Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509060 | XP_003600959.1 | 96.047 | 506 | 17 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1002 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509060 | sp|Q54CV5|BUB1_DICDI | 35.000 | 140 | 91 | 0 | 15 | 154 | 51 | 190 | 2.21e-23 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509060 | G7JBX0 | 96.047 | 506 | 17 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0463610 | Msa0509060 | 0.812146 | 4.910158e-51 | -8.615850e-47 |
| Msa0509060 | Msa0563740 | 0.815903 | 7.282013e-52 | -8.615850e-47 |
| Msa0509060 | Msa0728780 | 0.812443 | 4.228061e-51 | -8.615850e-47 |
| Msa0509060 | Msa0769730 | 0.808997 | 2.352685e-50 | -8.615850e-47 |
| Msa0509060 | Msa0931590 | 0.803702 | 3.073086e-49 | -8.615850e-47 |
| Msa0509060 | Msa1078880 | 0.809362 | 1.964830e-50 | -8.615850e-47 |
| Msa0509060 | Msa1078970 | 0.806381 | 8.455372e-50 | -8.615850e-47 |
| Msa0509060 | Msa1169190 | 0.804194 | 2.428458e-49 | -8.615850e-47 |
| Msa0509060 | Msa1261050 | 0.806393 | 8.408202e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509060 | MtrunA17_Chr3g0113931 | 96.047 | 506 | 17 | 1 | 1 | 503 | 1 | 506 | 0.0 | 1002 |
| Msa0509060 | MtrunA17_Chr1g0162841 | 33.793 | 145 | 95 | 1 | 12 | 155 | 69 | 213 | 2.81e-24 | 104 |
| Msa0509060 | MtrunA17_Chr4g0040351 | 30.612 | 147 | 99 | 2 | 22 | 167 | 18 | 162 | 4.26e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0509060 | AT5G05510.1 | 52.286 | 503 | 192 | 10 | 7 | 503 | 11 | 471 | 3.42e-166 | 478 |
| Msa0509060 | AT2G33560.1 | 32.759 | 174 | 106 | 3 | 12 | 179 | 70 | 238 | 2.42e-24 | 105 |
| Msa0509060 | AT2G33560.2 | 33.333 | 141 | 94 | 0 | 12 | 152 | 70 | 210 | 3.64e-24 | 104 |
| Msa0509060 | AT2G20635.1 | 29.940 | 167 | 116 | 1 | 22 | 187 | 11 | 177 | 5.54e-19 | 90.5 |
Find 114 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGTTGGTTCTGCCATTT+TGG | 0.183726 | 3_4:+57360260 | Msa0509060:CDS |
| TTTGACTTTCCTCGCGATTT+TGG | 0.254949 | 3_4:-57360648 | None:intergenic |
| CACCTTTGGTTCATCCAAAA+TGG | 0.257555 | 3_4:-57360274 | None:intergenic |
| GGTTCTACTTCAAAAGTAAA+TGG | 0.271000 | 3_4:+57360132 | Msa0509060:CDS |
| CTCACTGAACATGCTGTTAA+TGG | 0.285840 | 3_4:-57359899 | None:intergenic |
| ACTATGGAAGTTAATCAAAT+TGG | 0.304117 | 3_4:+57358875 | Msa0509060:CDS |
| TACCTCCTTGTTTCTGTTTG+AGG | 0.315762 | 3_4:-57360491 | None:intergenic |
| TTCTTTCTAACAAAGTCTAT+TGG | 0.317378 | 3_4:-57360381 | None:intergenic |
| TATCCGCACGTTTCTTCCTT+TGG | 0.330156 | 3_4:+57360783 | Msa0509060:three_prime_UTR |
| GCGCATTGTTGCAAGAATTC+AGG | 0.337809 | 3_4:-57358573 | None:intergenic |
| TCGATCGAGCTCGAATGTTT+TGG | 0.341700 | 3_4:-57358595 | None:intergenic |
| GCCATTAGAGACTGTTCCTT+TGG | 0.343407 | 3_4:+57359921 | Msa0509060:CDS |
| ATTCCTGTGCTGAAGTGATA+TGG | 0.351387 | 3_4:-57360046 | None:intergenic |
| ATGTTCCTTCTGAGAAATCT+AGG | 0.354263 | 3_4:+57360178 | Msa0509060:CDS |
| ATTTACGTTATCTTCGTGTT+TGG | 0.366125 | 3_4:+57358631 | Msa0509060:CDS |
| CTTCCTTTGGAACTAGTTTG+AGG | 0.375126 | 3_4:+57360796 | Msa0509060:three_prime_UTR |
| TCCTTTCCACTGTTGTTCCC+TGG | 0.377586 | 3_4:-57360564 | None:intergenic |
| ATCATACAGTTGTAATCAAC+AGG | 0.378340 | 3_4:+57359779 | Msa0509060:CDS |
| GTCTCCTTCATATTTATTGT+AGG | 0.380066 | 3_4:-57359868 | None:intergenic |
| GGCAGAGAAAATGTATCATA+TGG | 0.390291 | 3_4:+57358964 | Msa0509060:CDS |
| GATGACATAAACAACATGTT+TGG | 0.397182 | 3_4:+57360354 | Msa0509060:CDS |
| CCACCTAAAAGCAGATGAAT+TGG | 0.404968 | 3_4:-57360825 | None:intergenic |
| GCTTCCTTCATGTTGATTGT+GGG | 0.415791 | 3_4:-57360327 | None:intergenic |
