AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097710 MtrunA17_Chr7g0220791 100.000 52 0 0 1 52 1 52 3.04e-32 104
Msa1097710 MtrunA17_Chr7g0220801 100.000 52 0 0 1 52 1 52 3.04e-32 104
Msa1097710 MtrunA17_Chr7g0220831 96.154 52 2 0 1 52 1 52 7.93e-31 101
Msa1097710 MtrunA17_Chr4g0020171 96.154 52 2 0 1 52 1 52 7.93e-31 101
Msa1097710 MtrunA17_Chr8g0368651 76.923 52 11 1 1 52 1 51 5.37e-17 66.2
Msa1097710 MtrunA17_Chr4g0021531 75.000 36 9 0 17 52 19 54 3.19e-16 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAGACTGGAATTGATTT+TGG 0.188109 7_3:-23192259 None:intergenic
CCTCACTCCAGCAACATTTC+AGG 0.206600 7_3:-23194812 None:intergenic
TGATTATGTTTACTGTTATC+AGG 0.213232 7_3:+23194895 Msa1097710:three_prime_UTR
GCATAGCTGAATCCATCTTC+TGG 0.235555 7_3:-23194531 None:intergenic
TTCTCTCCGTTTCTCTCTTT+CGG 0.241883 7_3:+23192311 Msa1097710:five_prime_UTR
AAGTCGCATATGTCAGATTT+TGG 0.242078 7_3:-23194438 None:intergenic
CGATGGAAGAGAAGAAAATT+AGG 0.246763 7_3:-23192284 None:intergenic
CGCGGAAGCTTCATCTTTCC+TGG 0.256495 7_3:+23194126 Msa1097710:three_prime_UTR
AATCTCGTCAATTTGGTCTT+TGG 0.259345 7_3:-23193899 None:intergenic
AAATTTCCTTTGGAGGTTAA+AGG 0.271383 7_3:+23194687 Msa1097710:three_prime_UTR
GCTGTTCTTGACAGCTATTT+TGG 0.280170 7_3:+23194189 Msa1097710:three_prime_UTR
GAAAATTAGGTTTCGGAGAC+TGG 0.283763 7_3:-23192271 None:intergenic
TTCTCTGACCCTGCTGGATT+AGG 0.287048 7_3:+23193862 Msa1097710:three_prime_UTR
ATTTATTTCGAAATATAATA+AGG 0.290488 7_3:-23194998 None:intergenic
TGACTCGCTTAAATTTATTC+AGG 0.295150 7_3:-23194925 None:intergenic
CAAACCATCCTGAGATTTCC+TGG 0.321306 7_3:+23193610 Msa1097710:exon
GTTTCAGAATCTCGTCAATT+TGG 0.331728 7_3:-23193906 None:intergenic
GGTTTGATGACTAAGAATTC+TGG 0.333324 7_3:+23194399 Msa1097710:three_prime_UTR
TGAGAACGAGGAGGAAGTTA+AGG 0.347960 7_3:+23194836 Msa1097710:three_prime_UTR
GAGGAGGGAGGACAAGAAAA+AGG 0.353170 7_3:-23193690 None:intergenic
ATGCTGATAAGTCACAAATT+TGG 0.357352 7_3:+23194250 Msa1097710:three_prime_UTR
AAAACTTGACAAATTTCCTT+TGG 0.369192 7_3:+23194677 Msa1097710:three_prime_UTR
GAGAGGTGCTTCGTACAAAA+AGG 0.372510 7_3:-23193393 None:intergenic
CATAGCTGAATCCATCTTCT+GGG 0.386679 7_3:-23194530 None:intergenic
ACTTCGAATTTGAACCTTGC+GGG 0.393253 7_3:+23194457 Msa1097710:three_prime_UTR
GCTTCACCGGAAGCTGTCTA+TGG 0.396357 7_3:+23194303 Msa1097710:three_prime_UTR
AAGAGAAGAAAATTAGGTTT+CGG 0.398693 7_3:-23192278 None:intergenic
TCAAGGCCATAGACAGCTTC+CGG 0.398954 7_3:-23194309 None:intergenic
TCGGCAAGCTTAAGAATTGC+AGG 0.407592 7_3:-23194066 None:intergenic
CGTACCTTTGTTCGAAATGA+TGG 0.419044 7_3:+23194768 Msa1097710:three_prime_UTR
GGTCTACCCTGAAATGTTGC+TGG 0.420536 7_3:+23194805 Msa1097710:three_prime_UTR
AACCAGTCATGCACATTTCA+AGG 0.440811 7_3:-23194326 None:intergenic
ACTTGACAAATTTCCTTTGG+AGG 0.442578 7_3:+23194680 Msa1097710:three_prime_UTR
TGACTAAGAATTCTGGAATC+AGG 0.442912 7_3:+23194406 Msa1097710:three_prime_UTR
TTCTGGGGTGACATGGATAG+TGG 0.444514 7_3:-23194514 None:intergenic
