333:43782-43801 None:intergenic 25.0%
! ATTCTTATTACTGCGATATA+TGG + tig0022333:44088-44107 None:intergenic 25.0%
!! CAACGATTTTACAAATGAAA+TGG + tig0022333:44222-44241 None:intergenic 25.0%
!! ACATTCCAATTTTACATTTC+AGG - tig0022333:44396-44415 Msa1399190:intron 25.0%
! CAAAAACAAAAAAGAAGCTT+TGG - tig0022333:44821-44840 Msa1399190:CDS 25.0%
! AAAACAAAAAAGAAGCTTTG+GGG - tig0022333:44823-44842 Msa1399190:CDS 25.0%
! TAATTATGTTCAATTGCAGA+AGG - tig0022333:45026-45045 Msa1399190:intron 25.0%
! TACTCAGAAACTAAAGAAAA+TGG - tig0022333:45232-45251 Msa1399190:intron 25.0%
!! AGTATCATTTGAAATTGTTG+AGG + tig0022333:45269-45288 None:intergenic 25.0%
! TCAAAATGAATGAAACAAAC+AGG + tig0022333:45690-45709 None:intergenic 25.0%
!!! TTGTTTCATTCATTTTGACA+AGG - tig0022333:45692-45711 Msa1399190:intron 25.0%
!! GACAACTCTTTATTTCAAAA+TGG + tig0022333:45858-45877 None:intergenic 25.0%
! AATGACTATATGAAAACCAA+TGG + tig0022333:45962-45981 None:intergenic 25.0%
!! GTTGTGACTTAAAAGTATAA+AGG + tig0022333:46053-46072 None:intergenic 25.0%
!!! TTTTGCCTTTAAAAGTGTAA+AGG + tig0022333:46075-46094 None:intergenic 25.0%
!! AAACTCCATAAATTTAGAGT+TGG + tig0022333:46144-46163 None:intergenic 25.0%
! GATATGATATGATAATCAAG+CGG - tig0022333:46280-46299 Msa1399190:intron 25.0%
!! TGGCACAAAATTTTCAATTA+AGG + tig0022333:46415-46434 None:intergenic 25.0%
! AATACCTTAAAGTATAATCC+AGG + tig0022333:46579-46598 None:intergenic 25.0%
!!! ATACTTTTTTGTGACAAACT+AGG - tig0022333:46687-46706 Msa1399190:intron 25.0%
!!! TTGTCTAATGTGACTTTTTT+GGG + tig0022333:46786-46805 None:intergenic 25.0%
!! GGGTTAAATGTAAAGTTTTT+AGG + tig0022333:47018-47037 None:intergenic 25.0%
!! AAATAAACACTGACTATCAT+AGG - tig0022333:47283-47302 Msa1399190:intron 25.0%
!! AAAAACACTATTTTGTGATC+AGG - tig0022333:47318-47337 Msa1399190:intron 25.0%
! GATACAAGTAATAGACAAAT+GGG + tig0022333:47604-47623 None:intergenic 25.0%
! AGATACAAGTAATAGACAAA+TGG + tig0022333:47605-47624 None:intergenic 25.0%
!! GATGTATTTGTTTGTTACTT+TGG - tig0022333:47661-47680 Msa1399190:CDS 25.0%
!! ATAAATTTGTCCTTTGACTT+AGG - tig0022333:47843-47862 Msa1399190:CDS 25.0%
!! TAAATTTGTCCTTTGACTTA+GGG - tig0022333:47844-47863 Msa1399190:CDS 25.0%
! AGCTAATCATTATATTCTCT+AGG - tig0022333:47881-47900 Msa1399190:CDS 25.0%
! ACTAACTATTGTTATCATGT+AGG - tig0022333:47908-47927 Msa1399190:intron 25.0%
! CTAACTATTGTTATCATGTA+GGG - tig0022333:47909-47928 Msa1399190:intron 25.0%
! TGAAAAGAACAAGCAATTAA+TGG - tig0022333:48019-48038 Msa1399190:intron 25.0%
!! TTTTCCATTAATGTGAATCT+AGG + tig0022333:48074-48093 None:intergenic 25.0%
! CTTCAATAAAAAAGGGTTAA+AGG + tig0022333:48633-48652 None:intergenic 25.0%
! GAGGATAACTTCAATAAAAA+AGG + tig0022333:48641-48660 None:intergenic 25.0%
! TTTATTAGATTAAGCGAAAG+TGG - tig0022333:48969-48988 Msa1399190:intron 25.0%
!!! CACAACTTATATTTTAGAAG+TGG - tig0022333:49047-49066 Msa1399190:CDS 25.0%
! ATAATATTACCAAGAGAATG+TGG + tig0022333:49136-49155 None:intergenic 25.0%
!! ACATTCTCTTGGTAATATTA+TGG - tig0022333:49135-49154 Msa1399190:intron 25.0%
!! TAAACATATACCTTCCTTTT+GGG + tig0022333:49400-49419 None:intergenic 25.0%
!! ATAAACATATACCTTCCTTT+TGG + tig0022333:49401-49420 None:intergenic 25.0%
! CATTCTATAGCAATAAAACT+GGG + tig0022333:49442-49461 None:intergenic 25.0%
! ACATTCTATAGCAATAAAAC+TGG + tig0022333:49443-49462 None:intergenic 25.0%
! TTATTGCTATAGAATGTTTG+AGG - tig0022333:49446-49465 Msa1399190:intron 25.0%
! AAATTCAAGTGAGACATTAT+TGG - tig0022333:49514-49533 Msa1399190:intron 25.0%
! AATTCAAGTGAGACATTATT+GGG - tig0022333:49515-49534 Msa1399190:intron 25.0%
! CTAAATATACAGGCAAAAAT+GGG + tig0022333:49759-49778 None:intergenic 25.0%
! TCTAAATATACAGGCAAAAA+TGG + tig0022333:49760-49779 None:intergenic 25.0%
! ACAAAAGAAATAGCATAGTT+GGG + tig0022333:50023-50042 None:intergenic 25.0%
!! ATTTTCAAAATGCTTTGTGT+TGG - tig0022333:50143-50162 Msa1399190:intron 25.0%
!!! CTTTGTGTTGGTTTAATTTT+AGG - tig0022333:50155-50174 Msa1399190:intron 25.0%
! AATCAGGTATATCTTAACTT+TGG - tig0022333:50241-50260 Msa1399190:intron 25.0%
!!! GTATATCTTAACTTTGGTTT+TGG - tig0022333:50247-50266 Msa1399190:intron 25.0%
!! ATAAGGGATGTCATATTTTA+AGG + tig0022333:50338-50357 None:intergenic 25.0%
! TCATATAGACAATCAAAATC+TGG + tig0022333:50550-50569 None:intergenic 25.0%
! CAGTGAATATATTGAACTAT+TGG + tig0022333:50604-50623 None:intergenic 25.0%
!! GTTTTATAAATTGTTATGCC+AGG - tig0022333:50776-50795 Msa1399190:CDS 25.0%
! ACTTCCAGATAAATATCATA+TGG + tig0022333:51127-51146 None:intergenic 25.0%
!!! CGCTTAAATTTTGAGATAGT+GGG + tig0022333:41750-41769 None:intergenic 30.0%
TGGGAAAAGTAATTAAGGAA+AGG + tig0022333:41773-41792 None:intergenic 30.0%
GTTTCCAACTCCAAATTTAT+AGG - tig0022333:42299-42318 Msa1399190:intron 30.0%
TTCCAACTCCAAATTTATAG+GGG - tig0022333:42301-42320 Msa1399190:intron 30.0%
