Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0466410 | XP_003601379.1 | 93.931 | 379 | 18 | 2 | 1 | 375 | 1 | 378 | 0.0 | 678 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0466410 | sp|Q4WDH3|FES1_ASPFU | 30.168 | 179 | 121 | 3 | 56 | 233 | 3 | 178 | 2.29e-16 | 80.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0466410 | G7J6P8 | 93.931 | 379 | 18 | 2 | 1 | 375 | 1 | 378 | 0.0 | 678 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0047110 | Msa0466410 | 0.811909 | 5.530584e-51 | -8.615850e-47 |
Msa0236510 | Msa0466410 | -0.800207 | 1.605796e-48 | -8.615850e-47 |
Msa0417330 | Msa0466410 | 0.808472 | 3.045967e-50 | -8.615850e-47 |
Msa0466400 | Msa0466410 | 0.870668 | 1.226640e-66 | -8.615850e-47 |
Msa0466410 | Msa1210110 | 0.808494 | 3.013611e-50 | -8.615850e-47 |
Msa0466410 | Msa1362400 | 0.802709 | 4.933452e-49 | -8.615850e-47 |
Msa0466410 | Msa1457160 | 0.818092 | 2.347630e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0466410 | MtrunA17_Chr3g0119271 | 93.931 | 379 | 18 | 2 | 1 | 375 | 1 | 378 | 0.0 | 678 |
Msa0466410 | MtrunA17_Chr4g0009731 | 31.522 | 276 | 155 | 10 | 56 | 320 | 6 | 258 | 4.90e-17 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0466410 | AT3G51980.1 | 55.348 | 374 | 161 | 2 | 3 | 372 | 8 | 379 | 9.86e-137 | 395 |
Msa0466410 | AT5G02150.1 | 29.470 | 302 | 176 | 11 | 56 | 347 | 6 | 280 | 1.92e-17 | 82.8 |
Msa0466410 | AT5G02150.3 | 29.470 | 302 | 176 | 11 | 56 | 347 | 6 | 280 | 1.92e-17 | 82.8 |
Msa0466410 | AT3G09350.1 | 29.213 | 267 | 172 | 7 | 56 | 320 | 6 | 257 | 2.08e-15 | 77.4 |
Msa0466410 | AT3G53800.1 | 27.922 | 308 | 165 | 8 | 56 | 329 | 6 | 290 | 6.46e-15 | 75.9 |
Msa0466410 | AT3G53800.2 | 30.120 | 249 | 145 | 6 | 103 | 329 | 10 | 251 | 3.41e-14 | 73.2 |
Msa0466410 | AT5G02150.2 | 33.645 | 214 | 123 | 8 | 135 | 343 | 42 | 241 | 5.16e-14 | 72.4 |
Msa0466410 | AT3G09350.4 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.01e-12 | 68.9 |
Msa0466410 | AT3G09350.3 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.01e-12 | 68.9 |
Msa0466410 | AT3G09350.2 | 34.359 | 195 | 117 | 5 | 127 | 320 | 37 | 221 | 1.01e-12 | 68.9 |
Find 79 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTTTAATGCCTTCTTCTA+TGG | 0.201154 | 3_3:+67029307 | None:intergenic |
TTTAGGGACTTATGTGCTTT+AGG | 0.269168 | 3_3:-67028355 | Msa0466410:CDS |
GAATAATGCGTCTACTTCTT+TGG | 0.270695 | 3_3:-67031280 | Msa0466410:CDS |
ACTCTCAAGGTTGATAATTA+TGG | 0.284619 | 3_3:-67029342 | Msa0466410:CDS |
GGAGTGCTTTACTTATTTAT+AGG | 0.286333 | 3_3:-67031918 | Msa0466410:five_prime_UTR |
GCAACTGCTGCATGGGTTCT+TGG | 0.322183 | 3_3:-67029907 | Msa0466410:CDS |
AGCTGGAGGTTTGATGCTTC+AGG | 0.334540 | 3_3:-67029222 | Msa0466410:intron |
GAACTTAATCACCATGATTC+TGG | 0.337700 | 3_3:-67029937 | Msa0466410:CDS |
AGTGAGGTTGTTGTCTGTTT+CGG | 0.341684 | 3_3:+67031760 | None:intergenic |
GAGTTGACATCCTTAGATTA+TGG | 0.356023 | 3_3:-67028185 | Msa0466410:three_prime_UTR |
CGATGGCGGGTTTCCTTCAA+TGG | 0.363526 | 3_3:-67031663 | Msa0466410:CDS |
TTGATAATTATGGTAAAATC+TGG | 0.364174 | 3_3:-67029332 | Msa0466410:CDS |
CTGTTAGATTTAAACAAACT+TGG | 0.368128 | 3_3:-67029982 | Msa0466410:intron |
ACAATTGTTGCATGATTTGA+TGG | 0.390675 | 3_3:-67028311 | Msa0466410:CDS |
CTCTTTCCGACTCCGATGGC+GGG | 0.393050 | 3_3:-67031676 | Msa0466410:CDS |
TCGACGGCAGTTGATAATAA+TGG | 0.404340 | 3_3:+67031728 | None:intergenic |
TCAAATCTAGATGATGATAC+AGG | 0.412030 | 3_3:+67028155 | None:intergenic |
AGATAGATACAGAGCTTTGT+TGG | 0.429529 | 3_3:-67031256 | Msa0466410:CDS |
AGGGACAAGACCATAATCTA+AGG | 0.431080 | 3_3:+67028175 | None:intergenic |
CTTTACTTATTTATAGGAGT+TGG | 0.437798 | 3_3:-67031912 | Msa0466410:five_prime_UTR |
CATACCTGTTGCTGAAAAGT+TGG | 0.441542 | 3_3:+67029865 | None:intergenic |