TACTCGATGAACGGAATTGA+AGG 0.451132 7_3:+23194480 Msa1097710:three_prime_UTR
TGAGGGAAGGATTGAGCTCC+AGG 0.451159 7_3:-23194144 None:intergenic
GATTATGTTTACTGTTATCA+GGG 0.461194 7_3:+23194896 Msa1097710:three_prime_UTR
GGCCTTGAAATGTGCATGAC+TGG 0.467615 7_3:+23194324 Msa1097710:three_prime_UTR
ATCCATGTCACCCCAGAAGA+TGG 0.468783 7_3:+23194519 Msa1097710:three_prime_UTR
CACAGCAATGTTTAGACCAT+CGG 0.469271 7_3:-23194085 None:intergenic
AAGGAGATATAATACTACTT+TGG 0.470394 7_3:+23194855 Msa1097710:three_prime_UTR
GAAAGAATCAATGAAGTGCT+TGG 0.474283 7_3:+23194723 Msa1097710:three_prime_UTR
GTGAAGTGTGAATGAACTAA+TGG 0.476790 7_3:+23193328 Msa1097710:intron
AAGACAGATGCATCTTCAGC+AGG 0.478706 7_3:+23194378 Msa1097710:three_prime_UTR
TTTGGTCTTTGGACAATGCT+CGG 0.490726 7_3:-23193888 None:intergenic
CTCACTCCAGCAACATTTCA+GGG 0.494047 7_3:-23194811 None:intergenic
TCAACAATGGTGCATTCTGC+TGG 0.497159 7_3:-23193928 None:intergenic
ATCACAACCCAGGAAATCTC+AGG 0.506471 7_3:-23193618 None:intergenic
TCTAAACATTGCTGTGAAAT+CGG 0.506691 7_3:+23194092 Msa1097710:three_prime_UTR
AAGCAATTTCGTAGTCCCGC+AGG 0.513037 7_3:-23194034 None:intergenic
TACAGAAATGAAGGAAATTG+AGG 0.513480 7_3:-23192335 None:intergenic
CTCTGAACGAACTTGTTGCA+AGG 0.516760 7_3:+23194592 Msa1097710:three_prime_UTR
GCTCGGAGGCCTAATCCAGC+AGG 0.517190 7_3:-23193871 None:intergenic
TCATGGTCATCTTGACTCAA+AGG 0.518087 7_3:-23193771 None:intergenic
AAATGCACTTACAGAAATGA+AGG 0.523434 7_3:-23192344 None:intergenic
GACTGGTTTAGATAAAGAAA+AGG 0.528480 7_3:+23194341 Msa1097710:three_prime_UTR
CATCACCCATCATGTAAGCT+TGG 0.530202 7_3:-23194230 None:intergenic
TTGTATCCTTTAACCTCCAA+AGG 0.534196 7_3:-23194693 None:intergenic
CAACATTTCAGGGTAGACCT+TGG 0.534721 7_3:-23194801 None:intergenic
ATTCAATCATCAAACGATGA+TGG 0.535335 7_3:+23195048 Msa1097710:three_prime_UTR
GTCAAGAACAGCAACTTCCT+CGG 0.536338 7_3:-23194178 None:intergenic
ATCCATCTTCTGGGGTGACA+TGG 0.537196 7_3:-23194521 None:intergenic
ATTGAAGACGTTCGACCTAA+CGG 0.537316 7_3:+23193425 Msa1097710:CDS
TCTGAACGAACTTGTTGCAA+GGG 0.547830 7_3:+23194593 Msa1097710:three_prime_UTR
AACTTATCATCAAAACCTGC+GGG 0.549743 7_3:+23194019 Msa1097710:three_prime_UTR
CTATGCAAGCTTTGAAGCAG+TGG 0.552481 7_3:+23194548 Msa1097710:three_prime_UTR
TGCTAAGCTAGACGCTTCAC+CGG 0.556532 7_3:+23194290 Msa1097710:three_prime_UTR
AATGAAGTGCTTGGAGAAGA+CGG 0.567752 7_3:+23194732 Msa1097710:three_prime_UTR
CCGTTCATCGAGTACCCGCA+AGG 0.572227 7_3:-23194471 None:intergenic
CGGTAGCCAAGCTTACATGA+TGG 0.573036 7_3:+23194224 Msa1097710:three_prime_UTR
AAACCATCCTGAGATTTCCT+GGG 0.577254 7_3:+23193611 Msa1097710:exon
CATCATGTAAGCTTGGCTAC+CGG 0.578005 7_3:-23194223 None:intergenic
TGAATAAGCTTGACTCGGAT+AGG 0.578524 7_3:-23193984 None:intergenic
TGAGGACCGAAAGAGAGAAA+CGG 0.578571 7_3:-23192317 None:intergenic
GAAACGGAGAGAAAGAGCGA+TGG 0.585934 7_3:-23192301 None:intergenic
GCAATTCTTAAGCTTGCCGA+TGG 0.593187 7_3:+23194069 Msa1097710:three_prime_UTR
ATGATGGCTGCTCATCTCCA+AGG 0.593841 7_3:+23194784 Msa1097710:three_prime_UTR
