AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236510 MtrunA17_Chr2g0279451 96.729 214 5 1 1 212 1 214 5.13e-154 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236510 AT5G51220.3 72.021 193 49 2 23 212 35 225 1.20e-102 296
Msa0236510 AT5G51220.1 71.795 195 50 2 23 214 35 227 2.17e-102 298
Msa0236510 AT5G51220.2 75.904 166 40 0 49 214 1 166 1.24e-96 281

Find 68 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTATTGCTTCGTTAA+TGG 0.128288 2_2:-9511813 None:intergenic
GGAAATGATGGCGTTGAATT+TGG 0.181254 2_2:+9513991 Msa0236510:CDS
TGAGGCGGCGGAGGAGGAGG+AGG 0.248153 2_2:-9511773 None:intergenic
GGTAAATGAGCCTGATTATC+AGG 0.261509 2_2:+9512186 Msa0236510:CDS
TTGGTCTAAACCCTGTTCTT+TGG 0.271400 2_2:+9512138 Msa0236510:CDS
CGCTTAAGCCCCTGATAATC+AGG 0.308368 2_2:-9512196 None:intergenic
TGCCCCTCGATTCGCCTCTT+CGG 0.320984 2_2:+9512164 Msa0236510:CDS
GAGGAATGAGGCGGCGGAGG+AGG 0.350394 2_2:-9511779 None:intergenic
GAAATGATGGCGTTGAATTT+GGG 0.351199 2_2:+9513992 Msa0236510:CDS
GCCCCTCGATTCGCCTCTTC+GGG 0.360935 2_2:+9512165 Msa0236510:CDS
GGAGGAGGAGGAGAGGAGAC+TGG 0.361577 2_2:-9511758 None:intergenic
AAATCACTAGGTTTAGCTTC+TGG 0.361912 2_2:-9514294 None:intergenic
TTAACCTAGACAAACTGTTT+TGG 0.362402 2_2:+9512119 Msa0236510:CDS
GAATGAGGCGGCGGAGGAGG+AGG 0.366823 2_2:-9511776 None:intergenic
GGCGGCGGAGGAGGAGGAGG+AGG 0.387932 2_2:-9511770 None:intergenic
CTGCAACCCTAGCGTAGGTT+TGG 0.412648 2_2:-9511906 None:intergenic
GAGGGGCAGTGCCAAAGAAC+AGG 0.416860 2_2:-9512149 None:intergenic
AATAGAACTCACCCCAGCTT+TGG 0.423024 2_2:-9514061 None:intergenic
CATGATTGTAAATCTCATAA+AGG 0.423400 2_2:-9514020 None:intergenic
CTAGCGTAGGTTTGGTGCAT+TGG 0.434156 2_2:-9511898 None:intergenic
TTAACCTACTATTGATTAAG+TGG 0.435138 2_2:+9514211 Msa0236510:CDS
TCTGTCTGCAGTGTTTAACT+TGG 0.440831 2_2:+9513894 Msa0236510:intron
TCATCCACTTAATCAATAGT+AGG 0.450487 2_2:-9514215 None:intergenic
TGCTACTGTTATATGGAGGT+TGG 0.450553 2_2:+9514317 Msa0236510:CDS
GACGTGATCTGCTGCTGAGA+TGG 0.451569 2_2:-9511734 None:intergenic
AGCTTAGAGTCTCCAAAGCT+GGG 0.460157 2_2:+9514049 Msa0236510:CDS
GAGCTTAGAGTCTCCAAAGC+TGG 0.463793 2_2:+9514048 Msa0236510:CDS
TGAGATGGGTGGCTGTCTGC+TGG 0.464376 2_2:-9511719 None:intergenic
GATAAACCGCTTATTTATGA+AGG 0.469297 2_2:+9512310 Msa0236510:CDS
GATGAGGAATGAGGCGGCGG+AGG 0.480547 2_2:-9511782 None:intergenic
ACGTGATCTGCTGCTGAGAT+GGG 0.495634 2_2:-9511733 None:intergenic
TAGACCAAAACAGTTTGTCT+AGG 0.521027 2_2:-9512123 None:intergenic
CTTTGCTTGTACTTCACATG+TGG 0.521799 2_2:+9513941 Msa0236510:CDS
