AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047110 MtrunA17_Chr4g0071571 98.049 205 4 0 1 205 421 625 5.89e-140 404
Msa0047110 MtrunA17_Chr4g0071561 82.222 180 32 0 2 181 137 316 1.10e-106 309
Msa0047110 MtrunA17_Chr6g0478431 82.143 168 30 0 38 205 437 604 3.46e-96 291
Msa0047110 MtrunA17_Chr1g0160461 79.213 178 37 0 28 205 444 621 1.74e-95 290
Msa0047110 MtrunA17_Chr4g0044181 82.249 169 30 0 37 205 491 659 4.95e-95 290
Msa0047110 MtrunA17_Chr7g0255941 72.139 201 53 1 8 205 391 591 1.10e-94 287
Msa0047110 MtrunA17_Chr1g0159341 59.024 205 81 1 1 205 326 527 2.69e-72 228
Msa0047110 MtrunA17_Chr8g0393111 64.804 179 35 2 20 175 344 517 2.67e-71 226
Msa0047110 MtrunA17_Chr7g0216571 51.244 201 88 2 5 205 177 367 6.67e-63 199
Msa0047110 MtrunA17_Chr6g0452821 50.538 186 92 0 20 205 175 360 1.82e-62 197
Msa0047110 MtrunA17_Chr7g0249141 44.898 196 96 2 15 203 169 359 4.94e-56 181
Msa0047110 MtrunA17_Chr2g0298971 45.714 210 76 4 5 184 316 517 1.91e-50 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047110 AT5G57090.2 77.114 201 46 0 5 205 347 547 5.59e-108 320
Msa0047110 AT5G57090.1 77.114 201 46 0 5 205 447 647 1.09e-106 320
Msa0047110 AT1G70940.1 73.171 205 51 2 4 205 437 640 7.83e-93 284
Msa0047110 AT2G01420.2 69.118 204 60 1 5 205 413 616 1.75e-92 283
Msa0047110 AT2G01420.1 69.118 204 60 1 5 205 409 612 1.96e-92 282
Msa0047110 AT1G23080.3 79.882 169 34 0 37 205 447 615 2.59e-88 272
Msa0047110 AT1G23080.4 79.882 169 34 0 37 205 447 615 2.59e-88 272
Msa0047110 AT1G23080.1 79.882 169 34 0 37 205 451 619 3.34e-88 271
Msa0047110 AT1G73590.1 67.488 203 61 3 8 205 420 622 4.31e-83 258
Msa0047110 AT1G77110.1 57.339 218 76 3 2 205 356 570 4.41e-77 241
Msa0047110 AT1G77110.2 55.612 196 70 3 2 183 356 548 8.01e-65 209
Msa0047110 AT5G15100.1 58.025 162 68 0 42 203 204 365 8.22e-62 196
Msa0047110 AT5G16530.1 51.282 156 76 0 48 203 192 347 1.13e-54 178
Msa0047110 AT5G16530.2 50.365 137 68 0 48 184 192 328 3.82e-46 155
Msa0047110 AT2G01420.3 61.538 104 37 1 5 105 413 516 6.76e-33 124
Msa0047110 AT1G23080.2 81.159 69 13 0 37 105 447 515 2.02e-31 119

Find 72 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAATTATTAACAAATAA+AGG 0.197004 1_1:-79786393 None:intergenic
CACCCAGTGCTGAGTATATT+TGG 0.231032 1_1:-79785968 None:intergenic
GAAATGCCATCTATTGTAAA+AGG 0.235112 1_1:+79785472 Msa0047110:CDS
TTTGGTCTCTTGTATCATTT+AGG 0.244094 1_1:+79785342 Msa0047110:CDS
ATAAGACTTGAGTAGGTATT+AGG 0.244249 1_1:-79785311 None:intergenic
AATACCTACTCAAGTCTTAT+AGG 0.254018 1_1:+79785314 Msa0047110:CDS
CTTCCAAGTCCATCTTCTTC+TGG 0.279820 1_1:-79785193 None:intergenic
GTTACATGTTGCAATTGTTC+AGG 0.321229 1_1:+79785783 Msa0047110:CDS
ATCTTCTTCTGGCTAATATA+TGG 0.325305 1_1:-79785182 None:intergenic
ACAAATTATTAACAAATAAA+GGG 0.325575 1_1:-79786392 None:intergenic
ATACTCTACTATGTGCTTCT+TGG 0.327447 1_1:+79786137 Msa0047110:CDS
TGGATGGAGATTGTATTCTT+TGG 0.334269 1_1:-79785948 None:intergenic
CACATAGTAGAGTATTGTTA+TGG 0.345910 1_1:-79786129 None:intergenic
