AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130470 MtrunA17_Chr7g0275661 98.992 595 6 0 1 595 1 595 0.0 1212
Msa1130470 MtrunA17_Chr8g0346901 70.519 597 162 5 1 590 1 590 0.0 845
Msa1130470 MtrunA17_Chr3g0126781 56.966 567 221 7 35 591 25 578 0.0 641
Msa1130470 MtrunA17_Chr8g0388301 57.692 572 217 9 37 590 27 591 0.0 638
Msa1130470 MtrunA17_Chr5g0396531 55.478 575 226 10 29 590 23 580 0.0 629
Msa1130470 MtrunA17_Chr8g0366091 39.189 296 150 6 266 547 146 425 1.83e-59 209
Msa1130470 MtrunA17_Chr5g0420771 40.000 300 146 7 266 547 148 431 8.29e-59 207
Msa1130470 MtrunA17_Chr7g0255481 38.487 304 159 6 258 547 76 365 5.32e-57 198
Msa1130470 MtrunA17_Chr7g0220391 40.214 281 135 8 284 547 162 426 5.24e-55 197
Msa1130470 MtrunA17_Chr7g0274921 32.075 159 101 5 36 193 2 154 1.39e-14 73.6
Msa1130470 MtrunA17_Chr7g0274921 31.646 158 101 5 37 193 79 230 4.98e-14 72.0
Msa1130470 MtrunA17_Chr6g0475961 32.051 156 99 5 37 191 4 153 1.68e-14 72.4
Msa1130470 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 1 152 3.99e-14 72.4
Msa1130470 MtrunA17_Chr1g0181441 31.646 158 101 5 37 193 77 228 3.99e-14 72.4
Msa1130470 MtrunA17_Chr4g0041751 31.013 158 102 5 37 193 1 152 4.79e-14 72.0
Msa1130470 MtrunA17_Chr4g0037241 33.333 135 84 4 37 170 1 130 1.71e-13 68.6
Msa1130470 MtrunA17_Chr5g0444101 33.333 135 84 4 37 170 1 130 1.71e-13 68.6
Msa1130470 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 9 160 2.21e-13 72.4
Msa1130470 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 85 236 2.21e-13 72.4
Msa1130470 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 161 312 2.21e-13 72.4
Msa1130470 MtrunA17_Chr8g0377821 31.646 158 101 5 37 193 237 388 2.21e-13 72.4
Msa1130470 MtrunA17_Chr4g0046801 31.447 159 102 5 36 193 3 155 2.31e-13 72.8
Msa1130470 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 80 231 3.38e-13 72.0
Msa1130470 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 156 307 3.38e-13 72.0
Msa1130470 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 232 383 3.38e-13 72.0
Msa1130470 MtrunA17_Chr4g0046801 31.646 158 101 5 37 193 308 459 3.38e-13 72.0
Msa1130470 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 5 156 2.89e-13 72.4
Msa1130470 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 81 232 2.89e-13 72.4
Msa1130470 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 157 308 2.89e-13 72.4
Msa1130470 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 233 384 2.89e-13 72.4
Msa1130470 MtrunA17_Chr4g0041641 31.646 158 101 5 37 193 309 460 2.89e-13 72.4
Msa1130470 MtrunA17_Chr4g0048591 31.447 159 102 5 36 193 3 155 3.05e-13 72.4
Msa1130470 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 232 383 3.83e-13 72.0
Msa1130470 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 80 231 4.44e-13 72.0
Msa1130470 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 156 307 4.44e-13 72.0
Msa1130470 MtrunA17_Chr4g0048591 31.646 158 101 5 37 193 384 535 4.44e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 4 155 4.10e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 80 231 4.10e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 156 307 4.10e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 232 383 4.10e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 308 459 4.10e-13 72.0
Msa1130470 MtrunA17_Chr8g0342711 31.646 158 101 5 37 193 384 535 4.10e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 1 152 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 77 228 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 153 304 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 229 380 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 305 456 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0041701 31.646 158 101 5 37 193 381 532 4.26e-13 72.0
