AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195230 MtrunA17_Chr2g0292051 96.811 439 12 1 1 437 1 439 0.0 858
Msa0195230 MtrunA17_Chr1g0199801 45.788 463 196 12 9 417 1 462 4.44e-133 391
Msa0195230 MtrunA17_Chr1g0185551 36.697 436 191 10 22 431 1 377 1.28e-77 246
Msa0195230 MtrunA17_Chr7g0259871 38.875 391 190 11 22 394 1 360 6.13e-75 239
Msa0195230 MtrunA17_Chr5g0402451 30.548 347 187 15 67 365 10 350 1.76e-27 113
Msa0195230 MtrunA17_Chr5g0402441 30.857 350 179 17 67 365 16 353 1.50e-26 110
Msa0195230 MtrunA17_Chr1g0153781 26.603 421 238 16 52 420 6 407 1.14e-23 102
Msa0195230 MtrunA17_Chr3g0133691 28.065 367 210 16 84 401 36 397 6.73e-23 100
Msa0195230 MtrunA17_Chr8g0335591 27.913 369 226 17 67 400 32 395 1.32e-22 99.4
Msa0195230 MtrunA17_Chr8g0335581 25.455 385 245 13 67 415 21 399 3.17e-22 98.2
Msa0195230 MtrunA17_Chr3g0133681 27.100 369 211 17 84 401 36 397 1.93e-21 95.9
Msa0195230 MtrunA17_Chr8g0335611 28.649 370 224 15 67 400 32 397 5.05e-21 94.7
Msa0195230 MtrunA17_Chr8g0335621 28.378 370 225 15 67 400 63 428 1.76e-20 93.6
Msa0195230 MtrunA17_Chr8g0335631 27.507 349 212 13 87 400 51 393 5.54e-20 91.7
Msa0195230 MtrunA17_Chr8g0335651 28.070 342 208 14 87 400 52 383 2.16e-19 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195230 AT3G54950.1 48.630 438 196 7 2 412 32 467 2.21e-135 398
Msa0195230 AT2G39220.1 47.511 442 183 7 19 412 40 480 1.35e-130 386
Msa0195230 AT4G29800.1 42.333 463 201 8 15 412 43 504 4.59e-113 342
Msa0195230 AT4G29800.2 42.241 464 201 9 15 412 43 505 3.58e-111 337
Msa0195230 AT3G63200.1 42.494 393 171 10 22 394 3 360 9.41e-87 270
Msa0195230 AT4G37060.1 30.130 385 217 18 67 403 19 399 2.83e-28 115
Msa0195230 AT2G26560.1 29.815 379 218 15 67 400 19 394 1.38e-25 108
Msa0195230 AT4G37070.2 28.385 384 220 17 67 401 19 396 5.56e-24 103
Msa0195230 AT4G37060.2 27.952 415 218 19 67 403 19 430 2.24e-23 102
Msa0195230 AT4G37070.3 28.649 370 209 17 67 387 19 382 5.63e-23 100
Msa0195230 AT4G37070.1 28.649 370 209 17 67 387 19 382 5.63e-23 100
Msa0195230 AT4G37050.1 28.032 371 209 16 87 402 54 421 6.50e-23 100
Msa0195230 AT5G43590.1 27.778 288 168 10 87 336 33 318 2.09e-20 93.2
Msa0195230 AT5G43590.2 27.778 288 168 10 87 336 100 385 4.62e-20 92.8
Msa0195230 AT4G37070.4 27.297 370 203 17 67 387 19 371 7.02e-19 88.2

Find 124 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACGAAATCTTCTCCATTT+TGG 0.144885 2_1:-12010819 Msa0195230:CDS
AACTTAATGTCTTGTGGTTT+TGG 0.200873 2_1:-12009150 Msa0195230:three_prime_UTR
GTGTATTGAAACATTGATTA+TGG 0.206328 2_1:-12008867 Msa0195230:three_prime_UTR
GTTGAGTCAGTCTTATTTAA+AGG 0.208877 2_1:-12009471 Msa0195230:CDS
ATCGGATTTGGTGGCGGTTT+CGG 0.267788 2_1:-12009517 Msa0195230:CDS
TTGGAAAACAAATTCTTATT+CGG 0.286942 2_1:-12010800 Msa0195230:CDS
TGTATGTTGGTTGTTGAAAA+TGG 0.288958 2_1:+12010997 None:intergenic
GATTTCTTCGACGCCGTTGC+TGG 0.312723 2_1:-12010584 Msa0195230:CDS
GGTAGGTTGTAGTAATATTA+AGG 0.321641 2_1:+12009070 None:intergenic
TTAGACAAATTGAAATTGTT+TGG 0.328034 2_1:-12009423 Msa0195230:CDS
GTTTGGTGGAGAGTTGATTA+AGG 0.342805 2_1:-12009406 Msa0195230:CDS
GCAGAGAATTCTGACTTTCC+CGG 0.367032 2_1:+12010712 None:intergenic
GTCCTAGGAGATGAAGTTCT+AGG 0.368900 2_1:+12009321 None:intergenic
TCAGGTTTCGTGAGAATTGC+CGG 0.370289 2_1:-12010005 Msa0195230:CDS
AAGAAAAGAGGAAGATTAGT+AGG 0.373541 2_1:-12009236 Msa0195230:three_prime_UTR
AACAGAATTTCCCGACGATC+GGG 0.375905 2_1:-12010455 Msa0195230:CDS
GGGGAAAACCACATCGGATT+TGG 0.391408 2_1:-12009529 Msa0195230:CDS
GAGGATGCCGTCGGTGTAAC+CGG 0.403495 2_1:+12010679 None:intergenic
AATATGAGAGTTACTGTTAC+CGG 0.409853 2_1:+12010610 None:intergenic
CCAACTGTTGTGTTGAAGAA+TGG 0.412565 2_1:-12009354 Msa0195230:CDS
TTCGACGCCGTTGCTGGCTC+CGG 0.416327 2_1:-12010578 Msa0195230:CDS
TAACGGTGTTTCTGATTTGT+TGG 0.422061 2_1:-12010078 Msa0195230:CDS
AAGTTCAAGTTGTTGTTCAT+TGG 0.424195 2_1:+12010881 None:intergenic
TCTTTCTGAGGCAGGATTCA+AGG 0.424873 2_1:+12010636 None:intergenic
GATTTGTTGGTGCTTTCTCT+TGG 0.427963 2_1:-12010065 Msa0195230:CDS
CAAGCTGTATCAATGGCATT+TGG 0.428031 2_1:-12009624 Msa0195230:CDS
TTTCTCACCGGAAACAAAAT+CGG 0.433911 2_1:-12010417 Msa0195230:CDS
ACCGGATTTCTTTCTGAGGC+AGG 0.435141 2_1:+12010628 None:intergenic
TATGTGCGGATTCAATCAAA+TGG 0.437366 2_1:-12009582 Msa0195230:CDS
CGGTGAAGGAGCTTCCGATA+TGG 0.438606 2_1:-12009985 Msa0195230:intron
CCCGACGATCGGGGATTCTC+CGG 0.439862 2_1:-12010445 Msa0195230:CDS
ACGAAGATCTTAGCCGTTGA+TGG 0.448292 2_1:-12010176 Msa0195230:CDS
GTGATAGTGATTTGTTCGTA+TGG 0.453685 2_1:-12008982 Msa0195230:three_prime_UTR
GAAACCTGAGGGAGACTTAA+CGG 0.454179 2_1:+12010019 None:intergenic