GACTTATCCTTATCATGGTT+TGG 0.355082 1_1:+79785270 Msa0047110:CDS
GTGTGCTGCAGGGTTATATT+TGG 0.369222 1_1:+79786089 Msa0047110:intron
GGGAATGGAGATTGATCATC+TGG 0.381929 1_1:-79786371 None:intergenic
CAAGTCTTATAGGACTTGTT+TGG 0.388260 1_1:+79785324 Msa0047110:CDS
CTTTGCAACAACAGTGTACT+AGG 0.389815 1_1:-79784982 None:intergenic
TCTTGGAGTATAGTCTATCT+TGG 0.400664 1_1:+79786154 Msa0047110:exon
AGATGGACTTGGAAGGAGGA+GGG 0.406669 1_1:+79785201 Msa0047110:CDS
GATTAATGCTTTCCTGTACA+TGG 0.422389 1_1:+79785004 Msa0047110:five_prime_UTR
AGAAAGGGATGTTGAAATTG+AGG 0.424348 1_1:+79785145 Msa0047110:CDS
ATTATGATGTTGTGGCTTCA+AGG 0.425520 1_1:+79786187 Msa0047110:three_prime_UTR
GACAAGACTTATCCTTATCA+TGG 0.432617 1_1:+79785265 Msa0047110:CDS
ATACTGTCTGATGCTGGTCT+TGG 0.436774 1_1:+79785505 Msa0047110:CDS
ATTTGTTAATAATTTGTCAA+TGG 0.444644 1_1:+79786398 Msa0047110:three_prime_UTR
TTTCCTGTACATGGTCATCT+TGG 0.448871 1_1:+79785013 Msa0047110:five_prime_UTR
TTTCCACATGCAATCAGCTT+AGG 0.449414 1_1:-79785667 None:intergenic
AGTCTTGTCATGACACTTGC+TGG 0.450412 1_1:-79785251 None:intergenic
AAGATGGACTTGGAAGGAGG+AGG 0.460717 1_1:+79785200 Msa0047110:CDS
ACGGATACCAATTGCTATTG+AGG 0.461284 1_1:-79785752 None:intergenic
CACAAAGGGAACGATACCTT+GGG 0.473023 1_1:-79785921 None:intergenic
ATCTCAATACTGTCTGATGC+TGG 0.484824 1_1:+79785499 Msa0047110:CDS
GATGGACTTGGAAGGAGGAG+GGG 0.487071 1_1:+79785202 Msa0047110:CDS
GGCTCATTCAAACAAATGAA+TGG 0.492041 1_1:+79786209 Msa0047110:three_prime_UTR
GCGGCAACCTCAATAGCAAT+TGG 0.493077 1_1:+79785745 Msa0047110:CDS
ACATAGTAGAGTATTGTTAT+GGG 0.493323 1_1:-79786128 None:intergenic
TTATGATGTTGTGGCTTCAA+GGG 0.499264 1_1:+79786188 Msa0047110:three_prime_UTR
TATTCTTTGGCAAACACAAA+GGG 0.501329 1_1:-79785935 None:intergenic
AGAACATGAGTCTTAGAGAA+AGG 0.505648 1_1:+79785129 Msa0047110:exon
ATATATTAGCCAGAAGAAGA+TGG 0.507802 1_1:+79785184 Msa0047110:CDS
ACACAAAGGGAACGATACCT+TGG 0.508083 1_1:-79785922 None:intergenic
CATCCAAATATACTCAGCAC+TGG 0.523771 1_1:+79785965 Msa0047110:CDS
TGCCGCAATCACAGTTGGAC+CGG 0.524372 1_1:-79785728 None:intergenic
GAACATGAGTCTTAGAGAAA+GGG 0.530157 1_1:+79785130 Msa0047110:exon
GTCTGATGCTGGTCTTGGAA+TGG 0.532632 1_1:+79785510 Msa0047110:CDS
ATGGCTGTTAGGTTCTTGAC+CGG 0.534223 1_1:+79785709 Msa0047110:CDS
TAGCCAGAAGAAGATGGACT+TGG 0.535792 1_1:+79785190 Msa0047110:CDS
TATTAACAAATAAAGGGGAA+TGG 0.537959 1_1:-79786386 None:intergenic
GAGGTTGCCGCAATCACAGT+TGG 0.546063 1_1:-79785733 None:intergenic
GACCGGTCCAACTGTGATTG+CGG 0.556573 1_1:+79785726 Msa0047110:CDS
CTACCAAGATGACCATGTAC+AGG 0.574684 1_1:-79785016 None:intergenic
GCAAATCAATTATGATGTTG+TGG 0.575994 1_1:+79786179 Msa0047110:three_prime_UTR
TCATCTTGGTAGTACAAGAA+AGG 0.579337 1_1:+79785027 Msa0047110:five_prime_UTR
AAGTCCTATAAGACTTGAGT+AGG 0.579378 1_1:-79785318 None:intergenic
CAAATTATTAACAAATAAAG+GGG 0.580350 1_1:-79786391 None:intergenic
TCAATAGCAATTGGTATCCG+TGG 0.585503 1_1:+79785754 Msa0047110:CDS
AGCATCAGACAGTATTGAGA+TGG 0.585685 1_1:-79785497 None:intergenic