Msa1130470 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 80 231 5.30e-13 72.0
Msa1130470 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 156 307 5.30e-13 72.0
Msa1130470 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 368 519 5.30e-13 72.0
Msa1130470 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 444 595 5.30e-13 72.0
Msa1130470 MtrunA17_Chr4g0046831 31.646 158 101 5 37 193 4 155 5.98e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130470 AT2G46500.1 58.615 592 210 8 1 588 1 561 0.0 687
Msa1130470 AT2G46500.2 58.615 592 210 8 1 588 1 561 0.0 687
Msa1130470 AT5G24240.1 55.160 562 225 8 34 589 30 570 0.0 616
Msa1130470 AT5G24240.2 55.160 562 225 8 34 589 30 570 0.0 616
Msa1130470 AT2G46500.3 51.773 423 170 7 1 419 1 393 2.37e-142 419
Msa1130470 AT2G03890.1 38.739 333 168 9 254 566 139 455 4.05e-59 209
Msa1130470 AT1G13640.1 39.404 302 146 7 267 547 144 429 5.00e-57 202
Msa1130470 AT1G13640.2 39.404 302 146 7 267 547 144 429 5.00e-57 202
Msa1130470 AT3G56600.2 36.503 326 174 7 257 562 72 384 1.50e-56 199
Msa1130470 AT3G56600.1 36.503 326 174 7 257 562 75 387 1.66e-56 199
Msa1130470 AT3G56600.3 36.503 326 174 7 257 562 75 387 1.66e-56 199
Msa1130470 AT2G40850.1 36.716 335 177 8 259 572 94 414 9.35e-56 198
Msa1130470 AT1G26270.1 38.333 300 152 8 265 547 146 429 1.17e-55 199
Msa1130470 AT2G03890.2 41.304 230 104 6 334 547 99 313 7.46e-45 167
Msa1130470 AT1G27570.1 30.806 211 128 5 344 543 396 599 2.74e-22 101
Msa1130470 AT1G27570.2 30.806 211 128 5 344 543 387 590 3.17e-22 101
Msa1130470 AT4G05320.7 32.051 156 99 5 37 191 1 150 7.71e-15 72.8
Msa1130470 AT4G05050.4 32.051 156 99 5 37 191 1 150 7.71e-15 72.8
Msa1130470 AT2G35635.1 32.051 156 99 5 37 191 1 150 3.52e-14 70.9
Msa1130470 AT4G02890.2 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130470 AT4G02890.2 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130470 AT4G02890.1 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130470 AT4G02890.1 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130470 AT4G05050.2 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130470 AT4G05050.2 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130470 AT4G05050.1 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130470 AT4G05050.1 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130470 AT4G05050.3 31.646 158 101 5 37 193 1 152 5.87e-14 72.0
Msa1130470 AT4G05050.3 31.646 158 101 5 37 193 77 228 5.87e-14 72.0
Msa1130470 AT1G31340.1 32.051 156 99 5 37 191 1 150 7.24e-14 70.1
Msa1130470 AT3G43950.1 34.815 135 79 4 347 478 78 206 8.47e-14 71.2
Msa1130470 AT5G03240.3 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130470 AT5G03240.3 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130470 AT5G03240.3 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130470 AT5G03240.2 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130470 AT5G03240.2 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130470 AT5G03240.2 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130470 AT5G03240.1 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130470 AT5G03240.1 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130470 AT5G03240.1 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130470 AT5G20620.2 31.646 158 101 5 37 193 1 152 1.75e-13 72.0
Msa1130470 AT5G20620.2 31.646 158 101 5 37 193 77 228 1.75e-13 72.0
Msa1130470 AT5G20620.2 31.646 158 101 5 37 193 153 304 1.75e-13 72.0