| CCATTAGAGACTGTTCCTTT+GGG | 0.416475 | 3_4:+57359922 | Msa0509060:CDS |
| AGGGAGAAGAGGGTCTTTGC+CGG | 0.417939 | 3_4:-57358362 | None:intergenic |
| TCCTTTCCGCTATTGTTCTC+CGG | 0.421548 | 3_4:-57360429 | None:intergenic |
| CATGCTGTTAATGGCATTCA+TGG | 0.427922 | 3_4:-57359890 | None:intergenic |
| GCTTCCTTTGTGTGAAGAGT+TGG | 0.428380 | 3_4:-57360690 | None:intergenic |
| CCGTTGATTCGATTTCGAAA+TGG | 0.429024 | 3_4:+57358288 | Msa0509060:exon |
| ACAGTTGTTCGTAGATTTGT+TGG | 0.429705 | 3_4:+57360246 | Msa0509060:CDS |
| AAAGAAAAGGTCACTGAAGC+AGG | 0.434502 | 3_4:+57360398 | Msa0509060:CDS |
| CAAGATGTTTAATATGCCTC+TGG | 0.434521 | 3_4:+57360728 | Msa0509060:CDS |
| TGCTTCAGACTTTCCATCCA+TGG | 0.435699 | 3_4:-57359815 | None:intergenic |
| AACAATAGCGGAAAGGAATT+CGG | 0.440662 | 3_4:+57360435 | Msa0509060:CDS |
| ATGACATAAACAACATGTTT+GGG | 0.440880 | 3_4:+57360355 | Msa0509060:CDS |
| GAAGCGCAAGAAGAAAATTC+AGG | 0.448200 | 3_4:+57359575 | Msa0509060:CDS |
| GAGTGCGTTGTTGAGAACTA+TGG | 0.449375 | 3_4:+57358859 | Msa0509060:CDS |
| CCCAAAGGAACAGTCTCTAA+TGG | 0.452871 | 3_4:-57359922 | None:intergenic |
| TGCTTCCTTCATGTTGATTG+TGG | 0.459540 | 3_4:-57360328 | None:intergenic |
| TAGACTTTGTTAGAAAGAAA+AGG | 0.462035 | 3_4:+57360385 | Msa0509060:CDS |
| TTAATCAAATTGGAACTAAA+CGG | 0.467873 | 3_4:+57358885 | Msa0509060:CDS |
| TTCTCAGAAGGAACATCCTT+AGG | 0.469842 | 3_4:-57360171 | None:intergenic |
| GATGAGAGCAAGAAATTTCG+TGG | 0.475267 | 3_4:+57359754 | Msa0509060:CDS |
| ATCTGAAGTGATTCTTGTTG+AGG | 0.482943 | 3_4:-57360081 | None:intergenic |
| ACCCTCTTCTCCCTTGGCTC+CGG | 0.490297 | 3_4:+57358371 | Msa0509060:CDS |
| TCTTCGTGTTTGGCTCCACT+TGG | 0.500289 | 3_4:+57358641 | Msa0509060:CDS |
| TTGAAGCAGGAGAAAGCACC+AGG | 0.500311 | 3_4:+57360546 | Msa0509060:CDS |
| CGGTTGCCGCGGCGGTGACA+CGG | 0.506314 | 3_4:-57358265 | None:intergenic |
| GCAAAGACCCTCTTCTCCCT+TGG | 0.507877 | 3_4:+57358365 | Msa0509060:CDS |
| CTACGCGACTCTTTAAAATG+AGG | 0.512002 | 3_4:-57358214 | None:intergenic |
| CTTCCTTCATGTTGATTGTG+GGG | 0.515427 | 3_4:-57360326 | None:intergenic |
| CATCTTGTTAATGTCATCCA+TGG | 0.515931 | 3_4:-57360712 | None:intergenic |
| AGCTGCTGATAGACGCGTAA+AGG | 0.519448 | 3_4:+57359723 | Msa0509060:CDS |
| AGAGAAGATTACCGGAGCCA+AGG | 0.520415 | 3_4:-57358382 | None:intergenic |
| GATTTCTGCAATTCATCCAC+AGG | 0.525527 | 3_4:-57359528 | None:intergenic |
| AGATCCTACAATAAATATGA+AGG | 0.533915 | 3_4:+57359864 | Msa0509060:CDS |
| CAGATATATATTGACGATGA+AGG | 0.536757 | 3_4:+57360099 | Msa0509060:CDS |
| TCACTTCAGCACAGGAATGA+AGG | 0.537771 | 3_4:+57360051 | Msa0509060:CDS |
| TACCGGAGCCAAGGGAGAAG+AGG | 0.539658 | 3_4:-57358373 | None:intergenic |
| CGAATCAACGGCGGTTGCCG+CGG | 0.541168 | 3_4:-57358276 | None:intergenic |
| ATAGTTCTCAACAACGCACT+CGG | 0.542554 | 3_4:-57358857 | None:intergenic |
| GAGAAGATTACCGGAGCCAA+GGG | 0.543631 | 3_4:-57358381 | None:intergenic |
| TTATGTGATTTCTTGCCCAA+AGG | 0.557166 | 3_4:-57359937 | None:intergenic |
| AAATGCATGCCATCACGGAC+TGG | 0.557170 | 3_4:+57359840 | Msa0509060:CDS |
| AAGAGGGTCTTTGCCGGTGT+AGG | 0.558993 | 3_4:-57358356 | None:intergenic |
| GACGATGAAGGACGTTCAGA+AGG | 0.564852 | 3_4:+57360111 | Msa0509060:CDS |
| GCAGAGAAAATGTATCATAT+GGG | 0.565740 | 3_4:+57358965 | Msa0509060:CDS |
| TTTGTTGACACTGCCATGGA+TGG | 0.569721 | 3_4:+57359802 | Msa0509060:CDS |
| ATGTCCCTAGATTTCTCAGA+AGG | 0.572062 | 3_4:-57360183 | None:intergenic |
| ATCAACGGCGGTTGCCGCGG+CGG | 0.575852 | 3_4:-57358273 | None:intergenic |
| TTCTGAGAAATCTAGGGACA+TGG | 0.580654 | 3_4:+57360185 | Msa0509060:CDS |
| TGTTCCTTCTGAGAAATCTA+GGG | 0.580783 | 3_4:+57360179 | Msa0509060:CDS |