CAGTGCTGAGTATATTTGGA+TGG 0.585744 1_1:-79785964 None:intergenic
CAACCTAAGCTGATTGCATG+TGG 0.587393 1_1:+79785664 Msa0047110:CDS
GTATTCTTTGGCAAACACAA+AGG 0.589188 1_1:-79785936 None:intergenic
ATATTGAATTCTATTAGAGA+AGG 0.604979 1_1:+79786254 Msa0047110:three_prime_UTR
AGATTGATCATCTGGAAATG+TGG 0.610600 1_1:-79786363 None:intergenic
CAGAAGAAGATGGACTTGGA+AGG 0.618184 1_1:+79785194 Msa0047110:CDS
AAGAAGATGGACTTGGAAGG+AGG 0.619267 1_1:+79785197 Msa0047110:CDS
GATTGATCATCTGGAAATGT+GGG 0.623047 1_1:-79786362 None:intergenic
TTGCAGGCTGCACTTCCCCA+AGG 0.623512 1_1:+79785905 Msa0047110:intron
ATCCAAATATACTCAGCACT+GGG 0.630722 1_1:+79785966 Msa0047110:CDS
ATAAGTACTTACACTGAACA+TGG 0.642188 1_1:-79785533 None:intergenic
CTTGTCATGACACTTGCTGG+TGG 0.653465 1_1:-79785248 None:intergenic
CAACATGTAACAGAACTCCA+CGG 0.711215 1_1:-79785771 None:intergenic
ACAAAGGGAACGATACCTTG+GGG 0.759468 1_1:-79785920 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTATTAACAAATAAA+GGG - chr1_1:79786395-79786414 None:intergenic 10.0%
!! ACAAATTATTAACAAATAAA+GGG - chr1_1:79786395-79786414 None:intergenic 10.0%
!!! TAATAGATTGAAGATTTTTT+TGG - chr1_1:79785388-79785407 None:intergenic 15.0%
!!! TTTATTATGAATTTTTATGC+AGG + chr1_1:79785625-79785644 Msa0047110:intron 15.0%
!! ATAAACAACTAATTAGAATA+AGG - chr1_1:79785860-79785879 None:intergenic 15.0%
!!! AATGTTTAATTTTAATTTGC+AGG + chr1_1:79785889-79785908 Msa0047110:intron 15.0%
!! CAAATTATTAACAAATAAAG+GGG - chr1_1:79786394-79786413 None:intergenic 15.0%
!! GACAAATTATTAACAAATAA+AGG - chr1_1:79786396-79786415 None:intergenic 15.0%
!!! ATTTGTTAATAATTTGTCAA+TGG + chr1_1:79786398-79786417 Msa0047110:three_prime_UTR 15.0%
!!! TAATAGATTGAAGATTTTTT+TGG - chr1_1:79785388-79785407 None:intergenic 15.0%
!!! TTTATTATGAATTTTTATGC+AGG + chr1_1:79785625-79785644 Msa0047110:intron 15.0%
!! ATAAACAACTAATTAGAATA+AGG - chr1_1:79785860-79785879 None:intergenic 15.0%
!!! AATGTTTAATTTTAATTTGC+AGG + chr1_1:79785889-79785908 Msa0047110:intron 15.0%
!! CAAATTATTAACAAATAAAG+GGG - chr1_1:79786394-79786413 None:intergenic 15.0%
!! GACAAATTATTAACAAATAA+AGG - chr1_1:79786396-79786415 None:intergenic 15.0%
!!! ATTTGTTAATAATTTGTCAA+TGG + chr1_1:79786398-79786417 Msa0047110:three_prime_UTR 15.0%
!!! ATATTCTCCTAAGAAAATTT+TGG + chr1_1:79785570-79785589 Msa0047110:intron 20.0%
!!! AATTAAGCCAAAATTTTCTT+AGG - chr1_1:79785580-79785599 None:intergenic 20.0%
!! TGAAATACTAAAACTGAATT+TGG + chr1_1:79786063-79786082 Msa0047110:intron 20.0%
!! ATATTGAATTCTATTAGAGA+AGG + chr1_1:79786254-79786273 Msa0047110:three_prime_UTR 20.0%
!!! ATTTTGATTCAAATGAAAGT+TGG + chr1_1:79786328-79786347 Msa0047110:three_prime_UTR 20.0%
!!! TTTTGATTCAAATGAAAGTT+GGG + chr1_1:79786329-79786348 Msa0047110:three_prime_UTR 20.0%
!!! TGGAAAAATCTTTTGATTAT+AGG + chr1_1:79786418-79786437 Msa0047110:three_prime_UTR 20.0%
!!! AAAATCTTTTGATTATAGGT+AGG + chr1_1:79786422-79786441 Msa0047110:three_prime_UTR 20.0%
!!! ATATTCTCCTAAGAAAATTT+TGG + chr1_1:79785570-79785589 Msa0047110:intron 20.0%