TCATTCGGTTTCATATCAAA+TGG + tig0022333:42624-42643 None:intergenic 30.0%
TTTGATATGAAACCGAATGA+AGG - tig0022333:42624-42643 Msa1399190:intron 30.0%
! AACACTTTGATTAGAAGTGT+CGG - tig0022333:42787-42806 Msa1399190:intron 30.0%
CACACATTTGATTAGATTTG+TGG - tig0022333:43185-43204 Msa1399190:intron 30.0%
CTAAAACTTCACTTGAAAGT+TGG + tig0022333:43313-43332 None:intergenic 30.0%
!! ATATTGTGGTGTTACTGTAA+TGG - tig0022333:43334-43353 Msa1399190:intron 30.0%
TTAACCCACTTCAATAATCA+AGG + tig0022333:43501-43520 None:intergenic 30.0%
TGACTAAGCTATTGAATTCT+GGG + tig0022333:43539-43558 None:intergenic 30.0%
AAGTGTGTAAGACATAATTG+TGG + tig0022333:44322-44341 None:intergenic 30.0%
GATGACCTGAAATGTAAAAT+TGG + tig0022333:44404-44423 None:intergenic 30.0%
! TCTGAGAAAAATACACGTTT+TGG + tig0022333:44451-44470 None:intergenic 30.0%
! TGTATTTTTCTCAGAAATCC+AGG - tig0022333:44456-44475 Msa1399190:intron 30.0%
TTCTTAACAAGACAATCCAA+TGG + tig0022333:44490-44509 None:intergenic 30.0%
! GTGTACCAGTTTTTGTAATT+AGG + tig0022333:44674-44693 None:intergenic 30.0%
TAGTAAGTAATCGATGTATG+TGG - tig0022333:44723-44742 Msa1399190:CDS 30.0%
AGTTTAACAAATGTGGAGTA+GGG + tig0022333:45117-45136 None:intergenic 30.0%
TAGTTTAACAAATGTGGAGT+AGG + tig0022333:45118-45137 None:intergenic 30.0%
! CACATTTGTTAAACTACCAT+CGG - tig0022333:45122-45141 Msa1399190:intron 30.0%
! ACATTTGTTAAACTACCATC+GGG - tig0022333:45123-45142 Msa1399190:intron 30.0%
AAAGATAAAATTCAACCCGA+TGG + tig0022333:45141-45160 None:intergenic 30.0%
!!! ATCGGGTTGAATTTTATCTT+TGG - tig0022333:45140-45159 Msa1399190:intron 30.0%
! ACATTTTTAACACAGAACCT+TGG - tig0022333:45768-45787 Msa1399190:intron 30.0%
!! ATAACTAAGAGCATTTCCAT+TGG - tig0022333:45943-45962 Msa1399190:intron 30.0%
! CACAACCTTTACACTTTTAA+AGG - tig0022333:46067-46086 Msa1399190:intron 30.0%
! TTTTAATGAGGAAGATGAAG+AGG - tig0022333:46455-46474 Msa1399190:CDS 30.0%
TGATGTACGTTATGATGATA+AGG - tig0022333:46545-46564 Msa1399190:CDS 30.0%
AATGTTCAAAATGAGTGTCT+AGG + tig0022333:46665-46684 None:intergenic 30.0%
ACAATTCTGATAAAGACACT+TGG - tig0022333:46725-46744 Msa1399190:intron 30.0%
CAATTCTGATAAAGACACTT+GGG - tig0022333:46726-46745 Msa1399190:intron 30.0%
!!! GTTGTCTAATGTGACTTTTT+TGG + tig0022333:46787-46806 None:intergenic 30.0%
! TGAAGAGATGATACTGTTTT+TGG - tig0022333:46833-46852 Msa1399190:intron 30.0%
! ACACAATTTAAAGTTGACTC+TGG - tig0022333:46936-46955 Msa1399190:intron 30.0%
!!! GTGCTATTTTCTGATATCAT+AGG - tig0022333:47227-47246 Msa1399190:intron 30.0%
AACAAATACATCAAGACACA+AGG + tig0022333:47653-47672 None:intergenic 30.0%
! GATTAGCATAGTTTCTGAAA+CGG + tig0022333:47989-48008 None:intergenic 30.0%
CAAGCAATTAATGGTCTTTA+TGG - tig0022333:48028-48047 Msa1399190:intron 30.0%
TGGATATTGTTCAATACCTT+CGG - tig0022333:48048-48067 Msa1399190:intron 30.0%
! GATCTTCTTAGATTTTCAGA+AGG - tig0022333:48101-48120 Msa1399190:intron 30.0%
AATGAATTATCAAAGTCGGT+TGG - tig0022333:48160-48179 Msa1399190:intron 30.0%
ATGAATTATCAAAGTCGGTT+GGG - tig0022333:48161-48180 Msa1399190:intron 30.0%
! ATTAGTTTAATGCGAGTACA+TGG + tig0022333:48341-48360 None:intergenic 30.0%
TCTAAACAAGCATTTGTTCT+TGG + tig0022333:48439-48458 None:intergenic 30.0%
CTTTCTATAACATCATGAGT+TGG + tig0022333:48571-48590 None:intergenic 30.0%
ACTCATGATGTTATAGAAAG+AGG - tig0022333:48571-48590 Msa1399190:intron 30.0%
TCTTCTGTTCCTTATATACA+CGG + tig0022333:48663-48682 None:intergenic 30.0%
GAACAGAAGATTTGATATGA+AGG - tig0022333:48673-48692 Msa1399190:CDS 30.0%
AGGATGTTAATAATGCTTGT+AGG - tig0022333:48693-48712 Msa1399190:CDS 30.0%
GGATGTTAATAATGCTTGTA+GGG - tig0022333:48694-48713 Msa1399190:CDS 30.0%
!!! AACTTTTGAAACTCTGTCAA+AGG + tig0022333:48951-48970 None:intergenic 30.0%
TGAAATTAGAGCTCTTTAGA+TGG - tig0022333:49079-49098 Msa1399190:CDS 30.0%
! AAACATATACCTTCCTTTTG+GGG + tig0022333:49399-49418 None:intergenic 30.0%
CTGGGTCAAATAAAACATAA+AGG + tig0022333:49424-49443 None:intergenic 30.0%
TCTCTTCACTCTAAATATAC+AGG + tig0022333:49769-49788 None:intergenic 30.0%
CTTCATAAATCTGAATGTAC+AGG + tig0022333:49885-49904 None:intergenic 30.0%
CACAAAAGAAATAGCATAGT+TGG + tig0022333:50024-50043 None:intergenic 30.0%
!! AGTTTGGTTTGGTATTCTAA+AGG - tig0022333:50081-50100 Msa1399190:intron 30.0%
! TTAATTTTAGGCCTTTTGCT+CGG - tig0022333:50167-50186 Msa1399190:intron 30.0%
TTAAGATATACCTGATTGTG+GGG + tig0022333:50238-50257 None:intergenic 30.0%
GTTAAGATATACCTGATTGT+GGG + tig0022333:50239-50258 None:intergenic 30.0%
AGTTAAGATATACCTGATTG+TGG + tig0022333:50240-50259 None:intergenic 30.0%
! CCAGATTTTTATAAGCTATG+CGG - tig0022333:50438-50457 Msa1399190:intron 30.0%
ACTCTCAATAGACAAATTTG+AGG - tig0022333:51010-51029 Msa1399190:CDS 30.0%
CTCTCAATAGACAAATTTGA+GGG - tig0022333:51011-51030 Msa1399190:CDS 30.0%