| GTTCCATATCACTTCAGCAC+AGG | 0.582775 | 3_4:+57360043 | Msa0509060:CDS |
| GAAGGAACATCCTTAGGTCG+AGG | 0.583650 | 3_4:-57360165 | None:intergenic |
| GGGGACGTTGTTTCTGCTCG+AGG | 0.584630 | 3_4:-57360620 | None:intergenic |
| CCATTTCGAAATCGAATCAA+CGG | 0.586267 | 3_4:-57358288 | None:intergenic |
| GAAGAGTAAGAATTATGATG+AGG | 0.589498 | 3_4:+57358943 | Msa0509060:CDS |
| TCTTCACACAAAGGAAGCCA+TGG | 0.589915 | 3_4:+57360695 | Msa0509060:CDS |
| AATCAACATGAAGGAAGCAA+TGG | 0.596936 | 3_4:+57360332 | Msa0509060:CDS |
| ACCGGAGCCAAGGGAGAAGA+GGG | 0.599523 | 3_4:-57358372 | None:intergenic |
| GTGGAAAATGCTTGTCACCA+CGG | 0.601602 | 3_4:+57360294 | Msa0509060:CDS |
| AAACCTCAAACTAGTTCCAA+AGG | 0.602366 | 3_4:-57360799 | None:intergenic |
| TCAGATATCAACACCTACAC+CGG | 0.608000 | 3_4:+57358343 | Msa0509060:CDS |
| GCAGAAAATGCATGCCATCA+CGG | 0.608515 | 3_4:+57359835 | Msa0509060:CDS |
| ACCAGGGAACAACAGTGGAA+AGG | 0.609660 | 3_4:+57360563 | Msa0509060:CDS |
| AGACCCCACAATCAACATGA+AGG | 0.609900 | 3_4:+57360323 | Msa0509060:CDS |
| CAGGTTTGTTGACACTGCCA+TGG | 0.613822 | 3_4:+57359798 | Msa0509060:CDS |
| TAGTTCTCAACAACGCACTC+GGG | 0.615153 | 3_4:-57358856 | None:intergenic |
| TGAAGTGATATGGAACCGCT+TGG | 0.625536 | 3_4:-57360036 | None:intergenic |
| AATAGCGGAAAGGAATTCGG+TGG | 0.630479 | 3_4:+57360438 | Msa0509060:CDS |
| AAAGCACCAGGGAACAACAG+TGG | 0.630657 | 3_4:+57360558 | Msa0509060:CDS |
| ATTCATCCACAGGCTCTGCA+AGG | 0.634699 | 3_4:-57359518 | None:intergenic |
| ACTGAAGCAGGAGAATGCAC+CGG | 0.634906 | 3_4:+57360410 | Msa0509060:CDS |
| ATAGCGGAAAGGAATTCGGT+GGG | 0.635695 | 3_4:+57360439 | Msa0509060:CDS |
| TAGGATCTACCAGTCCGTGA+TGG | 0.636006 | 3_4:-57359849 | None:intergenic |
| TGAGCCAACTCTTCACACAA+AGG | 0.637710 | 3_4:+57360686 | Msa0509060:CDS |
| GACAAAGAAAATAAACCAAG+CGG | 0.641858 | 3_4:+57360021 | Msa0509060:CDS |
| GAATAGCCTTGCAGAGCCTG+TGG | 0.649505 | 3_4:+57359512 | Msa0509060:intron |
| ACCGGAGAACAATAGCGGAA+AGG | 0.650433 | 3_4:+57360428 | Msa0509060:CDS |
| AAAATCGCGAGGAAAGTCAA+AGG | 0.659214 | 3_4:+57360650 | Msa0509060:CDS |
| ACAGTGGAAAGGAACTCAGT+GGG | 0.668654 | 3_4:+57360574 | Msa0509060:CDS |
| TCATAATTCAAAGTTCAGAG+AGG | 0.673655 | 3_4:+57360221 | Msa0509060:CDS |
| CTTCAGCACAGGAATGAAGG+TGG | 0.680703 | 3_4:+57360054 | Msa0509060:CDS |
| GATGACCTCAAACAGAAACA+AGG | 0.694687 | 3_4:+57360486 | Msa0509060:CDS |
| AATGCACCGGAGAACAATAG+CGG | 0.695043 | 3_4:+57360423 | Msa0509060:CDS |
| AACAGTGGAAAGGAACTCAG+TGG | 0.696657 | 3_4:+57360573 | Msa0509060:CDS |
| GCACCACCGTGTCACCGCCG+CGG | 0.698393 | 3_4:+57358259 | Msa0509060:five_prime_UTR |
| TTGCCGCGGCGGTGACACGG+TGG | 0.698444 | 3_4:-57358262 | None:intergenic |
| GGTGTTGATATCTGACAATG+AGG | 0.703385 | 3_4:-57358335 | None:intergenic |
| GTTCCAAAGGAAGAAACGTG+CGG | 0.713350 | 3_4:-57360786 | None:intergenic |
| GACCTCAAACAGAAACAAGG+AGG | 0.727279 | 3_4:+57360489 | Msa0509060:CDS |
| TTTCGAAATCGAATCAACGG+CGG | 0.733899 | 3_4:-57358285 | None:intergenic |
| TGAAGCAGGAGAAAGCACCA+GGG | 0.751798 | 3_4:+57360547 | Msa0509060:CDS |
| TTGTGGGGTCTACTAAACCG+TGG | 0.816809 | 3_4:-57360311 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTCAATTTTTTCAAAAG+GGG | - | chr3_4:57358684-57358703 | None:intergenic | 15.0% |
| !!! | CAAATTCAATTTTTTCAAAA+GGG | - | chr3_4:57358685-57358704 | None:intergenic | 15.0% |
| !! | AAAAAATTGAATTTGCAAAA+TGG | + | chr3_4:57358690-57358709 | Msa0509060:intron | 15.0% |
| !! | AAAAATTGAATTTGCAAAAT+GGG | + | chr3_4:57358691-57358710 | Msa0509060:intron | 15.0% |
| !! | AGCATAATATAATCAAAATT+CGG | - | chr3_4:57359090-57359109 | None:intergenic | 15.0% |