!!! AATTAAGCCAAAATTTTCTT+AGG - chr1_1:79785580-79785599 None:intergenic 20.0%
!! TGAAATACTAAAACTGAATT+TGG + chr1_1:79786063-79786082 Msa0047110:intron 20.0%
!! ATATTGAATTCTATTAGAGA+AGG + chr1_1:79786254-79786273 Msa0047110:three_prime_UTR 20.0%
!!! ATTTTGATTCAAATGAAAGT+TGG + chr1_1:79786328-79786347 Msa0047110:three_prime_UTR 20.0%
!!! TTTTGATTCAAATGAAAGTT+GGG + chr1_1:79786329-79786348 Msa0047110:three_prime_UTR 20.0%
!!! TGGAAAAATCTTTTGATTAT+AGG + chr1_1:79786418-79786437 Msa0047110:three_prime_UTR 20.0%
!!! AAAATCTTTTGATTATAGGT+AGG + chr1_1:79786422-79786441 Msa0047110:three_prime_UTR 20.0%
!!! TTGAAGATTTTTTTGGAGAT+TGG - chr1_1:79785381-79785400 None:intergenic 25.0%
! TCTTAGGAGAATATAATGTT+TGG - chr1_1:79785564-79785583 None:intergenic 25.0%
!!! ACATAGTAGAGTATTGTTAT+GGG - chr1_1:79786131-79786150 None:intergenic 25.0%
! TATTAACAAATAAAGGGGAA+TGG - chr1_1:79786389-79786408 None:intergenic 25.0%
!!! TTGAAGATTTTTTTGGAGAT+TGG - chr1_1:79785381-79785400 None:intergenic 25.0%
! TCTTAGGAGAATATAATGTT+TGG - chr1_1:79785564-79785583 None:intergenic 25.0%
!!! ACATAGTAGAGTATTGTTAT+GGG - chr1_1:79786131-79786150 None:intergenic 25.0%
! TATTAACAAATAAAGGGGAA+TGG - chr1_1:79786389-79786408 None:intergenic 25.0%
! ATCTTCTTCTGGCTAATATA+TGG - chr1_1:79785185-79785204 None:intergenic 30.0%
ATATATTAGCCAGAAGAAGA+TGG + chr1_1:79785184-79785203 Msa0047110:CDS 30.0%
ATAAGACTTGAGTAGGTATT+AGG - chr1_1:79785314-79785333 None:intergenic 30.0%
! AATACCTACTCAAGTCTTAT+AGG + chr1_1:79785314-79785333 Msa0047110:CDS 30.0%
TTTGGTCTCTTGTATCATTT+AGG + chr1_1:79785342-79785361 Msa0047110:CDS 30.0%
GAAATGCCATCTATTGTAAA+AGG + chr1_1:79785472-79785491 Msa0047110:CDS 30.0%
! ATGGAACCTTTTACAATAGA+TGG - chr1_1:79785481-79785500 None:intergenic 30.0%
ATAAGTACTTACACTGAACA+TGG - chr1_1:79785536-79785555 None:intergenic 30.0%
TATTCTTTGGCAAACACAAA+GGG - chr1_1:79785938-79785957 None:intergenic 30.0%
AGAAAATGCAAGTGATTATG+CGG + chr1_1:79786034-79786053 Msa0047110:intron 30.0%
!! CACATAGTAGAGTATTGTTA+TGG - chr1_1:79786132-79786151 None:intergenic 30.0%
GCAAATCAATTATGATGTTG+TGG + chr1_1:79786179-79786198 Msa0047110:three_prime_UTR 30.0%
! ATCTTCTTCTGGCTAATATA+TGG - chr1_1:79785185-79785204 None:intergenic 30.0%
ATATATTAGCCAGAAGAAGA+TGG + chr1_1:79785184-79785203 Msa0047110:CDS 30.0%
ATAAGACTTGAGTAGGTATT+AGG - chr1_1:79785314-79785333 None:intergenic 30.0%
! AATACCTACTCAAGTCTTAT+AGG + chr1_1:79785314-79785333 Msa0047110:CDS 30.0%
TTTGGTCTCTTGTATCATTT+AGG + chr1_1:79785342-79785361 Msa0047110:CDS 30.0%
GAAATGCCATCTATTGTAAA+AGG + chr1_1:79785472-79785491 Msa0047110:CDS 30.0%
! ATGGAACCTTTTACAATAGA+TGG - chr1_1:79785481-79785500 None:intergenic 30.0%
ATAAGTACTTACACTGAACA+TGG - chr1_1:79785536-79785555 None:intergenic 30.0%
TATTCTTTGGCAAACACAAA+GGG - chr1_1:79785938-79785957 None:intergenic 30.0%
AGAAAATGCAAGTGATTATG+CGG + chr1_1:79786034-79786053 Msa0047110:intron 30.0%
!! CACATAGTAGAGTATTGTTA+TGG - chr1_1:79786132-79786151 None:intergenic 30.0%
GCAAATCAATTATGATGTTG+TGG + chr1_1:79786179-79786198 Msa0047110:three_prime_UTR 30.0%