CCGGAGAATCCCCGATCGTC+GGG 0.457645 2_1:+12010445 None:intergenic
GAAAGAGAGAATTTGTATGT+TGG 0.458611 2_1:+12010984 None:intergenic
TCGTAGCAGGGAATTAAAAT+CGG 0.459582 2_1:+12010341 None:intergenic
GCCGTTGCTGGCTCCGGTGT+CGG 0.460782 2_1:-12010572 Msa0195230:CDS
TTCGTATGGGTATTGTCAAA+AGG 0.460883 2_1:-12008968 Msa0195230:three_prime_UTR
GTCAGAATTCTCTGCATTGA+CGG 0.462797 2_1:-12010704 Msa0195230:CDS
GCGCGTGACGAGATCGTAGC+AGG 0.470309 2_1:+12010328 None:intergenic
TCCTAGGAGATGAAGTTCTA+GGG 0.478439 2_1:+12009322 None:intergenic
AAGGTAAACAAAGGGAAGAC+GGG 0.479023 2_1:-12009549 Msa0195230:CDS
GGCGGTTTCGGAGGAGATGT+TGG 0.485077 2_1:-12009505 Msa0195230:CDS
GACAAATTGAAATTGTTTGG+TGG 0.485720 2_1:-12009420 Msa0195230:CDS
TCGATGGACTTCAATTCAAT+AGG 0.487410 2_1:+12010206 None:intergenic
ATGTGCGGATTCAATCAAAT+GGG 0.488399 2_1:-12009581 Msa0195230:CDS
TTCAATTCAATAGGAGCCGC+TGG 0.490050 2_1:+12010215 None:intergenic
AAATGAAATAATTATAATGT+AGG 0.494177 2_1:+12009049 None:intergenic
TTCTCTTGGTAACGGAGAGT+TGG 0.496512 2_1:-12010051 Msa0195230:CDS
GAAATAATTATAATGTAGGT+AGG 0.499493 2_1:+12009053 None:intergenic
GGTTGTAGTAATATTAAGGA+TGG 0.505680 2_1:+12009074 None:intergenic
TGATAGTGATTTGTTCGTAT+GGG 0.508009 2_1:-12008981 Msa0195230:three_prime_UTR
TTTACCACGGGTGAAAAGTA+AGG 0.511204 2_1:+12010535 None:intergenic
TTGGTGCTTTCTCTTGGTAA+CGG 0.511918 2_1:-12010059 Msa0195230:CDS
AACCACATCGGATTTGGTGG+CGG 0.512460 2_1:-12009523 Msa0195230:CDS
TAACAGAATTTCCCGACGAT+CGG 0.515375 2_1:-12010456 Msa0195230:CDS
GAAAACCACATCGGATTTGG+TGG 0.517533 2_1:-12009526 Msa0195230:CDS
GTAGTAGCTGATGAAGTCCT+AGG 0.521279 2_1:+12009306 None:intergenic
GGTTGATCAAGCTGTATCAA+TGG 0.525148 2_1:-12009631 Msa0195230:CDS
CCCCTAGAACTTCATCTCCT+AGG 0.526050 2_1:-12009323 Msa0195230:CDS
AGTTGATTAAGGAAGAAGAG+AGG 0.528571 2_1:-12009395 Msa0195230:CDS
TTCGTGAGAATTGCCGGTGA+AGG 0.529684 2_1:-12009999 Msa0195230:CDS
ATCAAATGGGGTGATGGCTA+AGG 0.530306 2_1:-12009568 Msa0195230:CDS
AACGCCGTTAAGTCTCCCTC+AGG 0.530840 2_1:-12010023 Msa0195230:CDS
AGTCAGTCTTATTTAAAGGA+AGG 0.532895 2_1:-12009467 Msa0195230:CDS
TCCTGCCTCAGAAAGAAATC+CGG 0.534121 2_1:-12010629 Msa0195230:CDS
CCATTCTTCAACACAACAGT+TGG 0.536757 2_1:+12009354 None:intergenic
CATATCGGAAGCTCCTTCAC+CGG 0.540361 2_1:+12009986 None:intergenic
GCCGGAGAATCCCCGATCGT+CGG 0.540416 2_1:+12010444 None:intergenic
GGCGAGGACTCCACCGACAC+CGG 0.540476 2_1:+12010559 None:intergenic
ATTCTCTGCATTGACGGCGC+CGG 0.540611 2_1:-12010698 Msa0195230:CDS
GATCTTCGTCTTCCCATCGA+TGG 0.541076 2_1:+12010190 None:intergenic
TAAGGTAAACAAAGGGAAGA+CGG 0.544495 2_1:-12009550 Msa0195230:CDS
GAGTTTATCAACTTCGAAGT+TGG 0.546260 2_1:+12010844 None:intergenic
TCAGAAACACCGTTACAAAA+CGG 0.547389 2_1:+12010086 None:intergenic
GGATTCAACACTGCACAGCT+CGG 0.562583 2_1:+12009095 None:intergenic
GGAGATGAAGTTCTAGGGGA+GGG 0.565558 2_1:+12009327 None:intergenic
GATTTCGAGAGCGTCGGCGC+GGG 0.567460 2_1:+12010289 None:intergenic
TGAGTAACAGCAGTAGCCGT+TGG 0.567616 2_1:+12010134 None:intergenic
GATTCAATCAAATGGGGTGA+TGG 0.569656 2_1:-12009574 Msa0195230:CDS
GTTGCTGGCTCCGGTGTCGG+TGG 0.572413 2_1:-12010569 Msa0195230:CDS
ACCGACACCGGAGCCAGCAA+CGG 0.573642 2_1:+12010571 None:intergenic
CAGAAACTTCAAAGCTTCAT+CGG 0.575680 2_1:+12010490 None:intergenic
ATTGAATTGAAGTCCATCGA+TGG 0.577788 2_1:-12010203 Msa0195230:CDS
AGCCGCTGGATCAGCTGACG+TGG 0.581310 2_1:+12010229 None:intergenic
GACGGCGCCGGTTACACCGA+CGG 0.582223 2_1:-12010686 Msa0195230:CDS
GGATTTGGTGGCGGTTTCGG+AGG 0.583638 2_1:-12009514 Msa0195230:CDS
AAGGTGAGAGAGTGATTTCG+CGG 0.586435 2_1:+12010655 None:intergenic
CATCGCAACACCTCCATCAA+CGG 0.587463 2_1:+12010163 None:intergenic
AGGAGATGAAGTTCTAGGGG+AGG 0.591108 2_1:+12009326 None:intergenic
TTGAATTGAAGTCCATCGAT+GGG 0.595371 2_1:-12010202 Msa0195230:CDS
AGGTAATCCGTCTTTACCAC+GGG 0.595561 2_1:+12010523 None:intergenic
TGCCACGTCAGCTGATCCAG+CGG 0.596623 2_1:-12010231 Msa0195230:CDS
ACAGAATTTCCCGACGATCG+GGG 0.599858 2_1:-12010454 Msa0195230:CDS
ATCGTCGGGAAATTCTGTTA+CGG 0.601025 2_1:+12010459 None:intergenic
CTTTCTTAATCGATCTCAAG+CGG 0.617258 2_1:+12009119 None:intergenic
CCTAGGAGATGAAGTTCTAG+GGG 0.628375 2_1:+12009323 None:intergenic
CGCGTGACGAGATCGTAGCA+GGG 0.629024 2_1:+12010329 None:intergenic
AAGATCTTAGCCGTTGATGG+AGG 0.638110 2_1:-12010173 Msa0195230:CDS
TTTCGCGGCGAGGATGCCGT+CGG 0.641184 2_1:+12010670 None:intergenic
GCAATTCTCACGAAACCTGA+GGG 0.641382 2_1:+12010008 None:intergenic
GTAGATTGAACAATTATGTG+CGG 0.642262 2_1:-12009596 Msa0195230:CDS
GGCAATTCTCACGAAACCTG+AGG 0.645971 2_1:+12010007 None:intergenic
GAGGTAATCCGTCTTTACCA+CGG 0.646558 2_1:+12010522 None:intergenic
ACCGTCGATTTCGAGAGCGT+CGG 0.652715 2_1:+12010283 None:intergenic
