AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0466410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466410 MtrunA17_Chr3g0119271 93.931 379 18 2 1 375 1 378 0.0 678
Msa0466410 MtrunA17_Chr4g0009731 31.522 276 155 10 56 320 6 258 4.90e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0466410 AT3G51980.1 55.348 374 161 2 3 372 8 379 9.86e-137 395
Msa0466410 AT5G02150.1 29.470 302 176 11 56 347 6 280 1.92e-17 82.8
Msa0466410 AT5G02150.3 29.470 302 176 11 56 347 6 280 1.92e-17 82.8
Msa0466410 AT3G09350.1 29.213 267 172 7 56 320 6 257 2.08e-15 77.4
Msa0466410 AT3G53800.1 27.922 308 165 8 56 329 6 290 6.46e-15 75.9
Msa0466410 AT3G53800.2 30.120 249 145 6 103 329 10 251 3.41e-14 73.2
Msa0466410 AT5G02150.2 33.645 214 123 8 135 343 42 241 5.16e-14 72.4
Msa0466410 AT3G09350.4 34.359 195 117 5 127 320 37 221 1.01e-12 68.9
Msa0466410 AT3G09350.3 34.359 195 117 5 127 320 37 221 1.01e-12 68.9
Msa0466410 AT3G09350.2 34.359 195 117 5 127 320 37 221 1.01e-12 68.9

Find 79 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTAATGCCTTCTTCTA+TGG 0.201154 3_3:+67029307 None:intergenic
TTTAGGGACTTATGTGCTTT+AGG 0.269168 3_3:-67028355 Msa0466410:CDS
GAATAATGCGTCTACTTCTT+TGG 0.270695 3_3:-67031280 Msa0466410:CDS
ACTCTCAAGGTTGATAATTA+TGG 0.284619 3_3:-67029342 Msa0466410:CDS
GGAGTGCTTTACTTATTTAT+AGG 0.286333 3_3:-67031918 Msa0466410:five_prime_UTR
GCAACTGCTGCATGGGTTCT+TGG 0.322183 3_3:-67029907 Msa0466410:CDS
AGCTGGAGGTTTGATGCTTC+AGG 0.334540 3_3:-67029222 Msa0466410:intron
GAACTTAATCACCATGATTC+TGG 0.337700 3_3:-67029937 Msa0466410:CDS
AGTGAGGTTGTTGTCTGTTT+CGG 0.341684 3_3:+67031760 None:intergenic
GAGTTGACATCCTTAGATTA+TGG 0.356023 3_3:-67028185 Msa0466410:three_prime_UTR
CGATGGCGGGTTTCCTTCAA+TGG 0.363526 3_3:-67031663 Msa0466410:CDS
TTGATAATTATGGTAAAATC+TGG 0.364174 3_3:-67029332 Msa0466410:CDS
CTGTTAGATTTAAACAAACT+TGG 0.368128 3_3:-67029982 Msa0466410:intron
ACAATTGTTGCATGATTTGA+TGG 0.390675 3_3:-67028311 Msa0466410:CDS
CTCTTTCCGACTCCGATGGC+GGG 0.393050 3_3:-67031676 Msa0466410:CDS
TCGACGGCAGTTGATAATAA+TGG 0.404340 3_3:+67031728 None:intergenic
TCAAATCTAGATGATGATAC+AGG 0.412030 3_3:+67028155 None:intergenic
AGATAGATACAGAGCTTTGT+TGG 0.429529 3_3:-67031256 Msa0466410:CDS
AGGGACAAGACCATAATCTA+AGG 0.431080 3_3:+67028175 None:intergenic
CTTTACTTATTTATAGGAGT+TGG 0.437798 3_3:-67031912 Msa0466410:five_prime_UTR
CATACCTGTTGCTGAAAAGT+TGG 0.441542 3_3:+67029865 None:intergenic
CAGCATCAAAATTGTGAGAA+AGG 0.443624 3_3:+67028125 None:intergenic
TTAAGAGTCTCTTGCAACTA+AGG 0.444194 3_3:-67028396 Msa0466410:CDS
TCTTGAGCTTGTTGAGCCAT+TGG 0.448659 3_3:-67031229 Msa0466410:CDS
TCGGAATAATTTAGCCAGTC+AGG 0.451248 3_3:-67029261 Msa0466410:CDS
CAATGGATAGCATGTTGCAC+TGG 0.464205 3_3:-67031646 Msa0466410:CDS
CCACAGACTTTAACAGATCC+TGG 0.468287 3_3:+67028973 None:intergenic
TTCAACCGACCTTGATCTCC+AGG 0.485779 3_3:-67028937 Msa0466410:CDS
TGCAACATGCTATCCATTGA+AGG 0.490686 3_3:+67031650 None:intergenic
CGACCTTGATCTCCAGGAAA+AGG 0.496260 3_3:-67028931 Msa0466410:intron
TTAGATTTAAACAAACTTGG+TGG 0.500809 3_3:-67029979 Msa0466410:intron
GTTGTTGTCTGTTTCGGCGA+CGG 0.505085 3_3:+67031766 None:intergenic
GCATGATTTGATGGCGGATG+AGG 0.511123 3_3:-67028302 Msa0466410:CDS
AACAAAGATACAAGCAAGAA+GGG 0.512016 3_3:+67031850 None:intergenic
CTTATTTATAGGAGTTGGCA+TGG 0.513444 3_3:-67031907 Msa0466410:five_prime_UTR