GATTAATGCTTTCCTGTACA+TGG + chr1_1:79785004-79785023 Msa0047110:five_prime_UTR 35.0%
! TCATCTTGGTAGTACAAGAA+AGG + chr1_1:79785027-79785046 Msa0047110:five_prime_UTR 35.0%
AGAACATGAGTCTTAGAGAA+AGG + chr1_1:79785129-79785148 Msa0047110:exon 35.0%
GAACATGAGTCTTAGAGAAA+GGG + chr1_1:79785130-79785149 Msa0047110:exon 35.0%
AGAAAGGGATGTTGAAATTG+AGG + chr1_1:79785145-79785164 Msa0047110:CDS 35.0%
GACAAGACTTATCCTTATCA+TGG + chr1_1:79785265-79785284 Msa0047110:CDS 35.0%
GACTTATCCTTATCATGGTT+TGG + chr1_1:79785270-79785289 Msa0047110:CDS 35.0%
! GTTTTCTCCAAACCATGATA+AGG - chr1_1:79785280-79785299 None:intergenic 35.0%
AAGTCCTATAAGACTTGAGT+AGG - chr1_1:79785321-79785340 None:intergenic 35.0%
! CAAGTCTTATAGGACTTGTT+TGG + chr1_1:79785324-79785343 Msa0047110:CDS 35.0%
CAGTTAAGGATTCATGATCA+AGG - chr1_1:79785420-79785439 None:intergenic 35.0%
ATGCACATCATTAGCAGTTA+AGG - chr1_1:79785434-79785453 None:intergenic 35.0%
! TTTTTATGCAGGTCTGTTCA+TGG + chr1_1:79785636-79785655 Msa0047110:intron 35.0%
GTTACATGTTGCAATTGTTC+AGG + chr1_1:79785783-79785802 Msa0047110:CDS 35.0%
GTATTCTTTGGCAAACACAA+AGG - chr1_1:79785939-79785958 None:intergenic 35.0%
TGGATGGAGATTGTATTCTT+TGG - chr1_1:79785951-79785970 None:intergenic 35.0%
ATCCAAATATACTCAGCACT+GGG + chr1_1:79785966-79785985 Msa0047110:CDS 35.0%
ATACTCTACTATGTGCTTCT+TGG + chr1_1:79786137-79786156 Msa0047110:CDS 35.0%
TCTTGGAGTATAGTCTATCT+TGG + chr1_1:79786154-79786173 Msa0047110:exon 35.0%
ATTATGATGTTGTGGCTTCA+AGG + chr1_1:79786187-79786206 Msa0047110:three_prime_UTR 35.0%
TTATGATGTTGTGGCTTCAA+GGG + chr1_1:79786188-79786207 Msa0047110:three_prime_UTR 35.0%
GGCTCATTCAAACAAATGAA+TGG + chr1_1:79786209-79786228 Msa0047110:three_prime_UTR 35.0%
GATTGATCATCTGGAAATGT+GGG - chr1_1:79786365-79786384 None:intergenic 35.0%
AGATTGATCATCTGGAAATG+TGG - chr1_1:79786366-79786385 None:intergenic 35.0%
GATTAATGCTTTCCTGTACA+TGG + chr1_1:79785004-79785023 Msa0047110:five_prime_UTR 35.0%
! TCATCTTGGTAGTACAAGAA+AGG + chr1_1:79785027-79785046 Msa0047110:five_prime_UTR 35.0%
AGAACATGAGTCTTAGAGAA+AGG + chr1_1:79785129-79785148 Msa0047110:exon 35.0%
GAACATGAGTCTTAGAGAAA+GGG + chr1_1:79785130-79785149 Msa0047110:exon 35.0%
AGAAAGGGATGTTGAAATTG+AGG + chr1_1:79785145-79785164 Msa0047110:CDS 35.0%
GACAAGACTTATCCTTATCA+TGG + chr1_1:79785265-79785284 Msa0047110:CDS 35.0%
GACTTATCCTTATCATGGTT+TGG + chr1_1:79785270-79785289 Msa0047110:CDS 35.0%
! GTTTTCTCCAAACCATGATA+AGG - chr1_1:79785280-79785299 None:intergenic 35.0%
AAGTCCTATAAGACTTGAGT+AGG - chr1_1:79785321-79785340 None:intergenic 35.0%
! CAAGTCTTATAGGACTTGTT+TGG + chr1_1:79785324-79785343 Msa0047110:CDS 35.0%
CAGTTAAGGATTCATGATCA+AGG - chr1_1:79785420-79785439 None:intergenic 35.0%
ATGCACATCATTAGCAGTTA+AGG - chr1_1:79785434-79785453 None:intergenic 35.0%
! TTTTTATGCAGGTCTGTTCA+TGG + chr1_1:79785636-79785655 Msa0047110:intron 35.0%
GTTACATGTTGCAATTGTTC+AGG + chr1_1:79785783-79785802 Msa0047110:CDS 35.0%
GTATTCTTTGGCAAACACAA+AGG - chr1_1:79785939-79785958 None:intergenic 35.0%
