AlfalfaGEDB | Msa1399190

M. sativa cultivar zhongmu-4 / Msa1399190

KEGG: K00558
GO: -
PFAM: PF01426.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399190	XP_013453176.1	87.991	941	81	6	1	915	1	935	0.0	1658

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399190	sp\|Q94F88\|CMT3_ARATH	53.373	830	346	17	95	895	10	827	0.0	822

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399190	A0A072UBK7	87.991	941	81	6	1	915	1	935	0.0	1658

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1399190	0.844558	7.018700e-59	-8.615850e-47
Msa0006840	Msa1399190	0.839036	2.014994e-57	-8.615850e-47
Msa0015570	Msa1399190	0.846887	1.637130e-59	-8.615850e-47
Msa0016040	Msa1399190	0.823590	1.276487e-53	-8.615850e-47
Msa0016530	Msa1399190	0.817180	3.768799e-52	-8.615850e-47
Msa0018920	Msa1399190	0.850143	2.054012e-60	-8.615850e-47
Msa0019930	Msa1399190	0.831596	1.526046e-55	-8.615850e-47
Msa0020540	Msa1399190	0.886758	2.587594e-72	-8.615850e-47
Msa0027800	Msa1399190	0.843561	1.299079e-58	-8.615850e-47
Msa0030070	Msa1399190	0.880098	7.259857e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399190	MtrunA17_Chr6g0486931	87.991	941	81	6	1	915	1	935	0.0	1658
Msa1399190	MtrunA17_Chr6g0484831	54.756	778	312	11	141	896	60	819	0.0	835
Msa1399190	MtrunA17_Chr5g0406641	54.417	781	310	12	141	896	61	820	0.0	825
Msa1399190	MtrunA17_Chr7g0215341	51.371	839	361	13	77	896	1	811	0.0	820
Msa1399190	MtrunA17_Chr4g0007641	51.127	843	347	14	89	896	15	827	0.0	814
Msa1399190	MtrunA17_Chr6g0464681	49.059	797	319	11	141	896	60	810	0.0	734
Msa1399190	MtrunA17_Chr8g0369361	48.524	779	364	13	141	895	9	774	0.0	726
Msa1399190	MtrunA17_Chr5g0427891	85.596	361	52	0	555	915	1	361	0.0	643
Msa1399190	MtrunA17_Chr5g0427871	80.000	130	26	0	116	245	13	142	2.78e-69	226
Msa1399190	MtrunA17_Chr2g0302601	37.260	365	196	9	513	872	1213	1549	5.46e-64	236

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399190	AT1G69770.1	53.373	830	346	17	95	895	10	827	0.0	822
Msa1399190	AT4G19020.1	49.045	785	358	13	134	895	516	1281	0.0	758
Msa1399190	AT4G19020.2	49.045	785	358	13	134	895	468	1233	0.0	757
Msa1399190	AT1G80740.1	48.408	785	355	11	141	896	19	782	0.0	700
Msa1399190	AT5G49160.1	38.606	373	184	12	511	872	1179	1517	1.03e-61	229
Msa1399190	AT5G49160.2	38.606	373	184	12	511	872	1091	1429	1.41e-61	228
Msa1399190	AT4G14140.3	36.240	367	201	7	511	872	1164	1502	7.40e-61	226
Msa1399190	AT4G14140.1	36.240	367	201	7	511	872	1164	1502	7.40e-61	226
Msa1399190	AT4G14140.2	36.240	367	201	7	511	872	1190	1528	7.60e-61	226
Msa1399190	AT4G08990.1	35.150	367	205	7	511	872	1157	1495	3.81e-58	218