Msa1130470 AT4G05320.5 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130470 AT4G05320.5 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130470 AT4G05320.5 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130470 AT4G05320.8 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130470 AT4G05320.8 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130470 AT4G05320.8 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130470 AT4G02890.3 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130470 AT4G02890.3 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130470 AT4G02890.3 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130470 AT4G02890.4 31.646 158 101 5 37 193 1 152 1.76e-13 72.0
Msa1130470 AT4G02890.4 31.646 158 101 5 37 193 77 228 1.76e-13 72.0
Msa1130470 AT4G02890.4 31.646 158 101 5 37 193 153 304 1.76e-13 72.0
Msa1130470 AT1G65350.1 32.278 158 99 5 37 193 1 151 2.15e-13 72.0
Msa1130470 AT1G65350.1 29.114 158 104 5 37 193 77 227 2.23e-11 65.9
Msa1130470 AT1G55060.1 29.651 172 104 5 33 193 63 228 2.26e-13 70.5
Msa1130470 AT5G20620.1 31.646 158 101 5 37 193 1 152 3.28e-13 72.0
Msa1130470 AT5G20620.1 31.646 158 101 5 37 193 77 228 3.28e-13 72.0
Msa1130470 AT5G20620.1 31.646 158 101 5 37 193 153 304 3.28e-13 72.0
Msa1130470 AT5G20620.1 31.646 158 101 5 37 193 229 380 3.28e-13 72.0
Msa1130470 AT4G05320.1 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130470 AT4G05320.1 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130470 AT4G05320.1 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130470 AT4G05320.1 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130470 AT4G05320.6 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130470 AT4G05320.6 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130470 AT4G05320.6 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130470 AT4G05320.6 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130470 AT4G05320.3 31.646 158 101 5 37 193 1 152 3.60e-13 72.0
Msa1130470 AT4G05320.3 31.646 158 101 5 37 193 77 228 3.60e-13 72.0
Msa1130470 AT4G05320.3 31.646 158 101 5 37 193 153 304 3.60e-13 72.0
Msa1130470 AT4G05320.3 31.646 158 101 5 37 193 229 380 3.60e-13 72.0
Msa1130470 AT4G05320.2 31.646 158 101 5 37 193 1 152 4.58e-13 72.0
Msa1130470 AT4G05320.2 31.646 158 101 5 37 193 77 228 4.58e-13 72.0
Msa1130470 AT4G05320.2 31.646 158 101 5 37 193 153 304 4.58e-13 72.0
Msa1130470 AT4G05320.2 31.646 158 101 5 37 193 229 380 4.58e-13 72.0
Msa1130470 AT4G05320.2 31.646 158 101 5 37 193 305 456 4.58e-13 72.0
Msa1130470 AT4G05320.4 31.646 158 101 5 37 193 1 152 4.58e-13 72.0
Msa1130470 AT4G05320.4 31.646 158 101 5 37 193 77 228 4.58e-13 72.0
Msa1130470 AT4G05320.4 31.646 158 101 5 37 193 153 304 4.58e-13 72.0
Msa1130470 AT4G05320.4 31.646 158 101 5 37 193 229 380 4.58e-13 72.0
Msa1130470 AT4G05320.4 31.646 158 101 5 37 193 305 456 4.58e-13 72.0
Msa1130470 AT5G37640.1 29.518 166 105 5 52 211 19 178 1.24e-11 66.6

Find 156 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCAGCTTGTTGAATTT+AGG 0.133656 7_3:-82620174 Msa1130470:five_prime_UTR
AACTTGCGACGTCCACTTAT+TGG 0.166902 7_3:+82618748 None:intergenic
GAGGTAAAATTGGTCTCTTT+TGG 0.196561 7_3:-82620127 Msa1130470:five_prime_UTR
CATACTCCTACCTAGCTTAA+AGG 0.229628 7_3:+82620037 None:intergenic
AGCTTCAGTGATTCGAAATA+TGG 0.237481 7_3:-82619025 Msa1130470:CDS
TTTGATCTTTGAGGTAAAAT+TGG 0.241624 7_3:-82620137 Msa1130470:five_prime_UTR
TCTCTATCGGGAAGCTTTCT+TGG 0.255627 7_3:+82619090 None:intergenic
GGAAGTTGCTGCTTATGTTT+TGG 0.257385 7_3:-82618776 Msa1130470:CDS
AGTGGACGTCGCAAGTTATT+TGG 0.265630 7_3:-82618742 Msa1130470:CDS
CAAGCGAAGGATTGCTAAAA+AGG 0.268222 7_3:-82619394 Msa1130470:CDS
TGCATCTGTTTGTTCGAAAA+AGG 0.284524 7_3:-82619263 Msa1130470:CDS
TTATCAGCTTGTTGAATTTA+GGG 0.288456 7_3:-82620173 Msa1130470:five_prime_UTR
TTCAATATTTCTCTCGTTCT+CGG 0.303158 7_3:-82619703 Msa1130470:CDS
CCGTATTCTGCTGAAACTAT+TGG 0.313231 7_3:-82617964 Msa1130470:CDS
AGTGTAAACAAAGGTTATTT+TGG 0.322758 7_3:-82619874 Msa1130470:five_prime_UTR