!!! GCGCTTAAATTTTGAGATAG+TGG + tig0022333:41751-41770 None:intergenic 35.0%
TCGTAGTAGATCTAGGAAAA+TGG - tig0022333:42103-42122 Msa1399190:CDS 35.0%
ATCGAAACAGTTTCACTCTT+TGG + tig0022333:42254-42273 None:intergenic 35.0%
ACTGTTTCGATGAATGTTGA+CGG - tig0022333:42263-42282 Msa1399190:intron 35.0%
! ATCCCCTATAAATTTGGAGT+TGG + tig0022333:42306-42325 None:intergenic 35.0%
AATCGGATCCCCTATAAATT+TGG + tig0022333:42312-42331 None:intergenic 35.0%
!! ACACTTTGATTAGAAGTGTC+GGG - tig0022333:42788-42807 Msa1399190:intron 35.0%
TTACATTCACATGTTGATGC+CGG - tig0022333:43077-43096 Msa1399190:intron 35.0%
GTGACTAAGCTATTGAATTC+TGG + tig0022333:43540-43559 None:intergenic 35.0%
TGACTAAGCTATTGCATTCT+GGG + tig0022333:43589-43608 None:intergenic 35.0%
AATCTCGTTCAAGATCAATC+AGG - tig0022333:43703-43722 Msa1399190:intron 35.0%
AGATATCAGCATATCCACAT+TGG - tig0022333:43765-43784 Msa1399190:intron 35.0%
CTGCGATATATGGAAATATG+AGG + tig0022333:44078-44097 None:intergenic 35.0%
! TTTCAGGTCATCAAACAACT+AGG - tig0022333:44412-44431 Msa1399190:intron 35.0%
CGATGGTAGTTTAACAAATG+TGG + tig0022333:45124-45143 None:intergenic 35.0%
TGAAGTGAATGCAAAATCTG+AGG - tig0022333:45288-45307 Msa1399190:intron 35.0%
AAATCTAGCAACTTCATCTG+TGG + tig0022333:45361-45380 None:intergenic 35.0%
AAGTTGCTAGATTTGTACTC+TGG - tig0022333:45367-45386 Msa1399190:intron 35.0%
ATGTCAACAGGATTATGTCA+AGG - tig0022333:45400-45419 Msa1399190:intron 35.0%
TGTCAACAGGATTATGTCAA+GGG - tig0022333:45401-45420 Msa1399190:intron 35.0%
ACAGAGAAAAGTAGAACTCA+CGG + tig0022333:45455-45474 None:intergenic 35.0%
!!! TTTTTAACAGAAATGGGCTG+TGG - tig0022333:45544-45563 Msa1399190:intron 35.0%
TCTGACAAGCATCTTTGTTA+AGG + tig0022333:45571-45590 None:intergenic 35.0%
TTTCTGGATGGTTGAGTTTA+AGG + tig0022333:45595-45614 None:intergenic 35.0%
TATCCAATTACCTCAGTTTC+TGG + tig0022333:45611-45630 None:intergenic 35.0%
! TTTTTAACACAGAACCTTGG+TGG - tig0022333:45771-45790 Msa1399190:intron 35.0%
ATGATAATCAAGCGGTTTCA+AGG - tig0022333:46288-46307 Msa1399190:intron 35.0%
ACACTTGCACATCATAAATC+AGG - tig0022333:46320-46339 Msa1399190:intron 35.0%
! TGAAAATTTTGTGCCACATG+AGG - tig0022333:46419-46438 Msa1399190:CDS 35.0%
AGATTTGTGTATTCCTCATG+TGG + tig0022333:46435-46454 None:intergenic 35.0%
CGTTATGATGATAAGGAAAC+TGG - tig0022333:46552-46571 Msa1399190:CDS 35.0%
TGGACCTGGATTATACTTTA+AGG - tig0022333:46572-46591 Msa1399190:CDS 35.0%
CAAAATGAGTGTCTAGGAAA+AGG + tig0022333:46659-46678 None:intergenic 35.0%
TTGTGACAAACTAGGTTTCT+TGG - tig0022333:46695-46714 Msa1399190:intron 35.0%
ACAAACTAGGTTTCTTGGAA+GGG - tig0022333:46700-46719 Msa1399190:intron 35.0%
! CTAATAGTTTGCAAAAGTGG+TGG + tig0022333:47092-47111 None:intergenic 35.0%
! ACGCTAATAGTTTGCAAAAG+TGG + tig0022333:47095-47114 None:intergenic 35.0%
CAAACTATTAGCGTTGTCAT+TGG - tig0022333:47101-47120 Msa1399190:intron 35.0%
ACACAAGGTTCATGAGATAT+GGG + tig0022333:47638-47657 None:intergenic 35.0%
TAACTGCAAGGAAAGGATTA+AGG - tig0022333:47722-47741 Msa1399190:intron 35.0%
AATTCGAAAATTACCGGCAA+TGG + tig0022333:47783-47802 None:intergenic 35.0%
CAGAAACTATGCTAATCCTT+TGG - tig0022333:47992-48011 Msa1399190:intron 35.0%
! TTGTTCTTTTCATCGTCCAA+AGG + tig0022333:48011-48030 None:intergenic 35.0%
! AGATTTTCAGAAGGCTTTCT+AGG - tig0022333:48110-48129 Msa1399190:intron 35.0%
! TTTCTAGGAAGGTATGCATT+GGG - tig0022333:48125-48144 Msa1399190:intron 35.0%
ACTAGTAGATATACCTCTGA+AGG + tig0022333:48254-48273 None:intergenic 35.0%
CTTGTTTAGATTAGCATGAG+AGG - tig0022333:48449-48468 Msa1399190:CDS 35.0%
!! ATAACATCATGAGTTGGTAG+TGG + tig0022333:48565-48584 None:intergenic 35.0%
AGTTATCCTCCGTGTATATA+AGG - tig0022333:48651-48670 Msa1399190:CDS 35.0%
TAATGAAAGTCGTGATGACA+TGG - tig0022333:48911-48930 Msa1399190:intron 35.0%
!!! TTTTGAAACTCTGTCAAAGG+AGG + tig0022333:48948-48967 None:intergenic 35.0%
ATTATCCATCCACATTCTCT+TGG - tig0022333:49124-49143 Msa1399190:intron 35.0%
TATTACCAAGAGAATGTGGA+TGG + tig0022333:49132-49151 None:intergenic 35.0%
! TTTTGTGAATCTTAGTGTGC+CGG - tig0022333:49540-49559 Msa1399190:intron 35.0%
ACAATGACTGCTTATGTGTT+AGG - tig0022333:49601-49620 Msa1399190:intron 35.0%
CAATGACTGCTTATGTGTTA+GGG - tig0022333:49602-49621 Msa1399190:intron 35.0%
AGTTGAATTGAATCCTGATG+TGG - tig0022333:49670-49689 Msa1399190:intron 35.0%
! AGTAAAACGTTTGTTACCAG+TGG + tig0022333:49722-49741 None:intergenic 35.0%
!!! TATGCTATTTCTTTTGTGCG+TGG - tig0022333:50026-50045 Msa1399190:intron 35.0%
! TAATCTAGCATTTTCGCGAA+CGG + tig0022333:50409-50428 None:intergenic 35.0%
CCGCATAGCTTATAAAAATC+TGG + tig0022333:50441-50460 None:intergenic 35.0%
ACTAACAATCATCGTCACAT+GGG + tig0022333:50702-50721 None:intergenic 35.0%
AACTAACAATCATCGTCACA+TGG + tig0022333:50703-50722 None:intergenic 35.0%
TATGCCAGGTACATTCAAAT+TGG - tig0022333:50790-50809 Msa1399190:CDS 35.0%
