AlfalfaGEDB | Msa0001800

M. sativa cultivar zhongmu-4 / Msa0001800

KEGG: K01528
GO: GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568
PFAM: PF00350.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001800	sp\|Q8LF21\|DRP1C_ARATH	83.385	650	70	4	1	648	1	614	0.0	1112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0013270	0.837031	6.606584e-57	-8.615850e-47
Msa0001800	Msa0025570	0.832209	1.077335e-55	-8.615850e-47
Msa0001800	Msa0036810	0.811059	8.458967e-51	-8.615850e-47
Msa0001800	Msa0040640	0.816685	4.869284e-52	-8.615850e-47
Msa0001800	Msa0040930	0.805882	1.076978e-49	-8.615850e-47
Msa0001800	Msa0044310	0.826705	2.342778e-54	-8.615850e-47
Msa0001800	Msa0044780	-0.829909	3.953479e-55	-8.615850e-47
Msa0001800	Msa0045810	0.836091	1.146645e-56	-8.615850e-47
Msa0001800	Msa0046200	0.824521	7.716974e-54	-8.615850e-47
Msa0001800	Msa0046970	0.842124	3.132496e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001800	MtrunA17_Chr8g0391891	95.062	648	0	1	1	648	1	616	0.0	1254
Msa0001800	MtrunA17_Chr8g0337041	72.564	667	131	6	1	647	1	635	0.0	965
Msa0001800	MtrunA17_Chr7g0233071	74.312	654	122	6	1	647	1	615	0.0	962
Msa0001800	MtrunA17_Chr4g0055051	68.161	647	161	5	4	647	1	605	0.0	915
Msa0001800	MtrunA17_Chr8g0388271	63.231	650	191	5	4	647	1	608	0.0	873
Msa0001800	MtrunA17_Chr5g0396561	62.826	651	193	5	4	647	1	609	0.0	866
Msa0001800	MtrunA17_Chr8g0346971	62.137	655	198	5	4	647	1	616	0.0	845
Msa0001800	MtrunA17_Chr1g0161401	91.640	311	26	0	167	477	6	316	0.0	602
Msa0001800	MtrunA17_Chr2g0279671	36.381	525	282	8	5	519	22	504	1.27e-90	299
Msa0001800	MtrunA17_Chr1g0161411	77.326	172	37	1	477	648	2	171	4.49e-88	271

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0001800	AT1G14830.1	83.385	650	70	4	1	648	1	614	1112
Msa0001800	AT3G60190.1	73.476	656	131	5	1	647	1	622	996
Msa0001800	AT2G44590.3	70.679	648	148	4	4	647	1	610	947
Msa0001800	AT2G44590.2	68.056	648	148	5	4	647	1	593	904
Msa0001800	AT2G44590.1	67.951	649	148	6	4	647	1	594	900
Msa0001800	AT3G61760.1	63.524	647	194	6	4	647	1	608	862
Msa0001800	AT5G42080.4	63.524	647	194	5	4	647	1	608	861
Msa0001800	AT5G42080.1	63.524	647	194	5	4	647	1	608	861
Msa0001800	AT5G42080.3	62.906	647	192	6	4	647	1	602	846
Msa0001800	AT3G61760.2	64.086	607	176	6	4	607	1	568	813

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Find 179 sgRNAs with CRISPR-Local