CAGAATACGGCTGGCGAGCT+TGG 0.326056 7_3:+82617977 None:intergenic
GATACTCTACTTAAGGATTA+TGG 0.332495 7_3:-82619543 Msa1130470:CDS
ATCTTCTAATTTGATCTTTG+AGG 0.333431 7_3:-82620146 Msa1130470:five_prime_UTR
CCTTCACCGTCTAATGATAA+TGG 0.336135 7_3:+82618838 None:intergenic
AGAATACGGCTGGCGAGCTT+GGG 0.336231 7_3:+82617978 None:intergenic
GCATTTGAGTCTGTTCTTCC+TGG 0.336546 7_3:-82617730 Msa1130470:CDS
AAGACAAGTGAGATGGTAAA+TGG 0.339437 7_3:+82619742 None:intergenic
ATGAGTGTCGCTTTAGGCTT+TGG 0.343024 7_3:-82617466 Msa1130470:three_prime_UTR
AGCAGGAACTTGTGTGTAAT+GGG 0.346405 7_3:-82619347 Msa1130470:CDS
AGCTGTGAAGATATCGGTCC+TGG 0.357604 7_3:-82618592 Msa1130470:CDS
ATCAATGTCAAAACATCTTC+GGG 0.363524 7_3:-82619465 Msa1130470:CDS
AAAGTTTGAGAGGGTAAAGT+TGG 0.364705 7_3:-82617328 Msa1130470:three_prime_UTR
TACTTTATGCTTGATTCAAC+TGG 0.367790 7_3:-82618931 Msa1130470:CDS
GGACAATGACCAGTCTGTTC+TGG 0.368416 7_3:-82618470 Msa1130470:CDS
TTGATATCTGCAATAGTAAC+AGG 0.371471 7_3:-82617619 Msa1130470:three_prime_UTR
TTCAAAATGAGTGTCGCTTT+AGG 0.377610 7_3:-82617472 Msa1130470:three_prime_UTR
TAACCATCCAGGAGACTTGA+TGG 0.377723 7_3:-82618656 Msa1130470:CDS
ATGGAAGACTCTCACACCTT+TGG 0.377727 7_3:+82619619 None:intergenic
CGTATTCTGCTGAAACTATT+GGG 0.383361 7_3:-82617963 Msa1130470:CDS
GTACCTTCTGCAGATCCTAT+TGG 0.386108 7_3:+82618964 None:intergenic
GGTTGAGCTGTTTGTTATGA+TGG 0.387025 7_3:-82619954 Msa1130470:five_prime_UTR
CATCAATGTCAAAACATCTT+CGG 0.391195 7_3:-82619466 Msa1130470:CDS
ATAATAATATTTCTACAATT+AGG 0.397748 7_3:+82619981 None:intergenic
ATCAAGTTTCCAATTGCAAA+AGG 0.400969 7_3:+82617805 None:intergenic
GTTATTGAATTGAAATTTGT+AGG 0.401634 7_3:+82620258 None:intergenic
AATTAAATGCTTACACTTGT+GGG 0.404724 7_3:+82618421 None:intergenic
TAGTTGGTCAAGGAGCGTTC+AGG 0.416347 7_3:-82618798 Msa1130470:CDS
AAATGGAATGAAATAATCAT+TGG 0.416426 7_3:-82617430 Msa1130470:three_prime_UTR
GATGGTAAATGGAATGCATT+TGG 0.428711 7_3:+82619753 None:intergenic
TTTAACTAACAAACAGAAGT+TGG 0.431926 7_3:-82619595 Msa1130470:CDS
TGGTGTTCCTCCAACATTGA+TGG 0.433858 7_3:-82618701 Msa1130470:CDS
TCTTGGCACCGCTCTCTGAA+TGG 0.434707 7_3:+82619107 None:intergenic
TCAATATTTCTCTCGTTCTC+GGG 0.438311 7_3:-82619702 Msa1130470:CDS
TCGAAGTGATACTCTACTTA+AGG 0.438824 7_3:-82619550 Msa1130470:CDS
GATGGTCAAGTGCTTGCATA+AGG 0.443223 7_3:-82618683 Msa1130470:CDS
AGCTTCCACCTTTCGATCTA+CGG 0.445912 7_3:-82620203 Msa1130470:five_prime_UTR
CAATTGGAAACTTGATGTGC+AGG 0.450882 7_3:-82617798 Msa1130470:CDS
AGAGTTCGAGCACATTCAAT+TGG 0.454661 7_3:+82617877 None:intergenic
GAACGAGAGAAATATTGAAA+TGG 0.459276 7_3:+82619707 None:intergenic
GTTCTGGTTCCAATTGATCA+TGG 0.461509 7_3:-82618454 Msa1130470:CDS
ATCTTAGCCATCAAGTCTCC+TGG 0.464083 7_3:+82618649 None:intergenic
CTCCAAAAGAAAATCTCTAT+CGG 0.467054 7_3:+82619077 None:intergenic
GTTTGATGATCTTGAGGAGC+AGG 0.472677 7_3:-82619364 Msa1130470:CDS
GCTAGCGAATACTATCCAAT+AGG 0.473031 7_3:-82618979 Msa1130470:CDS
TAATGATAATGGAAGACCTC+GGG 0.474414 7_3:+82618849 None:intergenic
TTGAAGAAAGGGGTTGAGAG+AGG 0.478531 7_3:-82617835 Msa1130470:CDS
TTGGCACACAGATTAAGAAA+TGG 0.480404 7_3:-82617447 Msa1130470:three_prime_UTR
CCAATAGTTTCAGCAGAATA+CGG 0.480969 7_3:+82617964 None:intergenic
TTGAGCAATTAGTGCAAAAG+AGG 0.481203 7_3:+82620228 None:intergenic
TCCCATTCCATAACACGAAA+AGG 0.482974 7_3:+82619669 None:intergenic
AAATTAAATGCTTACACTTG+TGG 0.484991 7_3:+82618420 None:intergenic
CATAAGGGATTTAACCATCC+AGG 0.485124 7_3:-82618667 Msa1130470:CDS
AAGCAGTATCCATGATCAAT+TGG 0.485316 7_3:+82618445 None:intergenic
AGTTGGTCAAGGAGCGTTCA+GGG 0.486553 7_3:-82618797 Msa1130470:CDS
GAACAAGGAATCTGTGATAG+AGG 0.486875 7_3:-82617767 Msa1130470:CDS
TTAGTGCAAAAGAGGGTAAC+GGG 0.487025 7_3:+82620236 None:intergenic
