AlfalfaGEDB | Msa0466440

M. sativa cultivar zhongmu-4 / Msa0466440

KEGG: -
GO: -
PFAM: PF14647.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0466440	XP_003601383.2	98.207	1004	12	2	1	998	1	1004	0.0	2017

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0466440	sp\|Q6TEP1\|F91A1_DANRE	36.247	469	267	12	17	461	9	469	8.80e-83	289
Msa0466440	sp\|Q6TEP1\|F91A1_DANRE	29.938	324	164	9	563	846	470	770	5.56e-23	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0466440	G7J6Q2	98.207	1004	12	2	1	998	1	1004	0.0	2017

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0466440	0.831352	1.752195e-55	-8.615850e-47
Msa0195230	Msa0466440	0.806923	6.496829e-50	-8.615850e-47
Msa0195260	Msa0466440	0.811632	6.354439e-51	-8.615850e-47
Msa0279000	Msa0466440	0.830640	2.620945e-55	-8.615850e-47
Msa0466440	Msa0512240	0.838733	2.413302e-57	-8.615850e-47
Msa0466440	Msa0513230	0.909139	7.922038e-82	-8.615850e-47
Msa0466440	Msa0606120	0.821564	3.776034e-53	-8.615850e-47
Msa0466440	Msa0930770	0.830938	2.215030e-55	-8.615850e-47
Msa0466440	Msa1145150	0.909547	5.048140e-82	-8.615850e-47
Msa0466440	Msa1203500	0.802619	5.147788e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0466440	MtrunA17_Chr3g0119301	98.207	1004	12	2	1	998	1	1004	0.0	2017
Msa0466440	MtrunA17_Chr5g0439411	75.180	971	226	7	43	998	6	976	0.0	1472
Msa0466440	MtrunA17_Chr5g0439421	77.500	40	9	0	1	40	1	40	5.62e-15	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0466440	AT1G35220.3	71.414	1004	250	14	1	982	1	989	1437
Msa0466440	AT1G35220.1	71.414	1004	250	14	1	982	1	989	1437
Msa0466440	AT1G35220.2	71.414	1004	250	14	1	982	1	989	1437
Msa0466440	AT1G35220.5	71.518	962	237	14	43	982	27	973	1369
Msa0466440	AT1G35220.6	71.674	932	227	14	73	982	1	917	1321
Msa0466440	AT1G35220.4	70.957	909	227	14	96	982	1	894	1271
Msa0466440	AT1G35220.7	70.957	909	227	14	96	982	1	894	1271

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Find 299 sgRNAs with CRISPR-Local