TGGATGGAGATTGTATTCTT+TGG - chr1_1:79785951-79785970 None:intergenic 35.0%
ATCCAAATATACTCAGCACT+GGG + chr1_1:79785966-79785985 Msa0047110:CDS 35.0%
ATACTCTACTATGTGCTTCT+TGG + chr1_1:79786137-79786156 Msa0047110:CDS 35.0%
TCTTGGAGTATAGTCTATCT+TGG + chr1_1:79786154-79786173 Msa0047110:exon 35.0%
ATTATGATGTTGTGGCTTCA+AGG + chr1_1:79786187-79786206 Msa0047110:three_prime_UTR 35.0%
TTATGATGTTGTGGCTTCAA+GGG + chr1_1:79786188-79786207 Msa0047110:three_prime_UTR 35.0%
GGCTCATTCAAACAAATGAA+TGG + chr1_1:79786209-79786228 Msa0047110:three_prime_UTR 35.0%
GATTGATCATCTGGAAATGT+GGG - chr1_1:79786365-79786384 None:intergenic 35.0%
AGATTGATCATCTGGAAATG+TGG - chr1_1:79786366-79786385 None:intergenic 35.0%
TTTCCTGTACATGGTCATCT+TGG + chr1_1:79785013-79785032 Msa0047110:five_prime_UTR 40.0%
! AGCATCAGACAGTATTGAGA+TGG - chr1_1:79785500-79785519 None:intergenic 40.0%
ATCTCAATACTGTCTGATGC+TGG + chr1_1:79785499-79785518 Msa0047110:CDS 40.0%
TTTCCACATGCAATCAGCTT+AGG - chr1_1:79785670-79785689 None:intergenic 40.0%
! ACGAGTTGCAACGTTTTCTA+TGG + chr1_1:79785690-79785709 Msa0047110:CDS 40.0%
! CAACGTTTTCTATGGCTGTT+AGG + chr1_1:79785698-79785717 Msa0047110:CDS 40.0%
! ACGGATACCAATTGCTATTG+AGG - chr1_1:79785755-79785774 None:intergenic 40.0%
TCAATAGCAATTGGTATCCG+TGG + chr1_1:79785754-79785773 Msa0047110:CDS 40.0%
CAACATGTAACAGAACTCCA+CGG - chr1_1:79785774-79785793 None:intergenic 40.0%
! CAGTGCTGAGTATATTTGGA+TGG - chr1_1:79785967-79785986 None:intergenic 40.0%
CATCCAAATATACTCAGCAC+TGG + chr1_1:79785965-79785984 Msa0047110:CDS 40.0%
TTTCCTGTACATGGTCATCT+TGG + chr1_1:79785013-79785032 Msa0047110:five_prime_UTR 40.0%
! AGCATCAGACAGTATTGAGA+TGG - chr1_1:79785500-79785519 None:intergenic 40.0%
ATCTCAATACTGTCTGATGC+TGG + chr1_1:79785499-79785518 Msa0047110:CDS 40.0%
TTTCCACATGCAATCAGCTT+AGG - chr1_1:79785670-79785689 None:intergenic 40.0%
! ACGAGTTGCAACGTTTTCTA+TGG + chr1_1:79785690-79785709 Msa0047110:CDS 40.0%
! CAACGTTTTCTATGGCTGTT+AGG + chr1_1:79785698-79785717 Msa0047110:CDS 40.0%
! ACGGATACCAATTGCTATTG+AGG - chr1_1:79785755-79785774 None:intergenic 40.0%
TCAATAGCAATTGGTATCCG+TGG + chr1_1:79785754-79785773 Msa0047110:CDS 40.0%
CAACATGTAACAGAACTCCA+CGG - chr1_1:79785774-79785793 None:intergenic 40.0%
! CAGTGCTGAGTATATTTGGA+TGG - chr1_1:79785967-79785986 None:intergenic 40.0%
CATCCAAATATACTCAGCAC+TGG + chr1_1:79785965-79785984 Msa0047110:CDS 40.0%
CTACCAAGATGACCATGTAC+AGG - chr1_1:79785019-79785038 None:intergenic 45.0%
! TAGCCAGAAGAAGATGGACT+TGG + chr1_1:79785190-79785209 Msa0047110:CDS 45.0%
CTTCCAAGTCCATCTTCTTC+TGG - chr1_1:79785196-79785215 None:intergenic 45.0%
! CAGAAGAAGATGGACTTGGA+AGG + chr1_1:79785194-79785213 Msa0047110:CDS 45.0%
! AAGAAGATGGACTTGGAAGG+AGG + chr1_1:79785197-79785216 Msa0047110:CDS 45.0%
! AGTCTTGTCATGACACTTGC+TGG - chr1_1:79785254-79785273 None:intergenic 45.0%
CTAATGATGTGCATGCATGC+AGG + chr1_1:79785440-79785459 Msa0047110:intron 45.0%
! ATACTGTCTGATGCTGGTCT+TGG + chr1_1:79785505-79785524 Msa0047110:CDS 45.0%