TCAAGTTTCCAATTGCAAAA+GGG 0.487387 7_3:+82617806 None:intergenic
AACCCCTTTCTTCAAAAGCA+TGG 0.489309 7_3:+82617843 None:intergenic
AATGGCTCAGTGGGATCCAC+TGG 0.494737 7_3:+82619783 None:intergenic
GGAGACTTGATGGCTAAGAT+TGG 0.495959 7_3:-82618646 Msa1130470:CDS
ATAGGATCTGCAGAAGGTAC+CGG 0.497760 7_3:-82618961 Msa1130470:CDS
TGTAGAAATATTATTATGCA+TGG 0.497787 7_3:-82619975 Msa1130470:five_prime_UTR
TATCACTTCGAGCGAGTTCA+CGG 0.499648 7_3:+82619562 None:intergenic
AGATGCTGTTTCTCAAATCA+TGG 0.499783 7_3:-82617686 Msa1130470:CDS
TTCTTGTGGAAGAAAATTTG+AGG 0.501544 7_3:-82619154 Msa1130470:CDS
GCAAATGCAGATAGGCATGC+TGG 0.503643 7_3:-82618517 Msa1130470:CDS
AAACAGAAGTTGGTTTATGC+TGG 0.505699 7_3:-82619585 Msa1130470:CDS
AGTACACAAAATTAGTGTAC+TGG 0.506035 7_3:-82618551 Msa1130470:CDS
CAAGTTATTTGGTGATGTGA+AGG 0.508171 7_3:-82618731 Msa1130470:CDS
TCCAAAAGAAAATCTCTATC+GGG 0.509865 7_3:+82619078 None:intergenic
GCCATTGGCTCTTCGTCGAT+AGG 0.511038 7_3:+82618883 None:intergenic
TAGTGTACTGGACATAAGAT+TGG 0.513283 7_3:-82618539 Msa1130470:CDS
GAGTAAGTTATAACAAAGAA+TGG 0.513459 7_3:+82617502 None:intergenic
GAGAGTTGAAAATCTTATCA+AGG 0.515143 7_3:+82617656 None:intergenic
TAAGATTGGCAAATGCAGAT+AGG 0.515290 7_3:-82618525 Msa1130470:CDS
CAAGTTTCCAATTGCAAAAG+GGG 0.516578 7_3:+82617807 None:intergenic
CCATTATCATTAGACGGTGA+AGG 0.523513 7_3:-82618838 Msa1130470:CDS
TAGGATCTGCAGAAGGTACC+GGG 0.527750 7_3:-82618960 Msa1130470:CDS
TGTGGAAGAAAATTTGAGGT+TGG 0.531735 7_3:-82619150 Msa1130470:CDS
GTGTAATGGGGAACGGTTGG+AGG 0.532109 7_3:-82619334 Msa1130470:CDS
AAGTTATTTGGTGATGTGAA+GGG 0.535843 7_3:-82618730 Msa1130470:CDS
CACCGCTCTCTGAATGGCAT+CGG 0.538669 7_3:+82619113 None:intergenic
GCTGTGAAGATATCGGTCCT+GGG 0.539152 7_3:-82618591 Msa1130470:CDS
GAAACAGTTTGATGATCTTG+AGG 0.541679 7_3:-82619370 Msa1130470:CDS
TCATTTACCGGGAAAGCCCC+AGG 0.542503 7_3:+82618574 None:intergenic
GGAAGAAAATTTGAGGTTGG+TGG 0.542977 7_3:-82619147 Msa1130470:CDS
GAGCAGGAACTTGTGTGTAA+TGG 0.543660 7_3:-82619348 Msa1130470:CDS
AATGTAGCTTCACTTGTGCC+AGG 0.546538 7_3:+82617712 None:intergenic
TATTGGGTACATAAAGTCAC+TGG 0.549010 7_3:-82617947 Msa1130470:CDS
TAGTTTCAGCAGAATACGGC+TGG 0.549860 7_3:+82617968 None:intergenic
GGAGACAACAATGGCTCAGT+GGG 0.550782 7_3:+82619774 None:intergenic
TGAAAATCTTATCAAGGCGC+TGG 0.555048 7_3:+82617662 None:intergenic
TGTGAGAGAAAAGTTTGAGA+GGG 0.557080 7_3:-82617337 Msa1130470:three_prime_UTR
ATGGTCAAGTGCTTGCATAA+GGG 0.559797 7_3:-82618682 Msa1130470:CDS
AATGGGAGCTGTGAAGATAT+CGG 0.559895 7_3:-82618598 Msa1130470:CDS
GCCTATCGACGAAGAGCCAA+TGG 0.563365 7_3:-82618884 Msa1130470:CDS
GTTACAATGGACAACTCAAA+GGG 0.565579 7_3:+82619219 None:intergenic
AAGGATTATGGAGTAACTGA+TGG 0.571025 7_3:-82619531 Msa1130470:CDS
AGTTACAATGGACAACTCAA+AGG 0.571959 7_3:+82619218 None:intergenic
CAAATGCAGATAGGCATGCT+GGG 0.572744 7_3:-82618516 Msa1130470:CDS
GTGTGAGAGAAAAGTTTGAG+AGG 0.572922 7_3:-82617338 Msa1130470:three_prime_UTR
CACTTGACCATCAATGTTGG+AGG 0.573274 7_3:+82618694 None:intergenic
GAATACGGCTGGCGAGCTTG+GGG 0.573463 7_3:+82617979 None:intergenic
TGTGTGTAATGGGGAACGGT+TGG 0.578859 7_3:-82619337 Msa1130470:CDS
AAGCATAAAGTAAGCTCCCC+CGG 0.581274 7_3:+82618942 None:intergenic
ATTAGTGCAAAAGAGGGTAA+CGG 0.581518 7_3:+82620235 None:intergenic
GTCCATTGTAACTACAGACT+TGG 0.582693 7_3:-82619208 Msa1130470:CDS
TGTTAGTACTCTTAGTCCAG+TGG 0.584156 7_3:-82619799 Msa1130470:CDS
TGAGCAATTAGTGCAAAAGA+GGG 0.585294 7_3:+82620229 None:intergenic
TTGATTCTCAGTGTAAACAA+AGG 0.588245 7_3:-82619883 Msa1130470:five_prime_UTR
GGTCTTCCATTATCATTAGA+CGG 0.588994 7_3:-82618844 Msa1130470:CDS
TCCTCAAAAGACAAGTGAGA+TGG 0.590743 7_3:+82619735 None:intergenic
ATATGTATAGCTCAAAACAT+TGG 0.592974 7_3:-82617576 Msa1130470:three_prime_UTR
AGCCAAGTCTGTAGTTACAA+TGG 0.593929 7_3:+82619206 None:intergenic