CAATGCACCAAACCTACGCT+AGG 0.525649 2_2:+9511899 Msa0236510:CDS
GAATCAGAATGTTTCGAACA+TGG 0.526755 2_2:+9511839 Msa0236510:exon
TCTACGATTGGTGGTGGTGG+TGG 0.542684 2_2:-9511934 None:intergenic
TACCCGAAGAGGCGAATCGA+GGG 0.544907 2_2:-9512167 None:intergenic
GTTAAGCAAGAGGGAAATGA+TGG 0.552109 2_2:+9513979 Msa0236510:CDS
ACTATTGATTAAGTGGATGA+AGG 0.554316 2_2:+9514218 Msa0236510:CDS
GGGTGGCTGTCTGCTGGACA+CGG 0.554909 2_2:-9511713 None:intergenic
TGTTCTACGATTGGTGGTGG+TGG 0.555296 2_2:-9511937 None:intergenic
GTAAATGAGCCTGATTATCA+GGG 0.561045 2_2:+9512187 Msa0236510:CDS
CTTGCGCCGCGTTAAGCAAG+AGG 0.569416 2_2:+9513969 Msa0236510:CDS
AAGCAGAGTAAATCAATTCG+AGG 0.571815 2_2:+9512250 Msa0236510:CDS
AGCAGAGTAAATCAATTCGA+GGG 0.572549 2_2:+9512251 Msa0236510:CDS
CGAGATGAGGAATGAGGCGG+CGG 0.576205 2_2:-9511785 None:intergenic
TGAGATTTACAATCATGATG+TGG 0.579398 2_2:+9514026 Msa0236510:CDS
GAGAGACGAGATGAGGAATG+AGG 0.593856 2_2:-9511791 None:intergenic
GGAGTACGAAATTTAGAGAG+TGG 0.595972 2_2:-9511877 None:intergenic
AACTAACCTTCATAAATAAG+CGG 0.600276 2_2:-9512316 None:intergenic
TCAGGCTCATTTACCCGAAG+AGG 0.601807 2_2:-9512178 None:intergenic
TGATCTGCTGCTGAGATGGG+TGG 0.608986 2_2:-9511730 None:intergenic
AACTCACTCACTCTCAACAC+GGG 0.612689 2_2:-9511664 None:intergenic
TTGCGCCGCGTTAAGCAAGA+GGG 0.620283 2_2:+9513970 Msa0236510:CDS
GAACTCACTCACTCTCAACA+CGG 0.628857 2_2:-9511665 None:intergenic
AGAACAAAAGATCGAACCTA+CGG 0.635712 2_2:+9511954 Msa0236510:CDS
AGGGGCAGTGCCAAAGAACA+GGG 0.641647 2_2:-9512148 None:intergenic
AATGCACCAAACCTACGCTA+GGG 0.644542 2_2:+9511900 Msa0236510:CDS
TTACCCGAAGAGGCGAATCG+AGG 0.644838 2_2:-9512168 None:intergenic
CATTTCCCTCTTGCTTAACG+CGG 0.646301 2_2:-9513975 None:intergenic
TGCAGCTGCAACCCTAGCGT+AGG 0.656897 2_2:-9511911 None:intergenic
ACCCGAAGAGGCGAATCGAG+GGG 0.659968 2_2:-9512166 None:intergenic
GCAGAGTAAATCAATTCGAG+GGG 0.660889 2_2:+9512252 Msa0236510:CDS
ATAACAGTAGCAAAATCACT+AGG 0.678657 2_2:-9514306 None:intergenic
GCTTAGAGTCTCCAAAGCTG+GGG 0.680406 2_2:+9514050 Msa0236510:CDS
AGACGAGATGAGGAATGAGG+CGG 0.682124 2_2:-9511788 None:intergenic
GTTAATGGAGAGACGAGATG+AGG 0.698896 2_2:-9511798 None:intergenic
TAAATGAGCCTGATTATCAG+GGG 0.701090 2_2:+9512188 Msa0236510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTAAAAACTTTATTTTA+TGG + chr2_2:9513615-9513634 Msa0236510:intron 10.0%
!!! AAACATATAATTTTAGAAAA+TGG - chr2_2:9513767-9513786 None:intergenic 10.0%
!! ATTGTAAGAAAATTAATTTA+TGG - chr2_2:9514111-9514130 None:intergenic 10.0%