CAACCTAAGCTGATTGCATG+TGG + chr1_1:79785664-79785683 Msa0047110:CDS 45.0%
ATGGCTGTTAGGTTCTTGAC+CGG + chr1_1:79785709-79785728 Msa0047110:CDS 45.0%
ACAAAGGGAACGATACCTTG+GGG - chr1_1:79785923-79785942 None:intergenic 45.0%
CACAAAGGGAACGATACCTT+GGG - chr1_1:79785924-79785943 None:intergenic 45.0%
ACACAAAGGGAACGATACCT+TGG - chr1_1:79785925-79785944 None:intergenic 45.0%
! CACCCAGTGCTGAGTATATT+TGG - chr1_1:79785971-79785990 None:intergenic 45.0%
AATTTGGCATGTGTGCTGCA+GGG + chr1_1:79786079-79786098 Msa0047110:intron 45.0%
GTGTGCTGCAGGGTTATATT+TGG + chr1_1:79786089-79786108 Msa0047110:intron 45.0%
GGGAATGGAGATTGATCATC+TGG - chr1_1:79786374-79786393 None:intergenic 45.0%
CTACCAAGATGACCATGTAC+AGG - chr1_1:79785019-79785038 None:intergenic 45.0%
! TAGCCAGAAGAAGATGGACT+TGG + chr1_1:79785190-79785209 Msa0047110:CDS 45.0%
CTTCCAAGTCCATCTTCTTC+TGG - chr1_1:79785196-79785215 None:intergenic 45.0%
! CAGAAGAAGATGGACTTGGA+AGG + chr1_1:79785194-79785213 Msa0047110:CDS 45.0%
! AAGAAGATGGACTTGGAAGG+AGG + chr1_1:79785197-79785216 Msa0047110:CDS 45.0%
! AGTCTTGTCATGACACTTGC+TGG - chr1_1:79785254-79785273 None:intergenic 45.0%
CTAATGATGTGCATGCATGC+AGG + chr1_1:79785440-79785459 Msa0047110:intron 45.0%
! ATACTGTCTGATGCTGGTCT+TGG + chr1_1:79785505-79785524 Msa0047110:CDS 45.0%
CAACCTAAGCTGATTGCATG+TGG + chr1_1:79785664-79785683 Msa0047110:CDS 45.0%
ATGGCTGTTAGGTTCTTGAC+CGG + chr1_1:79785709-79785728 Msa0047110:CDS 45.0%
ACAAAGGGAACGATACCTTG+GGG - chr1_1:79785923-79785942 None:intergenic 45.0%
CACAAAGGGAACGATACCTT+GGG - chr1_1:79785924-79785943 None:intergenic 45.0%
ACACAAAGGGAACGATACCT+TGG - chr1_1:79785925-79785944 None:intergenic 45.0%
! CACCCAGTGCTGAGTATATT+TGG - chr1_1:79785971-79785990 None:intergenic 45.0%
AATTTGGCATGTGTGCTGCA+GGG + chr1_1:79786079-79786098 Msa0047110:intron 45.0%
GTGTGCTGCAGGGTTATATT+TGG + chr1_1:79786089-79786108 Msa0047110:intron 45.0%
GGGAATGGAGATTGATCATC+TGG - chr1_1:79786374-79786393 None:intergenic 45.0%
! AAGATGGACTTGGAAGGAGG+AGG + chr1_1:79785200-79785219 Msa0047110:CDS 50.0%
! AGATGGACTTGGAAGGAGGA+GGG + chr1_1:79785201-79785220 Msa0047110:CDS 50.0%
! CTTGTCATGACACTTGCTGG+TGG - chr1_1:79785251-79785270 None:intergenic 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG + chr1_1:79785510-79785529 Msa0047110:CDS 50.0%
GCGGCAACCTCAATAGCAAT+TGG + chr1_1:79785745-79785764 Msa0047110:CDS 50.0%
GAATTTGGCATGTGTGCTGC+AGG + chr1_1:79786078-79786097 Msa0047110:intron 50.0%
! AAGATGGACTTGGAAGGAGG+AGG + chr1_1:79785200-79785219 Msa0047110:CDS 50.0%
! AGATGGACTTGGAAGGAGGA+GGG + chr1_1:79785201-79785220 Msa0047110:CDS 50.0%
! CTTGTCATGACACTTGCTGG+TGG - chr1_1:79785251-79785270 None:intergenic 50.0%
!! GTCTGATGCTGGTCTTGGAA+TGG + chr1_1:79785510-79785529 Msa0047110:CDS 50.0%
GCGGCAACCTCAATAGCAAT+TGG + chr1_1:79785745-79785764 Msa0047110:CDS 50.0%
GAATTTGGCATGTGTGCTGC+AGG + chr1_1:79786078-79786097 Msa0047110:intron 50.0%
! GATGGACTTGGAAGGAGGAG+GGG + chr1_1:79785202-79785221 Msa0047110:CDS 55.0%