TGTTACCGGATTTCTTTCTG+AGG 0.653122 2_1:+12010624 None:intergenic
GTGATGGCTAAGGTAAACAA+AGG 0.654646 2_1:-12009558 Msa0195230:CDS
CGATTTCGAGAGCGTCGGCG+CGG 0.655501 2_1:+12010288 None:intergenic
TGATGGCTAAGGTAAACAAA+GGG 0.662128 2_1:-12009557 Msa0195230:CDS
ATTTAAAGGAAGGAAGATCG+TGG 0.667169 2_1:-12009457 Msa0195230:CDS
TCGGCGCGGGAGAAAACGAA+CGG 0.671166 2_1:+12010302 None:intergenic
GCCGACGCTCTCGAAATCGA+CGG 0.676469 2_1:-12010284 Msa0195230:CDS
GGGTGAAAAGTAAGGCGGCG+AGG 0.686118 2_1:+12010543 None:intergenic
GCTTCATCGGCAGTGAACAG+AGG 0.690278 2_1:+12010503 None:intergenic
TTTCCGGTGAGAAAACTCGC+CGG 0.691056 2_1:+12010426 None:intergenic
AACCGCCACCAAATCCGATG+TGG 0.694040 2_1:+12009521 None:intergenic
TGTTGCGATGAACAATCCAA+CGG 0.695987 2_1:-12010150 Msa0195230:CDS
ACCACGGGTGAAAAGTAAGG+CGG 0.698481 2_1:+12010538 None:intergenic
AGGTAAACAAAGGGAAGACG+GGG 0.704588 2_1:-12009548 Msa0195230:CDS
TGTGCGGATTCAATCAAATG+GGG 0.705308 2_1:-12009580 Msa0195230:CDS
GAGAGAGTGATTTCGCGGCG+AGG 0.707647 2_1:+12010660 None:intergenic
GAGAATTCTGACTTTCCCGG+CGG 0.726321 2_1:+12010715 None:intergenic
GAAGACGGGGAAAACCACAT+CGG 0.743605 2_1:-12009535 Msa0195230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAATAATTATAATGT+AGG + chr2_1:12010808-12010827 None:intergenic 10.0%
!! AAATGAAATAATTATAATGT+AGG + chr2_1:12010808-12010827 None:intergenic 10.0%
!! AAAATAATTCGAAATTGAAT+CGG - chr2_1:12010016-12010035 Msa0195230:CDS 15.0%
!! ATGAATGAATATTATAATGT+AGG - chr2_1:12010202-12010221 Msa0195230:CDS 15.0%
!!! TAAAAATTAGATTTTGTTGT+GGG - chr2_1:12010650-12010669 Msa0195230:CDS 15.0%
!!! TTTTTATCTTTGTTTAGTTT+TGG - chr2_1:12010829-12010848 Msa0195230:CDS 15.0%
!! AAAATAATTCGAAATTGAAT+CGG - chr2_1:12010016-12010035 Msa0195230:CDS 15.0%
!! ATGAATGAATATTATAATGT+AGG - chr2_1:12010202-12010221 Msa0195230:CDS 15.0%
!!! TAAAAATTAGATTTTGTTGT+GGG - chr2_1:12010650-12010669 Msa0195230:CDS 15.0%
!!! TTTTTATCTTTGTTTAGTTT+TGG - chr2_1:12010829-12010848 Msa0195230:CDS 15.0%
!!! TAAGAATTTGTTTTCCAAAA+TGG + chr2_1:12009052-12009071 None:intergenic 20.0%
!! TTGGAAAACAAATTCTTATT+CGG - chr2_1:12009054-12009073 Msa0195230:three_prime_UTR 20.0%
!!! GAATTTTTTTCTTACCATAT+CGG + chr2_1:12009886-12009905 None:intergenic 20.0%
!! TTAGACAAATTGAAATTGTT+TGG - chr2_1:12010431-12010450 Msa0195230:CDS 20.0%
!!! CTAAAAATTAGATTTTGTTG+TGG - chr2_1:12010649-12010668 Msa0195230:CDS 20.0%
!! GAAATAATTATAATGTAGGT+AGG + chr2_1:12010804-12010823 None:intergenic 20.0%
!!! TAAGAATTTGTTTTCCAAAA+TGG + chr2_1:12009052-12009071 None:intergenic 20.0%
!! TTGGAAAACAAATTCTTATT+CGG - chr2_1:12009054-12009073 Msa0195230:three_prime_UTR 20.0%
!!! GAATTTTTTTCTTACCATAT+CGG + chr2_1:12009886-12009905 None:intergenic 20.0%
!! TTAGACAAATTGAAATTGTT+TGG - chr2_1:12010431-12010450 Msa0195230:CDS 20.0%
!!! CTAAAAATTAGATTTTGTTG+TGG - chr2_1:12010649-12010668 Msa0195230:CDS 20.0%
!! GAAATAATTATAATGTAGGT+AGG + chr2_1:12010804-12010823 None:intergenic 20.0%
! AACTCAAATTGCAGAAAAAA+TGG - chr2_1:12008933-12008952 Msa0195230:three_prime_UTR 25.0%
!!! AGAATGTGTTTGTTTTTGTT+AGG + chr2_1:12010078-12010097 None:intergenic 25.0%
! ATTTGTAGTGAATAATGAGT+AGG - chr2_1:12010126-12010145 Msa0195230:CDS 25.0%
! TAATGAGTAGGTCTAATTAT+TGG - chr2_1:12010138-12010157 Msa0195230:CDS 25.0%
! AAGAAGACAAAAAAGAAAAG+AGG - chr2_1:12010606-12010625 Msa0195230:CDS 25.0%
!!! TTTTGAAACTTAATGTCTTG+TGG - chr2_1:12010698-12010717 Msa0195230:CDS 25.0%
!! GTGTATTGAAACATTGATTA+TGG - chr2_1:12010987-12011006 Msa0195230:five_prime_UTR 25.0%
! AACTCAAATTGCAGAAAAAA+TGG - chr2_1:12008933-12008952 Msa0195230:three_prime_UTR 25.0%
!!! AGAATGTGTTTGTTTTTGTT+AGG + chr2_1:12010078-12010097 None:intergenic 25.0%
! ATTTGTAGTGAATAATGAGT+AGG - chr2_1:12010126-12010145 Msa0195230:CDS 25.0%
! TAATGAGTAGGTCTAATTAT+TGG - chr2_1:12010138-12010157 Msa0195230:CDS 25.0%
! AAGAAGACAAAAAAGAAAAG+AGG - chr2_1:12010606-12010625 Msa0195230:CDS 25.0%
!!! TTTTGAAACTTAATGTCTTG+TGG - chr2_1:12010698-12010717 Msa0195230:CDS 25.0%
!! GTGTATTGAAACATTGATTA+TGG - chr2_1:12010987-12011006 Msa0195230:five_prime_UTR 25.0%
! TGTATGTTGGTTGTTGAAAA+TGG + chr2_1:12008860-12008879 None:intergenic 30.0%
GAAAGAGAGAATTTGTATGT+TGG + chr2_1:12008873-12008892 None:intergenic 30.0%
!!! TTTTTCTGCAATTTGAGTTG+AGG + chr2_1:12008932-12008951 None:intergenic 30.0%
TCAAATTGCAGAAAAAATGG+CGG - chr2_1:12008936-12008955 Msa0195230:three_prime_UTR 30.0%
!! AAGTTCAAGTTGTTGTTCAT+TGG + chr2_1:12008976-12008995 None:intergenic 30.0%
! ATACGAAATCTTCTCCATTT+TGG - chr2_1:12009035-12009054 Msa0195230:three_prime_UTR 30.0%
AATATGAGAGTTACTGTTAC+CGG + chr2_1:12009247-12009266 None:intergenic 30.0%