Find 874 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATTACTCTTCAAT+CGG	0.498683	3_3:-67069131	None:intergenic
AAAATTTGAGGGAGAACTGC+AGG	0.542318	3_3:+67071344	Msa0466440:CDS
AAAGCAGATAGTTATGAAAG+AGG	0.508408	3_3:+67074607	Msa0466440:three_prime_UTR
AAATAGGTTGACGTGCCTGG+AGG	0.704721	3_3:-67074059	None:intergenic
AAATGCATCTGTTGCTGAAT+TGG	0.349733	3_3:+67069287	Msa0466440:CDS
AAATTTGGAGAAGTCTGCAG+AGG	0.617715	3_3:+67071590	Msa0466440:CDS
AAATTTGGGATGCTGTCGTA+AGG	0.573117	3_3:-67065635	None:intergenic
AACAAACGATCAAGGGTTGC+TGG	0.465300	3_3:-67071825	None:intergenic
AACAGAACCCATCATAAGAT+AGG	0.531008	3_3:-67069598	None:intergenic
AACCGATCCTCAGGATACAC+CGG	0.626979	3_3:-67067030	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTGATATGAATGTTGAAAA+CGG	+	chr3_3:67061951-67061970	Msa0466440:five_prime_UTR	30.0%
GATTAAAGAAGAATGTCCAT+GGG	+	chr3_3:67062352-67062371	Msa0466440:CDS	30.0%
AGAGTAGATTGAATTCTCTT+AGG	-	chr3_3:67062386-67062405	None:intergenic	30.0%
AATACTCAGCATGAAAGAAT+TGG	-	chr3_3:67062449-67062468	None:intergenic	30.0%
TCAAAATCAACTCATTGGAA+AGG	-	chr3_3:67062522-67062541	None:intergenic	30.0%
GTCGAATGTAAAGTGATATA+TGG	+	chr3_3:67062578-67062597	Msa0466440:intron	30.0%
TGAAAGCTTAGAATCAATTC+TGG	+	chr3_3:67062664-67062683	Msa0466440:intron	30.0%
AACATACACGTAGTAGAAAA+TGG	+	chr3_3:67062780-67062799	Msa0466440:intron	30.0%
GTAGAAAATGGAGAATGATA+AGG	+	chr3_3:67062792-67062811	Msa0466440:intron	30.0%
AATAGGCATAGTTCAAAATG+TGG	+	chr3_3:67062922-67062941	Msa0466440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	67061907	67074722	67061907	ID=Msa0466440;Name=Msa0466440
chr3_3	mRNA	67061907	67074722	67061907	ID=Msa0466440-mRNA-1;Parent=Msa0466440;Name=Msa0466440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=398\|0.88\|0.9\|1\|1\|1\|10\|591\|998
chr3_3	exon	67061907	67062432	67061907	ID=Msa0466440-mRNA-1:exon:15385;Parent=Msa0466440-mRNA-1
chr3_3	exon	67063543	67063660	67063543	ID=Msa0466440-mRNA-1:exon:15386;Parent=Msa0466440-mRNA-1
chr3_3	exon	67064055	67064151	67064055	ID=Msa0466440-mRNA-1:exon:15387;Parent=Msa0466440-mRNA-1
chr3_3	exon	67065630	67065736	67065630	ID=Msa0466440-mRNA-1:exon:15388;Parent=Msa0466440-mRNA-1
chr3_3	exon	67066634	67066756	67066634	ID=Msa0466440-mRNA-1:exon:15389;Parent=Msa0466440-mRNA-1
chr3_3	exon	67066904	67067057	67066904	ID=Msa0466440-mRNA-1:exon:15390;Parent=Msa0466440-mRNA-1
chr3_3	exon	67069096	67069141	67069096	ID=Msa0466440-mRNA-1:exon:15391;Parent=Msa0466440-mRNA-1
chr3_3	exon	67069254	67069627	67069254	ID=Msa0466440-mRNA-1:exon:15392;Parent=Msa0466440-mRNA-1
chr3_3	exon	67071247	67072849	67071247	ID=Msa0466440-mRNA-1:exon:15393;Parent=Msa0466440-mRNA-1
chr3_3	exon	67073885	67074722	67073885	ID=Msa0466440-mRNA-1:exon:15394;Parent=Msa0466440-mRNA-1
chr3_3	five_prime_UTR	67061907	67062304	67061907	ID=Msa0466440-mRNA-1:five_prime_utr;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67062305	67062432	67062305	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67063543	67063660	67063543	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67064055	67064151	67064055	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67065630	67065736	67065630	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67066634	67066756	67066634	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67066904	67067057	67066904	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67069096	67069141	67069096	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67069254	67069627	67069254	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67071247	67072849	67071247	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	CDS	67073885	67074131	67073885	ID=Msa0466440-mRNA-1:cds;Parent=Msa0466440-mRNA-1
chr3_3	three_prime_UTR	67074132	67074722	67074132	ID=Msa0466440-mRNA-1:three_prime_utr;Parent=Msa0466440-mRNA-1