CAGCATCAAAATTGTGAGAA+AGG | 0.443624 | 3_3:+67028125 | None:intergenic |
TTAAGAGTCTCTTGCAACTA+AGG | 0.444194 | 3_3:-67028396 | Msa0466410:CDS |
TCTTGAGCTTGTTGAGCCAT+TGG | 0.448659 | 3_3:-67031229 | Msa0466410:CDS |
TCGGAATAATTTAGCCAGTC+AGG | 0.451248 | 3_3:-67029261 | Msa0466410:CDS |
CAATGGATAGCATGTTGCAC+TGG | 0.464205 | 3_3:-67031646 | Msa0466410:CDS |
CCACAGACTTTAACAGATCC+TGG | 0.468287 | 3_3:+67028973 | None:intergenic |
TTCAACCGACCTTGATCTCC+AGG | 0.485779 | 3_3:-67028937 | Msa0466410:CDS |
TGCAACATGCTATCCATTGA+AGG | 0.490686 | 3_3:+67031650 | None:intergenic |
CGACCTTGATCTCCAGGAAA+AGG | 0.496260 | 3_3:-67028931 | Msa0466410:intron |
TTAGATTTAAACAAACTTGG+TGG | 0.500809 | 3_3:-67029979 | Msa0466410:intron |
GTTGTTGTCTGTTTCGGCGA+CGG | 0.505085 | 3_3:+67031766 | None:intergenic |
GCATGATTTGATGGCGGATG+AGG | 0.511123 | 3_3:-67028302 | Msa0466410:CDS |
AACAAAGATACAAGCAAGAA+GGG | 0.512016 | 3_3:+67031850 | None:intergenic |
CTTATTTATAGGAGTTGGCA+TGG | 0.513444 | 3_3:-67031907 | Msa0466410:five_prime_UTR |
TAGATTTAAACAAACTTGGT+GGG | 0.516287 | 3_3:-67029978 | Msa0466410:CDS |
GAGTCGGAAAGAGCGGCATC+CGG | 0.516582 | 3_3:+67031686 | None:intergenic |
GCCGCTCTTTCCGACTCCGA+TGG | 0.518427 | 3_3:-67031680 | Msa0466410:CDS |
CTATTCCAGGTCTTGGAACT+CGG | 0.522629 | 3_3:-67029368 | Msa0466410:intron |
AAACAAAGATACAAGCAAGA+AGG | 0.524186 | 3_3:+67031849 | None:intergenic |
ACTCGCTCTCATACTCTTCA+CGG | 0.526349 | 3_3:-67031795 | Msa0466410:CDS |
TTACCATTTGCATTATCCAA+TGG | 0.528194 | 3_3:+67031213 | None:intergenic |
GCTCTTTCCGACTCCGATGG+CGG | 0.529221 | 3_3:-67031677 | Msa0466410:CDS |
GAATTGTTCTATGCTGAAGC+TGG | 0.531227 | 3_3:-67029239 | Msa0466410:CDS |
ACGCTGTTTCAGCTTTGACT+CGG | 0.535198 | 3_3:-67029280 | Msa0466410:CDS |
TATTAGAGCAACTGCTGCAT+GGG | 0.537407 | 3_3:-67029914 | Msa0466410:CDS |
AAACATTTACCATAGAAAGC+TGG | 0.539602 | 3_3:-67028230 | Msa0466410:CDS |
AAATCTGGTTCCATAGAAGA+AGG | 0.545793 | 3_3:-67029317 | Msa0466410:CDS |
CGGAAAGAGCGGCATCCGGC+GGG | 0.546815 | 3_3:+67031690 | None:intergenic |
GAGAGACTATGTAATGGATG+TGG | 0.547171 | 3_3:-67028275 | Msa0466410:CDS |
GTATTAGAGCAACTGCTGCA+TGG | 0.549978 | 3_3:-67029915 | Msa0466410:CDS |
TTGCTCTAATACCAGAATCA+TGG | 0.552550 | 3_3:+67029926 | None:intergenic |
GGCATCCGGCGGGAGTAGAT+CGG | 0.560168 | 3_3:+67031700 | None:intergenic |
TGATATCAAACTTCGGAGGA+AGG | 0.564399 | 3_3:-67029072 | Msa0466410:CDS |
AGCATAGAACAATTCCTGAC+TGG | 0.564526 | 3_3:+67029247 | None:intergenic |
GAGCCATTGGATAATGCAAA+TGG | 0.568060 | 3_3:-67031216 | Msa0466410:intron |
GGATCAGAGAGACTATGTAA+TGG | 0.571622 | 3_3:-67028281 | Msa0466410:CDS |
TGGAACTCGGTGTACTCTCA+AGG | 0.571684 | 3_3:-67029355 | Msa0466410:CDS |
AGGAAACCCGCCATCGGAGT+CGG | 0.575203 | 3_3:+67031670 | None:intergenic |
AGTTGATAATAATGGCTGAC+GGG | 0.581532 | 3_3:+67031736 | None:intergenic |
CCAGGATCTGTTAAAGTCTG+TGG | 0.581747 | 3_3:-67028973 | Msa0466410:CDS |
AATGGATAGCATGTTGCACT+GGG | 0.584422 | 3_3:-67031645 | Msa0466410:CDS |
TTGTTCTATGCTGAAGCTGG+AGG | 0.589290 | 3_3:-67029236 | Msa0466410:CDS |
TCGGAAAGAGCGGCATCCGG+CGG | 0.589412 | 3_3:+67031689 | None:intergenic |
GGAAAATGTTCGTATTGAAG+TGG | 0.592134 | 3_3:-67028254 | Msa0466410:CDS |
AGGAGTTGGCATGGAAGCTG+AGG | 0.593753 | 3_3:-67031898 | Msa0466410:five_prime_UTR |
CAAGTATTGATATCAAACTT+CGG | 0.604972 | 3_3:-67029079 | Msa0466410:CDS |
GCCATCGGAGTCGGAAAGAG+CGG | 0.605513 | 3_3:+67031679 | None:intergenic |
CAGTTGATAATAATGGCTGA+CGG | 0.608320 | 3_3:+67031735 | None:intergenic |
CAAATCTAGATGATGATACA+GGG | 0.614135 | 3_3:+67028156 | None:intergenic |
ATAATGGCTGACGGGAAGTG+AGG | 0.642518 | 3_3:+67031744 | None:intergenic |
TAAATCAGTCAATAGAAGCA+CGG | 0.644107 | 3_3:+67029049 | None:intergenic |
GAGTAGATCGGATTCATCGA+CGG | 0.645125 | 3_3:+67031712 | None:intergenic |