! AAGCTTTTCCGAAAAACATT+CGG - chr2_1:12009462-12009481 Msa0195230:CDS 30.0%
ATAATTCGAAATTGAATCGG+TGG - chr2_1:12010019-12010038 Msa0195230:CDS 30.0%
GTAGATTGAACAATTATGTG+CGG - chr2_1:12010258-12010277 Msa0195230:CDS 30.0%
!! GTTGAGTCAGTCTTATTTAA+AGG - chr2_1:12010383-12010402 Msa0195230:CDS 30.0%
!! AGTCAGTCTTATTTAAAGGA+AGG - chr2_1:12010387-12010406 Msa0195230:CDS 30.0%
GACAAATTGAAATTGTTTGG+TGG - chr2_1:12010434-12010453 Msa0195230:CDS 30.0%
AAGAAAAGAGGAAGATTAGT+AGG - chr2_1:12010618-12010637 Msa0195230:CDS 30.0%
! AACTTAATGTCTTGTGGTTT+TGG - chr2_1:12010704-12010723 Msa0195230:CDS 30.0%
! ACTTAATGTCTTGTGGTTTT+GGG - chr2_1:12010705-12010724 Msa0195230:CDS 30.0%
GGTTGTAGTAATATTAAGGA+TGG + chr2_1:12010783-12010802 None:intergenic 30.0%
GGTAGGTTGTAGTAATATTA+AGG + chr2_1:12010787-12010806 None:intergenic 30.0%
!! TGATAGTGATTTGTTCGTAT+GGG - chr2_1:12010873-12010892 Msa0195230:CDS 30.0%
! CAAAAGGTGAATTTTGTACA+AGG - chr2_1:12010902-12010921 Msa0195230:CDS 30.0%
! TGTATGTTGGTTGTTGAAAA+TGG + chr2_1:12008860-12008879 None:intergenic 30.0%
GAAAGAGAGAATTTGTATGT+TGG + chr2_1:12008873-12008892 None:intergenic 30.0%
!!! TTTTTCTGCAATTTGAGTTG+AGG + chr2_1:12008932-12008951 None:intergenic 30.0%
TCAAATTGCAGAAAAAATGG+CGG - chr2_1:12008936-12008955 Msa0195230:three_prime_UTR 30.0%
!! AAGTTCAAGTTGTTGTTCAT+TGG + chr2_1:12008976-12008995 None:intergenic 30.0%
! ATACGAAATCTTCTCCATTT+TGG - chr2_1:12009035-12009054 Msa0195230:three_prime_UTR 30.0%
AATATGAGAGTTACTGTTAC+CGG + chr2_1:12009247-12009266 None:intergenic 30.0%
! AAGCTTTTCCGAAAAACATT+CGG - chr2_1:12009462-12009481 Msa0195230:CDS 30.0%
ATAATTCGAAATTGAATCGG+TGG - chr2_1:12010019-12010038 Msa0195230:CDS 30.0%
GTAGATTGAACAATTATGTG+CGG - chr2_1:12010258-12010277 Msa0195230:CDS 30.0%
!! GTTGAGTCAGTCTTATTTAA+AGG - chr2_1:12010383-12010402 Msa0195230:CDS 30.0%
!! AGTCAGTCTTATTTAAAGGA+AGG - chr2_1:12010387-12010406 Msa0195230:CDS 30.0%
GACAAATTGAAATTGTTTGG+TGG - chr2_1:12010434-12010453 Msa0195230:CDS 30.0%
AAGAAAAGAGGAAGATTAGT+AGG - chr2_1:12010618-12010637 Msa0195230:CDS 30.0%
! AACTTAATGTCTTGTGGTTT+TGG - chr2_1:12010704-12010723 Msa0195230:CDS 30.0%
! ACTTAATGTCTTGTGGTTTT+GGG - chr2_1:12010705-12010724 Msa0195230:CDS 30.0%
GGTTGTAGTAATATTAAGGA+TGG + chr2_1:12010783-12010802 None:intergenic 30.0%
GGTAGGTTGTAGTAATATTA+AGG + chr2_1:12010787-12010806 None:intergenic 30.0%
!! TGATAGTGATTTGTTCGTAT+GGG - chr2_1:12010873-12010892 Msa0195230:CDS 30.0%
! CAAAAGGTGAATTTTGTACA+AGG - chr2_1:12010902-12010921 Msa0195230:CDS 30.0%
GAGTTTATCAACTTCGAAGT+TGG + chr2_1:12009013-12009032 None:intergenic 35.0%
! AAGCGAATTCTTCGCATTTT+CGG + chr2_1:12009091-12009110 None:intergenic 35.0%
CAGAAACTTCAAAGCTTCAT+CGG + chr2_1:12009367-12009386 None:intergenic 35.0%
TTTCTCACCGGAAACAAAAT+CGG - chr2_1:12009437-12009456 Msa0195230:CDS 35.0%
! TGCATTCTCCGAATGTTTTT+CGG + chr2_1:12009473-12009492 None:intergenic 35.0%
TCGTAGCAGGGAATTAAAAT+CGG + chr2_1:12009516-12009535 None:intergenic 35.0%
! TCGATGGACTTCAATTCAAT+AGG + chr2_1:12009651-12009670 None:intergenic 35.0%
ATTGAATTGAAGTCCATCGA+TGG - chr2_1:12009651-12009670 Msa0195230:intron 35.0%
TTGAATTGAAGTCCATCGAT+GGG - chr2_1:12009652-12009671 Msa0195230:intron 35.0%
! CATGAGTTTCCGTTTTGTAA+CGG - chr2_1:12009759-12009778 Msa0195230:intron 35.0%
TCAGAAACACCGTTACAAAA+CGG + chr2_1:12009771-12009790 None:intergenic 35.0%
! TAACGGTGTTTCTGATTTGT+TGG - chr2_1:12009776-12009795 Msa0195230:intron 35.0%
TATGTGCGGATTCAATCAAA+TGG - chr2_1:12010272-12010291 Msa0195230:CDS 35.0%
ATGTGCGGATTCAATCAAAT+GGG - chr2_1:12010273-12010292 Msa0195230:CDS 35.0%
TGATGGCTAAGGTAAACAAA+GGG - chr2_1:12010297-12010316 Msa0195230:CDS 35.0%
TAAGGTAAACAAAGGGAAGA+CGG - chr2_1:12010304-12010323 Msa0195230:CDS 35.0%
ATTTAAAGGAAGGAAGATCG+TGG - chr2_1:12010397-12010416 Msa0195230:CDS 35.0%
AGTTGATTAAGGAAGAAGAG+AGG - chr2_1:12010459-12010478 Msa0195230:CDS 35.0%
CTTTCTTAATCGATCTCAAG+CGG + chr2_1:12010738-12010757 None:intergenic 35.0%
!! GTGATAGTGATTTGTTCGTA+TGG - chr2_1:12010872-12010891 Msa0195230:CDS 35.0%
! TTCGTATGGGTATTGTCAAA+AGG - chr2_1:12010886-12010905 Msa0195230:CDS 35.0%
GAGTTTATCAACTTCGAAGT+TGG + chr2_1:12009013-12009032 None:intergenic 35.0%
! AAGCGAATTCTTCGCATTTT+CGG + chr2_1:12009091-12009110 None:intergenic 35.0%
CAGAAACTTCAAAGCTTCAT+CGG + chr2_1:12009367-12009386 None:intergenic 35.0%
TTTCTCACCGGAAACAAAAT+CGG - chr2_1:12009437-12009456 Msa0195230:CDS 35.0%
! TGCATTCTCCGAATGTTTTT+CGG + chr2_1:12009473-12009492 None:intergenic 35.0%
TCGTAGCAGGGAATTAAAAT+CGG + chr2_1:12009516-12009535 None:intergenic 35.0%