Gene Sequence

>Msa0466440

ATGCAGCGTGCTCCAGTTACAGTTGAGGAACAATTGTTGCTAAAAGCGATTAAAGAAGAATGTCCATGGGAGAATCTTCCTAAGAGAATTCAATCTACTCTTGCTTCTAAAGAAGAATGGCATCGAAAGATAGTTGAATGCTGCATAAAGAAGAGACTTCAATGGAATAGCTGTTTTGCCCGCAAAATTTGTAAAGAAAGTGAATATTATGAAGATATGATGCGTTACTTGCGGAAGAATCTTGCTCTGTTTCCTTATCATTTGGCGGAGTATGTTTGCCGTGTAATGAGGGTGTCGCCTTTCAGATATTATTGTGATATGATTTTTGAAGTAATGAAAAACGAGCAACCTTACGACAGCATCCCAAATTTTAGTGCAGCAGATGCGTTAAGACTTACAGGAATCGGGAGAAATGAATTTATTGATATAATGAACAAGTGCAGATCTAAGAAAATCATGTGGAAACTGAACAAGTCAATTGCAAAAGAATTATTGCCAACGCAACCTGTAGATTTTCCTATTGAATCTTGGTGGGGAGTTTGTCTGGTGAACTTTACTTTGGAAGAATTTAAGAAACTCTCCGAAGAGGAAATGGCCACTATTGACAAAATATGTAAGGAGGAAGCAACTTCATTTATCCTGTTTGATCCTGATGTTGTAAAGGGTCTCTATAGACGCGGACTGATCTATTTTGATGTTCCGGTGTATCCTGAGGATCGGTTCAAAGGTTTTGTATCCAACAGGGAGCAGTCTTATGAAGATCCGATTGAAGAGTTATTGTATGCCGTGTTTGTTGTTTCGAATGAAAATGCATCTGTTGCTGAATTGGCAACAACTCTACAGGCTGACTTGTCACAATTGCAGGCTGCTGCATCATTTGTATGTCGATTGGGATGGGCAATAAAAGTCATTGATCCATCATCTATACTTCAAGATACAAGTATACCTGGGTCGCCAAGAAGTGCAATCAGCGATGAAGATGTTTCTCTTGCTGGTCATGGTTTTGACAATATCCATACCGATAATGATATTCAAGGGGATGCTTCAGTTTCAGGCAATAATGGTCCTCGTTCGGCCTATACTCGCGTTGCCTTCATAGTTGATGCCAATATAACATCCTATCTTATGATGGGTTCTGTTTCACCAGGTTTGAAATCTCATGCTGTTACGCTCTACGAAGCGGGTAAATTGGGTCATGCCAGCATTTCTGATCTTTGCAAGGATCTTAGCACTCTGGAAGGTGCAAAATTTGAGGGAGAACTGCAGGAATTTGCCAATCATGCATTTAGCCTGCGTTGTGTATTAGAATGTCTACAATCAGGCGGAGTTGCTTCTGATGTGAAAGTTGAGGAAGGATTTGATAAGATGGATATTGCTACTCCAAGCAATGATGAACCAAGCTCTCTAACGACTGAAATATCTTTGGCTGAAAAATCAGGAGACCCGGGTATTACAGAAGCTGAGACAAATAATGACGATTTATTGAGTTTAAATTTGGAGAAGTCTGCAGAGGCTTCTGTTTCCTATGAAGCTGTTCCCAGTGATGGAACCAGTTCTATTATATTGGAAGGCGATGGCAATGACGTACAAGATTCCAGTAAAGACGACAATCTCCAAAACGATGAGAAATTAATAGTTGAAGGGTCAGATGTTGGAACAGAATTGAAGAGGAAAAAGAAATATCATGTAGATATTCTCCGCTGTGAAAGCTTGGCTTCTCTTTCACCAGCAACCCTTGATCGTTTGTTTCTTCGTGACTATGATATAGTTGTGTCCATAGTGCCTCTTCCTCAATCATCAGTTCTTCCTGGACCCTCAGGTCCAGTTCATTTTGGTCCCCCTTCATATTCCTTTATGACTCCTTGGATGAAATTGGTACTATATTCGACTGTAGCTAGTGGGCCTCTATCAGTTGTTCTGATGAAAGGGCAGTGTCTGCGCTTGCTTCCTGCTCCATTGGCTGGTTGTGAGAAAGCTCTCATATGGTCTTGGGATGGTTCTACAGTAGGAGGGTTAGGAGGGAAGCTTGAAGGAAACTTAGTGAAGGGAAGTATACTTTTACATTGTTTAAACTCACTTCTTAAACATTCAGCCGTTCTGGTGCTGCCTCTCAGTAAGTTCGATCTTAATGAATCTGGAAAGTTGGTTACTATGGATATCCCTTTGCCCTTAATGAACGCTGATGGCTCAATTGTTCCTGTTGGAAAAGAATTAGGAATATGCGAAGAGGAAAGTTCAAATCTGAATTCTCTATTGACTGATTTGGCAAACAAGATGGAGCTGTGCACAGTTGGGTATATCCGCCTTCTTAGACTGTTTAATGAAAGAGCGTCTGACCAGTTTTCATCTAAAGAGAAGTATGATTGGGTTCCGTTGAGTGTTGAGTTTGGGATGCCATTATTTAGTCCAAAGTTGTGTAATAATATATGTAGAAGGGTGGTTTCATCTGAATTGCTTCAATCTGGATCATTTGATGAACACCATCGTGCAATGCAAAGCTTAAAGAAAAAAATACATGACATTTATGCAGAGTACCAAGCAACAGGTCCTGCTGCTAAGGTACTTTACCAGAAGGAGCAAGTTAAAGAATCTTCACGACAACTTATGAACTATGCTAGTGGAAGATGGAATCCACTAGTGGACCCTTCCTCTCCCATTTCAGGGACATCAAGTGAGCATCAAAGGTTAAAACTTGCAAATCGAGAACGCTGTAGAACTGAAGTTTTAAGCTTTGATGGCAGTATTCTTAGATCTTATGCCTTATCTCCTGTTTACGAAGCCGCCACAAGGCCCATTGAAGAAGGCACACAAGCAAACACGATAAAAGCTGAATCAGATGAAAATGATAGTAAAGAAGTAATTCTTCCCGGAGTAAATCTTCTTTTTGACGGTGCTGAGTTGCACCCGTTTGACATAGGTGCCTGCCTCCAGGCACGTCAACCTATTTCCTTAATAGCGGAAGCAGCAGCTGCCTCGGCATCTTTAGCAATCAAATAG