!!! TTTTAGTTTTTGTTAAAAAC+AGG + chr2_2:9511689-9511708 Msa0236510:five_prime_UTR 15.0%
!! AAGATATATTTGGATTTAAA+TGG - chr2_2:9513446-9513465 None:intergenic 15.0%
!! TAAATCCAAATATATCTTAA+TGG + chr2_2:9513448-9513467 Msa0236510:intron 15.0%
!! AAATTATATGTTTAGAAATC+AGG + chr2_2:9513774-9513793 Msa0236510:intron 15.0%
!!! TTTCTTTCTCTGTTTTTATT+GGG + chr2_2:9513115-9513134 Msa0236510:intron 20.0%
!! AAATATTTGTCAAACCATTA+AGG - chr2_2:9513282-9513301 None:intergenic 20.0%
!! TCAAACCATTAAGATATATT+TGG - chr2_2:9513456-9513475 None:intergenic 20.0%
!!! GTTTGACAAATTATTTTCTT+TGG + chr2_2:9513470-9513489 Msa0236510:intron 20.0%
!! TGAAGATTTCATTTATCTTT+AGG - chr2_2:9513593-9513612 None:intergenic 20.0%
!! GAGAAAAATATATCAAAAAG+AGG - chr2_2:9513674-9513693 None:intergenic 20.0%
! ATCAATTATTGCTTCGTTAA+TGG - chr2_2:9511816-9511835 None:intergenic 25.0%
! TTAATTTAATTGCATACCGT+AGG - chr2_2:9511973-9511992 None:intergenic 25.0%
! AACTAACCTTCATAAATAAG+CGG - chr2_2:9512319-9512338 None:intergenic 25.0%
!! TACACACATGTATTTTCTAA+TGG - chr2_2:9512355-9512374 None:intergenic 25.0%
! CTTATAGCATAAGAACTTAT+AGG - chr2_2:9512420-9512439 None:intergenic 25.0%
! AGCTTATAGCTATATGAAAA+CGG - chr2_2:9512477-9512496 None:intergenic 25.0%
! GTTTATTTGAGCTTATCTAT+TGG - chr2_2:9512611-9512630 None:intergenic 25.0%
! GGGAATAATGACATATATTA+TGG - chr2_2:9512648-9512667 None:intergenic 25.0%
!! TTTTGTAATTTCACAACTAG+TGG + chr2_2:9512741-9512760 Msa0236510:intron 25.0%
! TACCAAATAAAATTCAGTTG+GGG - chr2_2:9512897-9512916 None:intergenic 25.0%
! CTACCAAATAAAATTCAGTT+GGG - chr2_2:9512898-9512917 None:intergenic 25.0%
! TCTACCAAATAAAATTCAGT+TGG - chr2_2:9512899-9512918 None:intergenic 25.0%
!!! CTTTCTTTCTCTGTTTTTAT+TGG + chr2_2:9513114-9513133 Msa0236510:intron 25.0%
!!! TTCTTTCTCTGTTTTTATTG+GGG + chr2_2:9513116-9513135 Msa0236510:intron 25.0%
! AATAAAAACAACTAAGCCTT+AGG + chr2_2:9513177-9513196 Msa0236510:intron 25.0%
! AAGGTAGATTTGGATATAAA+TGG - chr2_2:9513263-9513282 None:intergenic 25.0%
! TATATCCAAATCTACCTTAA+TGG + chr2_2:9513265-9513284 Msa0236510:intron 25.0%
!! GTTTGACAAATATTTTTCCT+TGG + chr2_2:9513287-9513306 Msa0236510:intron 25.0%
!! ATACTACATTGTTAGCTTAT+AGG - chr2_2:9513522-9513541 None:intergenic 25.0%
! AATCATTAGAGAAAAAGTCA+AGG - chr2_2:9513565-9513584 None:intergenic 25.0%
! AAAAGTTGTCTTTACTTAAG+TGG - chr2_2:9513713-9513732 None:intergenic 25.0%
! CATGATTGTAAATCTCATAA+AGG - chr2_2:9514023-9514042 None:intergenic 25.0%
!! ATGTACTCACAAACTATTTT+GGG - chr2_2:9514138-9514157 None:intergenic 25.0%