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Find 203 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAAGCTTCTACTG+CGG	0.653435	tig0022333:-42002	Msa1399190:CDS
AAAAGTGGGAAAAGTAATTA+AGG	0.309627	tig0022333:+51154	None:intergenic
AAAGCGGATCTGAATCCTGG+AGG	0.746525	tig0022333:-50708	Msa1399190:CDS
AAATCTAGCAACTTCATCTG+TGG	0.618134	tig0022333:+47571	None:intergenic
AAGAAAGCGGATCTGAATCC+TGG	0.445996	tig0022333:-50711	Msa1399190:CDS
AAGACACGAAGGCGAAATTG+AGG	0.587215	tig0022333:+44717	None:intergenic
AAGACCGATGATCATGAAGC+AGG	0.541642	tig0022333:+43596	None:intergenic
AAGCCGCTTACTCCCTGACA+AGG	0.684437	tig0022333:+44969	None:intergenic
AAGTTGCTAGATTTGTACTC+TGG	0.505648	tig0022333:-47562	Msa1399190:CDS
AATAATTCACGCTCCACATC+AGG	0.457569	tig0022333:+43246	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGGAAAAGTAATTAAGGAA+AGG	+	tig0022333:41773-41792	None:intergenic	30.0%
GTTTCCAACTCCAAATTTAT+AGG	-	tig0022333:42299-42318	Msa1399190:intron	30.0%
TTCCAACTCCAAATTTATAG+GGG	-	tig0022333:42301-42320	Msa1399190:intron	30.0%
TCATTCGGTTTCATATCAAA+TGG	+	tig0022333:42624-42643	None:intergenic	30.0%
TTTGATATGAAACCGAATGA+AGG	-	tig0022333:42624-42643	Msa1399190:intron	30.0%
CACACATTTGATTAGATTTG+TGG	-	tig0022333:43185-43204	Msa1399190:intron	30.0%
CTAAAACTTCACTTGAAAGT+TGG	+	tig0022333:43313-43332	None:intergenic	30.0%
TTAACCCACTTCAATAATCA+AGG	+	tig0022333:43501-43520	None:intergenic	30.0%
TGACTAAGCTATTGAATTCT+GGG	+	tig0022333:43539-43558	None:intergenic	30.0%
AAGTGTGTAAGACATAATTG+TGG	+	tig0022333:44322-44341	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022333	gene	41747	51204	41747	ID=Msa1399190;Name=Msa1399190
tig0022333	mRNA	41747	51204	41747	ID=Msa1399190-mRNA-1;Parent=Msa1399190;Name=Msa1399190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=147\|0.9\|0.95\|0.95\|0.95\|0.95\|21\|223\|915
tig0022333	exon	41747	42153	41747	ID=Msa1399190-mRNA-1:exon:17041;Parent=Msa1399190-mRNA-1
tig0022333	exon	42476	42579	42476	ID=Msa1399190-mRNA-1:exon:17040;Parent=Msa1399190-mRNA-1
tig0022333	exon	42705	42774	42705	ID=Msa1399190-mRNA-1:exon:17039;Parent=Msa1399190-mRNA-1
tig0022333	exon	42891	42934	42891	ID=Msa1399190-mRNA-1:exon:17038;Parent=Msa1399190-mRNA-1
tig0022333	exon	43227	43328	43227	ID=Msa1399190-mRNA-1:exon:17037;Parent=Msa1399190-mRNA-1
tig0022333	exon	43543	43658	43543	ID=Msa1399190-mRNA-1:exon:17036;Parent=Msa1399190-mRNA-1
tig0022333	exon	43961	44048	43961	ID=Msa1399190-mRNA-1:exon:17035;Parent=Msa1399190-mRNA-1
tig0022333	exon	44150	44236	44150	ID=Msa1399190-mRNA-1:exon:17034;Parent=Msa1399190-mRNA-1
tig0022333	exon	44336	44404	44336	ID=Msa1399190-mRNA-1:exon:17033;Parent=Msa1399190-mRNA-1
tig0022333	exon	44692	45021	44692	ID=Msa1399190-mRNA-1:exon:17032;Parent=Msa1399190-mRNA-1
tig0022333	exon	45163	45229	45163	ID=Msa1399190-mRNA-1:exon:17031;Parent=Msa1399190-mRNA-1
tig0022333	exon	45541	45551	45541	ID=Msa1399190-mRNA-1:exon:17030;Parent=Msa1399190-mRNA-1
tig0022333	exon	46358	46609	46358	ID=Msa1399190-mRNA-1:exon:17029;Parent=Msa1399190-mRNA-1
tig0022333	exon	47332	47397	47332	ID=Msa1399190-mRNA-1:exon:17028;Parent=Msa1399190-mRNA-1
tig0022333	exon	47498	47712	47498	ID=Msa1399190-mRNA-1:exon:17027;Parent=Msa1399190-mRNA-1
tig0022333	exon	47807	47906	47807	ID=Msa1399190-mRNA-1:exon:17026;Parent=Msa1399190-mRNA-1
tig0022333	exon	48414	48533	48414	ID=Msa1399190-mRNA-1:exon:17025;Parent=Msa1399190-mRNA-1
tig0022333	exon	48642	48749	48642	ID=Msa1399190-mRNA-1:exon:17024;Parent=Msa1399190-mRNA-1
tig0022333	exon	49010	49106	49010	ID=Msa1399190-mRNA-1:exon:17023;Parent=Msa1399190-mRNA-1
tig0022333	exon	49227	49258	49227	ID=Msa1399190-mRNA-1:exon:17022;Parent=Msa1399190-mRNA-1
tig0022333	exon	50572	51204	50572	ID=Msa1399190-mRNA-1:exon:17021;Parent=Msa1399190-mRNA-1
tig0022333	five_prime_UTR	51058	51204	51058	ID=Msa1399190-mRNA-1:five_prime_utr;Parent=Msa1399190-mRNA-1
tig0022333	CDS	50572	51057	50572	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	49227	49258	49227	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	49010	49106	49010	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	48642	48749	48642	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	48414	48533	48414	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	47807	47906	47807	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	47498	47712	47498	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	47332	47397	47332	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	46358	46609	46358	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	45541	45551	45541	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	45163	45229	45163	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	44692	45021	44692	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	44336	44404	44336	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	44150	44236	44150	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	43961	44048	43961	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	43543	43658	43543	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	43227	43328	43227	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	42891	42934	42891	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	42705	42774	42705	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	42476	42579	42476	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	CDS	41970	42153	41970	ID=Msa1399190-mRNA-1:cds;Parent=Msa1399190-mRNA-1
tig0022333	three_prime_UTR	41747	41969	41747	ID=Msa1399190-mRNA-1:three_prime_utr;Parent=Msa1399190-mRNA-1