| !!! | GCAAATTCAATTTTTTCAAA+AGG | - | chr3_4:57358686-57358705 | None:intergenic | 20.0% |
| !! | AGTATTATTATGTTAGATTC+AGG | + | chr3_4:57358747-57358766 | Msa0509060:intron | 20.0% |
| !! | TTAATCAAATTGGAACTAAA+CGG | + | chr3_4:57358885-57358904 | Msa0509060:CDS | 20.0% |
| !!! | TTCAATTTATTCTAGTGTTT+TGG | + | chr3_4:57359027-57359046 | Msa0509060:intron | 20.0% |
| !! | ATTATATTATGCTTGAAACT+TGG | + | chr3_4:57359097-57359116 | Msa0509060:intron | 20.0% |
| !!! | TTGTTTTTAATTTAGCAGAT+TGG | + | chr3_4:57359128-57359147 | Msa0509060:intron | 20.0% |
| !! | TCAAGAAAGTTATCTAAATT+TGG | + | chr3_4:57359464-57359483 | Msa0509060:intron | 20.0% |
| !!! | TTCAACAAGAGAAATTATTT+TGG | - | chr3_4:57359495-57359514 | None:intergenic | 20.0% |
| !!! | TGTCATTTATTTGTTATTCT+TGG | + | chr3_4:57359641-57359660 | Msa0509060:intron | 20.0% |
| !! | ATAAAATGTTATACAACATC+AGG | + | chr3_4:57359693-57359712 | Msa0509060:intron | 20.0% |
| !!! | AGTTTTTGTTGATGAAAATT+TGG | + | chr3_4:57359999-57360018 | Msa0509060:CDS | 20.0% |
| ! | ACTATGGAAGTTAATCAAAT+TGG | + | chr3_4:57358875-57358894 | Msa0509060:CDS | 25.0% |
| ! | AACACTAGAATAAATTGAAC+AGG | - | chr3_4:57359026-57359045 | None:intergenic | 25.0% |
| ! | ATAACAACTCATTCAACAAT+AGG | - | chr3_4:57359236-57359255 | None:intergenic | 25.0% |
| ! | GTTATTTGAACAACAGAAAT+TGG | + | chr3_4:57359251-57359270 | Msa0509060:intron | 25.0% |
| ! | GGTAAATTATGTTCAATATC+AGG | - | chr3_4:57359410-57359429 | None:intergenic | 25.0% |
| !!! | TTTCTTGACAACTTTTTAAG+TGG | - | chr3_4:57359452-57359471 | None:intergenic | 25.0% |
| ! | AATAAATGACAAAAACAGCA+TGG | - | chr3_4:57359632-57359651 | None:intergenic | 25.0% |
| !!! | TATTTGTTATTCTTGGTACT+TGG | + | chr3_4:57359648-57359667 | Msa0509060:intron | 25.0% |
| ! | AGATCCTACAATAAATATGA+AGG | + | chr3_4:57359864-57359883 | Msa0509060:CDS | 25.0% |
| ! | ATGACATAAACAACATGTTT+GGG | + | chr3_4:57360355-57360374 | Msa0509060:CDS | 25.0% |
| ! | TTCTTTCTAACAAAGTCTAT+TGG | - | chr3_4:57360384-57360403 | None:intergenic | 25.0% |
| ! | TAGACTTTGTTAGAAAGAAA+AGG | + | chr3_4:57360385-57360404 | Msa0509060:CDS | 25.0% |
| ! | GAAAAAAAGATTATTGAAGC+AGG | + | chr3_4:57360533-57360552 | Msa0509060:CDS | 25.0% |
| !! | TTTTCCTTGAGTGTTTTTGA+GGG | - | chr3_4:57358549-57358568 | None:intergenic | 30.0% |
| !! | TTTTTCCTTGAGTGTTTTTG+AGG | - | chr3_4:57358550-57358569 | None:intergenic | 30.0% |
| ATTTACGTTATCTTCGTGTT+TGG | + | chr3_4:57358631-57358650 | Msa0509060:CDS | 30.0% | |
| ATTCTAATTCACTAACCAAG+TGG | - | chr3_4:57358659-57358678 | None:intergenic | 30.0% | |
| !! | TGAATTTGCAAAATGGGTTT+TGG | + | chr3_4:57358697-57358716 | Msa0509060:intron | 30.0% |
| !! | GAATTTGCAAAATGGGTTTT+GGG | + | chr3_4:57358698-57358717 | Msa0509060:intron | 30.0% |
| ! | GATTCAGGAATTTTGTGATT+AGG | + | chr3_4:57358762-57358781 | Msa0509060:intron | 30.0% |
| !!! | GTGATTTTTTTCTGTGTGAT+TGG | + | chr3_4:57358813-57358832 | Msa0509060:intron | 30.0% |
| GAAGAGTAAGAATTATGATG+AGG | + | chr3_4:57358943-57358962 | Msa0509060:CDS | 30.0% | |
| GCAGAGAAAATGTATCATAT+GGG | + | chr3_4:57358965-57358984 | Msa0509060:CDS | 30.0% | |
| ATTAAAACTAGCTACACTGA+TGG | - | chr3_4:57359675-57359694 | None:intergenic | 30.0% | |
| ATCATACAGTTGTAATCAAC+AGG | + | chr3_4:57359779-57359798 | Msa0509060:CDS | 30.0% | |
| GTCTCCTTCATATTTATTGT+AGG | - | chr3_4:57359871-57359890 | None:intergenic | 30.0% | |
| GACAAAGAAAATAAACCAAG+CGG | + | chr3_4:57360021-57360040 | Msa0509060:CDS | 30.0% | |
| CAGATATATATTGACGATGA+AGG | + | chr3_4:57360099-57360118 | Msa0509060:CDS | 30.0% | |