GAAATCTGAGAAGCATAGAT+CGG 0.595102 7_3:+23192486 Msa1097710:five_prime_UTR
GGTAGCCAAGCTTACATGAT+GGG 0.595267 7_3:+23194225 Msa1097710:three_prime_UTR
TATGCAAGCTTTGAAGCAGT+GGG 0.601223 7_3:+23194549 Msa1097710:three_prime_UTR
ACCATGACAAACTCAGCTAT+CGG 0.606560 7_3:+23193787 Msa1097710:three_prime_UTR
AATGCAACAGAAAACTCAGC+TGG 0.608895 7_3:-23194633 None:intergenic
AATGAACTAATGGAGTCTAA+AGG 0.613513 7_3:+23193338 Msa1097710:exon
ACCGATAGCTGAGTTTGTCA+TGG 0.615180 7_3:-23193788 None:intergenic
TCCTCGGAAAAGCTTCGATG+AGG 0.618294 7_3:-23194162 None:intergenic
CCTCGGAAAAGCTTCGATGA+GGG 0.624053 7_3:-23194161 None:intergenic
GGAAAAGCTTCGATGAGGGA+AGG 0.627007 7_3:-23194157 None:intergenic
CCTTGCGGGTACTCGATGAA+CGG 0.629304 7_3:+23194471 Msa1097710:three_prime_UTR
ATTAGATAGTGAGTCAACAA+TGG 0.640442 7_3:-23193941 None:intergenic
GAACTAATGGAGTCTAAAGG+TGG 0.640546 7_3:+23193341 Msa1097710:exon
CCTGAAATGTTGCTGGAGTG+AGG 0.643570 7_3:+23194812 Msa1097710:three_prime_UTR
CGGCAAGCTTAAGAATTGCA+GGG 0.643796 7_3:-23194065 None:intergenic
AAACTTATCATCAAAACCTG+CGG 0.648431 7_3:+23194018 Msa1097710:three_prime_UTR
CTGGAGTGAGGATGAGAACG+AGG 0.648538 7_3:+23194824 Msa1097710:three_prime_UTR
GCAGCCATCATTTCGAACAA+AGG 0.652571 7_3:-23194772 None:intergenic
CATCATTTCGAACAAAGGTA+CGG 0.654774 7_3:-23194767 None:intergenic
ATAGATGAATAAGCTTGACT+CGG 0.663143 7_3:-23193989 None:intergenic
GGTCTTTGGACAATGCTCGG+AGG 0.663736 7_3:-23193885 None:intergenic
GCATTGCACATTGATGCGAA+TGG 0.665215 7_3:+23194651 Msa1097710:three_prime_UTR
CTCGGAGGCCTAATCCAGCA+GGG 0.668437 7_3:-23193870 None:intergenic
GACTTCGAATTTGAACCTTG+CGG 0.668468 7_3:+23194456 Msa1097710:three_prime_UTR
CAACCCAGGAAATCTCAGGA+TGG 0.672736 7_3:-23193614 None:intergenic
GAGGTTAAAGGATACAACTG+TGG 0.681618 7_3:+23194699 Msa1097710:three_prime_UTR
ATAGCTGAATCCATCTTCTG+GGG 0.683255 7_3:-23194529 None:intergenic
GAGTGAGGATGAGAACGAGG+AGG 0.703166 7_3:+23194827 Msa1097710:three_prime_UTR
GAAGACGTTCGACCTAACGG+TGG 0.747756 7_3:+23193428 Msa1097710:CDS
AAATCGGTGAGATACACTCG+CGG 0.764779 7_3:+23194108 Msa1097710:three_prime_UTR
TCTTCAATGATGTAACCGAG+AGG 0.773111 7_3:-23193410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAACAACAAAAATA+AGG - chr7_3:23192815-23192834 None:intergenic 10.0%
!! ATTTATTTCGAAATATAATA+AGG - chr7_3:23195001-23195020 None:intergenic 10.0%
!!! TATGATTATTTTCCAATTTT+TGG + chr7_3:23192666-23192685 Msa1097710:intron 15.0%
!!! ATTTAGCTTTTTTTTAACAA+TGG - chr7_3:23193173-23193192 None:intergenic 15.0%
!! ATAATGTTAACATTAATCAA+AGG - chr7_3:23193516-23193535 None:intergenic 15.0%
!! ATCAAACAAAATAAAAACAG+AGG - chr7_3:23192431-23192450 None:intergenic 20.0%
!!! GTTTTTATTTTGTTTGATTC+AGG + chr7_3:23192433-23192452 Msa1097710:intron 20.0%
!! TTTCATAATCATCCAAAAAT+TGG - chr7_3:23192681-23192700 None:intergenic 20.0%
!! AAAAACAACAAAAATAAGGA+AGG - chr7_3:23192811-23192830 None:intergenic 20.0%
!! CAAAAATCAAGAATAAGAAA+AGG - chr7_3:23192863-23192882 None:intergenic 20.0%
