AlfalfaGEDB | Msa0472420

M. sativa cultivar zhongmu-4 / Msa0472420

KEGG: -
GO: GO:0001067 GO:0002230 GO:0002237 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0009814 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016020 GO:0016032 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0033554 GO:0042221 GO:0042493 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0043900 GO:0044212 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0098542 GO:0140110 GO:1900101 GO:1900103 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905897 GO:1905898 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0472420	XP_003602412.1	93.243	74	5	0	748	821	509	582	2.85e-30	139
Msa0472420	XP_003602412.1	95.855	579	8	4	1	564	1	578	0.0	1145
Msa0472420	XP_003602412.1	97.973	148	3	0	599	746	14	161	2.93e-95	322

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0472420	sp\|F4JN35\|NTL9_ARATH	40.161	498	247	14	14	509	1	449	3.09e-90	298
Msa0472420	sp\|F4JN35\|NTL9_ARATH	76.351	148	35	0	599	746	1	148	3.48e-76	260

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0472420	G7J930	93.243	74	5	0	748	821	509	582	1.36e-30	139
Msa0472420	G7J930	95.855	579	8	4	1	564	1	578	0.0	1145
Msa0472420	G7J930	97.973	148	3	0	599	746	14	161	1.40e-95	322

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TFs/TRs:

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Gene ID	Type	Classification
Msa0472420	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0426000	Msa0472420	0.871501	6.511809e-67	-8.615850e-47
Msa0426220	Msa0472420	0.852520	4.374156e-61	-8.615850e-47
Msa0472420	Msa0516950	0.871203	8.172957e-67	-8.615850e-47
Msa0472420	Msa1130470	0.802924	4.453465e-49	-8.615850e-47
Msa0472420	Msa1218290	0.801590	8.379909e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0472420	MtrunA17_Chr3g0128151	95.855	579	8	4	1	564	1	578	0.0	1145
Msa0472420	MtrunA17_Chr3g0128151	97.973	148	3	0	599	746	14	161	2.70e-99	322
Msa0472420	MtrunA17_Chr3g0128151	93.243	74	5	0	748	821	509	582	2.62e-34	139
Msa0472420	MtrunA17_Chr5g0428991	47.344	640	238	17	1	561	1	620	8.55e-174	517
Msa0472420	MtrunA17_Chr5g0428991	84.564	149	23	0	598	746	16	164	3.68e-88	293
Msa0472420	MtrunA17_Chr3g0128111	82.212	208	25	2	25	227	45	245	6.72e-119	361
Msa0472420	MtrunA17_Chr3g0128111	89.130	138	15	0	610	747	45	182	4.92e-88	280
Msa0472420	MtrunA17_Chr6g0481091	46.491	228	112	3	17	236	1	226	7.77e-58	198
Msa0472420	MtrunA17_Chr6g0481091	55.414	157	59	2	607	763	6	151	4.51e-52	182
Msa0472420	MtrunA17_Chr3g0109821	61.688	154	58	1	21	173	5	158	2.25e-56	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0472420	AT4G35580.1	40.161	498	247	14	14	509	1	449	3.14e-91	298
Msa0472420	AT4G35580.1	76.351	148	35	0	599	746	1	148	3.53e-77	260
Msa0472420	AT4G35580.2	40.161	498	247	14	14	509	1	449	1.27e-90	297
Msa0472420	AT4G35580.2	76.351	148	35	0	599	746	1	148	3.87e-77	261
Msa0472420	AT4G35580.3	40.161	498	247	14	14	509	1	449	1.80e-90	297
Msa0472420	AT4G35580.3	76.351	148	35	0	599	746	1	148	4.73e-77	261
Msa0472420	AT1G33060.1	63.768	207	74	1	7	212	9	215	7.82e-86	288
Msa0472420	AT1G33060.1	69.939	163	43	1	590	746	1	163	2.36e-72	251
Msa0472420	AT1G33060.2	63.768	207	74	1	7	212	9	215	8.33e-86	288
Msa0472420	AT1G33060.2	69.939	163	43	1	590	746	1	163	2.39e-72	251

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Find 287 sgRNAs with CRISPR-Local