| GGTTCTACTTCAAAAGTAAA+TGG | + | chr3_4:57360132-57360151 | Msa0509060:CDS | 30.0% | |
| TCATAATTCAAAGTTCAGAG+AGG | + | chr3_4:57360221-57360240 | Msa0509060:CDS | 30.0% | |
| GATGACATAAACAACATGTT+TGG | + | chr3_4:57360354-57360373 | Msa0509060:CDS | 30.0% | |
| ! | TTTTTCCGAGCAAAATCTAT+TGG | - | chr3_4:57360519-57360538 | None:intergenic | 30.0% |
| ! | TAATATGCCTCTGGATTTTT+AGG | + | chr3_4:57360737-57360756 | Msa0509060:CDS | 30.0% |
| !! | TTAGGAACAAAGTGTTTTTG+TGG | + | chr3_4:57360755-57360774 | Msa0509060:exon | 30.0% |
| CCATTTCGAAATCGAATCAA+CGG | - | chr3_4:57358291-57358310 | None:intergenic | 35.0% | |
| CAGAGGAATCAAAAAGATGA+AGG | + | chr3_4:57358515-57358534 | Msa0509060:intron | 35.0% | |
| !! | TTGTGATTAGGTTGAAGCAA+AGG | + | chr3_4:57358774-57358793 | Msa0509060:intron | 35.0% |
| !! | TGTGATTAGGTTGAAGCAAA+GGG | + | chr3_4:57358775-57358794 | Msa0509060:intron | 35.0% |
| ! | TTTTCTGTGTGATTGGTAGA+TGG | + | chr3_4:57358820-57358839 | Msa0509060:intron | 35.0% |
| GGCAGAGAAAATGTATCATA+TGG | + | chr3_4:57358964-57358983 | Msa0509060:CDS | 35.0% | |
| !!! | GTGTTTTGGTGCTTGTTTTT+AGG | + | chr3_4:57359041-57359060 | Msa0509060:intron | 35.0% |
| !!! | GGTGCTTGTTTTTAGGAAAT+AGG | + | chr3_4:57359048-57359067 | Msa0509060:intron | 35.0% |
| !! | AACATGACTTGTGTGGATTT+TGG | - | chr3_4:57359204-57359223 | None:intergenic | 35.0% |
| AATTAACCGCCAACTACATT+AGG | - | chr3_4:57359292-57359311 | None:intergenic | 35.0% | |
| AACTTCGTTAATCACGAACT+TGG | - | chr3_4:57359361-57359380 | None:intergenic | 35.0% | |
| CGTGATTAACGAAGTTATGT+TGG | + | chr3_4:57359365-57359384 | Msa0509060:intron | 35.0% | |
| AATGACAAAAACAGCATGGA+TGG | - | chr3_4:57359628-57359647 | None:intergenic | 35.0% | |
| TTATGTGATTTCTTGCCCAA+AGG | - | chr3_4:57359940-57359959 | None:intergenic | 35.0% | |
| ! | ATCTGAAGTGATTCTTGTTG+AGG | - | chr3_4:57360084-57360103 | None:intergenic | 35.0% |
| ! | ATGTTCCTTCTGAGAAATCT+AGG | + | chr3_4:57360178-57360197 | Msa0509060:CDS | 35.0% |
| ! | TGTTCCTTCTGAGAAATCTA+GGG | + | chr3_4:57360179-57360198 | Msa0509060:CDS | 35.0% |
| ACAGTTGTTCGTAGATTTGT+TGG | + | chr3_4:57360246-57360265 | Msa0509060:CDS | 35.0% | |
| !!! | ATTTGTTGGTTCTGCCATTT+TGG | + | chr3_4:57360260-57360279 | Msa0509060:CDS | 35.0% |
| AATCAACATGAAGGAAGCAA+TGG | + | chr3_4:57360332-57360351 | Msa0509060:CDS | 35.0% | |
| ! | AACAATAGCGGAAAGGAATT+CGG | + | chr3_4:57360435-57360454 | Msa0509060:CDS | 35.0% |
| ! | GTAAGCCAATAGATTTTGCT+CGG | + | chr3_4:57360511-57360530 | Msa0509060:CDS | 35.0% |
| CATCTTGTTAATGTCATCCA+TGG | - | chr3_4:57360715-57360734 | None:intergenic | 35.0% | |
| CAAGATGTTTAATATGCCTC+TGG | + | chr3_4:57360728-57360747 | Msa0509060:CDS | 35.0% | |
| CTTTGTTCCTAAAAATCCAG+AGG | - | chr3_4:57360747-57360766 | None:intergenic | 35.0% | |
| AAACCTCAAACTAGTTCCAA+AGG | - | chr3_4:57360802-57360821 | None:intergenic | 35.0% | |
| !! | GTACCAATTCATCTGCTTTT+AGG | + | chr3_4:57360822-57360841 | Msa0509060:three_prime_UTR | 35.0% |
| !! | CTACGCGACTCTTTAAAATG+AGG | - | chr3_4:57358217-57358236 | None:intergenic | 40.0% |
| !! | CTCATTTTAAAGAGTCGCGT+AGG | + | chr3_4:57358215-57358234 | Msa0509060:five_prime_UTR | 40.0% |
| TTTCGAAATCGAATCAACGG+CGG | - | chr3_4:57358288-57358307 | None:intergenic | 40.0% | |
| !! | CCGTTGATTCGATTTCGAAA+TGG | + | chr3_4:57358288-57358307 | Msa0509060:exon | 40.0% |
| !! | GGTGTTGATATCTGACAATG+AGG | - | chr3_4:57358338-57358357 | None:intergenic | 40.0% |
| TCAGATATCAACACCTACAC+CGG | + | chr3_4:57358343-57358362 | Msa0509060:CDS | 40.0% | |
| AGAGAGAGAGAGAAGATTAC+CGG | - | chr3_4:57358393-57358412 | None:intergenic | 40.0% | |