!!! CTTTTCTGTTTATTTTCATT+TGG + chr7_3:23192993-23193012 Msa1097710:intron 20.0%
!! TATTCAAGATGTATTATTTC+AGG + chr7_3:23193080-23193099 Msa1097710:intron 20.0%
!! AAAGGAATTGAAATTGAAAT+GGG - chr7_3:23193498-23193517 None:intergenic 20.0%
!! TATAGTATATTGCATAAGAT+TGG + chr7_3:23193533-23193552 Msa1097710:intron 20.0%
!! ACTGCATAATAAAGAAAAAA+GGG - chr7_3:23193583-23193602 None:intergenic 20.0%
! AAGAGAAGAAAATTAGGTTT+CGG - chr7_3:23192281-23192300 None:intergenic 25.0%
! CAATTGAGAAGAATACATAA+AGG - chr7_3:23192375-23192394 None:intergenic 25.0%
!! AGATTTCTTTTCAATGAATC+AGG - chr7_3:23192473-23192492 None:intergenic 25.0%
!! ACTCACAGTTTTTAAACAAT+TGG - chr7_3:23192515-23192534 None:intergenic 25.0%
!!! CTGTTTTAGGTTATTGTTTA+TGG + chr7_3:23192563-23192582 Msa1097710:intron 25.0%
!! TTATTTTCATTTGGTTGCAT+AGG + chr7_3:23193002-23193021 Msa1097710:intron 25.0%
! ATTTACACTTTCAATTGCAA+TGG + chr7_3:23193028-23193047 Msa1097710:intron 25.0%
! GTACTATCATTTACCAATAT+TGG + chr7_3:23193050-23193069 Msa1097710:intron 25.0%
! TGAATAACATACACCAATAT+TGG - chr7_3:23193066-23193085 None:intergenic 25.0%
!! TTATAACATTTTGTAATCCC+TGG + chr7_3:23193262-23193281 Msa1097710:intron 25.0%
! CAAAGGAATTGAAATTGAAA+TGG - chr7_3:23193499-23193518 None:intergenic 25.0%
! CACTGCATAATAAAGAAAAA+AGG - chr7_3:23193584-23193603 None:intergenic 25.0%
!!! TTTTGTTGTTTGTAGAGAAA+GGG - chr7_3:23193741-23193760 None:intergenic 25.0%
!!! TTTTTGTTGTTTGTAGAGAA+AGG - chr7_3:23193742-23193761 None:intergenic 25.0%
!!! GAGATAACTTTTTTCGAAAA+TGG + chr7_3:23193835-23193854 Msa1097710:three_prime_UTR 25.0%
! AAAACTTGACAAATTTCCTT+TGG + chr7_3:23194677-23194696 Msa1097710:three_prime_UTR 25.0%
! AAGGAGATATAATACTACTT+TGG + chr7_3:23194855-23194874 Msa1097710:three_prime_UTR 25.0%
! TGATTATGTTTACTGTTATC+AGG + chr7_3:23194895-23194914 Msa1097710:three_prime_UTR 25.0%
! GATTATGTTTACTGTTATCA+GGG + chr7_3:23194896-23194915 Msa1097710:three_prime_UTR 25.0%
!!! CTTTTATTTTTGCAACAATG+GGG - chr7_3:23195074-23195093 None:intergenic 25.0%
!!! CCTTTTATTTTTGCAACAAT+GGG - chr7_3:23195075-23195094 None:intergenic 25.0%
!!! TCCTTTTATTTTTGCAACAA+TGG - chr7_3:23195076-23195095 None:intergenic 25.0%
TACAGAAATGAAGGAAATTG+AGG - chr7_3:23192338-23192357 None:intergenic 30.0%
AAATGCACTTACAGAAATGA+AGG - chr7_3:23192347-23192366 None:intergenic 30.0%
!!! TCATCTTTTTGTGCTGTTTT+AGG + chr7_3:23192550-23192569 Msa1097710:intron 30.0%
! AACGCATTTGATGATTGAAA+CGG + chr7_3:23192753-23192772 Msa1097710:intron 30.0%
TTACAGATACCACATAGATT+TGG + chr7_3:23192930-23192949 Msa1097710:intron 30.0%
GATTTCTGCGCAATTATTAT+TGG + chr7_3:23193198-23193217 Msa1097710:intron 30.0%
TTAGTCACAAAAATAGACCA+GGG - chr7_3:23193282-23193301 None:intergenic 30.0%
AATGAACTAATGGAGTCTAA+AGG + chr7_3:23193338-23193357 Msa1097710:exon 30.0%
! TTGCATAAGATTGGTTGATT+TGG + chr7_3:23193542-23193561 Msa1097710:intron 30.0%
TAAAAACTATATCACAACCC+AGG - chr7_3:23193631-23193650 None:intergenic 30.0%