ATGCCAGGTACATTCAAATT+GGG - tig0022333:50791-50810 Msa1399190:CDS 35.0%
ATTCCCAATTTGAATGTACC+TGG + tig0022333:50797-50816 None:intergenic 35.0%
! TTTTTCCTGGGAAAATGATC+AGG + tig0022333:50910-50929 None:intergenic 35.0%
!!! GAAGCTTGTTCTTTTTTCCT+GGG + tig0022333:50922-50941 None:intergenic 35.0%
!!! AGAAGCTTGTTCTTTTTTCC+TGG + tig0022333:50923-50942 None:intergenic 35.0%
AAAAGAACAAGCTTCTACTG+CGG - tig0022333:50927-50946 Msa1399190:CDS 35.0%
ATTGTGAGAGAGAGAGAGTA+GGG + tig0022333:41820-41839 None:intergenic 40.0%
TGATGAAAATGGCTGAGAAG+AGG + tig0022333:41875-41894 None:intergenic 40.0%
!! CTTCTCAGCCATTTTCATCA+TGG - tig0022333:41875-41894 Msa1399190:three_prime_UTR 40.0%
AGGTCAAAAACTACCATCTC+CGG - tig0022333:41915-41934 Msa1399190:three_prime_UTR 40.0%
!! ATTAACAGTGTCGACTGAAG+AGG + tig0022333:42048-42067 None:intergenic 40.0%
CTTACCAGATGTTGAATCAG+CGG + tig0022333:42180-42199 None:intergenic 40.0%
CAAGAAGCCTAAGAAGAAAG+CGG - tig0022333:42205-42224 Msa1399190:intron 40.0%
TTCAGATCCGCTTTCTTCTT+AGG + tig0022333:42215-42234 None:intergenic 40.0%
ATCAAATGTGTGAGCTCATC+CGG + tig0022333:43177-43196 None:intergenic 40.0%
!!! GGTGTTACTGTAATGGCTTT+TGG - tig0022333:43341-43360 Msa1399190:intron 40.0%
!! ACTGTAATGGCTTTTGGTGT+TGG - tig0022333:43347-43366 Msa1399190:intron 40.0%
GTGACTAAGCTATTGCATTC+TGG + tig0022333:43590-43609 None:intergenic 40.0%
TCGTTCAAGATCAATCAGGT+AGG - tig0022333:43707-43726 Msa1399190:intron 40.0%
TATGCACAACAGTGATGAAG+AGG - tig0022333:43833-43852 Msa1399190:intron 40.0%
AGCTAGATGTCACTATACAG+AGG - tig0022333:43866-43885 Msa1399190:intron 40.0%
! TTATGATGATGCGTATGTGC+AGG - tig0022333:43920-43939 Msa1399190:intron 40.0%
! GAGATGTTTGAAGCAGTTGA+TGG - tig0022333:44241-44260 Msa1399190:intron 40.0%
!! ATGTTTGAAGCAGTTGATGG+AGG - tig0022333:44244-44263 Msa1399190:intron 40.0%
GACTGTATTTCACAGCACAA+TGG - tig0022333:44266-44285 Msa1399190:intron 40.0%
! TGGTTGACTTACTGTGTCAT+TGG + tig0022333:44302-44321 None:intergenic 40.0%
AATCCAGGATGACAATCCAT+TGG - tig0022333:44471-44490 Msa1399190:intron 40.0%
!! AATCCAATGGATTGTCATCC+TGG + tig0022333:44477-44496 None:intergenic 40.0%
! CTTGAGCTCTAATCTGAGAA+TGG + tig0022333:44518-44537 None:intergenic 40.0%
CATTCTCAGATTAGAGCTCA+AGG - tig0022333:44516-44535 Msa1399190:intron 40.0%
GATTAGAGCTCAAGGTATGT+TGG - tig0022333:44524-44543 Msa1399190:intron 40.0%
!! GAAGGATTTTGATGCAACGA+AGG - tig0022333:45044-45063 Msa1399190:intron 40.0%
GTATCGCAGTAATAATCGCA+AGG + tig0022333:45081-45100 None:intergenic 40.0%
CTAGATTTGTACTCTGGTTG+TGG - tig0022333:45373-45392 Msa1399190:intron 40.0%
GTCAACAGGATTATGTCAAG+GGG - tig0022333:45402-45421 Msa1399190:intron 40.0%
TCAACAGGATTATGTCAAGG+GGG - tig0022333:45403-45422 Msa1399190:intron 40.0%
! CAATTACCTCAGTTTCTGGA+TGG + tig0022333:45607-45626 None:intergenic 40.0%
CATCCAGAAACTGAGGTAAT+TGG - tig0022333:45605-45624 Msa1399190:intron 40.0%
CATACATGCAAACATGACTG+AGG + tig0022333:45638-45657 None:intergenic 40.0%
AACAGGACATACATGCATAC+AGG + tig0022333:45673-45692 None:intergenic 40.0%
! ACTTTTCCTCTCGTTGTTGA+AGG - tig0022333:46362-46381 Msa1399190:CDS 40.0%
TAATGAGGAAGATGAAGAGG+AGG - tig0022333:46458-46477 Msa1399190:CDS 40.0%
GACAAACTAGGTTTCTTGGA+AGG - tig0022333:46699-46718 Msa1399190:intron 40.0%
TTAGCGTTGTCATTGGATAG+TGG - tig0022333:47108-47127 Msa1399190:intron 40.0%
TAGCGCTAAAGCATAGCAAA+AGG - tig0022333:47136-47155 Msa1399190:intron 40.0%
AGACAAATGGGAATCTCAAC+AGG + tig0022333:47592-47611 None:intergenic 40.0%
GACACAAGGTTCATGAGATA+TGG + tig0022333:47639-47658 None:intergenic 40.0%
TCTTCACTTCCCTAAGTCAA+AGG + tig0022333:47856-47875 None:intergenic 40.0%
TGTTATCATGTAGGGACATG+TGG - tig0022333:47917-47936 Msa1399190:intron 40.0%
TTAATGTGAATCTAGGCCGA+AGG + tig0022333:48067-48086 None:intergenic 40.0%
TCGGCCTAGATTCACATTAA+TGG - tig0022333:48067-48086 Msa1399190:intron 40.0%
! TTTCAGAAGGCTTTCTAGGA+AGG - tig0022333:48114-48133 Msa1399190:intron 40.0%
! CTTTCTAGGAAGGTATGCAT+TGG - tig0022333:48124-48143 Msa1399190:intron 40.0%
! TTCGCCTTCGTGTCTTTTTA+TGG - tig0022333:48219-48238 Msa1399190:intron 40.0%
! TCGCCTTCGTGTCTTTTTAT+GGG - tig0022333:48220-48239 Msa1399190:intron 40.0%
! TAGATATACCTCTGAAGGTG+CGG + tig0022333:48249-48268 None:intergenic 40.0%
!! TGAGTTGGTAGTGGAAATTG+AGG + tig0022333:48556-48575 None:intergenic 40.0%
TCTGTTCCTTATATACACGG+AGG + tig0022333:48660-48679 None:intergenic 40.0%
ATGCTTGTAGGGTTGTTTAG+TGG - tig0022333:48705-48724 Msa1399190:CDS 40.0%
!!! CACGAGTTTTTTTTGCAGCT+GGG + tig0022333:48752-48771 None:intergenic 40.0%
!!! ACACGAGTTTTTTTTGCAGC+TGG + tig0022333:48753-48772 None:intergenic 40.0%
AGTCGTGATGACATGGAATA+TGG - tig0022333:48918-48937 Msa1399190:intron 40.0%
AATGCTGCAAGAGGTTTGAA+TGG - tig0022333:49168-49187 Msa1399190:intron 40.0%