TAGATTTAAACAAACTTGGT+GGG 0.516287 3_3:-67029978 Msa0466410:CDS
GAGTCGGAAAGAGCGGCATC+CGG 0.516582 3_3:+67031686 None:intergenic
GCCGCTCTTTCCGACTCCGA+TGG 0.518427 3_3:-67031680 Msa0466410:CDS
CTATTCCAGGTCTTGGAACT+CGG 0.522629 3_3:-67029368 Msa0466410:intron
AAACAAAGATACAAGCAAGA+AGG 0.524186 3_3:+67031849 None:intergenic
ACTCGCTCTCATACTCTTCA+CGG 0.526349 3_3:-67031795 Msa0466410:CDS
TTACCATTTGCATTATCCAA+TGG 0.528194 3_3:+67031213 None:intergenic
GCTCTTTCCGACTCCGATGG+CGG 0.529221 3_3:-67031677 Msa0466410:CDS
GAATTGTTCTATGCTGAAGC+TGG 0.531227 3_3:-67029239 Msa0466410:CDS
ACGCTGTTTCAGCTTTGACT+CGG 0.535198 3_3:-67029280 Msa0466410:CDS
TATTAGAGCAACTGCTGCAT+GGG 0.537407 3_3:-67029914 Msa0466410:CDS
AAACATTTACCATAGAAAGC+TGG 0.539602 3_3:-67028230 Msa0466410:CDS
AAATCTGGTTCCATAGAAGA+AGG 0.545793 3_3:-67029317 Msa0466410:CDS
CGGAAAGAGCGGCATCCGGC+GGG 0.546815 3_3:+67031690 None:intergenic
GAGAGACTATGTAATGGATG+TGG 0.547171 3_3:-67028275 Msa0466410:CDS
GTATTAGAGCAACTGCTGCA+TGG 0.549978 3_3:-67029915 Msa0466410:CDS
TTGCTCTAATACCAGAATCA+TGG 0.552550 3_3:+67029926 None:intergenic
GGCATCCGGCGGGAGTAGAT+CGG 0.560168 3_3:+67031700 None:intergenic
TGATATCAAACTTCGGAGGA+AGG 0.564399 3_3:-67029072 Msa0466410:CDS
AGCATAGAACAATTCCTGAC+TGG 0.564526 3_3:+67029247 None:intergenic
GAGCCATTGGATAATGCAAA+TGG 0.568060 3_3:-67031216 Msa0466410:intron
GGATCAGAGAGACTATGTAA+TGG 0.571622 3_3:-67028281 Msa0466410:CDS
TGGAACTCGGTGTACTCTCA+AGG 0.571684 3_3:-67029355 Msa0466410:CDS
AGGAAACCCGCCATCGGAGT+CGG 0.575203 3_3:+67031670 None:intergenic
AGTTGATAATAATGGCTGAC+GGG 0.581532 3_3:+67031736 None:intergenic
CCAGGATCTGTTAAAGTCTG+TGG 0.581747 3_3:-67028973 Msa0466410:CDS
AATGGATAGCATGTTGCACT+GGG 0.584422 3_3:-67031645 Msa0466410:CDS
TTGTTCTATGCTGAAGCTGG+AGG 0.589290 3_3:-67029236 Msa0466410:CDS
TCGGAAAGAGCGGCATCCGG+CGG 0.589412 3_3:+67031689 None:intergenic
GGAAAATGTTCGTATTGAAG+TGG 0.592134 3_3:-67028254 Msa0466410:CDS
AGGAGTTGGCATGGAAGCTG+AGG 0.593753 3_3:-67031898 Msa0466410:five_prime_UTR
CAAGTATTGATATCAAACTT+CGG 0.604972 3_3:-67029079 Msa0466410:CDS
GCCATCGGAGTCGGAAAGAG+CGG 0.605513 3_3:+67031679 None:intergenic
CAGTTGATAATAATGGCTGA+CGG 0.608320 3_3:+67031735 None:intergenic
CAAATCTAGATGATGATACA+GGG 0.614135 3_3:+67028156 None:intergenic
ATAATGGCTGACGGGAAGTG+AGG 0.642518 3_3:+67031744 None:intergenic
TAAATCAGTCAATAGAAGCA+CGG 0.644107 3_3:+67029049 None:intergenic
GAGTAGATCGGATTCATCGA+CGG 0.645125 3_3:+67031712 None:intergenic
CATTGAAGGAAACCCGCCAT+CGG 0.646434 3_3:+67031664 None:intergenic
TGAATCCGATCTACTCCCGC+CGG 0.648772 3_3:-67031705 Msa0466410:CDS
CAAACTTGGTGGGCTTCATG+CGG 0.669848 3_3:-67029968 Msa0466410:CDS
ATTGTTGCATGATTTGATGG+CGG 0.681664 3_3:-67028308 Msa0466410:CDS
GTATTGATATCAAACTTCGG+AGG 0.727448 3_3:-67029076 Msa0466410:CDS
CGCTCTCATACTCTTCACGG+CGG 0.754940 3_3:-67031792 Msa0466410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAATTTATGTACTATT+TGG + chr3_3:67028889-67028908 None:intergenic 10.0%
!!! CTTTGTTTTCTATAATTAAA+TGG - chr3_3:67028069-67028088 Msa0466410:three_prime_UTR 15.0%
!! TGTATAGTTATTAATTATCA+CGG - chr3_3:67028290-67028309 Msa0466410:CDS 15.0%
!! TTTATTTATTTATGTGATTG+TGG - chr3_3:67028524-67028543 Msa0466410:intron 15.0%
!!! TAAACAAAAATGTACTTTTT+AGG - chr3_3:67029042-67029061 Msa0466410:CDS 15.0%
!! GATAATATTAAAACTTAGAT+AGG + chr3_3:67030710-67030729 None:intergenic 15.0%