| ATTCATTTCGAACACTGCAG+AGG | + | chr3_4:57358498-57358517 | Msa0509060:intron | 40.0% | |
| TCTTCCCTCAAAAACACTCA+AGG | + | chr3_4:57358542-57358561 | Msa0509060:CDS | 40.0% | |
| ATAGTTCTCAACAACGCACT+CGG | - | chr3_4:57358860-57358879 | None:intergenic | 40.0% | |
| ! | CAAGGTAAACATGACTTGTG+TGG | - | chr3_4:57359211-57359230 | None:intergenic | 40.0% |
| CTCATTCAACAATAGGAGCA+AGG | - | chr3_4:57359229-57359248 | None:intergenic | 40.0% | |
| TAGTCACCACCTAATGTAGT+TGG | + | chr3_4:57359280-57359299 | Msa0509060:intron | 40.0% | |
| GTTAATCACGAACTTGGACA+TGG | - | chr3_4:57359355-57359374 | None:intergenic | 40.0% | |
| GGTTAATGCAGTTCAGATAG+AGG | - | chr3_4:57359431-57359450 | None:intergenic | 40.0% | |
| GATTTCTGCAATTCATCCAC+AGG | - | chr3_4:57359531-57359550 | None:intergenic | 40.0% | |
| GAAGCGCAAGAAGAAAATTC+AGG | + | chr3_4:57359575-57359594 | Msa0509060:CDS | 40.0% | |
| GATGAGAGCAAGAAATTTCG+TGG | + | chr3_4:57359754-57359773 | Msa0509060:CDS | 40.0% | |
| CATGCTGTTAATGGCATTCA+TGG | - | chr3_4:57359893-57359912 | None:intergenic | 40.0% | |
| CTCACTGAACATGCTGTTAA+TGG | - | chr3_4:57359902-57359921 | None:intergenic | 40.0% | |
| CCATTAGAGACTGTTCCTTT+GGG | + | chr3_4:57359922-57359941 | Msa0509060:CDS | 40.0% | |
| ATTCCTGTGCTGAAGTGATA+TGG | - | chr3_4:57360049-57360068 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTTTCCTCGACCTA+AGG | + | chr3_4:57360155-57360174 | Msa0509060:CDS | 40.0% |
| TTCTCAGAAGGAACATCCTT+AGG | - | chr3_4:57360174-57360193 | None:intergenic | 40.0% | |
| ATGTCCCTAGATTTCTCAGA+AGG | - | chr3_4:57360186-57360205 | None:intergenic | 40.0% | |
| ! | TTCTGAGAAATCTAGGGACA+TGG | + | chr3_4:57360185-57360204 | Msa0509060:CDS | 40.0% |
| !!! | TGCCATTTTGGATGAACCAA+AGG | + | chr3_4:57360272-57360291 | Msa0509060:CDS | 40.0% |
| ! | CACCTTTGGTTCATCCAAAA+TGG | - | chr3_4:57360277-57360296 | None:intergenic | 40.0% |
| ! | CATTTTGGATGAACCAAAGG+TGG | + | chr3_4:57360275-57360294 | Msa0509060:CDS | 40.0% |
| ! | TGACAAGCATTTTCCACCTT+TGG | - | chr3_4:57360291-57360310 | None:intergenic | 40.0% |
| ! | CTTCCTTCATGTTGATTGTG+GGG | - | chr3_4:57360329-57360348 | None:intergenic | 40.0% |
| ! | GCTTCCTTCATGTTGATTGT+GGG | - | chr3_4:57360330-57360349 | None:intergenic | 40.0% |
| ! | TGCTTCCTTCATGTTGATTG+TGG | - | chr3_4:57360331-57360350 | None:intergenic | 40.0% |
| AAAGAAAAGGTCACTGAAGC+AGG | + | chr3_4:57360398-57360417 | Msa0509060:CDS | 40.0% | |
| GATGACCTCAAACAGAAACA+AGG | + | chr3_4:57360486-57360505 | Msa0509060:CDS | 40.0% | |
| !! | TACCTCCTTGTTTCTGTTTG+AGG | - | chr3_4:57360494-57360513 | None:intergenic | 40.0% |
| !! | CAGTGGGTTTTCAATACTTG+CGG | + | chr3_4:57360590-57360609 | Msa0509060:CDS | 40.0% |
| !! | TTTGACTTTCCTCGCGATTT+TGG | - | chr3_4:57360651-57360670 | None:intergenic | 40.0% |
| AAAATCGCGAGGAAAGTCAA+AGG | + | chr3_4:57360650-57360669 | Msa0509060:CDS | 40.0% | |
| !! | CTTCCTTTGGAACTAGTTTG+AGG | + | chr3_4:57360796-57360815 | Msa0509060:three_prime_UTR | 40.0% |
| CCACCTAAAAGCAGATGAAT+TGG | - | chr3_4:57360828-57360847 | None:intergenic | 40.0% | |
| !! | CCAATTCATCTGCTTTTAGG+TGG | + | chr3_4:57360825-57360844 | Msa0509060:three_prime_UTR | 40.0% |
| GCGCATTGTTGCAAGAATTC+AGG | - | chr3_4:57358576-57358595 | None:intergenic | 45.0% | |
| ! | TCGATCGAGCTCGAATGTTT+TGG | - | chr3_4:57358598-57358617 | None:intergenic | 45.0% |
| TAGTTCTCAACAACGCACTC+GGG | - | chr3_4:57358859-57358878 | None:intergenic | 45.0% | |
| GAGTGCGTTGTTGAGAACTA+TGG | + | chr3_4:57358859-57358878 | Msa0509060:CDS | 45.0% | |
| TCACCACCTAATGTAGTTGG+CGG | + | chr3_4:57359283-57359302 | Msa0509060:intron | 45.0% | |