! TCGATGGACTTCAATTCAAT+AGG + chr2_1:12009651-12009670 None:intergenic 35.0%
ATTGAATTGAAGTCCATCGA+TGG - chr2_1:12009651-12009670 Msa0195230:intron 35.0%
TTGAATTGAAGTCCATCGAT+GGG - chr2_1:12009652-12009671 Msa0195230:intron 35.0%
! CATGAGTTTCCGTTTTGTAA+CGG - chr2_1:12009759-12009778 Msa0195230:intron 35.0%
TCAGAAACACCGTTACAAAA+CGG + chr2_1:12009771-12009790 None:intergenic 35.0%
! TAACGGTGTTTCTGATTTGT+TGG - chr2_1:12009776-12009795 Msa0195230:intron 35.0%
TATGTGCGGATTCAATCAAA+TGG - chr2_1:12010272-12010291 Msa0195230:CDS 35.0%
ATGTGCGGATTCAATCAAAT+GGG - chr2_1:12010273-12010292 Msa0195230:CDS 35.0%
TGATGGCTAAGGTAAACAAA+GGG - chr2_1:12010297-12010316 Msa0195230:CDS 35.0%
TAAGGTAAACAAAGGGAAGA+CGG - chr2_1:12010304-12010323 Msa0195230:CDS 35.0%
ATTTAAAGGAAGGAAGATCG+TGG - chr2_1:12010397-12010416 Msa0195230:CDS 35.0%
AGTTGATTAAGGAAGAAGAG+AGG - chr2_1:12010459-12010478 Msa0195230:CDS 35.0%
CTTTCTTAATCGATCTCAAG+CGG + chr2_1:12010738-12010757 None:intergenic 35.0%
!! GTGATAGTGATTTGTTCGTA+TGG - chr2_1:12010872-12010891 Msa0195230:CDS 35.0%
! TTCGTATGGGTATTGTCAAA+AGG - chr2_1:12010886-12010905 Msa0195230:CDS 35.0%
!! ATTCTTCGCATTTTCGGTGT+CGG + chr2_1:12009085-12009104 None:intergenic 40.0%
GTCAGAATTCTCTGCATTGA+CGG - chr2_1:12009150-12009169 Msa0195230:three_prime_UTR 40.0%
TGTTACCGGATTTCTTTCTG+AGG + chr2_1:12009233-12009252 None:intergenic 40.0%
TTTACCACGGGTGAAAAGTA+AGG + chr2_1:12009322-12009341 None:intergenic 40.0%
ATCGTCGGGAAATTCTGTTA+CGG + chr2_1:12009398-12009417 None:intergenic 40.0%
TAACAGAATTTCCCGACGAT+CGG - chr2_1:12009398-12009417 Msa0195230:CDS 40.0%
!! AGCTTCTCCGATTTTGTTTC+CGG + chr2_1:12009447-12009466 None:intergenic 40.0%
TGTTGCGATGAACAATCCAA+CGG - chr2_1:12009704-12009723 Msa0195230:intron 40.0%
!! GATTTGTTGGTGCTTTCTCT+TGG - chr2_1:12009789-12009808 Msa0195230:intron 40.0%
! TTGGTGCTTTCTCTTGGTAA+CGG - chr2_1:12009795-12009814 Msa0195230:intron 40.0%
TGAATCGGTGGTTACTAGTT+AGG - chr2_1:12010031-12010050 Msa0195230:CDS 40.0%
GGTTGATCAAGCTGTATCAA+TGG - chr2_1:12010223-12010242 Msa0195230:CDS 40.0%
CAAGCTGTATCAATGGCATT+TGG - chr2_1:12010230-12010249 Msa0195230:CDS 40.0%
TGTGCGGATTCAATCAAATG+GGG - chr2_1:12010274-12010293 Msa0195230:CDS 40.0%
GATTCAATCAAATGGGGTGA+TGG - chr2_1:12010280-12010299 Msa0195230:CDS 40.0%
GTGATGGCTAAGGTAAACAA+AGG - chr2_1:12010296-12010315 Msa0195230:CDS 40.0%
AAGGTAAACAAAGGGAAGAC+GGG - chr2_1:12010305-12010324 Msa0195230:CDS 40.0%
! GTTTGGTGGAGAGTTGATTA+AGG - chr2_1:12010448-12010467 Msa0195230:CDS 40.0%
CCATTCTTCAACACAACAGT+TGG + chr2_1:12010503-12010522 None:intergenic 40.0%
CCAACTGTTGTGTTGAAGAA+TGG - chr2_1:12010500-12010519 Msa0195230:CDS 40.0%
TCCTAGGAGATGAAGTTCTA+GGG + chr2_1:12010535-12010554 None:intergenic 40.0%
!! ATTCTTCGCATTTTCGGTGT+CGG + chr2_1:12009085-12009104 None:intergenic 40.0%
GTCAGAATTCTCTGCATTGA+CGG - chr2_1:12009150-12009169 Msa0195230:three_prime_UTR 40.0%
TGTTACCGGATTTCTTTCTG+AGG + chr2_1:12009233-12009252 None:intergenic 40.0%
TTTACCACGGGTGAAAAGTA+AGG + chr2_1:12009322-12009341 None:intergenic 40.0%
ATCGTCGGGAAATTCTGTTA+CGG + chr2_1:12009398-12009417 None:intergenic 40.0%
TAACAGAATTTCCCGACGAT+CGG - chr2_1:12009398-12009417 Msa0195230:CDS 40.0%
!! AGCTTCTCCGATTTTGTTTC+CGG + chr2_1:12009447-12009466 None:intergenic 40.0%
TGTTGCGATGAACAATCCAA+CGG - chr2_1:12009704-12009723 Msa0195230:intron 40.0%
!! GATTTGTTGGTGCTTTCTCT+TGG - chr2_1:12009789-12009808 Msa0195230:intron 40.0%
! TTGGTGCTTTCTCTTGGTAA+CGG - chr2_1:12009795-12009814 Msa0195230:intron 40.0%
TGAATCGGTGGTTACTAGTT+AGG - chr2_1:12010031-12010050 Msa0195230:CDS 40.0%
GGTTGATCAAGCTGTATCAA+TGG - chr2_1:12010223-12010242 Msa0195230:CDS 40.0%
CAAGCTGTATCAATGGCATT+TGG - chr2_1:12010230-12010249 Msa0195230:CDS 40.0%
TGTGCGGATTCAATCAAATG+GGG - chr2_1:12010274-12010293 Msa0195230:CDS 40.0%
GATTCAATCAAATGGGGTGA+TGG - chr2_1:12010280-12010299 Msa0195230:CDS 40.0%
GTGATGGCTAAGGTAAACAA+AGG - chr2_1:12010296-12010315 Msa0195230:CDS 40.0%
AAGGTAAACAAAGGGAAGAC+GGG - chr2_1:12010305-12010324 Msa0195230:CDS 40.0%
! GTTTGGTGGAGAGTTGATTA+AGG - chr2_1:12010448-12010467 Msa0195230:CDS 40.0%
CCATTCTTCAACACAACAGT+TGG + chr2_1:12010503-12010522 None:intergenic 40.0%
CCAACTGTTGTGTTGAAGAA+TGG - chr2_1:12010500-12010519 Msa0195230:CDS 40.0%
TCCTAGGAGATGAAGTTCTA+GGG + chr2_1:12010535-12010554 None:intergenic 40.0%
GCAGAGAATTCTGACTTTCC+CGG + chr2_1:12009145-12009164 None:intergenic 45.0%
AAGGTGAGAGAGTGATTTCG+CGG + chr2_1:12009202-12009221 None:intergenic 45.0%
!! TCTTTCTGAGGCAGGATTCA+AGG + chr2_1:12009221-12009240 None:intergenic 45.0%
TCCTGCCTCAGAAAGAAATC+CGG - chr2_1:12009225-12009244 Msa0195230:three_prime_UTR 45.0%