CATTGAAGGAAACCCGCCAT+CGG | 0.646434 | 3_3:+67031664 | None:intergenic |
TGAATCCGATCTACTCCCGC+CGG | 0.648772 | 3_3:-67031705 | Msa0466410:CDS |
CAAACTTGGTGGGCTTCATG+CGG | 0.669848 | 3_3:-67029968 | Msa0466410:CDS |
ATTGTTGCATGATTTGATGG+CGG | 0.681664 | 3_3:-67028308 | Msa0466410:CDS |
GTATTGATATCAAACTTCGG+AGG | 0.727448 | 3_3:-67029076 | Msa0466410:CDS |
CGCTCTCATACTCTTCACGG+CGG | 0.754940 | 3_3:-67031792 | Msa0466410:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAATTTATGTACTATT+TGG | + | chr3_3:67028889-67028908 | None:intergenic | 10.0% |
!!! | CTTTGTTTTCTATAATTAAA+TGG | - | chr3_3:67028069-67028088 | Msa0466410:three_prime_UTR | 15.0% |
!! | TGTATAGTTATTAATTATCA+CGG | - | chr3_3:67028290-67028309 | Msa0466410:CDS | 15.0% |
!! | TTTATTTATTTATGTGATTG+TGG | - | chr3_3:67028524-67028543 | Msa0466410:intron | 15.0% |
!!! | TAAACAAAAATGTACTTTTT+AGG | - | chr3_3:67029042-67029061 | Msa0466410:CDS | 15.0% |
!! | GATAATATTAAAACTTAGAT+AGG | + | chr3_3:67030710-67030729 | None:intergenic | 15.0% |
!!! | TATTGATACTTGAATTTTTT+AGG | - | chr3_3:67030786-67030805 | Msa0466410:intron | 15.0% |
!! | TTGATTTACTTTATTATCAA+AGG | - | chr3_3:67031306-67031325 | Msa0466410:CDS | 15.0% |
!!! | TACTATAATGTTTTTTCACT+TGG | - | chr3_3:67028742-67028761 | Msa0466410:intron | 20.0% |
!!! | ACTATAATGTTTTTTCACTT+GGG | - | chr3_3:67028743-67028762 | Msa0466410:intron | 20.0% |
!!! | ATTTATGTACTATTTGGTTT+AGG | + | chr3_3:67028883-67028902 | None:intergenic | 20.0% |
!!! | TTTTTGTTTATAAATGTGAC+CGG | + | chr3_3:67029032-67029051 | None:intergenic | 20.0% |
!! | CATTGAATACATAATGTATT+TGG | - | chr3_3:67029067-67029086 | Msa0466410:CDS | 20.0% |
!!! | TCTCAAAATCTGTTTTTTTT+AGG | - | chr3_3:67029340-67029359 | Msa0466410:CDS | 20.0% |
!! | TATGTATTCAAATATAGACT+TGG | - | chr3_3:67029636-67029655 | Msa0466410:intron | 20.0% |
!! | TGAATATTATGAACAAATGA+CGG | + | chr3_3:67029827-67029846 | None:intergenic | 20.0% |
!! | TTCAAATATCTCATAAGTAT+CGG | + | chr3_3:67030227-67030246 | None:intergenic | 20.0% |
!!! | TTGATAATTATGGTAAAATC+TGG | - | chr3_3:67030571-67030590 | Msa0466410:intron | 20.0% |
!!! | GAATTTTTTAGGATATTTTG+AGG | - | chr3_3:67030797-67030816 | Msa0466410:intron | 20.0% |
!!! | TCAAAATGTTTTGTTTTTCT+CGG | + | chr3_3:67031097-67031116 | None:intergenic | 20.0% |
!! | ACATTTGAGAACAAAAATTA+GGG | - | chr3_3:67031807-67031826 | Msa0466410:CDS | 20.0% |
! | CTTTACTTATTTATAGGAGT+TGG | - | chr3_3:67027991-67028010 | Msa0466410:three_prime_UTR | 25.0% |
! | ATAGTTATTAATTATCACGG+TGG | - | chr3_3:67028293-67028312 | Msa0466410:CDS | 25.0% |
!!! | TTGTTTTTGCTTTTTGTGTA+TGG | - | chr3_3:67028345-67028364 | Msa0466410:CDS | 25.0% |
!! | AATTTTCATCAATTCAGCAT+CGG | + | chr3_3:67028589-67028608 | None:intergenic | 25.0% |
!!! | GACTGTTTTTTTCTTTTTCT+AGG | - | chr3_3:67028968-67028987 | Msa0466410:CDS | 25.0% |
!!! | GCAAATTTTAGTAAAGTTAG+TGG | - | chr3_3:67028990-67029009 | Msa0466410:CDS | 25.0% |
! | CATTCAATGCTTAATGTATT+TGG | + | chr3_3:67029105-67029124 | None:intergenic | 25.0% |
!! | TTTTTGCTTATAAATGTGAC+CGG | - | chr3_3:67029165-67029184 | Msa0466410:intron | 25.0% |
!! | TCAGACCTTAAATACTTTTA+AGG | - | chr3_3:67029461-67029480 | Msa0466410:intron | 25.0% |
!!! | CATAGCCTTAAAAGTATTTA+AGG | + | chr3_3:67029469-67029488 | None:intergenic | 25.0% |
!!! | AATACTTTTAAGGCTATGTT+TGG | - | chr3_3:67029471-67029490 | Msa0466410:intron | 25.0% |
! | GTATATAAAGAACTTCACAT+GGG | + | chr3_3:67029791-67029810 | None:intergenic | 25.0% |
! | AGTATATAAAGAACTTCACA+TGG | + | chr3_3:67029792-67029811 | None:intergenic | 25.0% |
! | TTCTTTATATACTGTAGAAG+TGG | - | chr3_3:67029799-67029818 | Msa0466410:intron | 25.0% |
! | CTGTTAGATTTAAACAAACT+TGG | - | chr3_3:67029921-67029940 | Msa0466410:CDS | 25.0% |