!!! TATTGATACTTGAATTTTTT+AGG - chr3_3:67030786-67030805 Msa0466410:intron 15.0%
!! TTGATTTACTTTATTATCAA+AGG - chr3_3:67031306-67031325 Msa0466410:CDS 15.0%
!!! TACTATAATGTTTTTTCACT+TGG - chr3_3:67028742-67028761 Msa0466410:intron 20.0%
!!! ACTATAATGTTTTTTCACTT+GGG - chr3_3:67028743-67028762 Msa0466410:intron 20.0%
!!! ATTTATGTACTATTTGGTTT+AGG + chr3_3:67028883-67028902 None:intergenic 20.0%
!!! TTTTTGTTTATAAATGTGAC+CGG + chr3_3:67029032-67029051 None:intergenic 20.0%
!! CATTGAATACATAATGTATT+TGG - chr3_3:67029067-67029086 Msa0466410:CDS 20.0%
!!! TCTCAAAATCTGTTTTTTTT+AGG - chr3_3:67029340-67029359 Msa0466410:CDS 20.0%
!! TATGTATTCAAATATAGACT+TGG - chr3_3:67029636-67029655 Msa0466410:intron 20.0%
!! TGAATATTATGAACAAATGA+CGG + chr3_3:67029827-67029846 None:intergenic 20.0%
!! TTCAAATATCTCATAAGTAT+CGG + chr3_3:67030227-67030246 None:intergenic 20.0%
!!! TTGATAATTATGGTAAAATC+TGG - chr3_3:67030571-67030590 Msa0466410:intron 20.0%
!!! GAATTTTTTAGGATATTTTG+AGG - chr3_3:67030797-67030816 Msa0466410:intron 20.0%
!!! TCAAAATGTTTTGTTTTTCT+CGG + chr3_3:67031097-67031116 None:intergenic 20.0%
!! ACATTTGAGAACAAAAATTA+GGG - chr3_3:67031807-67031826 Msa0466410:CDS 20.0%
! CTTTACTTATTTATAGGAGT+TGG - chr3_3:67027991-67028010 Msa0466410:three_prime_UTR 25.0%
! ATAGTTATTAATTATCACGG+TGG - chr3_3:67028293-67028312 Msa0466410:CDS 25.0%
!!! TTGTTTTTGCTTTTTGTGTA+TGG - chr3_3:67028345-67028364 Msa0466410:CDS 25.0%
!! AATTTTCATCAATTCAGCAT+CGG + chr3_3:67028589-67028608 None:intergenic 25.0%
!!! GACTGTTTTTTTCTTTTTCT+AGG - chr3_3:67028968-67028987 Msa0466410:CDS 25.0%
!!! GCAAATTTTAGTAAAGTTAG+TGG - chr3_3:67028990-67029009 Msa0466410:CDS 25.0%
! CATTCAATGCTTAATGTATT+TGG + chr3_3:67029105-67029124 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3_3:67029165-67029184 Msa0466410:intron 25.0%
!! TCAGACCTTAAATACTTTTA+AGG - chr3_3:67029461-67029480 Msa0466410:intron 25.0%
!!! CATAGCCTTAAAAGTATTTA+AGG + chr3_3:67029469-67029488 None:intergenic 25.0%
!!! AATACTTTTAAGGCTATGTT+TGG - chr3_3:67029471-67029490 Msa0466410:intron 25.0%
! GTATATAAAGAACTTCACAT+GGG + chr3_3:67029791-67029810 None:intergenic 25.0%
! AGTATATAAAGAACTTCACA+TGG + chr3_3:67029792-67029811 None:intergenic 25.0%
! TTCTTTATATACTGTAGAAG+TGG - chr3_3:67029799-67029818 Msa0466410:intron 25.0%
! CTGTTAGATTTAAACAAACT+TGG - chr3_3:67029921-67029940 Msa0466410:CDS 25.0%
! TTAGATTTAAACAAACTTGG+TGG - chr3_3:67029924-67029943 Msa0466410:CDS 25.0%
! TAGATTTAAACAAACTTGGT+GGG - chr3_3:67029925-67029944 Msa0466410:CDS 25.0%
! GTTAGTATAATTATTCTCTG+AGG + chr3_3:67030144-67030163 None:intergenic 25.0%
! AAAATAAGTAGAGGATACTA+GGG + chr3_3:67030264-67030283 None:intergenic 25.0%
! AAGTATAGATATAAGAAAGC+AGG + chr3_3:67030308-67030327 None:intergenic 25.0%
! CTGATATAAATCTTAGTAAG+CGG - chr3_3:67030443-67030462 Msa0466410:intron 25.0%
!!! CAAGTATTGATATCAAACTT+CGG - chr3_3:67030824-67030843 Msa0466410:intron 25.0%
! GACATTTGAGAACAAAAATT+AGG - chr3_3:67031806-67031825 Msa0466410:CDS 25.0%
! CATTTGAGAACAAAAATTAG+GGG - chr3_3:67031808-67031827 Msa0466410:CDS 25.0%
!!! ATACCGTCTATTTTTCTATT+TGG - chr3_3:67031866-67031885 Msa0466410:five_prime_UTR 25.0%
! TCACCAAATAGAAAAATAGA+CGG + chr3_3:67031872-67031891 None:intergenic 25.0%
! GGAGTGCTTTACTTATTTAT+AGG - chr3_3:67027985-67028004 Msa0466410:three_prime_UTR 30.0%
AACAAAGATACAAGCAAGAA+GGG + chr3_3:67028056-67028075 None:intergenic 30.0%