! TGGGTTGTGATATAGTTTTT+AGG + chr7_3:23193630-23193649 Msa1097710:three_prime_UTR 30.0%
ATTAGATAGTGAGTCAACAA+TGG - chr7_3:23193944-23193963 None:intergenic 30.0%
ATAGATGAATAAGCTTGACT+CGG - chr7_3:23193992-23194011 None:intergenic 30.0%
AAACTTATCATCAAAACCTG+CGG + chr7_3:23194018-23194037 Msa1097710:three_prime_UTR 30.0%
TCTAAACATTGCTGTGAAAT+CGG + chr7_3:23194092-23194111 Msa1097710:three_prime_UTR 30.0%
ATGCTGATAAGTCACAAATT+TGG + chr7_3:23194250-23194269 Msa1097710:three_prime_UTR 30.0%
!! GACTGGTTTAGATAAAGAAA+AGG + chr7_3:23194341-23194360 Msa1097710:three_prime_UTR 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG + chr7_3:23194687-23194706 Msa1097710:three_prime_UTR 30.0%
TGACTCGCTTAAATTTATTC+AGG - chr7_3:23194928-23194947 None:intergenic 30.0%
ATTCAATCATCAAACGATGA+TGG + chr7_3:23195048-23195067 Msa1097710:three_prime_UTR 30.0%
CCCATTGTTGCAAAAATAAA+AGG + chr7_3:23195072-23195091 Msa1097710:three_prime_UTR 30.0%
CGATGGAAGAGAAGAAAATT+AGG - chr7_3:23192287-23192306 None:intergenic 35.0%
! GAAATCTGAGAAGCATAGAT+CGG + chr7_3:23192486-23192505 Msa1097710:five_prime_UTR 35.0%
! TTTGATGATTGAAACGGATC+TGG + chr7_3:23192759-23192778 Msa1097710:intron 35.0%
! TTGATGATTGAAACGGATCT+GGG + chr7_3:23192760-23192779 Msa1097710:intron 35.0%
GTTAGTCACAAAAATAGACC+AGG - chr7_3:23193283-23193302 None:intergenic 35.0%
GTGAAGTGTGAATGAACTAA+TGG + chr7_3:23193328-23193347 Msa1097710:intron 35.0%
! AATTTTTCTACTCCACCGTT+AGG - chr7_3:23193443-23193462 None:intergenic 35.0%
GAAGAAAAAAGCAAAGAGGA+GGG - chr7_3:23193708-23193727 None:intergenic 35.0%
TGAAGAAAAAAGCAAAGAGG+AGG - chr7_3:23193709-23193728 None:intergenic 35.0%
GGTTGAAGAAAAAAGCAAAG+AGG - chr7_3:23193712-23193731 None:intergenic 35.0%
TTTGTAGAGAAAGGGAACAA+AGG - chr7_3:23193733-23193752 None:intergenic 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG + chr7_3:23193809-23193828 Msa1097710:three_prime_UTR 35.0%
! AATCTCGTCAATTTGGTCTT+TGG - chr7_3:23193902-23193921 None:intergenic 35.0%
GTTTCAGAATCTCGTCAATT+TGG - chr7_3:23193909-23193928 None:intergenic 35.0%
AACTTATCATCAAAACCTGC+GGG + chr7_3:23194019-23194038 Msa1097710:three_prime_UTR 35.0%
! GGTTTGATGACTAAGAATTC+TGG + chr7_3:23194399-23194418 Msa1097710:three_prime_UTR 35.0%
!! TGACTAAGAATTCTGGAATC+AGG + chr7_3:23194406-23194425 Msa1097710:three_prime_UTR 35.0%
! AAGTCGCATATGTCAGATTT+TGG - chr7_3:23194441-23194460 None:intergenic 35.0%
ACTTGACAAATTTCCTTTGG+AGG + chr7_3:23194680-23194699 Msa1097710:three_prime_UTR 35.0%
TTGTATCCTTTAACCTCCAA+AGG - chr7_3:23194696-23194715 None:intergenic 35.0%
! GAAAGAATCAATGAAGTGCT+TGG + chr7_3:23194723-23194742 Msa1097710:three_prime_UTR 35.0%
CATCATTTCGAACAAAGGTA+CGG - chr7_3:23194770-23194789 None:intergenic 35.0%
!! CGGAGACTGGAATTGATTTT+GGG - chr7_3:23192261-23192280 None:intergenic 40.0%
!! TCGGAGACTGGAATTGATTT+TGG - chr7_3:23192262-23192281 None:intergenic 40.0%
GAAAATTAGGTTTCGGAGAC+TGG - chr7_3:23192274-23192293 None:intergenic 40.0%