!!! GTCATTTAATTTGAAATGAC+AGG + chr2_2:9514188-9514207 Msa0236510:intron 25.0%
!! TTAACCTACTATTGATTAAG+TGG + chr2_2:9514211-9514230 Msa0236510:CDS 25.0%
! CTTTATTGTTATTCTGTGTC+CGG - chr2_2:9512053-9512072 None:intergenic 30.0%
!!! TTATTTTTTGTGTGCTTTGC+AGG + chr2_2:9512096-9512115 Msa0236510:intron 30.0%
! TTAACCTAGACAAACTGTTT+TGG + chr2_2:9512119-9512138 Msa0236510:CDS 30.0%
GATAAACCGCTTATTTATGA+AGG + chr2_2:9512310-9512329 Msa0236510:CDS 30.0%
AATATGAGCCAAAGAATAGA+GGG - chr2_2:9513011-9513030 None:intergenic 30.0%
AAATATGAGCCAAAGAATAG+AGG - chr2_2:9513012-9513031 None:intergenic 30.0%
!!! TCTTTCTCTGTTTTTATTGG+GGG + chr2_2:9513117-9513136 Msa0236510:intron 30.0%
CATGAATCATGTTCAATGAT+AGG + chr2_2:9513237-9513256 Msa0236510:intron 30.0%
TCAAACCATTAAGGTAGATT+TGG - chr2_2:9513273-9513292 None:intergenic 30.0%
! AACTAAAGCCTTTTCCTATT+AGG + chr2_2:9513360-9513379 Msa0236510:intron 30.0%
CATGAATCATGTTCAATGAT+AGG + chr2_2:9513237-9513256 Msa0236510:intron 30.0%
! CATTGTTAGCTTATAGGAAA+AGG - chr2_2:9513516-9513535 None:intergenic 30.0%
! TGTAGTATCTTTTCTACAAC+AGG + chr2_2:9513534-9513553 Msa0236510:intron 30.0%
GACAGAAGAAAGAAGTTTAT+AGG - chr2_2:9513880-9513899 None:intergenic 30.0%
TGAGATTTACAATCATGATG+TGG + chr2_2:9514026-9514045 Msa0236510:CDS 30.0%
! CATGTACTCACAAACTATTT+TGG - chr2_2:9514139-9514158 None:intergenic 30.0%
! AATAGTTTGTGAGTACATGT+AGG + chr2_2:9514140-9514159 Msa0236510:intron 30.0%
TCATCCACTTAATCAATAGT+AGG - chr2_2:9514218-9514237 None:intergenic 30.0%
! ACTATTGATTAAGTGGATGA+AGG + chr2_2:9514218-9514237 Msa0236510:CDS 30.0%
ATAACAGTAGCAAAATCACT+AGG - chr2_2:9514309-9514328 None:intergenic 30.0%
! GTGATTTTGCTACTGTTATA+TGG + chr2_2:9514310-9514329 Msa0236510:CDS 30.0%
! ATTTTGCTACTGTTATATGG+AGG + chr2_2:9514313-9514332 Msa0236510:CDS 30.0%
GAATCAGAATGTTTCGAACA+TGG + chr2_2:9511839-9511858 Msa0236510:exon 35.0%
! ATCTTTTGTTCTACGATTGG+TGG - chr2_2:9511946-9511965 None:intergenic 35.0%
! TCGATCTTTTGTTCTACGAT+TGG - chr2_2:9511949-9511968 None:intergenic 35.0%
AGAACAAAAGATCGAACCTA+CGG + chr2_2:9511954-9511973 Msa0236510:CDS 35.0%
TAGACCAAAACAGTTTGTCT+AGG - chr2_2:9512126-9512145 None:intergenic 35.0%
GTAAATGAGCCTGATTATCA+GGG + chr2_2:9512187-9512206 Msa0236510:CDS 35.0%
TAAATGAGCCTGATTATCAG+GGG + chr2_2:9512188-9512207 Msa0236510:CDS 35.0%
AAGCAGAGTAAATCAATTCG+AGG + chr2_2:9512250-9512269 Msa0236510:CDS 35.0%
AGCAGAGTAAATCAATTCGA+GGG + chr2_2:9512251-9512270 Msa0236510:CDS 35.0%