Protein sequence

>Msa0466440

MQRAPVTVEEQLLLKAIKEECPWENLPKRIQSTLASKEEWHRKIVECCIKKRLQWNSCFARKICKESEYYEDMMRYLRKNLALFPYHLAEYVCRVMRVSPFRYYCDMIFEVMKNEQPYDSIPNFSAADALRLTGIGRNEFIDIMNKCRSKKIMWKLNKSIAKELLPTQPVDFPIESWWGVCLVNFTLEEFKKLSEEEMATIDKICKEEATSFILFDPDVVKGLYRRGLIYFDVPVYPEDRFKGFVSNREQSYEDPIEELLYAVFVVSNENASVAELATTLQADLSQLQAAASFVCRLGWAIKVIDPSSILQDTSIPGSPRSAISDEDVSLAGHGFDNIHTDNDIQGDASVSGNNGPRSAYTRVAFIVDANITSYLMMGSVSPGLKSHAVTLYEAGKLGHASISDLCKDLSTLEGAKFEGELQEFANHAFSLRCVLECLQSGGVASDVKVEEGFDKMDIATPSNDEPSSLTTEISLAEKSGDPGITEAETNNDDLLSLNLEKSAEASVSYEAVPSDGTSSIILEGDGNDVQDSSKDDNLQNDEKLIVEGSDVGTELKRKKKYHVDILRCESLASLSPATLDRLFLRDYDIVVSIVPLPQSSVLPGPSGPVHFGPPSYSFMTPWMKLVLYSTVASGPLSVVLMKGQCLRLLPAPLAGCEKALIWSWDGSTVGGLGGKLEGNLVKGSILLHCLNSLLKHSAVLVLPLSKFDLNESGKLVTMDIPLPLMNADGSIVPVGKELGICEEESSNLNSLLTDLANKMELCTVGYIRLLRLFNERASDQFSSKEKYDWVPLSVEFGMPLFSPKLCNNICRRVVSSELLQSGSFDEHHRAMQSLKKKIHDIYAEYQATGPAAKVLYQKEQVKESSRQLMNYASGRWNPLVDPSSPISGTSSEHQRLKLANRERCRTEVLSFDGSILRSYALSPVYEAATRPIEEGTQANTIKAESDENDSKEVILPGVNLLFDGAELHPFDIGACLQARQPISLIAEAAAASASLAIK*