AAACAAAGATACAAGCAAGA+AGG + chr3_3:67028057-67028076 None:intergenic 30.0%
!!! TTGCTTTTTGTGTATGGTTT+AGG - chr3_3:67028351-67028370 Msa0466410:CDS 30.0%
!!! GCTGATTCTTTTAACTTTTC+AGG + chr3_3:67028387-67028406 None:intergenic 30.0%
!!! GGTGTTTTAACAGGAAATAA+TGG - chr3_3:67028545-67028564 Msa0466410:intron 30.0%
TTACCATTTGCATTATCCAA+TGG + chr3_3:67028693-67028712 None:intergenic 30.0%
!!! TTTTGTTTTAATACTCCCTC+CGG - chr3_3:67028793-67028812 Msa0466410:intron 30.0%
GTAAATTGTCTCCTGTAAAT+AGG - chr3_3:67028922-67028941 Msa0466410:intron 30.0%
TCAGCTAACATATATCAAAG+AGG + chr3_3:67029426-67029445 None:intergenic 30.0%
!!! TTTTGTTTTAAGGTGCGTTT+GGG + chr3_3:67029664-67029683 None:intergenic 30.0%
!!! TCTTGCTCTGTTTTGTTTTA+AGG + chr3_3:67029674-67029693 None:intergenic 30.0%
TTATGCATGCACTATTAAAC+AGG + chr3_3:67029885-67029904 None:intergenic 30.0%
! GGTGTTACATTCATGATTTA+TGG - chr3_3:67030060-67030079 Msa0466410:intron 30.0%
AAATAAGTAGAGGATACTAG+GGG + chr3_3:67030263-67030282 None:intergenic 30.0%
GAAAATAAGTAGAGGATACT+AGG + chr3_3:67030265-67030284 None:intergenic 30.0%
TAGATATAAGAAAGCAGGTT+GGG + chr3_3:67030303-67030322 None:intergenic 30.0%
ATAGATATAAGAAAGCAGGT+TGG + chr3_3:67030304-67030323 None:intergenic 30.0%
TTATATCAGAATAAGCGCAT+AGG + chr3_3:67030432-67030451 None:intergenic 30.0%
!!! AAGCGGTTGTTTTTTAACAA+AGG - chr3_3:67030460-67030479 Msa0466410:intron 30.0%
!! ACTCTCAAGGTTGATAATTA+TGG - chr3_3:67030561-67030580 Msa0466410:intron 30.0%
TAAATCAGTCAATAGAAGCA+CGG + chr3_3:67030857-67030876 None:intergenic 30.0%
AGATCCTGGTTATTGAAAAA+TGG + chr3_3:67030919-67030938 None:intergenic 30.0%
ACATTAGAAGAACAATCTCA+TGG + chr3_3:67031132-67031151 None:intergenic 30.0%
GGATTGAATTACAGAAATGA+GGG + chr3_3:67031199-67031218 None:intergenic 30.0%
TGGATTGAATTACAGAAATG+AGG + chr3_3:67031200-67031219 None:intergenic 30.0%
CACAAATTCAACAAGTCATA+GGG + chr3_3:67031243-67031262 None:intergenic 30.0%
ACACAAATTCAACAAGTCAT+AGG + chr3_3:67031244-67031263 None:intergenic 30.0%
CTTGTTGAATTTGTGTGAAA+TGG - chr3_3:67031248-67031267 Msa0466410:CDS 30.0%
TGAAATGGTAAATGTACTTG+TGG - chr3_3:67031263-67031282 Msa0466410:CDS 30.0%
ACTTCTTGGATGTATTAAAC+AGG - chr3_3:67031472-67031491 Msa0466410:CDS 30.0%
ACAATTGTTGCATGATTTGA+TGG - chr3_3:67031592-67031611 Msa0466410:intron 30.0%
AAACATTTACCATAGAAAGC+TGG - chr3_3:67031673-67031692 Msa0466410:CDS 30.0%
CAAATCTAGATGATGATACA+GGG + chr3_3:67031750-67031769 None:intergenic 30.0%
TCAAATCTAGATGATGATAC+AGG + chr3_3:67031751-67031770 None:intergenic 30.0%
CTTATTTATAGGAGTTGGCA+TGG - chr3_3:67027996-67028015 Msa0466410:three_prime_UTR 35.0%
!! AGTTGATAATAATGGCTGAC+GGG + chr3_3:67028170-67028189 None:intergenic 35.0%
!! CAGTTGATAATAATGGCTGA+CGG + chr3_3:67028171-67028190 None:intergenic 35.0%
!!! TGTGATTGTGGTGTTTTAAC+AGG - chr3_3:67028536-67028555 Msa0466410:intron 35.0%
GAATAATGCGTCTACTTCTT+TGG - chr3_3:67028623-67028642 Msa0466410:intron 35.0%
! AGATAGATACAGAGCTTTGT+TGG - chr3_3:67028647-67028666 Msa0466410:intron 35.0%
CTTTCTCTTGTAAATGAGAC+CGG + chr3_3:67028815-67028834 None:intergenic 35.0%
!! CTTTTAAGAAATACTCCCTC+CGG + chr3_3:67028949-67028968 None:intergenic 35.0%
TGTTTATAAATGTGACCGGA+GGG + chr3_3:67029028-67029047 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + chr3_3:67029029-67029048 None:intergenic 35.0%
GAAAACTATCATACTCACTC+CGG + chr3_3:67029187-67029206 None:intergenic 35.0%