TTTCTAATGGCATGAAGAGA+AGG - chr2_2:9512342-9512361 None:intergenic 35.0%
ACATGTGTGTAGACTTTGTT+TGG + chr2_2:9512364-9512383 Msa0236510:intron 35.0%
! GACTTTGTTTGGATACACTA+CGG + chr2_2:9512375-9512394 Msa0236510:intron 35.0%
CTTATTCTTGTAAACTCTCC+AGG - chr2_2:9512515-9512534 None:intergenic 35.0%
ATGTCATTATTCCCACACAA+AGG + chr2_2:9512654-9512673 Msa0236510:intron 35.0%
ATCAATTCACTCATCTAGGT+CGG + chr2_2:9512711-9512730 Msa0236510:intron 35.0%
AACTCTCAAACTAAACTACC+GGG - chr2_2:9512816-9512835 None:intergenic 35.0%
CAACTCTCAAACTAAACTAC+CGG - chr2_2:9512817-9512836 None:intergenic 35.0%
!! GTAGTTTAGTTTGAGAGTTG+TGG + chr2_2:9512817-9512836 Msa0236510:intron 35.0%
! TCTTGCTTGTTTCTCATTAG+TGG + chr2_2:9512856-9512875 Msa0236510:intron 35.0%
! CTTGCTTGTTTCTCATTAGT+GGG + chr2_2:9512857-9512876 Msa0236510:intron 35.0%
TCTCATTAGTGGGATGATTT+AGG + chr2_2:9512867-9512886 Msa0236510:intron 35.0%
CAAATAAAATTCAGTTGGGG+TGG - chr2_2:9512894-9512913 None:intergenic 35.0%
! CACCCCAACTGAATTTTATT+TGG + chr2_2:9512892-9512911 Msa0236510:intron 35.0%
GTAATACACACATGAACACT+TGG - chr2_2:9513085-9513104 None:intergenic 35.0%
! AAAGCCTTTTCCTATTAGGT+AGG + chr2_2:9513364-9513383 Msa0236510:intron 35.0%
TGGTCTCTCTAATCAACAAT+TGG + chr2_2:9513490-9513509 Msa0236510:intron 35.0%
GTTGTCTTTACTTAAGTGGT+TGG - chr2_2:9513709-9513728 None:intergenic 35.0%
! TTTTAAACTCCAGCATGTTC+TGG + chr2_2:9513729-9513748 Msa0236510:intron 35.0%
TGTAGAAGGAGTTTGATGTA+TGG + chr2_2:9513816-9513835 Msa0236510:intron 35.0%
! GAAATGATGGCGTTGAATTT+GGG + chr2_2:9513992-9514011 Msa0236510:CDS 35.0%
! AGCTCGAGAAGATCTTTTAT+GGG + chr2_2:9514241-9514260 Msa0236510:CDS 35.0%
! AAATCACTAGGTTTAGCTTC+TGG - chr2_2:9514297-9514316 None:intergenic 35.0%
GGAGTACGAAATTTAGAGAG+TGG - chr2_2:9511880-9511899 None:intergenic 40.0%
! TTTTGTTCTACGATTGGTGG+TGG - chr2_2:9511943-9511962 None:intergenic 40.0%
TTGGTCTAAACCCTGTTCTT+TGG + chr2_2:9512138-9512157 Msa0236510:CDS 40.0%
GGTAAATGAGCCTGATTATC+AGG + chr2_2:9512186-9512205 Msa0236510:CDS 40.0%
GCAGAGTAAATCAATTCGAG+GGG + chr2_2:9512252-9512271 Msa0236510:CDS 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG + chr2_2:9512494-9512513 Msa0236510:intron 40.0%
CCATATGCAAACCTTTGTGT+GGG - chr2_2:9512668-9512687 None:intergenic 40.0%
TCCATATGCAAACCTTTGTG+TGG - chr2_2:9512669-9512688 None:intergenic 40.0%
! TGAGTGAATTGATGGACCAT+AGG - chr2_2:9512704-9512723 None:intergenic 40.0%
GTCCATCAATTCACTCATCT+AGG + chr2_2:9512707-9512726 Msa0236510:intron 40.0%
GACCTAGATGAGTGAATTGA+TGG - chr2_2:9512712-9512731 None:intergenic 40.0%