! CTTTTCACCCGTGGTAAAGA+CGG - chr2_1:12009324-12009343 Msa0195230:CDS 45.0%
AGGTAATCCGTCTTTACCAC+GGG + chr2_1:12009334-12009353 None:intergenic 45.0%
GAGGTAATCCGTCTTTACCA+CGG + chr2_1:12009335-12009354 None:intergenic 45.0%
AACAGAATTTCCCGACGATC+GGG - chr2_1:12009399-12009418 Msa0195230:CDS 45.0%
TTCAATTCAATAGGAGCCGC+TGG + chr2_1:12009642-12009661 None:intergenic 45.0%
ACGAAGATCTTAGCCGTTGA+TGG - chr2_1:12009678-12009697 Msa0195230:intron 45.0%
! AAGATCTTAGCCGTTGATGG+AGG - chr2_1:12009681-12009700 Msa0195230:intron 45.0%
!! TTCTCTTGGTAACGGAGAGT+TGG - chr2_1:12009803-12009822 Msa0195230:intron 45.0%
GAAACCTGAGGGAGACTTAA+CGG + chr2_1:12009838-12009857 None:intergenic 45.0%
GCAATTCTCACGAAACCTGA+GGG + chr2_1:12009849-12009868 None:intergenic 45.0%
TCAGGTTTCGTGAGAATTGC+CGG - chr2_1:12009849-12009868 Msa0195230:intron 45.0%
! ATCAAATGGGGTGATGGCTA+AGG - chr2_1:12010286-12010305 Msa0195230:CDS 45.0%
AGGTAAACAAAGGGAAGACG+GGG - chr2_1:12010306-12010325 Msa0195230:CDS 45.0%
GAAAACCACATCGGATTTGG+TGG - chr2_1:12010328-12010347 Msa0195230:CDS 45.0%
! CCTAGGAGATGAAGTTCTAG+GGG + chr2_1:12010534-12010553 None:intergenic 45.0%
GTCCTAGGAGATGAAGTTCT+AGG + chr2_1:12010536-12010555 None:intergenic 45.0%
GTAGTAGCTGATGAAGTCCT+AGG + chr2_1:12010551-12010570 None:intergenic 45.0%
GCAGAGAATTCTGACTTTCC+CGG + chr2_1:12009145-12009164 None:intergenic 45.0%
AAGGTGAGAGAGTGATTTCG+CGG + chr2_1:12009202-12009221 None:intergenic 45.0%
!! TCTTTCTGAGGCAGGATTCA+AGG + chr2_1:12009221-12009240 None:intergenic 45.0%
TCCTGCCTCAGAAAGAAATC+CGG - chr2_1:12009225-12009244 Msa0195230:three_prime_UTR 45.0%
! CTTTTCACCCGTGGTAAAGA+CGG - chr2_1:12009324-12009343 Msa0195230:CDS 45.0%
AGGTAATCCGTCTTTACCAC+GGG + chr2_1:12009334-12009353 None:intergenic 45.0%
GAGGTAATCCGTCTTTACCA+CGG + chr2_1:12009335-12009354 None:intergenic 45.0%
AACAGAATTTCCCGACGATC+GGG - chr2_1:12009399-12009418 Msa0195230:CDS 45.0%
TTCAATTCAATAGGAGCCGC+TGG + chr2_1:12009642-12009661 None:intergenic 45.0%
ACGAAGATCTTAGCCGTTGA+TGG - chr2_1:12009678-12009697 Msa0195230:intron 45.0%
! AAGATCTTAGCCGTTGATGG+AGG - chr2_1:12009681-12009700 Msa0195230:intron 45.0%
!! TTCTCTTGGTAACGGAGAGT+TGG - chr2_1:12009803-12009822 Msa0195230:intron 45.0%
GAAACCTGAGGGAGACTTAA+CGG + chr2_1:12009838-12009857 None:intergenic 45.0%
GCAATTCTCACGAAACCTGA+GGG + chr2_1:12009849-12009868 None:intergenic 45.0%
TCAGGTTTCGTGAGAATTGC+CGG - chr2_1:12009849-12009868 Msa0195230:intron 45.0%
! ATCAAATGGGGTGATGGCTA+AGG - chr2_1:12010286-12010305 Msa0195230:CDS 45.0%
AGGTAAACAAAGGGAAGACG+GGG - chr2_1:12010306-12010325 Msa0195230:CDS 45.0%
GAAAACCACATCGGATTTGG+TGG - chr2_1:12010328-12010347 Msa0195230:CDS 45.0%
! CCTAGGAGATGAAGTTCTAG+GGG + chr2_1:12010534-12010553 None:intergenic 45.0%
GTCCTAGGAGATGAAGTTCT+AGG + chr2_1:12010536-12010555 None:intergenic 45.0%
GTAGTAGCTGATGAAGTCCT+AGG + chr2_1:12010551-12010570 None:intergenic 45.0%
AAACAAGCCAAAAACGCCGC+CGG - chr2_1:12009123-12009142 Msa0195230:three_prime_UTR 50.0%
GAGAATTCTGACTTTCCCGG+CGG + chr2_1:12009142-12009161 None:intergenic 50.0%
!! ACCGGATTTCTTTCTGAGGC+AGG + chr2_1:12009229-12009248 None:intergenic 50.0%
ACCACGGGTGAAAAGTAAGG+CGG + chr2_1:12009319-12009338 None:intergenic 50.0%
ACAGAATTTCCCGACGATCG+GGG - chr2_1:12009400-12009419 Msa0195230:CDS 50.0%
TTTCCGGTGAGAAAACTCGC+CGG + chr2_1:12009431-12009450 None:intergenic 50.0%
GATCTTCGTCTTCCCATCGA+TGG + chr2_1:12009667-12009686 None:intergenic 50.0%
CATCGCAACACCTCCATCAA+CGG + chr2_1:12009694-12009713 None:intergenic 50.0%
TGAGTAACAGCAGTAGCCGT+TGG + chr2_1:12009723-12009742 None:intergenic 50.0%
GGCAATTCTCACGAAACCTG+AGG + chr2_1:12009850-12009869 None:intergenic 50.0%
TTCGTGAGAATTGCCGGTGA+AGG - chr2_1:12009855-12009874 Msa0195230:intron 50.0%
CATATCGGAAGCTCCTTCAC+CGG + chr2_1:12009871-12009890 None:intergenic 50.0%
GAAGACGGGGAAAACCACAT+CGG - chr2_1:12010319-12010338 Msa0195230:CDS 50.0%
GGGGAAAACCACATCGGATT+TGG - chr2_1:12010325-12010344 Msa0195230:CDS 50.0%
!! AACCACATCGGATTTGGTGG+CGG - chr2_1:12010331-12010350 Msa0195230:CDS 50.0%
!! ATCGGATTTGGTGGCGGTTT+CGG - chr2_1:12010337-12010356 Msa0195230:CDS 50.0%
!! GGAGATGAAGTTCTAGGGGA+GGG + chr2_1:12010530-12010549 None:intergenic 50.0%
!! AGGAGATGAAGTTCTAGGGG+AGG + chr2_1:12010531-12010550 None:intergenic 50.0%
CCCCTAGAACTTCATCTCCT+AGG - chr2_1:12010531-12010550 Msa0195230:CDS 50.0%
GGATTCAACACTGCACAGCT+CGG + chr2_1:12010762-12010781 None:intergenic 50.0%
AAACAAGCCAAAAACGCCGC+CGG - chr2_1:12009123-12009142 Msa0195230:three_prime_UTR 50.0%
GAGAATTCTGACTTTCCCGG+CGG + chr2_1:12009142-12009161 None:intergenic 50.0%
!! ACCGGATTTCTTTCTGAGGC+AGG + chr2_1:12009229-12009248 None:intergenic 50.0%