Find 535 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACGTACCAATCTTG+CGG	0.622307	1_1:-3526433	None:intergenic
AAACTTGATCTTATGGATAA+AGG	0.363059	1_1:+3523980	Msa0001800:CDS
AAAGCAAGAAGACAGTTACG+CGG	0.786445	1_1:+3526270	Msa0001800:CDS
AAAGTTGTCACTGAAGCTGA+TGG	0.531731	1_1:+3524998	Msa0001800:CDS
AAATGAAGGTTCTTGAAGGG+CGG	0.668784	1_1:+3524136	Msa0001800:intron
AAATGAATACCAGATCCACG+AGG	0.806447	1_1:-3520091	None:intergenic
AACAACACTTTCCAAGACAG+AGG	0.607579	1_1:-3520053	None:intergenic
AACCGCTGCAAATGAAGCAC+TGG	0.596471	1_1:+3526232	Msa0001800:CDS
AACTCAGTGGCTTTATACAC+TGG	0.514413	1_1:-3528165	None:intergenic
AACTCGAACAGAAAAGTCTA+AGG	0.413813	1_1:+3528102	Msa0001800:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAATTTCATAACCTACGT+TGG	-	chr1_1:3520327-3520346	None:intergenic	30.0%
TGGATAATTTATCTTCTCAC+AGG	+	chr1_1:3521057-3521076	Msa0001800:intron	30.0%
ACTAGTTACCATTAAGTCAT+AGG	+	chr1_1:3521114-3521133	Msa0001800:intron	30.0%
CAGAATAGAACCAATTAGTT+AGG	-	chr1_1:3521284-3521303	None:intergenic	30.0%
ATGAAACAGATCGAATAACT+GGG	+	chr1_1:3521348-3521367	Msa0001800:CDS	30.0%
AAGCTTGAAAGCAAATTGAT+TGG	+	chr1_1:3521464-3521483	Msa0001800:intron	30.0%
AGCTTGAAAGCAAATTGATT+GGG	+	chr1_1:3521465-3521484	Msa0001800:intron	30.0%
AACGATAACAAGGACATAAA+AGG	-	chr1_1:3521515-3521534	None:intergenic	30.0%
AATGGGAATATGAAAACACA+TGG	+	chr1_1:3522073-3522092	Msa0001800:intron	30.0%
AATTGAGTGGTATTCTAACA+AGG	+	chr1_1:3522277-3522296	Msa0001800:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	3519633	3528270	3519633	ID=Msa0001800;Name=Msa0001800
chr1_1	mRNA	3519633	3528270	3519633	ID=Msa0001800-mRNA-1;Parent=Msa0001800;Name=Msa0001800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=275\|0.92\|0.93\|1\|1\|1\|15\|247\|648
chr1_1	exon	3519633	3520103	3519633	ID=Msa0001800-mRNA-1:exon:986;Parent=Msa0001800-mRNA-1
chr1_1	exon	3520692	3520892	3520692	ID=Msa0001800-mRNA-1:exon:987;Parent=Msa0001800-mRNA-1
chr1_1	exon	3521324	3521425	3521324	ID=Msa0001800-mRNA-1:exon:988;Parent=Msa0001800-mRNA-1
chr1_1	exon	3522184	3522234	3522184	ID=Msa0001800-mRNA-1:exon:989;Parent=Msa0001800-mRNA-1
chr1_1	exon	3522347	3522408	3522347	ID=Msa0001800-mRNA-1:exon:990;Parent=Msa0001800-mRNA-1
chr1_1	exon	3523731	3523821	3523731	ID=Msa0001800-mRNA-1:exon:991;Parent=Msa0001800-mRNA-1
chr1_1	exon	3523954	3524018	3523954	ID=Msa0001800-mRNA-1:exon:992;Parent=Msa0001800-mRNA-1
chr1_1	exon	3524144	3524338	3524144	ID=Msa0001800-mRNA-1:exon:993;Parent=Msa0001800-mRNA-1
chr1_1	exon	3524470	3524589	3524470	ID=Msa0001800-mRNA-1:exon:994;Parent=Msa0001800-mRNA-1
chr1_1	exon	3524689	3524759	3524689	ID=Msa0001800-mRNA-1:exon:995;Parent=Msa0001800-mRNA-1
chr1_1	exon	3524895	3525120	3524895	ID=Msa0001800-mRNA-1:exon:996;Parent=Msa0001800-mRNA-1
chr1_1	exon	3525781	3525831	3525781	ID=Msa0001800-mRNA-1:exon:997;Parent=Msa0001800-mRNA-1
chr1_1	exon	3526194	3526443	3526194	ID=Msa0001800-mRNA-1:exon:998;Parent=Msa0001800-mRNA-1
chr1_1	exon	3527132	3527271	3527132	ID=Msa0001800-mRNA-1:exon:999;Parent=Msa0001800-mRNA-1
chr1_1	exon	3527898	3528270	3527898	ID=Msa0001800-mRNA-1:exon:1000;Parent=Msa0001800-mRNA-1
chr1_1	five_prime_UTR	3519633	3519907	3519633	ID=Msa0001800-mRNA-1:five_prime_utr;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3519908	3520103	3519908	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3520692	3520892	3520692	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3521324	3521425	3521324	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3522184	3522234	3522184	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3522347	3522408	3522347	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3523731	3523821	3523731	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3523954	3524018	3523954	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3524144	3524338	3524144	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3524470	3524589	3524470	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3524689	3524759	3524689	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3524895	3525120	3524895	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3525781	3525831	3525781	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3526194	3526443	3526194	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3527132	3527271	3527132	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	CDS	3527898	3528023	3527898	ID=Msa0001800-mRNA-1:cds;Parent=Msa0001800-mRNA-1
chr1_1	three_prime_UTR	3528024	3528270	3528024	ID=Msa0001800-mRNA-1:three_prime_utr;Parent=Msa0001800-mRNA-1