Gene Sequence

>Msa1399190

ATGGCTGGGAAGCGTAAATCTAGGTCAAAAACTACCATCTCCGGTAACGCAGTTACCGCTGATTCTGTTTCCGGCGATGCCGTTTCTGTTACCGCCGATTCAACTTCCGGCAGCACTGTTCGTAAATCTAGGAGATTGACAAAGTCATCTTCCTCTTCAGTCGACACTGTTAATGTTGCTGCCGCTGCCGATTCAGCTACTGGTGAGACTCGTAGTAGATCTAGGAAAATGGCGAAATCATCTTCATCCACCTCTTCTGCTTCCAGTGATGCTGTGAATGTCTCCGCTGATTCAACATCTGGTAAGACTCGCAAGAAGCCTAAGAAGAAAGCGGATCTGAATCCTGGAGGAAAGGAGCCAAAGAGTGAAACTGTTTCGATGAATGTTGACGGCGGTGATAATGAAGTTTCCAACTCCAAATTTATAGGGGATCCGATTCCGATAGAGGAGGCTAAGCTGCGTTGGCCGAAACGGTATCAGGAGAAGGAAAAGAAGAAATCTCGTTCAAGATCAATCAGTGATGAAGAGGAAGTTCTTCTAGCTAGATGTCACTATACAGAGGCACAGGTTGATGGGGGCGTGATGTACAAACTTTATGATGATGCGTATGTGCAGGGTGAGACAGATGATTACCATTTCATTTGTAAAATCGTTGAGATGTTTGAAGCAGTTGATGGAGGACTGTATTTCACAGCACAATGGTACTATAGAGCCAATGACACAGTCATCAAACAACTAGGAAATCTCATTGAGCCAAAACGTGTATTTTTCTCAGAAATCCAGGATGACAATCCATTGGATTGTCTTGTTAAGAAGTTAACCATTCTCAGATTAGAGCTCAAGAAGGATTTTGATGCAACGAAGGATGTTATTCCACCTTGCGATTATTACTGCGATACACTTTATCTTTTACCCTACTCCACATTTGTTAAACTACCATCGGAAACTAAAGAAAATGGTAGCGAAATATCCTCAACAATTTCAAATGATACTGAAGTGAATGCAAAATCTGAGGTTGACTCTAAAAGTGCAAACACTGATATTAGTGTTGAAAAGAAAAAACCACAGATGAAGTTGCTAGATTTGTACTCTGGTTGTGGAGGAATGTCAACAGGATTATGTCAAGGGGGGATTTTGTCTGGTTCAGATATTATCACCAAATGGGCTGTGGACCTTAACAAAGATGCTTGTCAGAGCCTTAAACTCAACCATCCAGAAACTGAGGTTAGAAATGTCAGTGCAGAACTTTTCCTCTCGTTGTTGAAGGAGTGGGAGAAGCTTTGCAGTTACTTCTCCTTAATTGAAAATTTTGTGCCACATGAGGAATACACAAATCTTTTTAATGAGGAAGATGAAGAGGAGGAAGAGGATGATGGCGCTGCTGAAGAGAATATTGACGAAGAAATATTTGAAGTTTCTGAAGTGCATGATGTACGTTATGATGATAAGGAAACTGGACCTGGATTATACTTTAAGTATGATGTAATTAACTGCAAGGAAAGGATTAAGGACTTCGTCACTCGCGGCTTCAAGTCAAGCATCTTACCATTGCCGGGACATGTGGATGTAGTATGTGGCGGACCTCCTTGTCAGGGAGTAAGCGGCTTCAACCGTTTCAGAAACTATGCTAATCCTTTGGACGATGAAAAGAACAAGCAATTAATGGTCTTTATGGATATTGTTCAATACCTTCGGCCTAGATTCACATTAATGGAAAATGTAGTTGATCTTCTTAGATTTTCAGAAGGCTTTCTAGGAAGGTATGCATTGGGCCGTCTTGTTAAAATGAATTATCAAAGTCGGTTGGGAATTCTAGCTGCTGGGGCCTACGGGCTTCCTCAATTTCGCCTTCGTGTCTTTTTATGGGGGGCCGCACCTTCAGAGAATCTGCCTCAATTTCCACTACCAACTCATGATGTTATAGAAAGAGGTTCTGTACCTGTGGAGTTTGAGGGTTGTTTAGTGGCCTATAGCGAAGGACATACTGCCCAGCTGCAAAAAAAACTCGTGTTAAACGACGCTATTTCAGATCTGCCTTCAATTGAGAATAATGAAAGTCGTGATGACATGGAATATGGCGGACCTCCTTTGACAGAGTTTCAAAAGTTTATTAGATTAAGCGAAAGTGAGATGTTGGGTCGTTCAATTAAGAAGAAATCTTCTAAGTCCCTGCTTCATGATCATCGGTCTTATGAAATGAATTCTGATGATTATCAACGTGCATGTCGAATCCCCAAAAGGAAGGGAGCATGCTTCAGAGATTTACCGTGTGTTCGTATGCGGAACAAAAAAGTTGAATTGAATCCTGATGTGGAGCGTGAATTATTGCCTTCAGGAAAACCACTGGTTCCCAACTATGCTATTTCTTTTGTGCGTGGAACTTCACCACTGCCTTTTGCTCGGATATGGTGGGACGAGACTGTTCCTACTGTTGTCACTAGACCAGAACCCCACAATCAGAAAATTCTGCATCCAGAGCAAGATAGAGTGCTATCCGTTCGCGAAAATGCTAGATTACAAGGTTTTCCAGATTTTTATAAGCTATGCGGATCTGTCAAAGAAAGGTACATTCAAATTGGGAATGCAGTTGCTGTTCCAGTTGGTCGTGCTCTAGGATATTGTCTTGGCCTTGCATCTCAGGGTGCTTCTGTTGATGGGCCTTTGTACACGCTACCTGATCATTTTCCCAGGAAAAAAGAACAAGCTTCTACTGCGGCATCTGAAGAAGTCGTGCATACTGCACCTTGA