ATGCTGCAAGAGGTTTGAAT+GGG - tig0022333:49169-49188 Msa1399190:intron 40.0%
TATGCAACATGCAGAGATGT+TGG - tig0022333:49279-49298 Msa1399190:intron 40.0%
ATGCAACATGCAGAGATGTT+GGG - tig0022333:49280-49299 Msa1399190:intron 40.0%
TTTGTGAATCTTAGTGTGCC+GGG - tig0022333:49541-49560 Msa1399190:intron 40.0%
GTTAACACACTCTAACATCC+CGG + tig0022333:49562-49581 None:intergenic 40.0%
ATTTACCGTGTGTTCGTATG+CGG - tig0022333:49639-49658 Msa1399190:intron 40.0%
AATAATTCACGCTCCACATC+AGG + tig0022333:49686-49705 None:intergenic 40.0%
CAGGCAAAAATGGGATCAAA+AGG + tig0022333:49750-49769 None:intergenic 40.0%
CGCGAAAATGCTAGATTACA+AGG - tig0022333:50411-50430 Msa1399190:intron 40.0%
TATGCGGATCTGTCAAAGAA+AGG - tig0022333:50454-50473 Msa1399190:intron 40.0%
ATCATCCAACCACAAACTCA+AGG + tig0022333:50979-50998 None:intergenic 40.0%
TTGTGAGAGAGAGAGAGTAG+GGG + tig0022333:41819-41838 None:intergenic 45.0%
GATTGTGAGAGAGAGAGAGT+AGG + tig0022333:41821-41840 None:intergenic 45.0%
!! TCAGCCATTTTCATCATGGC+TGG - tig0022333:41879-41898 Msa1399190:three_prime_UTR 45.0%
!! CAGCCATTTTCATCATGGCT+GGG - tig0022333:41880-41899 Msa1399190:three_prime_UTR 45.0%
CTTCCCAGCCATGATGAAAA+TGG + tig0022333:41886-41905 None:intergenic 45.0%
!! GTTACCGCTGATTCTGTTTC+CGG - tig0022333:41945-41964 Msa1399190:three_prime_UTR 45.0%
TGAATCGGCGGTAACAGAAA+CGG + tig0022333:41976-41995 None:intergenic 45.0%
AGATTTACGAACAGTGCTGC+CGG + tig0022333:42003-42022 None:intergenic 45.0%
GCAGCACTGTTCGTAAATCT+AGG - tig0022333:42003-42022 Msa1399190:CDS 45.0%
AGTCTCACCAGTAGCTGAAT+CGG + tig0022333:42084-42103 None:intergenic 45.0%
GTGAGACTCGTAGTAGATCT+AGG - tig0022333:42096-42115 Msa1399190:CDS 45.0%
AAGAAAGCGGATCTGAATCC+TGG - tig0022333:42218-42237 Msa1399190:intron 45.0%
GTTTCGATGAATGTTGACGG+CGG - tig0022333:42266-42285 Msa1399190:intron 45.0%
TTAGCCTCCTCTATCGGAAT+CGG + tig0022333:42329-42348 None:intergenic 45.0%
ACCTTCTCCTGATACCGTTT+CGG + tig0022333:42362-42381 None:intergenic 45.0%
CATTGACATGTGCTTGACAC+CGG - tig0022333:43155-43174 Msa1399190:intron 45.0%
! ATGTCACTATACAGAGGCAC+AGG - tig0022333:43872-43891 Msa1399190:intron 45.0%
! TATACAGAGGCACAGGTTGA+TGG - tig0022333:43879-43898 Msa1399190:intron 45.0%
!! ATACAGAGGCACAGGTTGAT+GGG - tig0022333:43880-43899 Msa1399190:intron 45.0%
! TTTTTGCACACATGGCTGCA+AGG - tig0022333:44138-44157 Msa1399190:intron 45.0%
! TTTTGCACACATGGCTGCAA+GGG - tig0022333:44139-44158 Msa1399190:intron 45.0%
TCGCAGTAATAATCGCAAGG+TGG + tig0022333:45078-45097 None:intergenic 45.0%
GATTTGTACTCTGGTTGTGG+AGG - tig0022333:45376-45395 Msa1399190:intron 45.0%
CAACAGGATTATGTCAAGGG+GGG - tig0022333:45404-45423 Msa1399190:intron 45.0%
ACTCAACCATCCAGAAACTG+AGG - tig0022333:45598-45617 Msa1399190:intron 45.0%
TTAACACAGAACCTTGGTGG+TGG - tig0022333:45774-45793 Msa1399190:intron 45.0%
GATTATCACTACCACCACCA+AGG + tig0022333:45788-45807 None:intergenic 45.0%
GATGATAAGGAAACTGGACC+TGG - tig0022333:46558-46577 Msa1399190:CDS 45.0%
GCTGACCTCAAACCAGTAAT+GGG + tig0022333:46754-46773 None:intergenic 45.0%
AGCTGACCTCAAACCAGTAA+TGG + tig0022333:46755-46774 None:intergenic 45.0%
GCACTGCAATAGCAGCTATT+TGG + tig0022333:47211-47230 None:intergenic 45.0%
CCTTGCAGTTACTGATGCAT+AGG + tig0022333:47713-47732 None:intergenic 45.0%
CCTATGCATCAGTAACTGCA+AGG - tig0022333:47710-47729 Msa1399190:intron 45.0%
GCATCAGTAACTGCAAGGAA+AGG - tig0022333:47715-47734 Msa1399190:intron 45.0%
ATTAAGGACTTCGTCACTCG+CGG - tig0022333:47738-47757 Msa1399190:intron 45.0%
GTCAAGCATCTTACCATTGC+CGG - tig0022333:47767-47786 Msa1399190:intron 45.0%
GGACATGTGGATGTAGTATG+TGG - tig0022333:47930-47949 Msa1399190:intron 45.0%
CATGTGGATGTAGTATGTGG+CGG - tig0022333:47933-47952 Msa1399190:intron 45.0%
AAGACACGAAGGCGAAATTG+AGG + tig0022333:48215-48234 None:intergenic 45.0%
! CGCCTTCGTGTCTTTTTATG+GGG - tig0022333:48221-48240 Msa1399190:intron 45.0%
! GCCTTCGTGTCTTTTTATGG+GGG - tig0022333:48222-48241 Msa1399190:intron 45.0%
! CCTTCGTGTCTTTTTATGGG+GGG - tig0022333:48223-48242 Msa1399190:intron 45.0%
AGAAAGAGGTTCTGTACCTG+TGG - tig0022333:48585-48604 Msa1399190:intron 45.0%
TTCTGTACCTGTGGAGTTTG+AGG - tig0022333:48594-48613 Msa1399190:intron 45.0%
ACACATACCTCAAACTCCAC+AGG + tig0022333:48604-48623 None:intergenic 45.0%
TGTTTAGTGGCCTATAGCGA+AGG - tig0022333:48718-48737 Msa1399190:CDS 45.0%
CGTGATGACATGGAATATGG+CGG - tig0022333:48921-48940 Msa1399190:intron 45.0%
TTGCTCAAGAATGCTGCAAG+AGG - tig0022333:49159-49178 Msa1399190:intron 45.0%
TGCTGCAAGAGGTTTGAATG+GGG - tig0022333:49170-49189 Msa1399190:intron 45.0%
AGTCCCTGCTTCATGATCAT+CGG - tig0022333:49329-49348 Msa1399190:intron 45.0%
AGACCGATGATCATGAAGCA+GGG + tig0022333:49335-49354 None:intergenic 45.0%
AAGACCGATGATCATGAAGC+AGG + tig0022333:49336-49355 None:intergenic 45.0%