Gene Sequence

>Msa0001800

ATGGCGACGATGACGAGCTTGATCGGTCTTATTAACAAGATCCAACGAGCTTGTACCGTTTTAGGTGATCACGGTGGCGAAGGTTTATCTCTTTGGGAAGCTCTTCCTTCCGTCGCCGTCGTCGGTGGACAGAGTTCAGGAAAATCCTCTGTCTTGGAAAGTGTTGTTGGAAGAGACTTTCTTCCTCGTGGATCTGGGGTGTTGTGCATTGTATTGATCGGAGTGGAAGATTCTATTGTTTTTGCATTTCTGAATGAATGGCTTTTTGATGTTGTCTTTCATTATTTACAAGGTATTGTTACGCGGAGGCCGCTGGTACTGCAACTTCATAAGACCGAAAATGGCCAGGAATATGCTGAGTTTCTTCACTTGCCAAGAAAGAGATTCACCGACTTCGCTGCTGTGAGGAAGGAAATAGCAGATGAAACAGATCGAATAACTGGGAAGTCAAAGCAAATTTCAAACATTCCTATTCAACTCAGCATTTATTCTCCAAATGTTGTAAACTTAACCCTCATAGATCTTCCTGGGCTGACAAAGGTTGCAGTAGAGGGGCAACAAGAGAGTATTGTTCAAGATATTGAACAAATGGTCCGTTCGTATGTTGAGAAGCCGAACTGCATTATCTTAGCCATCTCTCCCGCCAATCAAGATATTGCCACTTCAGATGCCATAAAAATTGCAAAAGAAGTCGATCCTTCAGGTGAAAGAACATTTGGAGTGGTTACAAAACTTGATCTTATGGATAAAGGAACTAATGCAGTTGATGTTCTTGAAGGGCGGCAATACAGGCTGCAGCATCCATGGGTTGGAATTGTGAACCGTTCACAAGCTGATATTAATAAAAATGTCGACATGATTGTTGCTCGAAGGAAGGAACGTGAATATTTTGAGACAAGTCCAGAATATGGACATTTGGCGCATAAAATGGGATCAGAATATCTTGCTAGGCTTCTATCTCAGCATTTGGAGCAAGTTATCAGGCAGAAGATACCTAGTATCATTGCCTTAATAAACAAGACAATTGATGAGCTTAATGCAGAGTTAGACCGCATTGGCAGGCCGATTGCAGTGGATTCCGGGGCCCAACTATACACCATTTTAGAAATGTGTCGTGCATTTGATAAAGTATTTAAAGAGCACCTGGATGGAGGACGTCCTGGTGGGGACCGGATATACGGAGTTTTTGATCACCAATTACCGGCTGCTTTAAAAAAACTTCCCTTTGATCGCCATCTTTCCTTAAAAAATGTCCAAAAAGTTGTCACTGAAGCTGATGGGTATCAACCTCATCTGATTGCTCCAGAGCAGGGTTATAGAAGACTCATTGAAGGGTCTATCAGCTATTTCAAAGGCCCAGCAGAAGCCTCCGTGGATGCTGTCCATTTTGTTTTGAAGGAACTTGTACGTAAGTCAATTGCAGAAACAGAGGAGTTAAGAAGATTTCCAACGCTTTCAAATGACATTGCAACCGCTGCAAATGAAGCACTGGATAAATTCCGAGACGAAAGCAAGAAGACAGTTACGCGGCTGGTTGATATGGAGTCTAGCTATCTAACAGCAGAATTCTTTAGGAAGATTCATCTTGAACCAGAAAAGAACCCAAATGGACCACCAAATTCAAACCGGAATGCTCCCCCCAACAATGATAATTTTACTGACAATCACCTCCGCAAGATTGGATCAAATGTAAGTGCTTATATCAATATGGTCTGTGATACACTCAAGAATACTATACCAAAAGCCGTAGTCCATTGTCAAGTTAGAGAAGCCAAGAGATCATTGCTAAACTACTTTTATGTTCAAGTTGGAAAGAAGGAGAAGGAGAAATTGGGTGCCATGTTGGATGAAGACCCATCCCTAATGGAAAAGAGAAATCAAATAGCCAAGAGGCTTGAATTGTACAAGCAAGCTAGAGACGATATCGACTCTGTGGCTTGGAAATAG

Protein sequence

>Msa0001800

MATMTSLIGLINKIQRACTVLGDHGGEGLSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGVLCIVLIGVEDSIVFAFLNEWLFDVVFHYLQGIVTRRPLVLQLHKTENGQEYAEFLHLPRKRFTDFAAVRKEIADETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVEGQQESIVQDIEQMVRSYVEKPNCIILAISPANQDIATSDAIKIAKEVDPSGERTFGVVTKLDLMDKGTNAVDVLEGRQYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFETSPEYGHLAHKMGSEYLARLLSQHLEQVIRQKIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDKVFKEHLDGGRPGGDRIYGVFDHQLPAALKKLPFDRHLSLKNVQKVVTEADGYQPHLIAPEQGYRRLIEGSISYFKGPAEASVDAVHFVLKELVRKSIAETEELRRFPTLSNDIATAANEALDKFRDESKKTVTRLVDMESSYLTAEFFRKIHLEPEKNPNGPPNSNRNAPPNNDNFTDNHLRKIGSNVSAYINMVCDTLKNTIPKAVVHCQVREAKRSLLNYFYVQVGKKEKEKLGAMLDEDPSLMEKRNQIAKRLELYKQARDDIDSVAWK*