TTCTCTCCGTTTCTCTCTTT+CGG + chr7_3:23192311-23192330 Msa1097710:five_prime_UTR 40.0%
GCTATGCAACCAAATCTATG+TGG - chr7_3:23192942-23192961 None:intergenic 40.0%
GAACTAATGGAGTCTAAAGG+TGG + chr7_3:23193341-23193360 Msa1097710:exon 40.0%
!! TTTTTGTACGAAGCACCTCT+CGG + chr7_3:23193395-23193414 Msa1097710:CDS 40.0%
TCTTCAATGATGTAACCGAG+AGG - chr7_3:23193413-23193432 None:intergenic 40.0%
ATTGAAGACGTTCGACCTAA+CGG + chr7_3:23193425-23193444 Msa1097710:CDS 40.0%
AAACCATCCTGAGATTTCCT+GGG + chr7_3:23193611-23193630 Msa1097710:exon 40.0%
TCATGGTCATCTTGACTCAA+AGG - chr7_3:23193774-23193793 None:intergenic 40.0%
ACCATGACAAACTCAGCTAT+CGG + chr7_3:23193787-23193806 Msa1097710:three_prime_UTR 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG + chr7_3:23193796-23193815 Msa1097710:three_prime_UTR 40.0%
! TTTGGTCTTTGGACAATGCT+CGG - chr7_3:23193891-23193910 None:intergenic 40.0%
!! TGAATAAGCTTGACTCGGAT+AGG - chr7_3:23193987-23194006 None:intergenic 40.0%
CACAGCAATGTTTAGACCAT+CGG - chr7_3:23194088-23194107 None:intergenic 40.0%
! GCTGTTCTTGACAGCTATTT+TGG + chr7_3:23194189-23194208 Msa1097710:three_prime_UTR 40.0%
!!! TGACAGCTATTTTGGCAAAC+TGG + chr7_3:23194197-23194216 Msa1097710:three_prime_UTR 40.0%
!!! GACAGCTATTTTGGCAAACT+GGG + chr7_3:23194198-23194217 Msa1097710:three_prime_UTR 40.0%
!!! TATTTTGGCAAACTGGGTTC+CGG + chr7_3:23194204-23194223 Msa1097710:three_prime_UTR 40.0%
AACCAGTCATGCACATTTCA+AGG - chr7_3:23194329-23194348 None:intergenic 40.0%
! CGCATATGTCAGATTTTGGA+AGG - chr7_3:23194437-23194456 None:intergenic 40.0%
GACTTCGAATTTGAACCTTG+CGG + chr7_3:23194456-23194475 Msa1097710:three_prime_UTR 40.0%
ACTTCGAATTTGAACCTTGC+GGG + chr7_3:23194457-23194476 Msa1097710:three_prime_UTR 40.0%
TACTCGATGAACGGAATTGA+AGG + chr7_3:23194480-23194499 Msa1097710:three_prime_UTR 40.0%
ATAGCTGAATCCATCTTCTG+GGG - chr7_3:23194532-23194551 None:intergenic 40.0%
CATAGCTGAATCCATCTTCT+GGG - chr7_3:23194533-23194552 None:intergenic 40.0%
!! TATGCAAGCTTTGAAGCAGT+GGG + chr7_3:23194549-23194568 Msa1097710:three_prime_UTR 40.0%
!! TCTGAACGAACTTGTTGCAA+GGG + chr7_3:23194593-23194612 Msa1097710:three_prime_UTR 40.0%
AATGCAACAGAAAACTCAGC+TGG - chr7_3:23194636-23194655 None:intergenic 40.0%
GAGGTTAAAGGATACAACTG+TGG + chr7_3:23194699-23194718 Msa1097710:three_prime_UTR 40.0%
! AATGAAGTGCTTGGAGAAGA+CGG + chr7_3:23194732-23194751 Msa1097710:three_prime_UTR 40.0%
CGTACCTTTGTTCGAAATGA+TGG + chr7_3:23194768-23194787 Msa1097710:three_prime_UTR 40.0%
TGAGGACCGAAAGAGAGAAA+CGG - chr7_3:23192320-23192339 None:intergenic 45.0%
AGGTGCTTCGTACAAAAAGG+AGG - chr7_3:23193393-23193412 None:intergenic 45.0%
!! GAGAGGTGCTTCGTACAAAA+AGG - chr7_3:23193396-23193415 None:intergenic 45.0%
CAAACCATCCTGAGATTTCC+TGG + chr7_3:23193610-23193629 Msa1097710:exon 45.0%
ATCACAACCCAGGAAATCTC+AGG - chr7_3:23193621-23193640 None:intergenic 45.0%
AGGACAAGAAAAAGGAGAGG+AGG - chr7_3:23193685-23193704 None:intergenic 45.0%
GAAAAAAGCAAAGAGGAGGG+AGG - chr7_3:23193705-23193724 None:intergenic 45.0%