! | TTAGATTTAAACAAACTTGG+TGG | - | chr3_3:67029924-67029943 | Msa0466410:CDS | 25.0% |
! | TAGATTTAAACAAACTTGGT+GGG | - | chr3_3:67029925-67029944 | Msa0466410:CDS | 25.0% |
! | GTTAGTATAATTATTCTCTG+AGG | + | chr3_3:67030144-67030163 | None:intergenic | 25.0% |
! | AAAATAAGTAGAGGATACTA+GGG | + | chr3_3:67030264-67030283 | None:intergenic | 25.0% |
! | AAGTATAGATATAAGAAAGC+AGG | + | chr3_3:67030308-67030327 | None:intergenic | 25.0% |
! | CTGATATAAATCTTAGTAAG+CGG | - | chr3_3:67030443-67030462 | Msa0466410:intron | 25.0% |
!!! | CAAGTATTGATATCAAACTT+CGG | - | chr3_3:67030824-67030843 | Msa0466410:intron | 25.0% |
! | GACATTTGAGAACAAAAATT+AGG | - | chr3_3:67031806-67031825 | Msa0466410:CDS | 25.0% |
! | CATTTGAGAACAAAAATTAG+GGG | - | chr3_3:67031808-67031827 | Msa0466410:CDS | 25.0% |
!!! | ATACCGTCTATTTTTCTATT+TGG | - | chr3_3:67031866-67031885 | Msa0466410:five_prime_UTR | 25.0% |
! | TCACCAAATAGAAAAATAGA+CGG | + | chr3_3:67031872-67031891 | None:intergenic | 25.0% |
! | GGAGTGCTTTACTTATTTAT+AGG | - | chr3_3:67027985-67028004 | Msa0466410:three_prime_UTR | 30.0% |
AACAAAGATACAAGCAAGAA+GGG | + | chr3_3:67028056-67028075 | None:intergenic | 30.0% | |
AAACAAAGATACAAGCAAGA+AGG | + | chr3_3:67028057-67028076 | None:intergenic | 30.0% | |
!!! | TTGCTTTTTGTGTATGGTTT+AGG | - | chr3_3:67028351-67028370 | Msa0466410:CDS | 30.0% |
!!! | GCTGATTCTTTTAACTTTTC+AGG | + | chr3_3:67028387-67028406 | None:intergenic | 30.0% |
!!! | GGTGTTTTAACAGGAAATAA+TGG | - | chr3_3:67028545-67028564 | Msa0466410:intron | 30.0% |
TTACCATTTGCATTATCCAA+TGG | + | chr3_3:67028693-67028712 | None:intergenic | 30.0% | |
!!! | TTTTGTTTTAATACTCCCTC+CGG | - | chr3_3:67028793-67028812 | Msa0466410:intron | 30.0% |
GTAAATTGTCTCCTGTAAAT+AGG | - | chr3_3:67028922-67028941 | Msa0466410:intron | 30.0% | |
TCAGCTAACATATATCAAAG+AGG | + | chr3_3:67029426-67029445 | None:intergenic | 30.0% | |
!!! | TTTTGTTTTAAGGTGCGTTT+GGG | + | chr3_3:67029664-67029683 | None:intergenic | 30.0% |
!!! | TCTTGCTCTGTTTTGTTTTA+AGG | + | chr3_3:67029674-67029693 | None:intergenic | 30.0% |
TTATGCATGCACTATTAAAC+AGG | + | chr3_3:67029885-67029904 | None:intergenic | 30.0% | |
! | GGTGTTACATTCATGATTTA+TGG | - | chr3_3:67030060-67030079 | Msa0466410:intron | 30.0% |
AAATAAGTAGAGGATACTAG+GGG | + | chr3_3:67030263-67030282 | None:intergenic | 30.0% | |
GAAAATAAGTAGAGGATACT+AGG | + | chr3_3:67030265-67030284 | None:intergenic | 30.0% | |
TAGATATAAGAAAGCAGGTT+GGG | + | chr3_3:67030303-67030322 | None:intergenic | 30.0% | |
ATAGATATAAGAAAGCAGGT+TGG | + | chr3_3:67030304-67030323 | None:intergenic | 30.0% | |
TTATATCAGAATAAGCGCAT+AGG | + | chr3_3:67030432-67030451 | None:intergenic | 30.0% | |
!!! | AAGCGGTTGTTTTTTAACAA+AGG | - | chr3_3:67030460-67030479 | Msa0466410:intron | 30.0% |
!! | ACTCTCAAGGTTGATAATTA+TGG | - | chr3_3:67030561-67030580 | Msa0466410:intron | 30.0% |
TAAATCAGTCAATAGAAGCA+CGG | + | chr3_3:67030857-67030876 | None:intergenic | 30.0% | |
AGATCCTGGTTATTGAAAAA+TGG | + | chr3_3:67030919-67030938 | None:intergenic | 30.0% | |
ACATTAGAAGAACAATCTCA+TGG | + | chr3_3:67031132-67031151 | None:intergenic | 30.0% | |
GGATTGAATTACAGAAATGA+GGG | + | chr3_3:67031199-67031218 | None:intergenic | 30.0% | |
TGGATTGAATTACAGAAATG+AGG | + | chr3_3:67031200-67031219 | None:intergenic | 30.0% | |
CACAAATTCAACAAGTCATA+GGG | + | chr3_3:67031243-67031262 | None:intergenic | 30.0% | |
ACACAAATTCAACAAGTCAT+AGG | + | chr3_3:67031244-67031263 | None:intergenic | 30.0% | |
CTTGTTGAATTTGTGTGAAA+TGG | - | chr3_3:67031248-67031267 | Msa0466410:CDS | 30.0% | |
TGAAATGGTAAATGTACTTG+TGG | - | chr3_3:67031263-67031282 | Msa0466410:CDS | 30.0% | |
ACTTCTTGGATGTATTAAAC+AGG | - | chr3_3:67031472-67031491 | Msa0466410:CDS | 30.0% | |