AAACTCCTCCACATGTACTA+CGG + chr2_2:9512963-9512982 Msa0236510:intron 40.0%
TCGTTTCTCTCGCGAATATT+TGG + chr2_2:9513040-9513059 Msa0236510:intron 40.0%
!!! CTGTTTTTATTGGGGGCTTT+TGG + chr2_2:9513124-9513143 Msa0236510:intron 40.0%
! ATTGTTGATGAGAGAGACCA+AGG - chr2_2:9513307-9513326 None:intergenic 40.0%
CGATCCTACCTAATAGGAAA+AGG - chr2_2:9513371-9513390 None:intergenic 40.0%
CAAAGTCGATCCTACCTAAT+AGG - chr2_2:9513377-9513396 None:intergenic 40.0%
TCAAGCACATTCAGTGTAGA+AGG + chr2_2:9513802-9513821 Msa0236510:intron 40.0%
TCTGTCTGCAGTGTTTAACT+TGG + chr2_2:9513894-9513913 Msa0236510:intron 40.0%
CTTTGCTTGTACTTCACATG+TGG + chr2_2:9513941-9513960 Msa0236510:CDS 40.0%
GTTAAGCAAGAGGGAAATGA+TGG + chr2_2:9513979-9513998 Msa0236510:CDS 40.0%
! GGAAATGATGGCGTTGAATT+TGG + chr2_2:9513991-9514010 Msa0236510:CDS 40.0%
TGACCTCTCTTGATGAATTG+TGG + chr2_2:9514166-9514185 Msa0236510:intron 40.0%
TGACCACAATTCATCAAGAG+AGG - chr2_2:9514172-9514191 None:intergenic 40.0%
! GAGCTCGAGAAGATCTTTTA+TGG + chr2_2:9514240-9514259 Msa0236510:CDS 40.0%
TGCTACTGTTATATGGAGGT+TGG + chr2_2:9514317-9514336 Msa0236510:CDS 40.0%
AACTCACTCACTCTCAACAC+GGG - chr2_2:9511667-9511686 None:intergenic 45.0%
GAACTCACTCACTCTCAACA+CGG - chr2_2:9511668-9511687 None:intergenic 45.0%
GTTAATGGAGAGACGAGATG+AGG - chr2_2:9511801-9511820 None:intergenic 45.0%
AATGCACCAAACCTACGCTA+GGG + chr2_2:9511900-9511919 Msa0236510:CDS 45.0%
AATCACATGTGTCAGTGTCG+TGG + chr2_2:9512012-9512031 Msa0236510:intron 45.0%
CCCACACAAAGGTTTGCATA+TGG + chr2_2:9512665-9512684 Msa0236510:intron 45.0%
TTCACTCATCTAGGTCGGTT+TGG + chr2_2:9512716-9512735 Msa0236510:intron 45.0%
ATATGTGTGCATGTGCATCC+CGG + chr2_2:9512795-9512814 Msa0236510:intron 45.0%
AACTCCTCCACATGTACTAC+GGG + chr2_2:9512964-9512983 Msa0236510:intron 45.0%
CCAAAGAATAGAGGGATGTG+AGG - chr2_2:9513003-9513022 None:intergenic 45.0%
CCTCACATCCCTCTATTCTT+TGG + chr2_2:9513000-9513019 Msa0236510:intron 45.0%
CACAAAGTCGATCGTACCTA+AGG - chr2_2:9513196-9513215 None:intergenic 45.0%
! GGTACGATCGACTTTGTGAA+TGG + chr2_2:9513198-9513217 Msa0236510:intron 45.0%
TAAACTCCAGCATGTTCTGG+TGG + chr2_2:9513732-9513751 Msa0236510:intron 45.0%
CATTTCCCTCTTGCTTAACG+CGG - chr2_2:9513978-9513997 None:intergenic 45.0%
AGCTTAGAGTCTCCAAAGCT+GGG + chr2_2:9514049-9514068 Msa0236510:CDS 45.0%
AATAGAACTCACCCCAGCTT+TGG - chr2_2:9514064-9514083 None:intergenic 45.0%
ACGTGATCTGCTGCTGAGAT+GGG - chr2_2:9511736-9511755 None:intergenic 50.0%