ACCGATAGCTGAGTTTGTCA+TGG - chr7_3:23193791-23193810 None:intergenic 45.0%
TCAACAATGGTGCATTCTGC+TGG - chr7_3:23193931-23193950 None:intergenic 45.0%
CGGCAAGCTTAAGAATTGCA+GGG - chr7_3:23194068-23194087 None:intergenic 45.0%
TCGGCAAGCTTAAGAATTGC+AGG - chr7_3:23194069-23194088 None:intergenic 45.0%
GCAATTCTTAAGCTTGCCGA+TGG + chr7_3:23194069-23194088 Msa1097710:three_prime_UTR 45.0%
AAATCGGTGAGATACACTCG+CGG + chr7_3:23194108-23194127 Msa1097710:three_prime_UTR 45.0%
GTCAAGAACAGCAACTTCCT+CGG - chr7_3:23194181-23194200 None:intergenic 45.0%
CATCATGTAAGCTTGGCTAC+CGG - chr7_3:23194226-23194245 None:intergenic 45.0%
GGTAGCCAAGCTTACATGAT+GGG + chr7_3:23194225-23194244 Msa1097710:three_prime_UTR 45.0%
CATCACCCATCATGTAAGCT+TGG - chr7_3:23194233-23194252 None:intergenic 45.0%
AAGACAGATGCATCTTCAGC+AGG + chr7_3:23194378-23194397 Msa1097710:three_prime_UTR 45.0%
GCATAGCTGAATCCATCTTC+TGG - chr7_3:23194534-23194553 None:intergenic 45.0%
!! CTATGCAAGCTTTGAAGCAG+TGG + chr7_3:23194548-23194567 Msa1097710:three_prime_UTR 45.0%
!! CTCTGAACGAACTTGTTGCA+AGG + chr7_3:23194592-23194611 Msa1097710:three_prime_UTR 45.0%
GCATTGCACATTGATGCGAA+TGG + chr7_3:23194651-23194670 Msa1097710:three_prime_UTR 45.0%
GCAGCCATCATTTCGAACAA+AGG - chr7_3:23194775-23194794 None:intergenic 45.0%
CAACATTTCAGGGTAGACCT+TGG - chr7_3:23194804-23194823 None:intergenic 45.0%
CTCACTCCAGCAACATTTCA+GGG - chr7_3:23194814-23194833 None:intergenic 45.0%
TGAGAACGAGGAGGAAGTTA+AGG + chr7_3:23194836-23194855 Msa1097710:three_prime_UTR 45.0%
GAAACGGAGAGAAAGAGCGA+TGG - chr7_3:23192304-23192323 None:intergenic 50.0%
CAACCCAGGAAATCTCAGGA+TGG - chr7_3:23193617-23193636 None:intergenic 50.0%
GGGAGGACAAGAAAAAGGAG+AGG - chr7_3:23193688-23193707 None:intergenic 50.0%
GAGGAGGGAGGACAAGAAAA+AGG - chr7_3:23193693-23193712 None:intergenic 50.0%
TTCTCTGACCCTGCTGGATT+AGG + chr7_3:23193862-23193881 Msa1097710:three_prime_UTR 50.0%
AAGCAATTTCGTAGTCCCGC+AGG - chr7_3:23194037-23194056 None:intergenic 50.0%
GGAAAAGCTTCGATGAGGGA+AGG - chr7_3:23194160-23194179 None:intergenic 50.0%
CCTCGGAAAAGCTTCGATGA+GGG - chr7_3:23194164-23194183 None:intergenic 50.0%
TCCTCGGAAAAGCTTCGATG+AGG - chr7_3:23194165-23194184 None:intergenic 50.0%
CGGTAGCCAAGCTTACATGA+TGG + chr7_3:23194224-23194243 Msa1097710:three_prime_UTR 50.0%
TGCTAAGCTAGACGCTTCAC+CGG + chr7_3:23194290-23194309 Msa1097710:three_prime_UTR 50.0%
TCAAGGCCATAGACAGCTTC+CGG - chr7_3:23194312-23194331 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG + chr7_3:23194324-23194343 Msa1097710:three_prime_UTR 50.0%
!! TTCTGGGGTGACATGGATAG+TGG - chr7_3:23194517-23194536 None:intergenic 50.0%
ATCCATGTCACCCCAGAAGA+TGG + chr7_3:23194519-23194538 Msa1097710:three_prime_UTR 50.0%
!! ATCCATCTTCTGGGGTGACA+TGG - chr7_3:23194524-23194543 None:intergenic 50.0%
ATGATGGCTGCTCATCTCCA+AGG + chr7_3:23194784-23194803 Msa1097710:three_prime_UTR 50.0%
GGTCTACCCTGAAATGTTGC+TGG + chr7_3:23194805-23194824 Msa1097710:three_prime_UTR 50.0%