ATGTCGAATCCCCAAAAGGA+AGG - tig0022333:49387-49406 Msa1399190:intron 45.0%
TTGTTCCGCATACGAACACA+CGG + tig0022333:49647-49666 None:intergenic 45.0%
GAGCGTGAATTATTGCCTTC+AGG - tig0022333:49692-49711 Msa1399190:intron 45.0%
ATTGCCTTCAGGAAAACCAC+TGG - tig0022333:49703-49722 Msa1399190:intron 45.0%
! GTTACCAGTGGTTTTCCTGA+AGG + tig0022333:49710-49729 None:intergenic 45.0%
! TTAGGCCTTTTGCTCGGATA+TGG - tig0022333:50173-50192 Msa1399190:intron 45.0%
TCTGGTCTAGTGACAACAGT+AGG + tig0022333:50214-50233 None:intergenic 45.0%
TATACCTGATTGTGGGGTTC+TGG + tig0022333:50232-50251 None:intergenic 45.0%
GATAGCACTCTATCTTGCTC+TGG + tig0022333:50387-50406 None:intergenic 45.0%
! AATGCAGTTGCTGTTCCAGT+TGG - tig0022333:50814-50833 Msa1399190:CDS 45.0%
!! CGTGCTCTAGGATATTGTCT+TGG - tig0022333:50838-50857 Msa1399190:CDS 45.0%
TGATCAGGTAGCGTGTACAA+AGG + tig0022333:50895-50914 None:intergenic 45.0%
CATACTGCACCTTGAGTTTG+TGG - tig0022333:50967-50986 Msa1399190:CDS 45.0%
!!! GAAATTTTTTAATATTTTAT+TGG - tig0022333:43794-43813 Msa1399190:intron 5.0%
!!! TATATTTTCTTTTAATATTT+AGG - tig0022333:44180-44199 Msa1399190:CDS 5.0%
!!! ATATTTTCTTTTAATATTTA+GGG - tig0022333:44181-44200 Msa1399190:CDS 5.0%
!! TATAAATTAAATAATAACAT+AGG + tig0022333:50119-50138 None:intergenic 5.0%
TGTGAGAGAGAGAGAGTAGG+GGG + tig0022333:41818-41837 None:intergenic 50.0%
GCTGAGAAGAGGATGTGAAG+AGG + tig0022333:41864-41883 None:intergenic 50.0%
! TGGCTGGGAAGCGTAAATCT+AGG - tig0022333:41895-41914 Msa1399190:three_prime_UTR 50.0%
ATCAGCGGTAACTGCGTTAC+CGG + tig0022333:41937-41956 None:intergenic 50.0%
ATCGCCGGAAACAGAATCAG+CGG + tig0022333:41952-41971 None:intergenic 50.0%
!! GTTACCGCCGATTCAACTTC+CGG - tig0022333:41981-42000 Msa1399190:CDS 50.0%
AGTGCTGCCGGAAGTTGAAT+CGG + tig0022333:41991-42010 None:intergenic 50.0%
ATCACTGGAAGCAGAAGAGG+TGG + tig0022333:42144-42163 None:intergenic 50.0%
AGCATCACTGGAAGCAGAAG+AGG + tig0022333:42147-42166 None:intergenic 50.0%
GGAGACATTCACAGCATCAC+TGG + tig0022333:42159-42178 None:intergenic 50.0%
!! GTCTCCGCTGATTCAACATC+TGG - tig0022333:42173-42192 Msa1399190:intron 50.0%
AAAGCGGATCTGAATCCTGG+AGG - tig0022333:42221-42240 Msa1399190:intron 50.0%
GGATCTGAATCCTGGAGGAA+AGG - tig0022333:42226-42245 Msa1399190:intron 50.0%
!! TACAGAGGCACAGGTTGATG+GGG - tig0022333:43881-43900 Msa1399190:intron 50.0%
ATGCGTATGTGCAGGTGAGT+TGG - tig0022333:43928-43947 Msa1399190:intron 50.0%
GGTTGTGGAGGAATGTCAAC+AGG - tig0022333:45388-45407 Msa1399190:intron 50.0%
! TGTCAAGGGGGGATTTTGTC+TGG - tig0022333:45415-45434 Msa1399190:intron 50.0%
TCCTCTCGTTGTTGAAGGAG+TGG - tig0022333:46367-46386 Msa1399190:CDS 50.0%
CCTCTCGTTGTTGAAGGAGT+GGG - tig0022333:46368-46387 Msa1399190:CDS 50.0%
GGAAGATGAAGAGGAGGAAG+AGG - tig0022333:46464-46483 Msa1399190:CDS 50.0%
GAAGAGGAGGAAGAGGATGA+TGG - tig0022333:46471-46490 Msa1399190:CDS 50.0%
! GGTTGGGAATTCTAGCTGCT+GGG - tig0022333:48177-48196 Msa1399190:intron 50.0%
! GTTGGGAATTCTAGCTGCTG+GGG - tig0022333:48178-48197 Msa1399190:intron 50.0%
CCCCCCATAAAAAGACACGA+AGG + tig0022333:48226-48245 None:intergenic 50.0%
GGCAGTATGTCCTTCGCTAT+AGG + tig0022333:48731-48750 None:intergenic 50.0%
GTGCATGTCGAATCCCCAAA+AGG - tig0022333:49383-49402 Msa1399190:intron 50.0%
! GCCTTTTGCTCGGATATGGT+GGG - tig0022333:50177-50196 Msa1399190:intron 50.0%
TCCCACCATATCCGAGCAAA+AGG + tig0022333:50181-50200 None:intergenic 50.0%
TAGACCAGAACCCCACAATC+AGG - tig0022333:50225-50244 Msa1399190:intron 50.0%
TATCCTAGAGCACGACCAAC+TGG + tig0022333:50832-50851 None:intergenic 50.0%
!! TTGTCTTGGCCTTGCATCTC+AGG - tig0022333:50852-50871 Msa1399190:CDS 50.0%
!! TGTCTTGGCCTTGCATCTCA+GGG - tig0022333:50853-50872 Msa1399190:CDS 50.0%
! TCTCAGGGTGCTTCTGTTGA+TGG - tig0022333:50868-50887 Msa1399190:CDS 50.0%
! CTCAGGGTGCTTCTGTTGAT+GGG - tig0022333:50869-50888 Msa1399190:CDS 50.0%
! CGCTACCTGATCATTTTCCC+AGG - tig0022333:50902-50921 Msa1399190:CDS 50.0%
CTGCACCTTGAGTTTGTGGT+TGG - tig0022333:50971-50990 Msa1399190:CDS 50.0%
GAGAGAGAGTAGGGGGGTTT+GGG + tig0022333:41811-41830 None:intergenic 55.0%
AGAGAGAGAGTAGGGGGGTT+TGG + tig0022333:41812-41831 None:intergenic 55.0%
GTGAGAGAGAGAGAGTAGGG+GGG + tig0022333:41817-41836 None:intergenic 55.0%
GGTAACTGCGTTACCGGAGA+TGG + tig0022333:41931-41950 None:intergenic 55.0%
GGTAACAGAAACGGCATCGC+CGG + tig0022333:41967-41986 None:intergenic 55.0%
ACCAGTAGCTGAATCGGCAG+CGG + tig0022333:42078-42097 None:intergenic 55.0%
! CTCTTTGGCTCCTTTCCTCC+AGG + tig0022333:42239-42258 None:intergenic 55.0%
AGGGGATCCGATTCCGATAG+AGG - tig0022333:42319-42338 Msa1399190:intron 55.0%
GGATCCGATTCCGATAGAGG+AGG - tig0022333:42322-42341 Msa1399190:intron 55.0%
CGCAGCTTAGCCTCCTCTAT+CGG + tig0022333:42335-42354 None:intergenic 55.0%