AGACGAGATGAGGAATGAGG+CGG - chr2_2:9511791-9511810 None:intergenic 50.0%
GAGAGACGAGATGAGGAATG+AGG - chr2_2:9511794-9511813 None:intergenic 50.0%
!! CTAGCGTAGGTTTGGTGCAT+TGG - chr2_2:9511901-9511920 None:intergenic 50.0%
CAATGCACCAAACCTACGCT+AGG + chr2_2:9511899-9511918 Msa0236510:CDS 50.0%
!! TGTTCTACGATTGGTGGTGG+TGG - chr2_2:9511940-9511959 None:intergenic 50.0%
ATGTGTCAGTGTCGTGGTGT+TGG + chr2_2:9512018-9512037 Msa0236510:intron 50.0%
TCAGGCTCATTTACCCGAAG+AGG - chr2_2:9512181-9512200 None:intergenic 50.0%
CGCTTAAGCCCCTGATAATC+AGG - chr2_2:9512199-9512218 None:intergenic 50.0%
!! TGGAAGTGCTTGTGCACCTA+TGG + chr2_2:9512685-9512704 Msa0236510:intron 50.0%
ACTCCTCCACATGTACTACG+GGG + chr2_2:9512965-9512984 Msa0236510:intron 50.0%
TGTATGCCCCGTAGTACATG+TGG - chr2_2:9512974-9512993 None:intergenic 50.0%
ATCTAGCCACCAGAACATGC+TGG - chr2_2:9513741-9513760 None:intergenic 50.0%
GAGCTTAGAGTCTCCAAAGC+TGG + chr2_2:9514048-9514067 Msa0236510:CDS 50.0%
GCTTAGAGTCTCCAAAGCTG+GGG + chr2_2:9514050-9514069 Msa0236510:CDS 50.0%
TGATCTGCTGCTGAGATGGG+TGG - chr2_2:9511733-9511752 None:intergenic 55.0%
GACGTGATCTGCTGCTGAGA+TGG - chr2_2:9511737-9511756 None:intergenic 55.0%
CTGCAACCCTAGCGTAGGTT+TGG - chr2_2:9511909-9511928 None:intergenic 55.0%
!! TCTACGATTGGTGGTGGTGG+TGG - chr2_2:9511937-9511956 None:intergenic 55.0%
! TGTCAGTGTCGTGGTGTTGG+TGG + chr2_2:9512021-9512040 Msa0236510:intron 55.0%
!! GTGGTGTTGGTGGTAGACAC+CGG + chr2_2:9512031-9512050 Msa0236510:intron 55.0%
AGGGGCAGTGCCAAAGAACA+GGG - chr2_2:9512151-9512170 None:intergenic 55.0%
TACCCGAAGAGGCGAATCGA+GGG - chr2_2:9512170-9512189 None:intergenic 55.0%
TTACCCGAAGAGGCGAATCG+AGG - chr2_2:9512171-9512190 None:intergenic 55.0%
ATGCCCCGTAGTACATGTGG+AGG - chr2_2:9512971-9512990 None:intergenic 55.0%
TTGCGCCGCGTTAAGCAAGA+GGG + chr2_2:9513970-9513989 Msa0236510:CDS 55.0%
TGAGATGGGTGGCTGTCTGC+TGG - chr2_2:9511722-9511741 None:intergenic 60.0%
CGAGATGAGGAATGAGGCGG+CGG - chr2_2:9511788-9511807 None:intergenic 60.0%
TGCAGCTGCAACCCTAGCGT+AGG - chr2_2:9511914-9511933 None:intergenic 60.0%
GAGGGGCAGTGCCAAAGAAC+AGG - chr2_2:9512152-9512171 None:intergenic 60.0%
! TGCCCCTCGATTCGCCTCTT+CGG + chr2_2:9512164-9512183 Msa0236510:CDS 60.0%
ACCCGAAGAGGCGAATCGAG+GGG - chr2_2:9512169-9512188 None:intergenic 60.0%
CTTGCGCCGCGTTAAGCAAG+AGG + chr2_2:9513969-9513988 Msa0236510:CDS 60.0%
GGGTGGCTGTCTGCTGGACA+CGG - chr2_2:9511716-9511735 None:intergenic 65.0%
GGAGGAGGAGGAGAGGAGAC+TGG - chr2_2:9511761-9511780 None:intergenic 65.0%