ACAATTGTTGCATGATTTGA+TGG | - | chr3_3:67031592-67031611 | Msa0466410:intron | 30.0% | |
AAACATTTACCATAGAAAGC+TGG | - | chr3_3:67031673-67031692 | Msa0466410:CDS | 30.0% | |
CAAATCTAGATGATGATACA+GGG | + | chr3_3:67031750-67031769 | None:intergenic | 30.0% | |
TCAAATCTAGATGATGATAC+AGG | + | chr3_3:67031751-67031770 | None:intergenic | 30.0% | |
CTTATTTATAGGAGTTGGCA+TGG | - | chr3_3:67027996-67028015 | Msa0466410:three_prime_UTR | 35.0% | |
!! | AGTTGATAATAATGGCTGAC+GGG | + | chr3_3:67028170-67028189 | None:intergenic | 35.0% |
!! | CAGTTGATAATAATGGCTGA+CGG | + | chr3_3:67028171-67028190 | None:intergenic | 35.0% |
!!! | TGTGATTGTGGTGTTTTAAC+AGG | - | chr3_3:67028536-67028555 | Msa0466410:intron | 35.0% |
GAATAATGCGTCTACTTCTT+TGG | - | chr3_3:67028623-67028642 | Msa0466410:intron | 35.0% | |
! | AGATAGATACAGAGCTTTGT+TGG | - | chr3_3:67028647-67028666 | Msa0466410:intron | 35.0% |
CTTTCTCTTGTAAATGAGAC+CGG | + | chr3_3:67028815-67028834 | None:intergenic | 35.0% | |
!! | CTTTTAAGAAATACTCCCTC+CGG | + | chr3_3:67028949-67028968 | None:intergenic | 35.0% |
TGTTTATAAATGTGACCGGA+GGG | + | chr3_3:67029028-67029047 | None:intergenic | 35.0% | |
TTGTTTATAAATGTGACCGG+AGG | + | chr3_3:67029029-67029048 | None:intergenic | 35.0% | |
GAAAACTATCATACTCACTC+CGG | + | chr3_3:67029187-67029206 | None:intergenic | 35.0% | |
! | GAGTGAGTATGATAGTTTTC+AGG | - | chr3_3:67029187-67029206 | Msa0466410:intron | 35.0% |
TCTTGCCTAAGTAGTTTGAT+CGG | + | chr3_3:67029250-67029269 | None:intergenic | 35.0% | |
!!! | CTTTTAAGGCTATGTTTGGA+TGG | - | chr3_3:67029475-67029494 | Msa0466410:intron | 35.0% |
!!! | GTTTTGTTTTAAGGTGCGTT+TGG | + | chr3_3:67029665-67029684 | None:intergenic | 35.0% |
AAAACAAAACAGAGCAAGAG+TGG | - | chr3_3:67029675-67029694 | Msa0466410:intron | 35.0% | |
ACTGTAATACAACTGAGAGA+AGG | + | chr3_3:67029719-67029738 | None:intergenic | 35.0% | |
GAACTTAATCACCATGATTC+TGG | - | chr3_3:67029966-67029985 | Msa0466410:CDS | 35.0% | |
TTGCTCTAATACCAGAATCA+TGG | + | chr3_3:67029980-67029999 | None:intergenic | 35.0% | |
AGAATTGCAATGGATGCAAA+AGG | - | chr3_3:67030201-67030220 | Msa0466410:intron | 35.0% | |
CAATGCAGGAAAATAAGTAG+AGG | + | chr3_3:67030273-67030292 | None:intergenic | 35.0% | |
AATGAAACAGTTTGCATGAG+AGG | + | chr3_3:67030401-67030420 | None:intergenic | 35.0% | |
TGCCAAATTTCAACTATTCC+AGG | - | chr3_3:67030522-67030541 | Msa0466410:intron | 35.0% | |
GACCTGGAATAGTTGAAATT+TGG | + | chr3_3:67030527-67030546 | None:intergenic | 35.0% | |
ATTTCAACTATTCCAGGTCT+TGG | - | chr3_3:67030528-67030547 | Msa0466410:intron | 35.0% | |
! | AAATCTGGTTCCATAGAAGA+AGG | - | chr3_3:67030586-67030605 | Msa0466410:intron | 35.0% |
TGCTTTAATGCCTTCTTCTA+TGG | + | chr3_3:67030599-67030618 | None:intergenic | 35.0% | |
! | GTATTGATATCAAACTTCGG+AGG | - | chr3_3:67030827-67030846 | Msa0466410:intron | 35.0% |
!! | ACCACCATTTTTCAATAACC+AGG | - | chr3_3:67030912-67030931 | Msa0466410:intron | 35.0% |
TCCTGGTTATTGAAAAATGG+TGG | + | chr3_3:67030916-67030935 | None:intergenic | 35.0% | |
! | TTCTAATAGTCACCTTTTCC+TGG | + | chr3_3:67030987-67031006 | None:intergenic | 35.0% |
ACATTTGCATCACACAGATA+AGG | + | chr3_3:67031057-67031076 | None:intergenic | 35.0% | |
GAAGAACAATCTCATGGAAA+AGG | + | chr3_3:67031126-67031145 | None:intergenic | 35.0% | |
!! | ACGTTGAGATTTTGAGAACA+TGG | + | chr3_3:67031220-67031239 | None:intergenic | 35.0% |
! | AAGGAGTATGATCAGTAGAA+TGG | - | chr3_3:67031325-67031344 | Msa0466410:CDS | 35.0% |
TGCACAAAAAGAACTACAGA+AGG | + | chr3_3:67031408-67031427 | None:intergenic | 35.0% | |
CTCAACATGAAACACAAAAG+GGG | + | chr3_3:67031441-67031460 | None:intergenic | 35.0% | |
GCTCAACATGAAACACAAAA+GGG | + | chr3_3:67031442-67031461 | None:intergenic | 35.0% | |