TAGAGGAGGCTAAGCTGCGT+TGG - tig0022333:42336-42355 Msa1399190:intron 55.0%
! CTAAGCTGCGTTGGCCGAAA+CGG - tig0022333:42345-42364 Msa1399190:intron 55.0%
GCCGAAACGGTATCAGGAGA+AGG - tig0022333:42358-42377 Msa1399190:intron 55.0%
!! ACAGAGGCACAGGTTGATGG+GGG - tig0022333:43882-43901 Msa1399190:intron 55.0%
CCCACTCCTTCAACAACGAG+AGG + tig0022333:46371-46390 None:intergenic 55.0%
GACACTTGGGAGCCCATTAC+TGG - tig0022333:46739-46758 Msa1399190:intron 55.0%
!! GGGAGCCCATTACTGGTTTG+AGG - tig0022333:46746-46765 Msa1399190:intron 55.0%
CCTCCTTGTCAGGGAGTAAG+CGG - tig0022333:47957-47976 Msa1399190:intron 55.0%
AAGCCGCTTACTCCCTGACA+AGG + tig0022333:47963-47982 None:intergenic 55.0%
! CGGTTGGGAATTCTAGCTGC+TGG - tig0022333:48176-48195 Msa1399190:intron 55.0%
! ATTCTAGCTGCTGGGGCCTA+CGG - tig0022333:48185-48204 Msa1399190:intron 55.0%
GCGAAATTGAGGAAGCCCGT+AGG + tig0022333:48204-48223 None:intergenic 55.0%
! GGCCTTTTGCTCGGATATGG+TGG - tig0022333:50176-50195 Msa1399190:intron 55.0%
GTTCCAGTTGGTCGTGCTCT+AGG - tig0022333:50826-50845 Msa1399190:CDS 55.0%
!! CAGAAGCACCCTGAGATGCA+AGG + tig0022333:50864-50883 None:intergenic 55.0%
GCTGCCGGAAGTTGAATCGG+CGG + tig0022333:41988-42007 None:intergenic 60.0%
! GCGTTGGCCGAAACGGTATC+AGG - tig0022333:42352-42371 Msa1399190:intron 60.0%
!! ATGTGGCGGACCTCCTTGTC+AGG - tig0022333:47947-47966 Msa1399190:intron 60.0%
!! TGTGGCGGACCTCCTTGTCA+GGG - tig0022333:47948-47967 Msa1399190:intron 60.0%
CCGCTTACTCCCTGACAAGG+AGG + tig0022333:47960-47979 None:intergenic 60.0%
! TTCTAGCTGCTGGGGCCTAC+GGG - tig0022333:48186-48205 Msa1399190:intron 60.0%
!! GCCGCTGCCGATTCAGCTAC+TGG - tig0022333:42074-42093 Msa1399190:CDS 65.0%
ATGGGGGGCCGCACCTTCAG+AGG - tig0022333:48238-48257 Msa1399190:intron 70.0%
Chromosome Type Strat End Strand Name
tig0022333 gene 41747 51204 41747 ID=Msa1399190;Name=Msa1399190
tig0022333 mRNA 41747 51204 41747 ID=Msa1399190-mRNA-1;Parent=Msa1399190;Name=Msa1399190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147|0.9|0.95|0.95|0.95|0.95|21|223|915
tig0022333 exon 41747 42153 41747 ID=Msa1399190-mRNA-1:exon:17041;Parent=Msa1399190-mRNA-1
tig0022333 exon 42476 42579 42476 ID=Msa1399190-mRNA-1:exon:17040;Parent=Msa1399190-mRNA-1
tig0022333 exon 42705 42774 42705 ID=Msa1399190-mRNA-1:exon:17039;Parent=Msa1399190-mRNA-1
tig0022333 exon 42891 42934 42891 ID=Msa1399190-mRNA-1:exon:17038;Parent=Msa1399190-mRNA-1
tig0022333 exon 43227 43328 43227 ID=Msa1399190-mRNA-1:exon:17037;Parent=Msa1399190-mRNA-1
tig0022333 exon 43543 43658 43543 ID=Msa1399190-mRNA-1:exon:17036;Parent=Msa1399190-mRNA-1
tig0022333 exon 43961 44048 43961 ID=Msa1399190-mRNA-1:exon:17035;Parent=Msa1399190-mRNA-1
tig0022333 exon 44150 44236 44150 ID=Msa1399190-mRNA-1:exon:17034;Parent=Msa1399190-mRNA-1
tig0022333 exon 44336 44404 44336 ID=Msa1399190-mRNA-1:exon:17033;Parent=Msa1399190-mRNA-1
tig0022333 exon 44692 45021 44692 ID=Msa1399190-mRNA-1:exon:17032;Parent=Msa1399190-mRNA-1
tig0022333 exon 45163 45229 45163 ID=Msa1399190-mRNA-1:exon:17031;Parent=Msa1399190-mRNA-1
tig0022333 exon 45541 45551 45541 ID=Msa1399190-mRNA-1:exon:17030;Parent=Msa1399190-mRNA-1
tig0022333 exon 46358 46609 46358 ID=Msa1399190-mRNA-1:exon:17029;Parent=Msa1399190-mRNA-1
tig0022333 exon 47332 47397 47332 ID=Msa1399190-mRNA-1:exon:17028;Parent=Msa1399190-mRNA-1
tig0022333 exon 47498 47712 47498 ID=Msa1399190-mRNA-1:exon:17027;Parent=Msa1399190-mRNA-1
tig0022333 exon 47807 47906 47807 ID=Msa1399190-mRNA-1:exon:17026;Parent=Msa1399190-mRNA-1
tig0022333 exon 48414 48533 48414 ID=Msa1399190-mRNA-1:exon:17025;Parent=Msa1399190-mRNA-1
tig0022333 exon 48642 48749 48642 ID=Msa1399190-mRNA-1:exon:17024;Parent=Msa1399190-mRNA-1
tig0022333 exon 49010 49106 49010 ID=Msa1399190-mRNA-1:exon:17023;Parent=Msa1399190-mRNA-1
tig0022333 exon 49227 49258 49227 ID=Msa1399190-mRNA-1:exon:17022;Parent=Msa1399190-mRNA-1
tig0022333 exon 50572 51204 50572 ID=Msa1399190-mRNA-1:exon:17021;Parent=Msa1399190-mRNA-1
tig0022333 five_prime_UTR 51058 51204 51058 ID=Msa1399190-mRNA-1:five_prime_utr;Parent=Msa1399190-mRNA-1