! GAGTGAGTATGATAGTTTTC+AGG - chr3_3:67029187-67029206 Msa0466410:intron 35.0%
TCTTGCCTAAGTAGTTTGAT+CGG + chr3_3:67029250-67029269 None:intergenic 35.0%
!!! CTTTTAAGGCTATGTTTGGA+TGG - chr3_3:67029475-67029494 Msa0466410:intron 35.0%
!!! GTTTTGTTTTAAGGTGCGTT+TGG + chr3_3:67029665-67029684 None:intergenic 35.0%
AAAACAAAACAGAGCAAGAG+TGG - chr3_3:67029675-67029694 Msa0466410:intron 35.0%
ACTGTAATACAACTGAGAGA+AGG + chr3_3:67029719-67029738 None:intergenic 35.0%
GAACTTAATCACCATGATTC+TGG - chr3_3:67029966-67029985 Msa0466410:CDS 35.0%
TTGCTCTAATACCAGAATCA+TGG + chr3_3:67029980-67029999 None:intergenic 35.0%
AGAATTGCAATGGATGCAAA+AGG - chr3_3:67030201-67030220 Msa0466410:intron 35.0%
CAATGCAGGAAAATAAGTAG+AGG + chr3_3:67030273-67030292 None:intergenic 35.0%
AATGAAACAGTTTGCATGAG+AGG + chr3_3:67030401-67030420 None:intergenic 35.0%
TGCCAAATTTCAACTATTCC+AGG - chr3_3:67030522-67030541 Msa0466410:intron 35.0%
GACCTGGAATAGTTGAAATT+TGG + chr3_3:67030527-67030546 None:intergenic 35.0%
ATTTCAACTATTCCAGGTCT+TGG - chr3_3:67030528-67030547 Msa0466410:intron 35.0%
! AAATCTGGTTCCATAGAAGA+AGG - chr3_3:67030586-67030605 Msa0466410:intron 35.0%
TGCTTTAATGCCTTCTTCTA+TGG + chr3_3:67030599-67030618 None:intergenic 35.0%
! GTATTGATATCAAACTTCGG+AGG - chr3_3:67030827-67030846 Msa0466410:intron 35.0%
!! ACCACCATTTTTCAATAACC+AGG - chr3_3:67030912-67030931 Msa0466410:intron 35.0%
TCCTGGTTATTGAAAAATGG+TGG + chr3_3:67030916-67030935 None:intergenic 35.0%
! TTCTAATAGTCACCTTTTCC+TGG + chr3_3:67030987-67031006 None:intergenic 35.0%
ACATTTGCATCACACAGATA+AGG + chr3_3:67031057-67031076 None:intergenic 35.0%
GAAGAACAATCTCATGGAAA+AGG + chr3_3:67031126-67031145 None:intergenic 35.0%
!! ACGTTGAGATTTTGAGAACA+TGG + chr3_3:67031220-67031239 None:intergenic 35.0%
! AAGGAGTATGATCAGTAGAA+TGG - chr3_3:67031325-67031344 Msa0466410:CDS 35.0%
TGCACAAAAAGAACTACAGA+AGG + chr3_3:67031408-67031427 None:intergenic 35.0%
CTCAACATGAAACACAAAAG+GGG + chr3_3:67031441-67031460 None:intergenic 35.0%
GCTCAACATGAAACACAAAA+GGG + chr3_3:67031442-67031461 None:intergenic 35.0%
AGCTCAACATGAAACACAAA+AGG + chr3_3:67031443-67031462 None:intergenic 35.0%
! TGTGTTTCATGTTGAGCTTT+TGG - chr3_3:67031445-67031464 Msa0466410:intron 35.0%
TTAAGAGTCTCTTGCAACTA+AGG - chr3_3:67031507-67031526 Msa0466410:CDS 35.0%
! CACTAAAGCTCGAGTTTTTA+GGG - chr3_3:67031532-67031551 Msa0466410:CDS 35.0%
TTTAGGGACTTATGTGCTTT+AGG - chr3_3:67031548-67031567 Msa0466410:intron 35.0%
ATTGTTGCATGATTTGATGG+CGG - chr3_3:67031595-67031614 Msa0466410:intron 35.0%
GGAAAATGTTCGTATTGAAG+TGG - chr3_3:67031649-67031668 Msa0466410:CDS 35.0%
GAGTTGACATCCTTAGATTA+TGG - chr3_3:67031718-67031737 Msa0466410:CDS 35.0%
CAGCATCAAAATTGTGAGAA+AGG + chr3_3:67031781-67031800 None:intergenic 35.0%
AGTGAGGTTGTTGTCTGTTT+CGG + chr3_3:67028146-67028165 None:intergenic 40.0%
!! TCGACGGCAGTTGATAATAA+TGG + chr3_3:67028178-67028197 None:intergenic 40.0%
TGCAACATGCTATCCATTGA+AGG + chr3_3:67028256-67028275 None:intergenic 40.0%
AATGGATAGCATGTTGCACT+GGG - chr3_3:67028258-67028277 Msa0466410:CDS 40.0%
!!! TGACGCTTTTGAAGTTCAGT+CGG + chr3_3:67028432-67028451 None:intergenic 40.0%
GAGCCATTGGATAATGCAAA+TGG - chr3_3:67028687-67028706 Msa0466410:intron 40.0%
TTGTCTCCTGTAAATAGGAC+CGG - chr3_3:67028927-67028946 Msa0466410:intron 40.0%
TGGTTATGAATTACTCCCTC+CGG - chr3_3:67029010-67029029 Msa0466410:CDS 40.0%