AAGGGTACAATAGTTGGTCA+AGG 0.598430 7_3:-82618808 Msa1130470:CDS
TTAGTGAAAATGTCATCTGC+TGG 0.606185 7_3:-82619822 Msa1130470:exon
ATGTAAAATACATCAAGCGA+AGG 0.618575 7_3:-82619407 Msa1130470:CDS
AAACGACACCGTAGATCGAA+AGG 0.619213 7_3:+82620195 None:intergenic
ATGGTAAACTCTGCATACGA+TGG 0.619677 7_3:-82619006 Msa1130470:CDS
AAGCACTTGACCATCAATGT+TGG 0.627426 7_3:+82618691 None:intergenic
TACCGATGCCATTCAGAGAG+CGG 0.639607 7_3:-82619115 Msa1130470:CDS
CTGTGAAGATATCGGTCCTG+GGG 0.640174 7_3:-82618590 Msa1130470:CDS
TAGCCATCAAGTCTCCTGGA+TGG 0.640520 7_3:+82618653 None:intergenic
CTGCAAGCATAATGATGCAG+TGG 0.641116 7_3:-82619286 Msa1130470:CDS
CTAATGATAATGGAAGACCT+CGG 0.646268 7_3:+82618848 None:intergenic
AACTTGTGTGTAATGGGGAA+CGG 0.646813 7_3:-82619341 Msa1130470:CDS
TGGAGACAACAATGGCTCAG+TGG 0.649706 7_3:+82619773 None:intergenic
AATTGGAAACTTGATGTGCA+GGG 0.653610 7_3:-82617797 Msa1130470:CDS
GTGCAGGGAATCATTGAACA+AGG 0.654835 7_3:-82617782 Msa1130470:CDS
CTGTTAAGTTCAAAATCCAA+AGG 0.656079 7_3:-82619635 Msa1130470:CDS
AATGCATTTGGAGACAACAA+TGG 0.660019 7_3:+82619765 None:intergenic
AATGATAATGGAAGACCTCG+GGG 0.661241 7_3:+82618850 None:intergenic
CAATTGGAACCAGAACAGAC+TGG 0.671066 7_3:+82618461 None:intergenic
AAACTCAATGATGATGACGA+TGG 0.676648 7_3:+82620286 None:intergenic
AGGATCTGCAGAAGGTACCG+GGG 0.678821 7_3:-82618959 Msa1130470:CDS
GCAGGAACTTGTGTGTAATG+GGG 0.680555 7_3:-82619346 Msa1130470:CDS
TATCCAATAGGATCTGCAGA+AGG 0.683129 7_3:-82618967 Msa1130470:CDS
CGACACCGTAGATCGAAAGG+TGG 0.695095 7_3:+82620198 None:intergenic
TCAATGTCAAAACATCTTCG+GGG 0.701785 7_3:-82619464 Msa1130470:CDS
GGATCTGCAGAAGGTACCGG+GGG 0.709644 7_3:-82618958 Msa1130470:CDS
ATGATAATGGAAGACCTCGG+GGG 0.745031 7_3:+82618851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAATATTTCTACAATT+AGG + chr7_3:82617559-82617578 None:intergenic 10.0%
!! TTATGACTTAAAAAATGAAT+TGG - chr7_3:82619373-82619392 Msa1130470:CDS 15.0%
!! GTTATTGAATTGAAATTTGT+AGG + chr7_3:82617282-82617301 None:intergenic 20.0%
!! AAAAACTAATACGAACAAAA+AGG + chr7_3:82617473-82617492 None:intergenic 20.0%
!! TGTAGAAATATTATTATGCA+TGG - chr7_3:82617562-82617581 Msa1130470:three_prime_UTR 20.0%
!!! TTCTGTTTGTTAGTTAAAAA+TGG + chr7_3:82617940-82617959 None:intergenic 20.0%
!!! ATTTTAGGGTTAACTATAAT+TGG + chr7_3:82618486-82618505 None:intergenic 20.0%
!!! AACATAATGTTTTCAAATAG+TGG - chr7_3:82619199-82619218 Msa1130470:CDS 20.0%
!! AAATGGAATGAAATAATCAT+TGG - chr7_3:82620107-82620126 Msa1130470:five_prime_UTR 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG + chr7_3:82620156-82620175 None:intergenic 20.0%
!! GAAAAAAATTAAAGTTGCAT+TGG - chr7_3:82620234-82620253 Msa1130470:five_prime_UTR 20.0%
!!! TTTATCAGCTTGTTGAATTT+AGG - chr7_3:82617363-82617382 Msa1130470:three_prime_UTR 25.0%
!!! TTATCAGCTTGTTGAATTTA+GGG - chr7_3:82617364-82617383 Msa1130470:three_prime_UTR 25.0%
! ATCTTCTAATTTGATCTTTG+AGG - chr7_3:82617391-82617410 Msa1130470:three_prime_UTR 25.0%
!!! TTTGATCTTTGAGGTAAAAT+TGG - chr7_3:82617400-82617419 Msa1130470:three_prime_UTR 25.0%
!! AAAAAGGAAAGATCTTTTGA+AGG + chr7_3:82617457-82617476 None:intergenic 25.0%
! TTTGAAAAAACCTTTAAGCT+AGG - chr7_3:82617490-82617509 Msa1130470:three_prime_UTR 25.0%
!!! ATTTGTAGACTTTAGTTTTG+AGG - chr7_3:82617618-82617637 Msa1130470:three_prime_UTR 25.0%
!!! TTTGTAGACTTTAGTTTTGA+GGG - chr7_3:82617619-82617638 Msa1130470:three_prime_UTR 25.0%
!! AGTGTAAACAAAGGTTATTT+TGG - chr7_3:82617663-82617682 Msa1130470:CDS 25.0%
! TTTAACTAACAAACAGAAGT+TGG - chr7_3:82617942-82617961 Msa1130470:CDS 25.0%
!!! GATGTTTTTGAAAATTCTTG+TGG - chr7_3:82618369-82618388 Msa1130470:intron 25.0%
!! TTAAAAAAGGGTACAATAGT+TGG - chr7_3:82618723-82618742 Msa1130470:CDS 25.0%
! AGATGTTTGTGAAAAACAAT+GGG - chr7_3:82618922-82618941 Msa1130470:CDS 25.0%