GATGAGGAATGAGGCGGCGG+AGG - chr2_2:9511785-9511804 None:intergenic 65.0%
! GCCCCTCGATTCGCCTCTTC+GGG + chr2_2:9512165-9512184 Msa0236510:CDS 65.0%
CGGAGGAGGAGGAGGAGGAG+AGG - chr2_2:9511768-9511787 None:intergenic 70.0%
GAATGAGGCGGCGGAGGAGG+AGG - chr2_2:9511779-9511798 None:intergenic 70.0%
GAGGAATGAGGCGGCGGAGG+AGG - chr2_2:9511782-9511801 None:intergenic 70.0%
TGAGGCGGCGGAGGAGGAGG+AGG - chr2_2:9511776-9511795 None:intergenic 75.0%
! GGCGGCGGAGGAGGAGGAGG+AGG - chr2_2:9511773-9511792 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9511642 9514350 9511642 ID=Msa0236510;Name=Msa0236510
chr2_2 mRNA 9511642 9514350 9511642 ID=Msa0236510-mRNA-1;Parent=Msa0236510;Name=Msa0236510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=205|1|0.75|1|1|1|4|0|216
chr2_2 exon 9511642 9511975 9511642 ID=Msa0236510-mRNA-1:exon:4129;Parent=Msa0236510-mRNA-1
chr2_2 exon 9512118 9512331 9512118 ID=Msa0236510-mRNA-1:exon:4130;Parent=Msa0236510-mRNA-1
chr2_2 exon 9513905 9514071 9513905 ID=Msa0236510-mRNA-1:exon:4131;Parent=Msa0236510-mRNA-1
chr2_2 exon 9514210 9514350 9514210 ID=Msa0236510-mRNA-1:exon:4132;Parent=Msa0236510-mRNA-1
chr2_2 five_prime_UTR 9511642 9511846 9511642 ID=Msa0236510-mRNA-1:five_prime_utr;Parent=Msa0236510-mRNA-1
chr2_2 CDS 9511847 9511975 9511847 ID=Msa0236510-mRNA-1:cds;Parent=Msa0236510-mRNA-1
chr2_2 CDS 9512118 9512331 9512118 ID=Msa0236510-mRNA-1:cds;Parent=Msa0236510-mRNA-1
chr2_2 CDS 9513905 9514071 9513905 ID=Msa0236510-mRNA-1:cds;Parent=Msa0236510-mRNA-1
chr2_2 CDS 9514210 9514350 9514210 ID=Msa0236510-mRNA-1:cds;Parent=Msa0236510-mRNA-1
Gene Sequence

>Msa0236510

ATGTTTCGAACATGGAGCAAAGCTATTATTCCACTCTCTAAATTTCGTACTCCAATGCACCAAACCTACGCTAGGGTTGCAGCTGCACCACCACCACCACCAATCGTAGAACAAAAGATCGAACCTACGGTTAACCTAGACAAACTGTTTTGGTCTAAACCCTGTTCTTTGGCACTGCCCCTCGATTCGCCTCTTCGGGTAAATGAGCCTGATTATCAGGGGCTTAAGCGTTTCATTTTCAAACTCATGCTCTTTTATAGTAAGCAGAGTAAATCAATTCGAGGGGCTAATGTCGTTTACAGAAGAATTGTTTCTCAAGTTGATAAACCGCTTATTTATGAAGTGTTTAACTTGGAGAAAACATTCAAAACAACATTTTCTTTGCTTGTACTTCACATGTGGTTTTACTTGCGCCGCGTTAAGCAAGAGGGAAATGATGGCGTTGAATTTGGGCAGTACCTTTATGAGATTTACAATCATGATGTGGAGCTTAGAGTCTCCAAAGCTGGGGTTAACCTACTATTGATTAAGTGGATGAAGGAGCTCGAGAAGATCTTTTATGGGAATATCGTTGCTTATGATGCTGCTATACTTCCAGAAGCTAAACCTAGTGATTTTGCTACTGTTATATGGAGGTTGGTTTTGATATGA

Protein sequence

>Msa0236510

MFRTWSKAIIPLSKFRTPMHQTYARVAAAPPPPPIVEQKIEPTVNLDKLFWSKPCSLALPLDSPLRVNEPDYQGLKRFIFKLMLFYSKQSKSIRGANVVYRRIVSQVDKPLIYEVFNLEKTFKTTFSLLVLHMWFYLRRVKQEGNDGVEFGQYLYEIYNHDVELRVSKAGVNLLLIKWMKELEKIFYGNIVAYDAAILPEAKPSDFATVIWRLVLI*