Find 978 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCTGGCATATCCCA+GGG	0.626987	3_3:-74828478	None:intergenic
AAAGTTAATGGCAGAATGCA+TGG	0.551199	3_3:+74833597	Msa0472420:CDS
AAATCTGGAACCATCTTGAT+TGG	0.406417	3_3:+74829383	Msa0472420:CDS
AAATCTGGAACCATCTTGAT+TGG	0.406417	3_3:+74835903	Msa0472420:CDS
AACAAATCATGGATACTGGA+AGG	0.619020	3_3:+74829337	Msa0472420:CDS
AACAAATCATGGATACTGGA+AGG	0.619020	3_3:+74835857	Msa0472420:CDS
AACAAGATTGGTTGGTTTCA+GGG	0.382339	3_3:+74839294	Msa0472420:CDS
AACGACGGTGTTGTCGCAAA+AGG	0.438910	3_3:-74830913	None:intergenic
AAGATTGAACATGTCTCATG+TGG	0.575379	3_3:+74831198	Msa0472420:CDS
AAGCATAAAATCAGAATCAA+CGG	0.567827	3_3:-74828197	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAGTAAAGTAAAAGAAGG+AGG	-	chr3_3:74828110-74828129	None:intergenic	30.0%
GGAATAATTCAGAGGATTTA+AGG	-	chr3_3:74828179-74828198	None:intergenic	30.0%
GAGAAATTGATGTCTGTAAA+TGG	+	chr3_3:74828452-74828471	Msa0472420:CDS	30.0%
CAGAACTTATGAAAATAAGC+CGG	+	chr3_3:74828980-74828999	Msa0472420:intron	30.0%
TCAAGTGCTTATCATATAAG+TGG	-	chr3_3:74829076-74829095	None:intergenic	30.0%
AAGGATCGTAAAATCAAATC+TGG	+	chr3_3:74829368-74829387	Msa0472420:CDS	30.0%
AGAAGAAATACAATCTGATC+CGG	+	chr3_3:74829745-74829764	Msa0472420:CDS	30.0%
TTATACTTGATATTTCCTGC+AGG	+	chr3_3:74830368-74830387	Msa0472420:intron	30.0%
ATGTATTATAACCCGAAAGA+CGG	+	chr3_3:74830414-74830433	Msa0472420:CDS	30.0%
TGTCCTTAACATTTAACATG+GGG	-	chr3_3:74830641-74830660	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	74827987	74841799	74827987	ID=Msa0472420;Name=Msa0472420
chr3_3	mRNA	74827987	74841799	74827987	ID=Msa0472420-mRNA-1;Parent=Msa0472420;Name=Msa0472420-mRNA-1;_AED=0.35;_eAED=0.35;_QI=302\|0.53\|0.31\|1\|0.46\|0.56\|16\|264\|885
chr3_3	exon	74827987	74828493	74827987	ID=Msa0472420-mRNA-1:exon:19194;Parent=Msa0472420-mRNA-1
chr3_3	exon	74829246	74829523	74829246	ID=Msa0472420-mRNA-1:exon:19195;Parent=Msa0472420-mRNA-1
chr3_3	exon	74829632	74829778	74829632	ID=Msa0472420-mRNA-1:exon:19196;Parent=Msa0472420-mRNA-1
chr3_3	exon	74829794	74829937	74829794	ID=Msa0472420-mRNA-1:exon:19197;Parent=Msa0472420-mRNA-1
chr3_3	exon	74830390	74830543	74830390	ID=Msa0472420-mRNA-1:exon:19198;Parent=Msa0472420-mRNA-1
chr3_3	exon	74830568	74830704	74830568	ID=Msa0472420-mRNA-1:exon:19199;Parent=Msa0472420-mRNA-1
chr3_3	exon	74830868	74831036	74830868	ID=Msa0472420-mRNA-1:exon:19200;Parent=Msa0472420-mRNA-1
chr3_3	exon	74831043	74831287	74831043	ID=Msa0472420-mRNA-1:exon:19201;Parent=Msa0472420-mRNA-1
chr3_3	exon	74831369	74831581	74831369	ID=Msa0472420-mRNA-1:exon:19202;Parent=Msa0472420-mRNA-1
chr3_3	exon	74833594	74833695	74833594	ID=Msa0472420-mRNA-1:exon:19203;Parent=Msa0472420-mRNA-1
chr3_3	exon	74835291	74835456	74835291	ID=Msa0472420-mRNA-1:exon:19204;Parent=Msa0472420-mRNA-1
chr3_3	exon	74835766	74836043	74835766	ID=Msa0472420-mRNA-1:exon:19205;Parent=Msa0472420-mRNA-1
chr3_3	exon	74837889	74838101	74837889	ID=Msa0472420-mRNA-1:exon:19206;Parent=Msa0472420-mRNA-1
chr3_3	exon	74839254	74839422	74839254	ID=Msa0472420-mRNA-1:exon:19207;Parent=Msa0472420-mRNA-1
chr3_3	exon	74840022	74840148	74840022	ID=Msa0472420-mRNA-1:exon:19208;Parent=Msa0472420-mRNA-1
chr3_3	exon	74841625	74841799	74841625	ID=Msa0472420-mRNA-1:exon:19209;Parent=Msa0472420-mRNA-1
chr3_3	five_prime_UTR	74827987	74828288	74827987	ID=Msa0472420-mRNA-1:five_prime_utr;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74828289	74828493	74828289	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74829246	74829523	74829246	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74829632	74829778	74829632	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74829794	74829937	74829794	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74830390	74830543	74830390	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74830568	74830704	74830568	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74830868	74831036	74830868	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74831043	74831287	74831043	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74831369	74831581	74831369	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74833594	74833695	74833594	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74835291	74835456	74835291	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74835766	74836043	74835766	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74837889	74838101	74837889	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74839254	74839422	74839254	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	CDS	74840022	74840059	74840022	ID=Msa0472420-mRNA-1:cds;Parent=Msa0472420-mRNA-1
chr3_3	three_prime_UTR	74840060	74840148	74840060	ID=Msa0472420-mRNA-1:three_prime_utr;Parent=Msa0472420-mRNA-1
chr3_3	three_prime_UTR	74841625	74841799	74841625	ID=Msa0472420-mRNA-1:three_prime_utr;Parent=Msa0472420-mRNA-1