!! ATTTTGTGTACTTCATTTAC+CGG + chr7_3:82618978-82618997 None:intergenic 25.0%
! AATTAAATGCTTACACTTGT+GGG + chr7_3:82619119-82619138 None:intergenic 25.0%
! AAATTAAATGCTTACACTTG+TGG + chr7_3:82619120-82619139 None:intergenic 25.0%
!! TTTTCAAATAGTGGTTATAG+CGG - chr7_3:82619208-82619227 Msa1130470:CDS 25.0%
! TTTGTGCAATCTACAATATA+TGG - chr7_3:82619337-82619356 Msa1130470:CDS 25.0%
! ACTTAAAAAATGAATTGGCT+AGG - chr7_3:82619378-82619397 Msa1130470:CDS 25.0%
! TGTATTGAAATAATGAAGTC+TGG - chr7_3:82619419-82619438 Msa1130470:CDS 25.0%
!! TTGAAGATTGTACTTTTGAA+TGG - chr7_3:82619526-82619545 Msa1130470:CDS 25.0%
! ATATGTATAGCTCAAAACAT+TGG - chr7_3:82619961-82619980 Msa1130470:five_prime_UTR 25.0%
!!! GGATTTTTAGTTCATAACAA+CGG - chr7_3:82619982-82620001 Msa1130470:five_prime_UTR 25.0%
! GAGTAAGTTATAACAAAGAA+TGG + chr7_3:82620038-82620057 None:intergenic 25.0%
!! AGGTAAAATTGGTCTCTTTT+GGG - chr7_3:82617411-82617430 Msa1130470:three_prime_UTR 30.0%
AAAAAACCTTTAAGCTAGGT+AGG - chr7_3:82617494-82617513 Msa1130470:three_prime_UTR 30.0%
!!! TTGTAGACTTTAGTTTTGAG+GGG - chr7_3:82617620-82617639 Msa1130470:three_prime_UTR 30.0%
TTGATTCTCAGTGTAAACAA+AGG - chr7_3:82617654-82617673 Msa1130470:CDS 30.0%
GAACGAGAGAAATATTGAAA+TGG + chr7_3:82617833-82617852 None:intergenic 30.0%
TTCAATATTTCTCTCGTTCT+CGG - chr7_3:82617834-82617853 Msa1130470:CDS 30.0%
CTGTTAAGTTCAAAATCCAA+AGG - chr7_3:82617902-82617921 Msa1130470:CDS 30.0%
GATACTCTACTTAAGGATTA+TGG - chr7_3:82617994-82618013 Msa1130470:CDS 30.0%
CATCAATGTCAAAACATCTT+CGG - chr7_3:82618071-82618090 Msa1130470:intron 30.0%
ATCAATGTCAAAACATCTTC+GGG - chr7_3:82618072-82618091 Msa1130470:intron 30.0%
ATGTAAAATACATCAAGCGA+AGG - chr7_3:82618130-82618149 Msa1130470:intron 30.0%
TTCTTGTGGAAGAAAATTTG+AGG - chr7_3:82618383-82618402 Msa1130470:intron 30.0%
TCCAAAAGAAAATCTCTATC+GGG + chr7_3:82618462-82618481 None:intergenic 30.0%
CTCCAAAAGAAAATCTCTAT+CGG + chr7_3:82618463-82618482 None:intergenic 30.0%
! CTGAAGCTAACTCAATTTTA+GGG + chr7_3:82618500-82618519 None:intergenic 30.0%
! ACTGAAGCTAACTCAATTTT+AGG + chr7_3:82618501-82618520 None:intergenic 30.0%
TACTTTATGCTTGATTCAAC+TGG - chr7_3:82618606-82618625 Msa1130470:CDS 30.0%
!! AAGTTATTTGGTGATGTGAA+GGG - chr7_3:82618807-82618826 Msa1130470:CDS 30.0%
CAGATGTTTGTGAAAAACAA+TGG - chr7_3:82618921-82618940 Msa1130470:CDS 30.0%
! TTTTGTGTACTTCATTTACC+GGG + chr7_3:82618977-82618996 None:intergenic 30.0%
AGTACACAAAATTAGTGTAC+TGG - chr7_3:82618986-82619005 Msa1130470:CDS 30.0%
TTGAAATAATGAAGTCTGGT+TGG - chr7_3:82619423-82619442 Msa1130470:CDS 30.0%
!!! ATTGCACTTTTGAAGTTTCA+TGG - chr7_3:82619627-82619646 Msa1130470:CDS 30.0%
!!! ACTTTTGAAGTTTCATGGAT+GGG - chr7_3:82619632-82619651 Msa1130470:CDS 30.0%
TCAAGTTTCCAATTGCAAAA+GGG + chr7_3:82619734-82619753 None:intergenic 30.0%
ATCAAGTTTCCAATTGCAAA+AGG + chr7_3:82619735-82619754 None:intergenic 30.0%
GAGAGTTGAAAATCTTATCA+AGG + chr7_3:82619884-82619903 None:intergenic 30.0%
TTGATATCTGCAATAGTAAC+AGG - chr7_3:82619918-82619937 Msa1130470:five_prime_UTR 30.0%
!!! TTTTTAGTTCATAACAACGG+AGG - chr7_3:82619985-82620004 Msa1130470:five_prime_UTR 30.0%
! AAACTCAATGATGATGACGA+TGG + chr7_3:82617254-82617273 None:intergenic 35.0%
ATTAGTGCAAAAGAGGGTAA+CGG + chr7_3:82617305-82617324 None:intergenic 35.0%
TGAGCAATTAGTGCAAAAGA+GGG + chr7_3:82617311-82617330 None:intergenic 35.0%
TTGAGCAATTAGTGCAAAAG+AGG + chr7_3:82617312-82617331 None:intergenic 35.0%
!! GAGGTAAAATTGGTCTCTTT+TGG - chr7_3:82617410-82617429 Msa1130470:three_prime_UTR 35.0%
!! GGTAAAATTGGTCTCTTTTG+GGG - chr7_3:82617412-82617431 Msa1130470:three_prime_UTR 35.0%
TTAGTGAAAATGTCATCTGC+TGG - chr7_3:82617715-82617734 Msa1130470:CDS 35.0%
AATGCATTTGGAGACAACAA+TGG + chr7_3:82617775-82617794 None:intergenic 35.0%