!! TAGTTTTCAGGATCGTACCT+AGG - chr3_3:67029199-67029218 Msa0466410:intron 40.0%
TAGTTTGATCGGTGAGCTAA+GGG + chr3_3:67029239-67029258 None:intergenic 40.0%
TTAAGGCTATGTTTGGATGG+AGG - chr3_3:67029478-67029497 Msa0466410:intron 40.0%
TAAGGCTATGTTTGGATGGA+GGG - chr3_3:67029479-67029498 Msa0466410:intron 40.0%
!!! TTTGGATGGAGGGTTTTAGA+GGG - chr3_3:67029489-67029508 Msa0466410:intron 40.0%
TATTAGAGCAACTGCTGCAT+GGG - chr3_3:67029989-67030008 Msa0466410:intron 40.0%
! CAATCCAACTTTTCAGCAAC+AGG - chr3_3:67030034-67030053 Msa0466410:intron 40.0%
CATACCTGTTGCTGAAAAGT+TGG + chr3_3:67030041-67030060 None:intergenic 40.0%
! CAACTTTTCAGCAACAGGTA+TGG - chr3_3:67030039-67030058 Msa0466410:intron 40.0%
TTACCAGTGAGACAAGTACT+GGG + chr3_3:67030344-67030363 None:intergenic 40.0%
ATTACCAGTGAGACAAGTAC+TGG + chr3_3:67030345-67030364 None:intergenic 40.0%
TCGGAATAATTTAGCCAGTC+AGG - chr3_3:67030642-67030661 Msa0466410:intron 40.0%
AGCATAGAACAATTCCTGAC+TGG + chr3_3:67030659-67030678 None:intergenic 40.0%
GAATTGTTCTATGCTGAAGC+TGG - chr3_3:67030664-67030683 Msa0466410:intron 40.0%
TGATATCAAACTTCGGAGGA+AGG - chr3_3:67030831-67030850 Msa0466410:intron 40.0%
! TTTTTCTCGGTGAGAGTTGA+TGG + chr3_3:67031084-67031103 None:intergenic 40.0%
TGATCAGTAGAATGGAAGTG+AGG - chr3_3:67031333-67031352 Msa0466410:CDS 40.0%
GATCAGTAGAATGGAAGTGA+GGG - chr3_3:67031334-67031353 Msa0466410:CDS 40.0%
!!! GAGCTTTTGGTTTGACTTCT+TGG - chr3_3:67031458-67031477 Msa0466410:intron 40.0%
! CCTAAAAACTCGAGCTTTAG+TGG + chr3_3:67031534-67031553 None:intergenic 40.0%
! CCACTAAAGCTCGAGTTTTT+AGG - chr3_3:67031531-67031550 Msa0466410:CDS 40.0%
GGATCAGAGAGACTATGTAA+TGG - chr3_3:67031622-67031641 Msa0466410:intron 40.0%
!! GAGAGACTATGTAATGGATG+TGG - chr3_3:67031628-67031647 Msa0466410:intron 40.0%
!! ACTGCTTTTCCAGCTTTCTA+TGG + chr3_3:67031685-67031704 None:intergenic 40.0%
AGGGACAAGACCATAATCTA+AGG + chr3_3:67031731-67031750 None:intergenic 40.0%
ACTCGCTCTCATACTCTTCA+CGG - chr3_3:67028108-67028127 Msa0466410:three_prime_UTR 45.0%
GAGTAGATCGGATTCATCGA+CGG + chr3_3:67028194-67028213 None:intergenic 45.0%
CAATGGATAGCATGTTGCAC+TGG - chr3_3:67028257-67028276 Msa0466410:CDS 45.0%
!! TCTTGAGCTTGTTGAGCCAT+TGG - chr3_3:67028674-67028693 Msa0466410:intron 45.0%
CTCTTGTAAATGAGACCGGA+GGG + chr3_3:67028811-67028830 None:intergenic 45.0%
TCTCTTGTAAATGAGACCGG+AGG + chr3_3:67028812-67028831 None:intergenic 45.0%
GTAGTTTGATCGGTGAGCTA+AGG + chr3_3:67029240-67029259 None:intergenic 45.0%
GCTCACCGATCAAACTACTT+AGG - chr3_3:67029242-67029261 Msa0466410:CDS 45.0%
!! GTTTGGATGGAGGGTTTTAG+AGG - chr3_3:67029488-67029507 Msa0466410:intron 45.0%
!!! TTGGATGGAGGGTTTTAGAG+GGG - chr3_3:67029490-67029509 Msa0466410:intron 45.0%
AGAGTGGTAGATCCCAATGT+TGG - chr3_3:67029691-67029710 Msa0466410:intron 45.0%
!! TGAGAGAAGGCACCAACATT+GGG + chr3_3:67029706-67029725 None:intergenic 45.0%
GTATTAGAGCAACTGCTGCA+TGG - chr3_3:67029988-67030007 Msa0466410:intron 45.0%
ATTCTACAACAGCGCAACAC+TGG + chr3_3:67030186-67030205 None:intergenic 45.0%
GCGCTGTTGTAGAATTGCAA+TGG - chr3_3:67030191-67030210 Msa0466410:intron 45.0%
TTTGCATGAGAGGCAGTTGA+GGG + chr3_3:67030391-67030410 None:intergenic 45.0%
CTATTCCAGGTCTTGGAACT+CGG - chr3_3:67030535-67030554 Msa0466410:intron 45.0%
! ACGCTGTTTCAGCTTTGACT+CGG - chr3_3:67030623-67030642 Msa0466410:intron 45.0%
TTGTTCTATGCTGAAGCTGG+AGG - chr3_3:67030667-67030686 Msa0466410:intron 45.0%