Gene Sequence

>Msa0472420

ATGGGTTCTCTTGATTGTGTTCCATCGGTCGATGATGGGATGGCGGTGTTGTCTTTGAATTCGCTTCCGTTAGGGTTTCGATTCCGACCTACGGACGAGGAACTTATCGATTACTACTTACGTTCGAAGATCAATGGAAATGGTGACGAGGTTTGGGTTATCCGAGAAATTGATGTCTGTAAATGGGAACCCTGGGATATGCCAGATTTGTCAGTGGTACGAAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCTCAGGATCGCAAGTATCCAAACGGACATCGATTGAACAGAGCAACAAATCATGGATACTGGAAGGCAACAGGGAAGGATCGTAAAATCAAATCTGGAACCATCTTGATTGGAATGAAGAAGACTTTAGTTTTCTACAGTGGTCGTGCACCCAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCCTCAAGGAGCTTGATGGTACCAACCCGGGACAGAATCCATATGTCCTCTGTCGATTATTTAAGAAAAACGATGAGAGCATTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAACTACTTCAGCTCCTTTGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATCCGGCTCCTATTACAGTCACGGAAGAGGATAAGCAGCTGGCTGTTATCCCTGATATCTCTGAGGAAACCATATCTAATGCTGTAACCTCGGTTGATTACCATAGCGATGGATATGATGCTCATGATGTCCAAAATCAAATTGCAAAACTAGCTGCAGAGGAGGATCAGGCGTTGAACTTTGACATGTATTATAACCCGAAAGACGGTCTATTGTTAGATGACAGATTATTCTCCCCACCTTTGGTGCATATGCCACAAGAATTTCACTATCAAGCGAACAATGAATCAGATGGTCGATGTGGGCTTCAGTATGACTTTTTAAATTATGATCTTAACTGGGATCAAATTCCCTGTGAGGTGTCCGTTAGTCACCAGCCGAACTTCCCCATGTTAAATGTTAAGGACAGTGGTTCAGGAAGCAACTCGGATGTGGAAGTAGCCAATATGACTGGTATGCAAGCTGCTTATCCTCACGAGGCAATTGACAGAAGGATTCCTTTTGCGACAACACCGTCGTTTAGCCACACCTTTGATTACAGTGGTGATGATCAAAAGAGCAATGTTGTTTTATTACAAAACAATTTCCAGACGGCTTTTCCATCGGATGTTAATAATACTGTGTACAATGCCGTCAATGGATATGAGCAACCAAGGACCTATAATACAATTATGAGCAGTGAAAGTGGAATTGTAAGGAGGGCCCGGCCAGCACGAGACGAACAATTTAAGACAAATCCGATGCAAGGTACTGCTCAAAGGAGAATTCGGTTGTCAAAGATTGAACATGTCTCATGTGGGATGGTTAAGGTTAAAGATGAGAGTTGTACACAAGAACAACATAATTCAAAACCGATTATTGCTGTGGAGAAGAAAGCTGCGGAAAATCATGCTTCGGATGATGAAAGTGCTATTTGTACTAATCATGCATGTAAACAGAGGAAGGTTCACAAGTCAATTGCAAATGCAAGCAAGGGGTTAAGAAATTTTTTATTGCTAGGAAGAGCACCTTTCAGATCAAAGACTTCCTCCAACTGTGCTCTGTGGTCTTCTGTTTTTGTAGTTTCTGCATCTGTGCTGAGCAAAGTTAATGGCAGAATGCATGGTTGTGGAGATGATGCTCATGCTACTATGCTACTTGGGGCTGCAAAGTTGCTCAATCGGCGCAAAAATAAGCTTAAGATGGCGACGTTTTCTCTGAATTCGCTTCCGCTAGGGTTCCGATTCCGACCTACGGATGAGGAACTTATAGATTACTACCTTCGTTCAAAGATTAACGGCAATGGTGACGAGGTTCAGGTTATCCGAGAAATCGATGTCTGCAAATGGGAACCCTGGGATATGCCCGATTTGTCAGTGGTACGAAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCTCAGGATCGCAAGTATCCAAACGGACATCGATTGAACAGAGCAACAAATCATGGATACTGGAAGGCAACAGGGAAGGATCGTAAAATCAAATCTGGAACCATCTTGATTGGAATGAAGAAGACTTTAGTTTTCTACAGTGGTCGTGCACCCAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATCGTCCCACCCTCAAGGAGCTTGATGGTACCAACCCGGGACAGGAGAAGAAAGCTGCGGAAAATCATGCTTCGGATGATGAAAGTGCCATTTGTACTAATCATGCATGTAAACAGAGGAAGGTTCACAAGTCAATTGCAAATGCAAGCAAGGGGTTAAGAAATTTTTTATTGCTAGGAAGAGCACCTTTCAGATCAAAGACTTCCTCCAACTGTGCTCTGTGGTCTTCTGTTTTTGTAGTTTCTGCATCTGTGCTGCATACGTATGCTCAAGAGATTGTAACTTCACCCCAAAAAGAACAAGATTGGTTGGTTTCAGGGAGAAGGGAGATTCATCAACACCCAGAATTAGCCTTTCAAGAAAATACCAGTGCTTTTATACGCAAGGAACTTGACATACCTTATACATACCCAGTCTGCCAAAACAGAGCGCTTGCTGATGAGGGAATTCAAGAGAAAAGTTGA

Protein sequence

>Msa0472420

MGSLDCVPSVDDGMAVLSLNSLPLGFRFRPTDEELIDYYLRSKINGNGDEVWVIREIDVCKWEPWDMPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGTILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESIEVSNCGEVEQTTSAPLAANYSPEEIQSDPAPITVTEEDKQLAVIPDISEETISNAVTSVDYHSDGYDAHDVQNQIAKLAAEEDQALNFDMYYNPKDGLLLDDRLFSPPLVHMPQEFHYQANNESDGRCGLQYDFLNYDLNWDQIPCEVSVSHQPNFPMLNVKDSGSGSNSDVEVANMTGMQAAYPHEAIDRRIPFATTPSFSHTFDYSGDDQKSNVVLLQNNFQTAFPSDVNNTVYNAVNGYEQPRTYNTIMSSESGIVRRARPARDEQFKTNPMQGTAQRRIRLSKIEHVSCGMVKVKDESCTQEQHNSKPIIAVEKKAAENHASDDESAICTNHACKQRKVHKSIANASKGLRNFLLLGRAPFRSKTSSNCALWSSVFVVSASVLSKVNGRMHGCGDDAHATMLLGAAKLLNRRKNKLKMATFSLNSLPLGFRFRPTDEELIDYYLRSKINGNGDEVQVIREIDVCKWEPWDMPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGTILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQEKKAAENHASDDESAICTNHACKQRKVHKSIANASKGLRNFLLLGRAPFRSKTSSNCALWSSVFVVSASVLHTYAQEIVTSPQKEQDWLVSGRREIHQHPELAFQENTSAFIRKELDIPYTYPVCQNRALADEGIQEKS*