| TAACCGCCAACTACATTAGG+TGG | - | chr3_4:57359289-57359308 | None:intergenic | 45.0% | |
| CAGCATGGATGGACACATAA+AGG | - | chr3_4:57359617-57359636 | None:intergenic | 45.0% | |
| TTTGTTGACACTGCCATGGA+TGG | + | chr3_4:57359802-57359821 | Msa0509060:CDS | 45.0% | |
| TGCTTCAGACTTTCCATCCA+TGG | - | chr3_4:57359818-57359837 | None:intergenic | 45.0% | |
| GCAGAAAATGCATGCCATCA+CGG | + | chr3_4:57359835-57359854 | Msa0509060:CDS | 45.0% | |
| GCCATTAGAGACTGTTCCTT+TGG | + | chr3_4:57359921-57359940 | Msa0509060:CDS | 45.0% | |
| CCCAAAGGAACAGTCTCTAA+TGG | - | chr3_4:57359925-57359944 | None:intergenic | 45.0% | |
| TGAAGTGATATGGAACCGCT+TGG | - | chr3_4:57360039-57360058 | None:intergenic | 45.0% | |
| GTTCCATATCACTTCAGCAC+AGG | + | chr3_4:57360043-57360062 | Msa0509060:CDS | 45.0% | |
| TCACTTCAGCACAGGAATGA+AGG | + | chr3_4:57360051-57360070 | Msa0509060:CDS | 45.0% | |
| GTGGAAAATGCTTGTCACCA+CGG | + | chr3_4:57360294-57360313 | Msa0509060:CDS | 45.0% | |
| AGACCCCACAATCAACATGA+AGG | + | chr3_4:57360323-57360342 | Msa0509060:CDS | 45.0% | |
| AATGCACCGGAGAACAATAG+CGG | + | chr3_4:57360423-57360442 | Msa0509060:CDS | 45.0% | |
| TCCTTTCCGCTATTGTTCTC+CGG | - | chr3_4:57360432-57360451 | None:intergenic | 45.0% | |
| ! | AATAGCGGAAAGGAATTCGG+TGG | + | chr3_4:57360438-57360457 | Msa0509060:CDS | 45.0% |
| ! | ATAGCGGAAAGGAATTCGGT+GGG | + | chr3_4:57360439-57360458 | Msa0509060:CDS | 45.0% |
| GGTCATCATCATCATCAGCA+AGG | - | chr3_4:57360473-57360492 | None:intergenic | 45.0% | |
| GACCTCAAACAGAAACAAGG+AGG | + | chr3_4:57360489-57360508 | Msa0509060:CDS | 45.0% | |
| AACAGTGGAAAGGAACTCAG+TGG | + | chr3_4:57360573-57360592 | Msa0509060:CDS | 45.0% | |
| ACAGTGGAAAGGAACTCAGT+GGG | + | chr3_4:57360574-57360593 | Msa0509060:CDS | 45.0% | |
| !! | TTCCTCGCGATTTTGGTAGT+GGG | - | chr3_4:57360644-57360663 | None:intergenic | 45.0% |
| !! | TTTCCTCGCGATTTTGGTAG+TGG | - | chr3_4:57360645-57360664 | None:intergenic | 45.0% |
| TGAGCCAACTCTTCACACAA+AGG | + | chr3_4:57360686-57360705 | Msa0509060:CDS | 45.0% | |
| GCTTCCTTTGTGTGAAGAGT+TGG | - | chr3_4:57360693-57360712 | None:intergenic | 45.0% | |
| TCTTCACACAAAGGAAGCCA+TGG | + | chr3_4:57360695-57360714 | Msa0509060:CDS | 45.0% | |
| TATCCGCACGTTTCTTCCTT+TGG | + | chr3_4:57360783-57360802 | Msa0509060:three_prime_UTR | 45.0% | |
| GTTCCAAAGGAAGAAACGTG+CGG | - | chr3_4:57360789-57360808 | None:intergenic | 45.0% | |
| GAGAAGATTACCGGAGCCAA+GGG | - | chr3_4:57358384-57358403 | None:intergenic | 50.0% | |
| AGAGAAGATTACCGGAGCCA+AGG | - | chr3_4:57358385-57358404 | None:intergenic | 50.0% | |
| ! | TCTTCGTGTTTGGCTCCACT+TGG | + | chr3_4:57358641-57358660 | Msa0509060:CDS | 50.0% |
| ATTCATCCACAGGCTCTGCA+AGG | - | chr3_4:57359521-57359540 | None:intergenic | 50.0% | |
| AGCTGCTGATAGACGCGTAA+AGG | + | chr3_4:57359723-57359742 | Msa0509060:CDS | 50.0% | |
| !! | CAGGTTTGTTGACACTGCCA+TGG | + | chr3_4:57359798-57359817 | Msa0509060:CDS | 50.0% |
| AAATGCATGCCATCACGGAC+TGG | + | chr3_4:57359840-57359859 | Msa0509060:CDS | 50.0% | |
| TAGGATCTACCAGTCCGTGA+TGG | - | chr3_4:57359852-57359871 | None:intergenic | 50.0% | |
| CTTCAGCACAGGAATGAAGG+TGG | + | chr3_4:57360054-57360073 | Msa0509060:CDS | 50.0% | |
| GACGATGAAGGACGTTCAGA+AGG | + | chr3_4:57360111-57360130 | Msa0509060:CDS | 50.0% | |
| GAAGGAACATCCTTAGGTCG+AGG | - | chr3_4:57360168-57360187 | None:intergenic | 50.0% | |
| TTGTGGGGTCTACTAAACCG+TGG | - | chr3_4:57360314-57360333 | None:intergenic | 50.0% | |
| ACTGAAGCAGGAGAATGCAC+CGG | + | chr3_4:57360410-57360429 | Msa0509060:CDS | 50.0% | |