CCTCACTCCAGCAACATTTC+AGG - chr7_3:23194815-23194834 None:intergenic 50.0%
CCTGAAATGTTGCTGGAGTG+AGG + chr7_3:23194812-23194831 Msa1097710:three_prime_UTR 50.0%
GAAGACGTTCGACCTAACGG+TGG + chr7_3:23193428-23193447 Msa1097710:CDS 55.0%
! GGTGTTTTCTCTGACCCTGC+TGG + chr7_3:23193856-23193875 Msa1097710:three_prime_UTR 55.0%
GGTCTTTGGACAATGCTCGG+AGG - chr7_3:23193888-23193907 None:intergenic 55.0%
CGCGGAAGCTTCATCTTTCC+TGG + chr7_3:23194126-23194145 Msa1097710:three_prime_UTR 55.0%
TGAGGGAAGGATTGAGCTCC+AGG - chr7_3:23194147-23194166 None:intergenic 55.0%
! CCCTCATCGAAGCTTTTCCG+AGG + chr7_3:23194161-23194180 Msa1097710:three_prime_UTR 55.0%
GCTTCACCGGAAGCTGTCTA+TGG + chr7_3:23194303-23194322 Msa1097710:three_prime_UTR 55.0%
CCTTGCGGGTACTCGATGAA+CGG + chr7_3:23194471-23194490 Msa1097710:three_prime_UTR 55.0%
CTGGAGTGAGGATGAGAACG+AGG + chr7_3:23194824-23194843 Msa1097710:three_prime_UTR 55.0%
GAGTGAGGATGAGAACGAGG+AGG + chr7_3:23194827-23194846 Msa1097710:three_prime_UTR 55.0%
CTCGGAGGCCTAATCCAGCA+GGG - chr7_3:23193873-23193892 None:intergenic 60.0%
CCGTTCATCGAGTACCCGCA+AGG - chr7_3:23194474-23194493 None:intergenic 60.0%
GCTCGGAGGCCTAATCCAGC+AGG - chr7_3:23193874-23193893 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 23192256 23195096 23192256 ID=Msa1097710;Name=Msa1097710
chr7_3 mRNA 23192256 23195096 23192256 ID=Msa1097710-mRNA-1;Parent=Msa1097710;Name=Msa1097710-mRNA-1;_AED=0.12;_eAED=0.12;_QI=191|1|1|1|0.25|0|5|1448|52
chr7_3 exon 23192256 23192354 23192256 ID=Msa1097710-mRNA-1:exon:5137;Parent=Msa1097710-mRNA-1
chr7_3 exon 23192455 23192528 23192455 ID=Msa1097710-mRNA-1:exon:5138;Parent=Msa1097710-mRNA-1
chr7_3 exon 23193329 23193484 23193329 ID=Msa1097710-mRNA-1:exon:5139;Parent=Msa1097710-mRNA-1
chr7_3 exon 23193602 23193719 23193602 ID=Msa1097710-mRNA-1:exon:5140;Parent=Msa1097710-mRNA-1
chr7_3 exon 23193746 23195096 23193746 ID=Msa1097710-mRNA-1:exon:5141;Parent=Msa1097710-mRNA-1
chr7_3 five_prime_UTR 23192256 23192354 23192256 ID=Msa1097710-mRNA-1:five_prime_utr;Parent=Msa1097710-mRNA-1
chr7_3 five_prime_UTR 23192455 23192528 23192455 ID=Msa1097710-mRNA-1:five_prime_utr;Parent=Msa1097710-mRNA-1
chr7_3 five_prime_UTR 23193329 23193346 23193329 ID=Msa1097710-mRNA-1:five_prime_utr;Parent=Msa1097710-mRNA-1
chr7_3 CDS 23193347 23193484 23193347 ID=Msa1097710-mRNA-1:cds;Parent=Msa1097710-mRNA-1
chr7_3 CDS 23193602 23193622 23193602 ID=Msa1097710-mRNA-1:cds;Parent=Msa1097710-mRNA-1
chr7_3 three_prime_UTR 23193623 23193719 23193623 ID=Msa1097710-mRNA-1:three_prime_utr;Parent=Msa1097710-mRNA-1
chr7_3 three_prime_UTR 23193746 23195096 23193746 ID=Msa1097710-mRNA-1:three_prime_utr;Parent=Msa1097710-mRNA-1
Gene Sequence

>Msa1097710

ATGGAGTCTAAAGGTGGTAAAAAGAAGTCTAGCAGTAGTAGTTCCTCCTTTTTGTACGAAGCACCTCTCGGTTACATCATTGAAGACGTTCGACCTAACGGTGGAGTAGAAAAATTCAAATCAGCTGATTACTCAAACTGCACTCGCAAACCATCCTGA
Protein sequence

>Msa1097710

MESKGGKKKSSSSSSSFLYEAPLGYIIEDVRPNGGVEKFKSADYSNCTRKPS*