AGCTCAACATGAAACACAAA+AGG | + | chr3_3:67031443-67031462 | None:intergenic | 35.0% | |
! | TGTGTTTCATGTTGAGCTTT+TGG | - | chr3_3:67031445-67031464 | Msa0466410:intron | 35.0% |
TTAAGAGTCTCTTGCAACTA+AGG | - | chr3_3:67031507-67031526 | Msa0466410:CDS | 35.0% | |
! | CACTAAAGCTCGAGTTTTTA+GGG | - | chr3_3:67031532-67031551 | Msa0466410:CDS | 35.0% |
TTTAGGGACTTATGTGCTTT+AGG | - | chr3_3:67031548-67031567 | Msa0466410:intron | 35.0% | |
ATTGTTGCATGATTTGATGG+CGG | - | chr3_3:67031595-67031614 | Msa0466410:intron | 35.0% | |
GGAAAATGTTCGTATTGAAG+TGG | - | chr3_3:67031649-67031668 | Msa0466410:CDS | 35.0% | |
GAGTTGACATCCTTAGATTA+TGG | - | chr3_3:67031718-67031737 | Msa0466410:CDS | 35.0% | |
CAGCATCAAAATTGTGAGAA+AGG | + | chr3_3:67031781-67031800 | None:intergenic | 35.0% | |
AGTGAGGTTGTTGTCTGTTT+CGG | + | chr3_3:67028146-67028165 | None:intergenic | 40.0% | |
!! | TCGACGGCAGTTGATAATAA+TGG | + | chr3_3:67028178-67028197 | None:intergenic | 40.0% |
TGCAACATGCTATCCATTGA+AGG | + | chr3_3:67028256-67028275 | None:intergenic | 40.0% | |
AATGGATAGCATGTTGCACT+GGG | - | chr3_3:67028258-67028277 | Msa0466410:CDS | 40.0% | |
!!! | TGACGCTTTTGAAGTTCAGT+CGG | + | chr3_3:67028432-67028451 | None:intergenic | 40.0% |
GAGCCATTGGATAATGCAAA+TGG | - | chr3_3:67028687-67028706 | Msa0466410:intron | 40.0% | |
TTGTCTCCTGTAAATAGGAC+CGG | - | chr3_3:67028927-67028946 | Msa0466410:intron | 40.0% | |
TGGTTATGAATTACTCCCTC+CGG | - | chr3_3:67029010-67029029 | Msa0466410:CDS | 40.0% | |
!! | TAGTTTTCAGGATCGTACCT+AGG | - | chr3_3:67029199-67029218 | Msa0466410:intron | 40.0% |
TAGTTTGATCGGTGAGCTAA+GGG | + | chr3_3:67029239-67029258 | None:intergenic | 40.0% | |
TTAAGGCTATGTTTGGATGG+AGG | - | chr3_3:67029478-67029497 | Msa0466410:intron | 40.0% | |
TAAGGCTATGTTTGGATGGA+GGG | - | chr3_3:67029479-67029498 | Msa0466410:intron | 40.0% | |
!!! | TTTGGATGGAGGGTTTTAGA+GGG | - | chr3_3:67029489-67029508 | Msa0466410:intron | 40.0% |
TATTAGAGCAACTGCTGCAT+GGG | - | chr3_3:67029989-67030008 | Msa0466410:intron | 40.0% | |
! | CAATCCAACTTTTCAGCAAC+AGG | - | chr3_3:67030034-67030053 | Msa0466410:intron | 40.0% |
CATACCTGTTGCTGAAAAGT+TGG | + | chr3_3:67030041-67030060 | None:intergenic | 40.0% | |
! | CAACTTTTCAGCAACAGGTA+TGG | - | chr3_3:67030039-67030058 | Msa0466410:intron | 40.0% |
TTACCAGTGAGACAAGTACT+GGG | + | chr3_3:67030344-67030363 | None:intergenic | 40.0% | |
ATTACCAGTGAGACAAGTAC+TGG | + | chr3_3:67030345-67030364 | None:intergenic | 40.0% | |
TCGGAATAATTTAGCCAGTC+AGG | - | chr3_3:67030642-67030661 | Msa0466410:intron | 40.0% | |
AGCATAGAACAATTCCTGAC+TGG | + | chr3_3:67030659-67030678 | None:intergenic | 40.0% | |
GAATTGTTCTATGCTGAAGC+TGG | - | chr3_3:67030664-67030683 | Msa0466410:intron | 40.0% | |
TGATATCAAACTTCGGAGGA+AGG | - | chr3_3:67030831-67030850 | Msa0466410:intron | 40.0% | |
! | TTTTTCTCGGTGAGAGTTGA+TGG | + | chr3_3:67031084-67031103 | None:intergenic | 40.0% |
TGATCAGTAGAATGGAAGTG+AGG | - | chr3_3:67031333-67031352 | Msa0466410:CDS | 40.0% | |
GATCAGTAGAATGGAAGTGA+GGG | - | chr3_3:67031334-67031353 | Msa0466410:CDS | 40.0% | |
!!! | GAGCTTTTGGTTTGACTTCT+TGG | - | chr3_3:67031458-67031477 | Msa0466410:intron | 40.0% |
! | CCTAAAAACTCGAGCTTTAG+TGG | + | chr3_3:67031534-67031553 | None:intergenic | 40.0% |
! | CCACTAAAGCTCGAGTTTTT+AGG | - | chr3_3:67031531-67031550 | Msa0466410:CDS | 40.0% |
GGATCAGAGAGACTATGTAA+TGG | - | chr3_3:67031622-67031641 | Msa0466410:intron | 40.0% | |
!! | GAGAGACTATGTAATGGATG+TGG | - | chr3_3:67031628-67031647 | Msa0466410:intron | 40.0% |
!! | ACTGCTTTTCCAGCTTTCTA+TGG | + | chr3_3:67031685-67031704 | None:intergenic | 40.0% |
AGGGACAAGACCATAATCTA+AGG | + | chr3_3:67031731-67031750 | None:intergenic | 40.0% | |
ACTCGCTCTCATACTCTTCA+CGG | - | chr3_3:67028108-67028127 | Msa0466410:three_prime_UTR | 45.0% | |