Protein sequence

>Msa1399190

MAGKRKSRSKTTISGNAVTADSVSGDAVSVTADSTSGSTVRKSRRLTKSSSSSVDTVNVAAAADSATGETRSRSRKMAKSSSSTSSASSDAVNVSADSTSGKTRKKPKKKADLNPGGKEPKSETVSMNVDGGDNEVSNSKFIGDPIPIEEAKLRWPKRYQEKEKKKSRSRSISDEEEVLLARCHYTEAQVDGGVMYKLYDDAYVQGETDDYHFICKIVEMFEAVDGGLYFTAQWYYRANDTVIKQLGNLIEPKRVFFSEIQDDNPLDCLVKKLTILRLELKKDFDATKDVIPPCDYYCDTLYLLPYSTFVKLPSETKENGSEISSTISNDTEVNAKSEVDSKSANTDISVEKKKPQMKLLDLYSGCGGMSTGLCQGGILSGSDIITKWAVDLNKDACQSLKLNHPETEVRNVSAELFLSLLKEWEKLCSYFSLIENFVPHEEYTNLFNEEDEEEEEDDGAAEENIDEEIFEVSEVHDVRYDDKETGPGLYFKYDVINCKERIKDFVTRGFKSSILPLPGHVDVVCGGPPCQGVSGFNRFRNYANPLDDEKNKQLMVFMDIVQYLRPRFTLMENVVDLLRFSEGFLGRYALGRLVKMNYQSRLGILAAGAYGLPQFRLRVFLWGAAPSENLPQFPLPTHDVIERGSVPVEFEGCLVAYSEGHTAQLQKKLVLNDAISDLPSIENNESRDDMEYGGPPLTEFQKFIRLSESEMLGRSIKKKSSKSLLHDHRSYEMNSDDYQRACRIPKRKGACFRDLPCVRMRNKKVELNPDVERELLPSGKPLVPNYAISFVRGTSPLPFARIWWDETVPTVVTRPEPHNQKILHPEQDRVLSVRENARLQGFPDFYKLCGSVKERYIQIGNAVAVPVGRALGYCLGLASQGASVDGPLYTLPDHFPRKKEQASTAASEEVVHTAP*