ACCACGGGTGAAAAGTAAGG+CGG + chr2_1:12009319-12009338 None:intergenic 50.0%
ACAGAATTTCCCGACGATCG+GGG - chr2_1:12009400-12009419 Msa0195230:CDS 50.0%
TTTCCGGTGAGAAAACTCGC+CGG + chr2_1:12009431-12009450 None:intergenic 50.0%
GATCTTCGTCTTCCCATCGA+TGG + chr2_1:12009667-12009686 None:intergenic 50.0%
CATCGCAACACCTCCATCAA+CGG + chr2_1:12009694-12009713 None:intergenic 50.0%
TGAGTAACAGCAGTAGCCGT+TGG + chr2_1:12009723-12009742 None:intergenic 50.0%
GGCAATTCTCACGAAACCTG+AGG + chr2_1:12009850-12009869 None:intergenic 50.0%
TTCGTGAGAATTGCCGGTGA+AGG - chr2_1:12009855-12009874 Msa0195230:intron 50.0%
CATATCGGAAGCTCCTTCAC+CGG + chr2_1:12009871-12009890 None:intergenic 50.0%
GAAGACGGGGAAAACCACAT+CGG - chr2_1:12010319-12010338 Msa0195230:CDS 50.0%
GGGGAAAACCACATCGGATT+TGG - chr2_1:12010325-12010344 Msa0195230:CDS 50.0%
!! AACCACATCGGATTTGGTGG+CGG - chr2_1:12010331-12010350 Msa0195230:CDS 50.0%
!! ATCGGATTTGGTGGCGGTTT+CGG - chr2_1:12010337-12010356 Msa0195230:CDS 50.0%
!! GGAGATGAAGTTCTAGGGGA+GGG + chr2_1:12010530-12010549 None:intergenic 50.0%
!! AGGAGATGAAGTTCTAGGGG+AGG + chr2_1:12010531-12010550 None:intergenic 50.0%
CCCCTAGAACTTCATCTCCT+AGG - chr2_1:12010531-12010550 Msa0195230:CDS 50.0%
GGATTCAACACTGCACAGCT+CGG + chr2_1:12010762-12010781 None:intergenic 50.0%
AACAAGCCAAAAACGCCGCC+GGG - chr2_1:12009124-12009143 Msa0195230:three_prime_UTR 55.0%
! ATTCTCTGCATTGACGGCGC+CGG - chr2_1:12009156-12009175 Msa0195230:three_prime_UTR 55.0%
GATTTCTTCGACGCCGTTGC+TGG - chr2_1:12009270-12009289 Msa0195230:exon 55.0%
GCTTCATCGGCAGTGAACAG+AGG + chr2_1:12009354-12009373 None:intergenic 55.0%
! TCTCCGGCGAGTTTTCTCAC+CGG - chr2_1:12009425-12009444 Msa0195230:CDS 55.0%
!! ACCGTCGATTTCGAGAGCGT+CGG + chr2_1:12009574-12009593 None:intergenic 55.0%
AACGCCGTTAAGTCTCCCTC+AGG - chr2_1:12009831-12009850 Msa0195230:intron 55.0%
CGGTGAAGGAGCTTCCGATA+TGG - chr2_1:12009869-12009888 Msa0195230:intron 55.0%
AACCGCCACCAAATCCGATG+TGG + chr2_1:12010336-12010355 None:intergenic 55.0%
AACAAGCCAAAAACGCCGCC+GGG - chr2_1:12009124-12009143 Msa0195230:three_prime_UTR 55.0%
! ATTCTCTGCATTGACGGCGC+CGG - chr2_1:12009156-12009175 Msa0195230:three_prime_UTR 55.0%
GATTTCTTCGACGCCGTTGC+TGG - chr2_1:12009270-12009289 Msa0195230:exon 55.0%
GCTTCATCGGCAGTGAACAG+AGG + chr2_1:12009354-12009373 None:intergenic 55.0%
! TCTCCGGCGAGTTTTCTCAC+CGG - chr2_1:12009425-12009444 Msa0195230:CDS 55.0%
!! ACCGTCGATTTCGAGAGCGT+CGG + chr2_1:12009574-12009593 None:intergenic 55.0%
AACGCCGTTAAGTCTCCCTC+AGG - chr2_1:12009831-12009850 Msa0195230:intron 55.0%
CGGTGAAGGAGCTTCCGATA+TGG - chr2_1:12009869-12009888 Msa0195230:intron 55.0%
AACCGCCACCAAATCCGATG+TGG + chr2_1:12010336-12010355 None:intergenic 55.0%
! GACTTTCCCGGCGGCGTTTT+TGG + chr2_1:12009133-12009152 None:intergenic 60.0%
GAGGATGCCGTCGGTGTAAC+CGG + chr2_1:12009178-12009197 None:intergenic 60.0%
GAGAGAGTGATTTCGCGGCG+AGG + chr2_1:12009197-12009216 None:intergenic 60.0%
GGGTGAAAAGTAAGGCGGCG+AGG + chr2_1:12009314-12009333 None:intergenic 60.0%
!! GCCGCCTTACTTTTCACCCG+TGG - chr2_1:12009315-12009334 Msa0195230:CDS 60.0%
CGCGTGACGAGATCGTAGCA+GGG + chr2_1:12009528-12009547 None:intergenic 60.0%
TCGGCGCGGGAGAAAACGAA+CGG + chr2_1:12009555-12009574 None:intergenic 60.0%
GCCGACGCTCTCGAAATCGA+CGG - chr2_1:12009570-12009589 Msa0195230:CDS 60.0%
TGCCACGTCAGCTGATCCAG+CGG - chr2_1:12009623-12009642 Msa0195230:CDS 60.0%
!! GGATTTGGTGGCGGTTTCGG+AGG - chr2_1:12010340-12010359 Msa0195230:CDS 60.0%
GGCGGTTTCGGAGGAGATGT+TGG - chr2_1:12010349-12010368 Msa0195230:CDS 60.0%
! GACTTTCCCGGCGGCGTTTT+TGG + chr2_1:12009133-12009152 None:intergenic 60.0%
GAGGATGCCGTCGGTGTAAC+CGG + chr2_1:12009178-12009197 None:intergenic 60.0%
GAGAGAGTGATTTCGCGGCG+AGG + chr2_1:12009197-12009216 None:intergenic 60.0%
GGGTGAAAAGTAAGGCGGCG+AGG + chr2_1:12009314-12009333 None:intergenic 60.0%
!! GCCGCCTTACTTTTCACCCG+TGG - chr2_1:12009315-12009334 Msa0195230:CDS 60.0%
CGCGTGACGAGATCGTAGCA+GGG + chr2_1:12009528-12009547 None:intergenic 60.0%
TCGGCGCGGGAGAAAACGAA+CGG + chr2_1:12009555-12009574 None:intergenic 60.0%
GCCGACGCTCTCGAAATCGA+CGG - chr2_1:12009570-12009589 Msa0195230:CDS 60.0%
TGCCACGTCAGCTGATCCAG+CGG - chr2_1:12009623-12009642 Msa0195230:CDS 60.0%
!! GGATTTGGTGGCGGTTTCGG+AGG - chr2_1:12010340-12010359 Msa0195230:CDS 60.0%
GGCGGTTTCGGAGGAGATGT+TGG - chr2_1:12010349-12010368 Msa0195230:CDS 60.0%
TTTCGCGGCGAGGATGCCGT+CGG + chr2_1:12009187-12009206 None:intergenic 65.0%
!! TTCGACGCCGTTGCTGGCTC+CGG - chr2_1:12009276-12009295 Msa0195230:exon 65.0%
ACCGACACCGGAGCCAGCAA+CGG + chr2_1:12009286-12009305 None:intergenic 65.0%