tig0022333 CDS 50572 51057 50572 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 49227 49258 49227 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 49010 49106 49010 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 48642 48749 48642 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 48414 48533 48414 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 47807 47906 47807 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 47498 47712 47498 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 47332 47397 47332 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 46358 46609 46358 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 45541 45551 45541 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 45163 45229 45163 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 44692 45021 44692 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 44336 44404 44336 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 44150 44236 44150 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 43961 44048 43961 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 43543 43658 43543 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 43227 43328 43227 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 42891 42934 42891 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 42705 42774 42705 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 42476 42579 42476 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 CDS 41970 42153 41970 ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333 three_prime_UTR 41747 41969 41747 ID=Msa1399190-mRNA-1:three_prime_utr;Parent=Msa1399190-mRNA-1
Gene Sequence

>Msa1399190

ATGGCTGGGAAGCGTAAATCTAGGTCAAAAACTACCATCTCCGGTAACGCAGTTACCGCTGATTCTGTTTCCGGCGATGCCGTTTCTGTTACCGCCGATTCAACTTCCGGCAGCACTGTTCGTAAATCTAGGAGATTGACAAAGTCATCTTCCTCTTCAGTCGACACTGTTAATGTTGCTGCCGCTGCCGATTCAGCTACTGGTGAGACTCGTAGTAGATCTAGGAAAATGGCGAAATCATCTTCATCCACCTCTTCTGCTTCCAGTGATGCTGTGAATGTCTCCGCTGATTCAACATCTGGTAAGACTCGCAAGAAGCCTAAGAAGAAAGCGGATCTGAATCCTGGAGGAAAGGAGCCAAAGAGTGAAACTGTTTCGATGAATGTTGACGGCGGTGATAATGAAGTTTCCAACTCCAAATTTATAGGGGATCCGATTCCGATAGAGGAGGCTAAGCTGCGTTGGCCGAAACGGTATCAGGAGAAGGAAAAGAAGAAATCTCGTTCAAGATCAATCAGTGATGAAGAGGAAGTTCTTCTAGCTAGATGTCACTATACAGAGGCACAGGTTGATGGGGGCGTGATGTACAAACTTTATGATGATGCGTATGTGCAGGGTGAGACAGATGATTACCATTTCATTTGTAAAATCGTTGAGATGTTTGAAGCAGTTGATGGAGGACTGTATTTCACAGCACAATGGTACTATAGAGCCAATGACACAGTCATCAAACAACTAGGAAATCTCATTGAGCCAAAACGTGTATTTTTCTCAGAAATCCAGGATGACAATCCATTGGATTGTCTTGTTAAGAAGTTAACCATTCTCAGATTAGAGCTCAAGAAGGATTTTGATGCAACGAAGGATGTTATTCCACCTTGCGATTATTACTGCGATACACTTTATCTTTTACCCTACTCCACATTTGTTAAACTACCATCGGAAACTAAAGAAAATGGTAGCGAAATATCCTCAACAATTTCAAATGATACTGAAGTGAATGCAAAATCTGAGGTTGACTCTAAAAGTGCAAACACTGATATTAGTGTTGAAAAGAAAAAACCACAGATGAAGTTGCTAGATTTGTACTCTGGTTGTGGAGGAATGTCAACAGGATTATGTCAAGGGGGGATTTTGTCTGGTTCAGATATTATCACCAAATGGGCTGTGGACCTTAACAAAGATGCTTGTCAGAGCCTTAAACTCAACCATCCAGAAACTGAGGTTAGAAATGTCAGTGCAGAACTTTTCCTCTCGTTGTTGAAGGAGTGGGAGAAGCTTTGCAGTTACTTCTCCTTAATTGAAAATTTTGTGCCACATGAGGAATACACAAATCTTTTTAATGAGGAAGATGAAGAGGAGGAAGAGGATGATGGCGCTGCTGAAGAGAATATTGACGAAGAAATATTTGAAGTTTCTGAAGTGCATGATGTACGTTATGATGATAAGGAAACTGGACCTGGATTATACTTTAAGTATGATGTAATTAACTGCAAGGAAAGGATTAAGGACTTCGTCACTCGCGGCTTCAAGTCAAGCATCTTACCATTGCCGGGACATGTGGATGTAGTATGTGGCGGACCTCCTTGTCAGGGAGTAAGCGGCTTCAACCGTTTCAGAAACTATGCTAATCCTTTGGACGATGAAAAGAACAAGCAATTAATGGTCTTTATGGATATTGTTCAATACCTTCGGCCTAGATTCACATTAATGGAAAATGTAGTTGATCTTCTTAGATTTTCAGAAGGCTTTCTAGGAAGGTATGCATTGGGCCGTCTTGTTAAAATGAATTATCAAAGTCGGTTGGGAATTCTAGCTGCTGGGGCCTACGGGCTTCCTCAATTTCGCCTTCGTGTCTTTTTATGGGGGGCCGCACCTTCAGAGAATCTGCCTCAATTTCCACTACCAACTCATGATGTTATAGAAAGAGGTTCTGTACCTGTGGAGTTTGAGGGTTGTTTAGTGGCCTATAGCGAAGGACATACTGCCCAGCTGCAAAAAAAACTCGTGTTAAACGACGCTATTTCAGATCTGCCTTCAATTGAGAATAATGAAAGTCGTGATGACATGGAATATGGCGGACCTCCTTTGACAGAGTTTCAAAAGTTTATTAGATTAAGCGAAAGTGAGATGTTGGGTCGTTCAATTAAGAAGAAATCTTCTAAGTCCCTGCTTCATGATCATCGGTCTTATGAAATGAATTCTGATGATTATCAACGTGCATGTCGAATCCCCAAAAGGAAGGGAGCATGCTTCAGAGATTTACCGTGTGTTCGTATGCGGAACAAAAAAGTTGAATTGAATCCTGATGTGGAGCGTGAATTATTGCCTTCAGGAAAACCACTGGTTCCCAACTATGCTATTTCTTTTGTGCGTGGAACTTCACCACTGCCTTTTGCTCGGATATGGTGGGACGAGACTGTTCCTACTGTTGTCACTAGACCAGAACCCCACAATCAGAAAATTCTGCATCCAGAGCAAGATAGAGTGCTATCCGTTCGCGAAAATGCTAGATTACAAGGTTTTCCAGATTTTTATAAGCTATGCGGATCTGTCAAAGAAAGGTACATTCAAATTGGGAATGCAGTTGCTGTTCCAGTTGGTCGTGCTCTAGGATATTGTCTTGGCCTTGCATCTCAGGGTGCTTCTGTTGATGGGCCTTTGTACACGCTACCTGATCATTTTCCCAGGAAAAAAGAACAAGCTTCTACTGCGGCATCTGAAGAAGTCGTGCATACTGCACCTTGA
Protein sequence

>Msa1399190

MAGKRKSRSKTTISGNAVTADSVSGDAVSVTADSTSGSTVRKSRRLTKSSSSSVDTVNVAAAADSATGETRSRSRKMAKSSSSTSSASSDAVNVSADSTSGKTRKKPKKKADLNPGGKEPKSETVSMNVDGGDNEVSNSKFIGDPIPIEEAKLRWPKRYQEKEKKKSRSRSISDEEEVLLARCHYTEAQVDGGVMYKLYDDAYVQGETDDYHFICKIVEMFEAVDGGLYFTAQWYYRANDTVIKQLGNLIEPKRVFFSEIQDDNPLDCLVKKLTILRLELKKDFDATKDVIPPCDYYCDTLYLLPYSTFVKLPSETKENGSEISSTISNDTEVNAKSEVDSKSANTDISVEKKKPQMKLLDLYSGCGGMSTGLCQGGILSGSDIITKWAVDLNKDACQSLKLNHPETEVRNVSAELFLSLLKEWEKLCSYFSLIENFVPHEEYTNLFNEEDEEEEEDDGAAEENIDEEIFEVSEVHDVRYDDKETGPGLYFKYDVINCKERIKDFVTRGFKSSILPLPGHVDVVCGGPPCQGVSGFNRFRNYANPLDDEKNKQLMVFMDIVQYLRPRFTLMENVVDLLRFSEGFLGRYALGRLVKMNYQSRLGILAAGAYGLPQFRLRVFLWGAAPSENLPQFPLPTHDVIERGSVPVEFEGCLVAYSEGHTAQLQKKLVLNDAISDLPSIENNESRDDMEYGGPPLTEFQKFIRLSESEMLGRSIKKKSSKSLLHDHRSYEMNSDDYQRACRIPKRKGACFRDLPCVRMRNKKVELNPDVERELLPSGKPLVPNYAISFVRGTSPLPFARIWWDETVPTVVTRPEPHNQKILHPEQDRVLSVRENARLQGFPDFYKLCGSVKERYIQIGNAVAVPVGRALGYCLGLASQGASVDGPLYTLPDHFPRKKEQASTAASEEVVHTAP*