CCACAGACTTTAACAGATCC+TGG + chr3_3:67030933-67030952 None:intergenic 45.0%
CCAGGATCTGTTAAAGTCTG+TGG - chr3_3:67030930-67030949 Msa0466410:intron 45.0%
! CTTTTCCTGGAGATCAAGGT+CGG + chr3_3:67030974-67030993 None:intergenic 45.0%
! TCACCTTTTCCTGGAGATCA+AGG + chr3_3:67030978-67030997 None:intergenic 45.0%
GTAGAATGGAAGTGAGGGAT+TGG - chr3_3:67031339-67031358 Msa0466410:CDS 45.0%
GTTGTTGTCTGTTTCGGCGA+CGG + chr3_3:67028140-67028159 None:intergenic 50.0%
ATAATGGCTGACGGGAAGTG+AGG + chr3_3:67028162-67028181 None:intergenic 50.0%
CATTGAAGGAAACCCGCCAT+CGG + chr3_3:67028242-67028261 None:intergenic 50.0%
TCTCCTGTAAATAGGACCGG+AGG - chr3_3:67028930-67028949 Msa0466410:intron 50.0%
CTCCTGTAAATAGGACCGGA+GGG - chr3_3:67028931-67028950 Msa0466410:intron 50.0%
ATCGTACCTAGGACCTCCTT+CGG - chr3_3:67029210-67029229 Msa0466410:intron 50.0%
!! CTGAGAGAAGGCACCAACAT+TGG + chr3_3:67029707-67029726 None:intergenic 50.0%
!! CAAACTTGGTGGGCTTCATG+CGG - chr3_3:67029935-67029954 Msa0466410:CDS 50.0%
GGTTGGGAGAAGATCAATGC+AGG + chr3_3:67030287-67030306 None:intergenic 50.0%
GATCCCAGTACTTGTCTCAC+TGG - chr3_3:67030338-67030357 Msa0466410:intron 50.0%
TTGCATGAGAGGCAGTTGAG+GGG + chr3_3:67030390-67030409 None:intergenic 50.0%
GTTTGCATGAGAGGCAGTTG+AGG + chr3_3:67030392-67030411 None:intergenic 50.0%
!! TGGAACTCGGTGTACTCTCA+AGG - chr3_3:67030548-67030567 Msa0466410:intron 50.0%
AGCTGGAGGTTTGATGCTTC+AGG - chr3_3:67030681-67030700 Msa0466410:intron 50.0%
TTCAACCGACCTTGATCTCC+AGG - chr3_3:67030966-67030985 Msa0466410:intron 50.0%
CGACCTTGATCTCCAGGAAA+AGG - chr3_3:67030972-67030991 Msa0466410:intron 50.0%
!! GCATGATTTGATGGCGGATG+AGG - chr3_3:67031601-67031620 Msa0466410:intron 50.0%
AGGAGTTGGCATGGAAGCTG+AGG - chr3_3:67028005-67028024 Msa0466410:three_prime_UTR 55.0%
CGCTCTCATACTCTTCACGG+CGG - chr3_3:67028111-67028130 Msa0466410:three_prime_UTR 55.0%
TGAATCCGATCTACTCCCGC+CGG - chr3_3:67028198-67028217 Msa0466410:three_prime_UTR 55.0%
!! CGATGGCGGGTTTCCTTCAA+TGG - chr3_3:67028240-67028259 Msa0466410:CDS 55.0%
CTCCCTCCGGTCCTATTTAC+AGG + chr3_3:67028936-67028955 None:intergenic 55.0%
!!! GATGGAGGGTTTTAGAGGGG+AGG - chr3_3:67029493-67029512 Msa0466410:intron 55.0%
GCAACTGCTGCATGGGTTCT+TGG - chr3_3:67029996-67030015 Msa0466410:intron 55.0%
! GGATACTAGGGGAGAGTGCA+GGG + chr3_3:67030252-67030271 None:intergenic 55.0%
! AGGATACTAGGGGAGAGTGC+AGG + chr3_3:67030253-67030272 None:intergenic 55.0%
GTACACCGAGTTCCAAGACC+TGG + chr3_3:67030543-67030562 None:intergenic 55.0%
GAGTCGGAAAGAGCGGCATC+CGG + chr3_3:67028220-67028239 None:intergenic 60.0%
GCCATCGGAGTCGGAAAGAG+CGG + chr3_3:67028227-67028246 None:intergenic 60.0%
GCTCTTTCCGACTCCGATGG+CGG - chr3_3:67028226-67028245 Msa0466410:CDS 60.0%
CTCTTTCCGACTCCGATGGC+GGG - chr3_3:67028227-67028246 Msa0466410:CDS 60.0%
AGGAAACCCGCCATCGGAGT+CGG + chr3_3:67028236-67028255 None:intergenic 60.0%
GAGCTAAGGGACACCGAAGG+AGG + chr3_3:67029226-67029245 None:intergenic 60.0%
GGTGAGCTAAGGGACACCGA+AGG + chr3_3:67029229-67029248 None:intergenic 60.0%
GGCATCCGGCGGGAGTAGAT+CGG + chr3_3:67028206-67028225 None:intergenic 65.0%
TCGGAAAGAGCGGCATCCGG+CGG + chr3_3:67028217-67028236 None:intergenic 65.0%
GCCGCTCTTTCCGACTCCGA+TGG - chr3_3:67028223-67028242 Msa0466410:CDS 65.0%
GGGACACCGAAGGAGGTCCT+AGG + chr3_3:67029219-67029238 None:intergenic 65.0%
CGGAAAGAGCGGCATCCGGC+GGG + chr3_3:67028216-67028235 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 67027983 67031942 67027983 ID=Msa0466410;Name=Msa0466410