GAGTAGATCGGATTCATCGA+CGG | + | chr3_3:67028194-67028213 | None:intergenic | 45.0% | |
CAATGGATAGCATGTTGCAC+TGG | - | chr3_3:67028257-67028276 | Msa0466410:CDS | 45.0% | |
!! | TCTTGAGCTTGTTGAGCCAT+TGG | - | chr3_3:67028674-67028693 | Msa0466410:intron | 45.0% |
CTCTTGTAAATGAGACCGGA+GGG | + | chr3_3:67028811-67028830 | None:intergenic | 45.0% | |
TCTCTTGTAAATGAGACCGG+AGG | + | chr3_3:67028812-67028831 | None:intergenic | 45.0% | |
GTAGTTTGATCGGTGAGCTA+AGG | + | chr3_3:67029240-67029259 | None:intergenic | 45.0% | |
GCTCACCGATCAAACTACTT+AGG | - | chr3_3:67029242-67029261 | Msa0466410:CDS | 45.0% | |
!! | GTTTGGATGGAGGGTTTTAG+AGG | - | chr3_3:67029488-67029507 | Msa0466410:intron | 45.0% |
!!! | TTGGATGGAGGGTTTTAGAG+GGG | - | chr3_3:67029490-67029509 | Msa0466410:intron | 45.0% |
AGAGTGGTAGATCCCAATGT+TGG | - | chr3_3:67029691-67029710 | Msa0466410:intron | 45.0% | |
!! | TGAGAGAAGGCACCAACATT+GGG | + | chr3_3:67029706-67029725 | None:intergenic | 45.0% |
GTATTAGAGCAACTGCTGCA+TGG | - | chr3_3:67029988-67030007 | Msa0466410:intron | 45.0% | |
ATTCTACAACAGCGCAACAC+TGG | + | chr3_3:67030186-67030205 | None:intergenic | 45.0% | |
GCGCTGTTGTAGAATTGCAA+TGG | - | chr3_3:67030191-67030210 | Msa0466410:intron | 45.0% | |
TTTGCATGAGAGGCAGTTGA+GGG | + | chr3_3:67030391-67030410 | None:intergenic | 45.0% | |
CTATTCCAGGTCTTGGAACT+CGG | - | chr3_3:67030535-67030554 | Msa0466410:intron | 45.0% | |
! | ACGCTGTTTCAGCTTTGACT+CGG | - | chr3_3:67030623-67030642 | Msa0466410:intron | 45.0% |
TTGTTCTATGCTGAAGCTGG+AGG | - | chr3_3:67030667-67030686 | Msa0466410:intron | 45.0% | |
CCACAGACTTTAACAGATCC+TGG | + | chr3_3:67030933-67030952 | None:intergenic | 45.0% | |
CCAGGATCTGTTAAAGTCTG+TGG | - | chr3_3:67030930-67030949 | Msa0466410:intron | 45.0% | |
! | CTTTTCCTGGAGATCAAGGT+CGG | + | chr3_3:67030974-67030993 | None:intergenic | 45.0% |
! | TCACCTTTTCCTGGAGATCA+AGG | + | chr3_3:67030978-67030997 | None:intergenic | 45.0% |
GTAGAATGGAAGTGAGGGAT+TGG | - | chr3_3:67031339-67031358 | Msa0466410:CDS | 45.0% | |
GTTGTTGTCTGTTTCGGCGA+CGG | + | chr3_3:67028140-67028159 | None:intergenic | 50.0% | |
ATAATGGCTGACGGGAAGTG+AGG | + | chr3_3:67028162-67028181 | None:intergenic | 50.0% | |
CATTGAAGGAAACCCGCCAT+CGG | + | chr3_3:67028242-67028261 | None:intergenic | 50.0% | |
TCTCCTGTAAATAGGACCGG+AGG | - | chr3_3:67028930-67028949 | Msa0466410:intron | 50.0% | |
CTCCTGTAAATAGGACCGGA+GGG | - | chr3_3:67028931-67028950 | Msa0466410:intron | 50.0% | |
ATCGTACCTAGGACCTCCTT+CGG | - | chr3_3:67029210-67029229 | Msa0466410:intron | 50.0% | |
!! | CTGAGAGAAGGCACCAACAT+TGG | + | chr3_3:67029707-67029726 | None:intergenic | 50.0% |
!! | CAAACTTGGTGGGCTTCATG+CGG | - | chr3_3:67029935-67029954 | Msa0466410:CDS | 50.0% |
GGTTGGGAGAAGATCAATGC+AGG | + | chr3_3:67030287-67030306 | None:intergenic | 50.0% | |
GATCCCAGTACTTGTCTCAC+TGG | - | chr3_3:67030338-67030357 | Msa0466410:intron | 50.0% | |
TTGCATGAGAGGCAGTTGAG+GGG | + | chr3_3:67030390-67030409 | None:intergenic | 50.0% | |
GTTTGCATGAGAGGCAGTTG+AGG | + | chr3_3:67030392-67030411 | None:intergenic | 50.0% | |
!! | TGGAACTCGGTGTACTCTCA+AGG | - | chr3_3:67030548-67030567 | Msa0466410:intron | 50.0% |
AGCTGGAGGTTTGATGCTTC+AGG | - | chr3_3:67030681-67030700 | Msa0466410:intron | 50.0% | |
TTCAACCGACCTTGATCTCC+AGG | - | chr3_3:67030966-67030985 | Msa0466410:intron | 50.0% | |
CGACCTTGATCTCCAGGAAA+AGG | - | chr3_3:67030972-67030991 | Msa0466410:intron | 50.0% | |
!! | GCATGATTTGATGGCGGATG+AGG | - | chr3_3:67031601-67031620 | Msa0466410:intron | 50.0% |
AGGAGTTGGCATGGAAGCTG+AGG | - | chr3_3:67028005-67028024 | Msa0466410:three_prime_UTR | 55.0% | |
CGCTCTCATACTCTTCACGG+CGG | - | chr3_3:67028111-67028130 | Msa0466410:three_prime_UTR | 55.0% | |