GACCGGTCCAACTGTGATTG+CGG + chr1_1:79785726-79785745 Msa0047110:CDS 55.0%
TGCCGCAATCACAGTTGGAC+CGG - chr1_1:79785731-79785750 None:intergenic 55.0%
GAGGTTGCCGCAATCACAGT+TGG - chr1_1:79785736-79785755 None:intergenic 55.0%
! GATGGACTTGGAAGGAGGAG+GGG + chr1_1:79785202-79785221 Msa0047110:CDS 55.0%
GACCGGTCCAACTGTGATTG+CGG + chr1_1:79785726-79785745 Msa0047110:CDS 55.0%
TGCCGCAATCACAGTTGGAC+CGG - chr1_1:79785731-79785750 None:intergenic 55.0%
GAGGTTGCCGCAATCACAGT+TGG - chr1_1:79785736-79785755 None:intergenic 55.0%
TTGCAGGCTGCACTTCCCCA+AGG + chr1_1:79785905-79785924 Msa0047110:intron 60.0%
TTGCAGGCTGCACTTCCCCA+AGG + chr1_1:79785905-79785924 Msa0047110:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79784984 79786461 79784984 ID=Msa0047110;Name=Msa0047110
chr1_1 mRNA 79784984 79786461 79784984 ID=Msa0047110-mRNA-1;Parent=Msa0047110;Name=Msa0047110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=150|1|1|1|1|1|5|295|205
chr1_1 exon 79784984 79785363 79784984 ID=Msa0047110-mRNA-1:exon:27522;Parent=Msa0047110-mRNA-1
chr1_1 exon 79785462 79785547 79785462 ID=Msa0047110-mRNA-1:exon:27523;Parent=Msa0047110-mRNA-1
chr1_1 exon 79785647 79785804 79785647 ID=Msa0047110-mRNA-1:exon:27524;Parent=Msa0047110-mRNA-1
chr1_1 exon 79785911 79785987 79785911 ID=Msa0047110-mRNA-1:exon:27525;Parent=Msa0047110-mRNA-1
chr1_1 exon 79786100 79786461 79786100 ID=Msa0047110-mRNA-1:exon:27526;Parent=Msa0047110-mRNA-1
chr1_1 five_prime_UTR 79784984 79785133 79784984 ID=Msa0047110-mRNA-1:five_prime_utr;Parent=Msa0047110-mRNA-1
chr1_1 CDS 79785134 79785363 79785134 ID=Msa0047110-mRNA-1:cds;Parent=Msa0047110-mRNA-1
chr1_1 CDS 79785462 79785547 79785462 ID=Msa0047110-mRNA-1:cds;Parent=Msa0047110-mRNA-1
chr1_1 CDS 79785647 79785804 79785647 ID=Msa0047110-mRNA-1:cds;Parent=Msa0047110-mRNA-1
chr1_1 CDS 79785911 79785987 79785911 ID=Msa0047110-mRNA-1:cds;Parent=Msa0047110-mRNA-1
chr1_1 CDS 79786100 79786166 79786100 ID=Msa0047110-mRNA-1:cds;Parent=Msa0047110-mRNA-1
chr1_1 three_prime_UTR 79786167 79786461 79786167 ID=Msa0047110-mRNA-1:three_prime_utr;Parent=Msa0047110-mRNA-1
Gene Sequence

>Msa0047110

ATGAGTCTTAGAGAAAGGGATGTTGAAATTGAGGAAGCAGTAAAGTCTCCATATATTAGCCAGAAGAAGATGGACTTGGAAGGAGGAGGGGATGTAAGCAAAAATACACAGATGCCACCAGCAAGTGTCATGACAAGACTTATCCTTATCATGGTTTGGAGAAAACTCATCAGAAATCCTAATACCTACTCAAGTCTTATAGGACTTGTTTGGTCTCTTGTATCATTTAGGTTTCACATTGAAATGCCATCTATTGTAAAAGGTTCCATCTCAATACTGTCTGATGCTGGTCTTGGAATGGCCATGTTCAGTGTAAGTCTGTTCATGGCATTACAACCTAAGCTGATTGCATGTGGAAAACGAGTTGCAACGTTTTCTATGGCTGTTAGGTTCTTGACCGGTCCAACTGTGATTGCGGCAACCTCAATAGCAATTGGTATCCGTGGAGTTCTGTTACATGTTGCAATTGTTCAGGCTGCACTTCCCCAAGGTATCGTTCCCTTTGTGTTTGCCAAAGAATACAATCTCCATCCAAATATACTCAGCACTGGGGTTATATTTGGTATGTTGATTGCATTGCCCATAACAATACTCTACTATGTGCTTCTTGGAGTATAG

Protein sequence

>Msa0047110

MSLRERDVEIEEAVKSPYISQKKMDLEGGGDVSKNTQMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRFHIEMPSIVKGSISILSDAGLGMAMFSVSLFMALQPKLIACGKRVATFSMAVRFLTGPTVIAATSIAIGIRGVLLHVAIVQAALPQGIVPFVFAKEYNLHPNILSTGVIFGMLIALPITILYYVLLGV*