chr3_3 mRNA 67027983 67031942 67027983 ID=Msa0466410-mRNA-1;Parent=Msa0466410;Name=Msa0466410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=105|1|1|1|1|1|7|236|375
chr3_3 exon 67027983 67028431 67027983 ID=Msa0466410-mRNA-1:exon:15413;Parent=Msa0466410-mRNA-1
chr3_3 exon 67028932 67029117 67028932 ID=Msa0466410-mRNA-1:exon:15412;Parent=Msa0466410-mRNA-1
chr3_3 exon 67029223 67029381 67029223 ID=Msa0466410-mRNA-1:exon:15411;Parent=Msa0466410-mRNA-1
chr3_3 exon 67029870 67029997 67029870 ID=Msa0466410-mRNA-1:exon:15410;Parent=Msa0466410-mRNA-1
chr3_3 exon 67031217 67031367 67031217 ID=Msa0466410-mRNA-1:exon:15409;Parent=Msa0466410-mRNA-1
chr3_3 exon 67031461 67031552 67031461 ID=Msa0466410-mRNA-1:exon:15408;Parent=Msa0466410-mRNA-1
chr3_3 exon 67031639 67031942 67031639 ID=Msa0466410-mRNA-1:exon:15407;Parent=Msa0466410-mRNA-1
chr3_3 five_prime_UTR 67031838 67031942 67031838 ID=Msa0466410-mRNA-1:five_prime_utr;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67031639 67031837 67031639 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67031461 67031552 67031461 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67031217 67031367 67031217 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67029870 67029997 67029870 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67029223 67029381 67029223 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67028932 67029117 67028932 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 CDS 67028219 67028431 67028219 ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1
chr3_3 three_prime_UTR 67027983 67028218 67027983 ID=Msa0466410-mRNA-1:three_prime_utr;Parent=Msa0466410-mRNA-1
Gene Sequence

>Msa0466410

ATGGAGCGAATTACACTCTTACTCGCTCTCATACTCTTCACGGCGGCTGCCGTCGCCGAAACAGACAACAACCTCACTTCCCGTCAGCCATTATTATCAACTGCCGTCGATGAATCCGATCTACTCCCGCCGGATGCCGCTCTTTCCGACTCCGATGGCGGGTTTCCTTCAATGGATAGCATGTTGCACTGGGCAATAAGTCATTCTGATCCTGAAAAGTTAAAAGAATCAGCACAATCTCATCAAACATTATCACCGACTGAACTTCAAAAGCGTCAATTAGAAATCAAAGAAATAATGGAGAAAACAAGAATGTTATCCGATGCTGAATTGATGAAAATTTCTATAAAAGACTTGAATAATGCGTCTACTTCTTTGGAAGATAGATACAGAGCTTTGTTGGAGCTTCTTGAGCTTGTTGAGCCATTGGATAATGCAAATGATTTAAACAAACTTGGTGGGCTTCATGCGGTCACACAAGAACTTAATCACCATGATTCTGGTATTAGAGCAACTGCTGCATGGGTTCTTGGAAAAGCTAGTCAGAACAATCCAACTTTTCAGCAACAGGTCTTGGAACTCGGTGTACTCTCAAGGTTGATAATTATGGTAAAATCTGGTTCCATAGAAGAAGGCATTAAAGCATTGTACGCTGTTTCAGCTTTGACTCGGAATAATTTAGCCAGTCAGGAATTGTTCTATGCTGAAGCTGGAGGTTTGATGCTTCAGGATATTTTGAGGAATGCAAGTATTGATATCAAACTTCGGAGGAAGGCCGTGCTTCTATTGACTGATTTAGCAGATTATCAATTAGAAAACGTTGATAAAGATGAACCACCATTTTTCAATAACCAGGATCTGTTAAAGTCTGTGGTTGATTTAACTGCTTCAACCGACCTTGATCTCCAGGAAAAGGCACTTGTCGCGATTAAGAGTCTCTTGCAACTAAGGACCACTAAAGCTCGAGTTTTTAGGGACTTATGTGCTTTAGGTGATGCACTGAATAGAACGAAACAATTGTTGCATGATTTGATGGCGGATGAGGATCAGAGAGACTATGTAATGGATGTGGAAAATGTTCGTATTGAAGTGGAAAACATTTACCATAGAAAGCTGGAAAAGCAGTGA

Protein sequence

>Msa0466410

MERITLLLALILFTAAAVAETDNNLTSRQPLLSTAVDESDLLPPDAALSDSDGGFPSMDSMLHWAISHSDPEKLKESAQSHQTLSPTELQKRQLEIKEIMEKTRMLSDAELMKISIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELNHHDSGIRATAAWVLGKASQNNPTFQQQVLELGVLSRLIIMVKSGSIEEGIKALYAVSALTRNNLASQELFYAEAGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVDKDEPPFFNNQDLLKSVVDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKQLLHDLMADEDQRDYVMDVENVRIEVENIYHRKLEKQ*