TGAATCCGATCTACTCCCGC+CGG | - | chr3_3:67028198-67028217 | Msa0466410:three_prime_UTR | 55.0% | |
!! | CGATGGCGGGTTTCCTTCAA+TGG | - | chr3_3:67028240-67028259 | Msa0466410:CDS | 55.0% |
CTCCCTCCGGTCCTATTTAC+AGG | + | chr3_3:67028936-67028955 | None:intergenic | 55.0% | |
!!! | GATGGAGGGTTTTAGAGGGG+AGG | - | chr3_3:67029493-67029512 | Msa0466410:intron | 55.0% |
GCAACTGCTGCATGGGTTCT+TGG | - | chr3_3:67029996-67030015 | Msa0466410:intron | 55.0% | |
! | GGATACTAGGGGAGAGTGCA+GGG | + | chr3_3:67030252-67030271 | None:intergenic | 55.0% |
! | AGGATACTAGGGGAGAGTGC+AGG | + | chr3_3:67030253-67030272 | None:intergenic | 55.0% |
GTACACCGAGTTCCAAGACC+TGG | + | chr3_3:67030543-67030562 | None:intergenic | 55.0% | |
GAGTCGGAAAGAGCGGCATC+CGG | + | chr3_3:67028220-67028239 | None:intergenic | 60.0% | |
GCCATCGGAGTCGGAAAGAG+CGG | + | chr3_3:67028227-67028246 | None:intergenic | 60.0% | |
GCTCTTTCCGACTCCGATGG+CGG | - | chr3_3:67028226-67028245 | Msa0466410:CDS | 60.0% | |
CTCTTTCCGACTCCGATGGC+GGG | - | chr3_3:67028227-67028246 | Msa0466410:CDS | 60.0% | |
AGGAAACCCGCCATCGGAGT+CGG | + | chr3_3:67028236-67028255 | None:intergenic | 60.0% | |
GAGCTAAGGGACACCGAAGG+AGG | + | chr3_3:67029226-67029245 | None:intergenic | 60.0% | |
GGTGAGCTAAGGGACACCGA+AGG | + | chr3_3:67029229-67029248 | None:intergenic | 60.0% | |
GGCATCCGGCGGGAGTAGAT+CGG | + | chr3_3:67028206-67028225 | None:intergenic | 65.0% | |
TCGGAAAGAGCGGCATCCGG+CGG | + | chr3_3:67028217-67028236 | None:intergenic | 65.0% | |
GCCGCTCTTTCCGACTCCGA+TGG | - | chr3_3:67028223-67028242 | Msa0466410:CDS | 65.0% | |
GGGACACCGAAGGAGGTCCT+AGG | + | chr3_3:67029219-67029238 | None:intergenic | 65.0% | |
CGGAAAGAGCGGCATCCGGC+GGG | + | chr3_3:67028216-67028235 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 67027983 | 67031942 | 67027983 | ID=Msa0466410;Name=Msa0466410 |
chr3_3 | mRNA | 67027983 | 67031942 | 67027983 | ID=Msa0466410-mRNA-1;Parent=Msa0466410;Name=Msa0466410-mRNA-1;_AED=0.18;_eAED=0.18;_QI=105|1|1|1|1|1|7|236|375 |
chr3_3 | exon | 67027983 | 67028431 | 67027983 | ID=Msa0466410-mRNA-1:exon:15413;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67028932 | 67029117 | 67028932 | ID=Msa0466410-mRNA-1:exon:15412;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67029223 | 67029381 | 67029223 | ID=Msa0466410-mRNA-1:exon:15411;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67029870 | 67029997 | 67029870 | ID=Msa0466410-mRNA-1:exon:15410;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67031217 | 67031367 | 67031217 | ID=Msa0466410-mRNA-1:exon:15409;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67031461 | 67031552 | 67031461 | ID=Msa0466410-mRNA-1:exon:15408;Parent=Msa0466410-mRNA-1 |
chr3_3 | exon | 67031639 | 67031942 | 67031639 | ID=Msa0466410-mRNA-1:exon:15407;Parent=Msa0466410-mRNA-1 |
chr3_3 | five_prime_UTR | 67031838 | 67031942 | 67031838 | ID=Msa0466410-mRNA-1:five_prime_utr;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67031639 | 67031837 | 67031639 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67031461 | 67031552 | 67031461 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67031217 | 67031367 | 67031217 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67029870 | 67029997 | 67029870 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67029223 | 67029381 | 67029223 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67028932 | 67029117 | 67028932 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | CDS | 67028219 | 67028431 | 67028219 | ID=Msa0466410-mRNA-1:cds;Parent=Msa0466410-mRNA-1 |
chr3_3 | three_prime_UTR | 67027983 | 67028218 | 67027983 | ID=Msa0466410-mRNA-1:three_prime_utr;Parent=Msa0466410-mRNA-1 |
Gene Sequence |
Protein sequence |