| ! | ACCGGAGAACAATAGCGGAA+AGG | + | chr3_4:57360428-57360447 | Msa0509060:CDS | 50.0% |
| !! | TTGAAGCAGGAGAAAGCACC+AGG | + | chr3_4:57360546-57360565 | Msa0509060:CDS | 50.0% |
| !! | TGAAGCAGGAGAAAGCACCA+GGG | + | chr3_4:57360547-57360566 | Msa0509060:CDS | 50.0% |
| ! | AAAGCACCAGGGAACAACAG+TGG | + | chr3_4:57360558-57360577 | Msa0509060:CDS | 50.0% |
| ACCAGGGAACAACAGTGGAA+AGG | + | chr3_4:57360563-57360582 | Msa0509060:CDS | 50.0% | |
| TCCTTTCCACTGTTGTTCCC+TGG | - | chr3_4:57360567-57360586 | None:intergenic | 50.0% | |
| !!! | TCCTCGCGATTTTGGTAGTG+GGG | - | chr3_4:57360643-57360662 | None:intergenic | 50.0% |
| AAGAGGGTCTTTGCCGGTGT+AGG | - | chr3_4:57358359-57358378 | None:intergenic | 55.0% | |
| AGGGAGAAGAGGGTCTTTGC+CGG | - | chr3_4:57358365-57358384 | None:intergenic | 55.0% | |
| GCAAAGACCCTCTTCTCCCT+TGG | + | chr3_4:57358365-57358384 | Msa0509060:CDS | 55.0% | |
| ! | GAATAGCCTTGCAGAGCCTG+TGG | + | chr3_4:57359512-57359531 | Msa0509060:intron | 55.0% |
| !!! | CCTCGCGATTTTGGTAGTGG+GGG | - | chr3_4:57360642-57360661 | None:intergenic | 55.0% |
| ACCCTCTTCTCCCTTGGCTC+CGG | + | chr3_4:57358371-57358390 | Msa0509060:CDS | 60.0% | |
| ACCGGAGCCAAGGGAGAAGA+GGG | - | chr3_4:57358375-57358394 | None:intergenic | 60.0% | |
| TACCGGAGCCAAGGGAGAAG+AGG | - | chr3_4:57358376-57358395 | None:intergenic | 60.0% | |
| !! | GGGGACGTTGTTTCTGCTCG+AGG | - | chr3_4:57360623-57360642 | None:intergenic | 60.0% |
| CCCCCACTACCAAAATCGCG+AGG | + | chr3_4:57360639-57360658 | Msa0509060:CDS | 60.0% | |
| CGAATCAACGGCGGTTGCCG+CGG | - | chr3_4:57358279-57358298 | None:intergenic | 65.0% | |
| ATCAACGGCGGTTGCCGCGG+CGG | - | chr3_4:57358276-57358295 | None:intergenic | 70.0% | |
| GCACCACCGTGTCACCGCCG+CGG | + | chr3_4:57358259-57358278 | Msa0509060:five_prime_UTR | 75.0% | |
| TTGCCGCGGCGGTGACACGG+TGG | - | chr3_4:57358265-57358284 | None:intergenic | 75.0% | |
| CGGTTGCCGCGGCGGTGACA+CGG | - | chr3_4:57358268-57358287 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 57358191 | 57360856 | 57358191 | ID=Msa0509060;Name=Msa0509060 |
| chr3_4 | mRNA | 57358191 | 57360856 | 57358191 | ID=Msa0509060-mRNA-1;Parent=Msa0509060;Name=Msa0509060-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116|1|1|1|1|1|5|98|503 |
| chr3_4 | exon | 57358191 | 57358392 | 57358191 | ID=Msa0509060-mRNA-1:exon:13064;Parent=Msa0509060-mRNA-1 |
| chr3_4 | exon | 57358518 | 57358662 | 57358518 | ID=Msa0509060-mRNA-1:exon:13065;Parent=Msa0509060-mRNA-1 |
| chr3_4 | exon | 57358839 | 57358996 | 57358839 | ID=Msa0509060-mRNA-1:exon:13066;Parent=Msa0509060-mRNA-1 |
| chr3_4 | exon | 57359518 | 57359596 | 57359518 | ID=Msa0509060-mRNA-1:exon:13067;Parent=Msa0509060-mRNA-1 |
| chr3_4 | exon | 57359715 | 57360856 | 57359715 | ID=Msa0509060-mRNA-1:exon:13068;Parent=Msa0509060-mRNA-1 |
| chr3_4 | five_prime_UTR | 57358191 | 57358306 | 57358191 | ID=Msa0509060-mRNA-1:five_prime_utr;Parent=Msa0509060-mRNA-1 |
| chr3_4 | CDS | 57358307 | 57358392 | 57358307 | ID=Msa0509060-mRNA-1:cds;Parent=Msa0509060-mRNA-1 |
| chr3_4 | CDS | 57358518 | 57358662 | 57358518 | ID=Msa0509060-mRNA-1:cds;Parent=Msa0509060-mRNA-1 |
| chr3_4 | CDS | 57358839 | 57358996 | 57358839 | ID=Msa0509060-mRNA-1:cds;Parent=Msa0509060-mRNA-1 |
| chr3_4 | CDS | 57359518 | 57359596 | 57359518 | ID=Msa0509060-mRNA-1:cds;Parent=Msa0509060-mRNA-1 |
| chr3_4 | CDS | 57359715 | 57360758 | 57359715 | ID=Msa0509060-mRNA-1:cds;Parent=Msa0509060-mRNA-1 |
| chr3_4 | three_prime_UTR | 57360759 | 57360856 | 57360759 | ID=Msa0509060-mRNA-1:three_prime_utr;Parent=Msa0509060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