CCGGAGAATCCCCGATCGTC+GGG + chr2_1:12009412-12009431 None:intergenic 65.0%
CCCGACGATCGGGGATTCTC+CGG - chr2_1:12009409-12009428 Msa0195230:CDS 65.0%
GCCGGAGAATCCCCGATCGT+CGG + chr2_1:12009413-12009432 None:intergenic 65.0%
GCGCGTGACGAGATCGTAGC+AGG + chr2_1:12009529-12009548 None:intergenic 65.0%
!! GATTTCGAGAGCGTCGGCGC+GGG + chr2_1:12009568-12009587 None:intergenic 65.0%
!! CGATTTCGAGAGCGTCGGCG+CGG + chr2_1:12009569-12009588 None:intergenic 65.0%
AGCCGCTGGATCAGCTGACG+TGG + chr2_1:12009628-12009647 None:intergenic 65.0%
TTTCGCGGCGAGGATGCCGT+CGG + chr2_1:12009187-12009206 None:intergenic 65.0%
!! TTCGACGCCGTTGCTGGCTC+CGG - chr2_1:12009276-12009295 Msa0195230:exon 65.0%
ACCGACACCGGAGCCAGCAA+CGG + chr2_1:12009286-12009305 None:intergenic 65.0%
CCGGAGAATCCCCGATCGTC+GGG + chr2_1:12009412-12009431 None:intergenic 65.0%
CCCGACGATCGGGGATTCTC+CGG - chr2_1:12009409-12009428 Msa0195230:CDS 65.0%
GCCGGAGAATCCCCGATCGT+CGG + chr2_1:12009413-12009432 None:intergenic 65.0%
GCGCGTGACGAGATCGTAGC+AGG + chr2_1:12009529-12009548 None:intergenic 65.0%
!! GATTTCGAGAGCGTCGGCGC+GGG + chr2_1:12009568-12009587 None:intergenic 65.0%
!! CGATTTCGAGAGCGTCGGCG+CGG + chr2_1:12009569-12009588 None:intergenic 65.0%
AGCCGCTGGATCAGCTGACG+TGG + chr2_1:12009628-12009647 None:intergenic 65.0%
!! GACGGCGCCGGTTACACCGA+CGG - chr2_1:12009168-12009187 Msa0195230:three_prime_UTR 70.0%
!! GCCGTTGCTGGCTCCGGTGT+CGG - chr2_1:12009282-12009301 Msa0195230:CDS 70.0%
!! GTTGCTGGCTCCGGTGTCGG+TGG - chr2_1:12009285-12009304 Msa0195230:CDS 70.0%
GGCGAGGACTCCACCGACAC+CGG + chr2_1:12009298-12009317 None:intergenic 70.0%
!! GACGGCGCCGGTTACACCGA+CGG - chr2_1:12009168-12009187 Msa0195230:three_prime_UTR 70.0%
!! GCCGTTGCTGGCTCCGGTGT+CGG - chr2_1:12009282-12009301 Msa0195230:CDS 70.0%
!! GTTGCTGGCTCCGGTGTCGG+TGG - chr2_1:12009285-12009304 Msa0195230:CDS 70.0%
GGCGAGGACTCCACCGACAC+CGG + chr2_1:12009298-12009317 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12008841 12011035 12008841 ID=Msa0195230;Name=Msa0195230
chr2_1 mRNA 12008841 12011035 12008841 ID=Msa0195230-mRNA-1;Parent=Msa0195230;Name=Msa0195230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=111|1|1|1|1|1|2|437|437
chr2_1 exon 12008841 12009652 12008841 ID=Msa0195230-mRNA-1:exon:5231;Parent=Msa0195230-mRNA-1
chr2_1 exon 12009986 12011035 12009986 ID=Msa0195230-mRNA-1:exon:5230;Parent=Msa0195230-mRNA-1
chr2_1 five_prime_UTR 12010925 12011035 12010925 ID=Msa0195230-mRNA-1:five_prime_utr;Parent=Msa0195230-mRNA-1
chr2_1 CDS 12009986 12010924 12009986 ID=Msa0195230-mRNA-1:cds;Parent=Msa0195230-mRNA-1
chr2_1 CDS 12009278 12009652 12009278 ID=Msa0195230-mRNA-1:cds;Parent=Msa0195230-mRNA-1
chr2_1 three_prime_UTR 12008841 12009277 12008841 ID=Msa0195230-mRNA-1:three_prime_utr;Parent=Msa0195230-mRNA-1
Gene Sequence

>Msa0195230

ATGGCGGCACTGTCAACATCACCAATGAACAACAACTTGAACTTGAACACAATTGACACCAACTTCGAAGTTGATAAACTCACATACGAAATCTTCTCCATTTTGGAAAACAAATTCTTATTCGGATACACCGACACCGAAAATGCGAAGAATTCGCTTTCGATTGATGTCAAACAAGCCAAAAACGCCGCCGGGAAAGTCAGAATTCTCTGCATTGACGGCGCCGGTTACACCGACGGCATCCTCGCCGCGAAATCACTCTCTCACCTTGAATCCTGCCTCAGAAAGAAATCCGGTAACAGTAACTCTCATATTGCTGATTTCTTCGACGCCGTTGCTGGCTCCGGTGTCGGTGGAGTCCTCGCCGCCTTACTTTTCACCCGTGGTAAAGACGGATTACCTCTGTTCACTGCCGATGAAGCTTTGAAGTTTCTGATCAACAACCGTAACAGAATTTCCCGACGATCGGGGATTCTCCGGCGAGTTTTCTCACCGGAAACAAAATCGGAGAAGCTTTTCCGAAAAACATTCGGAGAATGCACACTGAAAGACACATTGAAACCGATTTTAATTCCCTGCTACGATCTCGTCACGCGCGCACCGTTCGTTTTCTCCCGCGCCGACGCTCTCGAAATCGACGGTTACGATTTCAAGATGCGTGATGTCTGTGATGCCACGTCAGCTGATCCAGCGGCTCCTATTGAATTGAAGTCCATCGATGGGAAGACGAAGATCTTAGCCGTTGATGGAGGTGTTGCGATGAACAATCCAACGGCTACTGCTGTTACTCACGTGCTTAATAATAAACATGAGTTTCCGTTTTGTAACGGTGTTTCTGATTTGTTGGTGCTTTCTCTTGGTAACGGAGAGTTGGACTTTAACGCCGTTAAGTCTCCCTCAGGTTTCGTGAGAATTGCCGGTGAAGGAGCTTCCGATATGGTTGATCAAGCTGTATCAATGGCATTTGGAGAATGTAGATTGAACAATTATGTGCGGATTCAATCAAATGGGGTGATGGCTAAGGTAAACAAAGGGAAGACGGGGAAAACCACATCGGATTTGGTGGCGGTTTCGGAGGAGATGTTGGCACAGAAGAATGTTGAGTCAGTCTTATTTAAAGGAAGGAAGATCGTGGAGAACACAAATTTAGACAAATTGAAATTGTTTGGTGGAGAGTTGATTAAGGAAGAAGAGAGGAGAAAAACTAGTATTTTACCAACTGTTGTGTTGAAGAATGGATCTCCCTCCCCTAGAACTTCATCTCCTAGGACTTCATCAGCTACTACTTTGTCAACTTCATCTTCAAGCTCTTAG

Protein sequence

>Msa0195230

MAALSTSPMNNNLNLNTIDTNFEVDKLTYEIFSILENKFLFGYTDTENAKNSLSIDVKQAKNAAGKVRILCIDGAGYTDGILAAKSLSHLESCLRKKSGNSNSHIADFFDAVAGSGVGGVLAALLFTRGKDGLPLFTADEALKFLINNRNRISRRSGILRRVFSPETKSEKLFRKTFGECTLKDTLKPILIPCYDLVTRAPFVFSRADALEIDGYDFKMRDVCDATSADPAAPIELKSIDGKTKILAVDGGVAMNNPTATAVTHVLNNKHEFPFCNGVSDLLVLSLGNGELDFNAVKSPSGFVRIAGEGASDMVDQAVSMAFGECRLNNYVRIQSNGVMAKVNKGKTGKTTSDLVAVSEEMLAQKNVESVLFKGRKIVENTNLDKLKLFGGELIKEEERRKTSILPTVVLKNGSPSPRTSSPRTSSATTLSTSSSSS*