GATGGTAAATGGAATGCATT+TGG + chr7_3:82617787-82617806 None:intergenic 35.0%
AAGACAAGTGAGATGGTAAA+TGG + chr7_3:82617798-82617817 None:intergenic 35.0%
TCAATATTTCTCTCGTTCTC+GGG - chr7_3:82617835-82617854 Msa1130470:CDS 35.0%
! TCCTTTTCGTGTTATGGAAT+GGG - chr7_3:82617867-82617886 Msa1130470:CDS 35.0%
! AAACAGAAGTTGGTTTATGC+TGG - chr7_3:82617952-82617971 Msa1130470:CDS 35.0%
TCGAAGTGATACTCTACTTA+AGG - chr7_3:82617987-82618006 Msa1130470:CDS 35.0%
AAGGATTATGGAGTAACTGA+TGG - chr7_3:82618006-82618025 Msa1130470:CDS 35.0%
TCAATGTCAAAACATCTTCG+GGG - chr7_3:82618073-82618092 Msa1130470:intron 35.0%
! GGGGAATGAATTTTCTTTTC+AGG - chr7_3:82618092-82618111 Msa1130470:intron 35.0%
! GAAACAGTTTGATGATCTTG+AGG - chr7_3:82618167-82618186 Msa1130470:intron 35.0%
TGCATCTGTTTGTTCGAAAA+AGG - chr7_3:82618274-82618293 Msa1130470:intron 35.0%
GTTACAATGGACAACTCAAA+GGG + chr7_3:82618321-82618340 None:intergenic 35.0%
AGTTACAATGGACAACTCAA+AGG + chr7_3:82618322-82618341 None:intergenic 35.0%
! TGTGGAAGAAAATTTGAGGT+TGG - chr7_3:82618387-82618406 Msa1130470:intron 35.0%
! TCCCGATAGAGATTTTCTTT+TGG - chr7_3:82618458-82618477 Msa1130470:CDS 35.0%
AGCTTCAGTGATTCGAAATA+TGG - chr7_3:82618512-82618531 Msa1130470:CDS 35.0%
!! TAATGATAATGGAAGACCTC+GGG + chr7_3:82618691-82618710 None:intergenic 35.0%
!! CTAATGATAATGGAAGACCT+CGG + chr7_3:82618692-82618711 None:intergenic 35.0%
GGTCTTCCATTATCATTAGA+CGG - chr7_3:82618693-82618712 Msa1130470:CDS 35.0%
!! GTTTTGGATCATCCAATAAG+TGG - chr7_3:82618777-82618796 Msa1130470:CDS 35.0%
!! CAAGTTATTTGGTGATGTGA+AGG - chr7_3:82618806-82618825 Msa1130470:CDS 35.0%
! GTTTTTCACAAACATCTGCA+TGG + chr7_3:82618919-82618938 None:intergenic 35.0%
TAGTGTACTGGACATAAGAT+TGG - chr7_3:82618998-82619017 Msa1130470:CDS 35.0%
TAAGATTGGCAAATGCAGAT+AGG - chr7_3:82619012-82619031 Msa1130470:CDS 35.0%
!!! GAATATTTTGATCAGCACAG+TGG - chr7_3:82619043-82619062 Msa1130470:CDS 35.0%
AAGCAGTATCCATGATCAAT+TGG + chr7_3:82619095-82619114 None:intergenic 35.0%
GTGTTGTCAATTGCAAATGA+TGG + chr7_3:82619279-82619298 None:intergenic 35.0%
ACATAGAAGAATTGCCACAT+CGG + chr7_3:82619301-82619320 None:intergenic 35.0%
AGCAACAACTGTTAAACGAT+TGG + chr7_3:82619495-82619514 None:intergenic 35.0%
!! GTACTTTTGAATGGCTTTAC+TGG - chr7_3:82619535-82619554 Msa1130470:CDS 35.0%
CCAATAGTTTCAGCAGAATA+CGG + chr7_3:82619576-82619595 None:intergenic 35.0%
CGTATTCTGCTGAAACTATT+GGG - chr7_3:82619574-82619593 Msa1130470:CDS 35.0%
TATTGGGTACATAAAGTCAC+TGG - chr7_3:82619590-82619609 Msa1130470:CDS 35.0%
!!! CACTTTTGAAGTTTCATGGA+TGG - chr7_3:82619631-82619650 Msa1130470:CDS 35.0%
!! TCAACCATGCTTTTGAAGAA+AGG - chr7_3:82619690-82619709 Msa1130470:CDS 35.0%
!! CAACCATGCTTTTGAAGAAA+GGG - chr7_3:82619691-82619710 Msa1130470:CDS 35.0%
!! AACCATGCTTTTGAAGAAAG+GGG - chr7_3:82619692-82619711 Msa1130470:CDS 35.0%
CAAGTTTCCAATTGCAAAAG+GGG + chr7_3:82619733-82619752 None:intergenic 35.0%
AATTGGAAACTTGATGTGCA+GGG - chr7_3:82619740-82619759 Msa1130470:CDS 35.0%
!! AGATGCTGTTTCTCAAATCA+TGG - chr7_3:82619851-82619870 Msa1130470:five_prime_UTR 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_3:82620300-82620319 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - chr7_3:82620065-82620084 Msa1130470:five_prime_UTR 35.0%
TTGGCACACAGATTAAGAAA+TGG - chr7_3:82620090-82620109 Msa1130470:five_prime_UTR 35.0%
TGTGAGAGAAAAGTTTGAGA+GGG - chr7_3:82620200-82620219 Msa1130470:five_prime_UTR 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG - chr7_3:82620209-82620228 Msa1130470:five_prime_UTR 35.0%
TTAGTGCAAAAGAGGGTAAC+GGG + chr7_3:82617304-82617323 None:intergenic 40.0%
CATACTCCTACCTAGCTTAA+AGG + chr7_3:82617503-82617522 None:intergenic 40.0%
!! GGTTGAGCTGTTTGTTATGA+TGG - chr7_3:82617583-82617602 Msa1130470:three_prime_UTR 40.0%
TGTTAGTACTCTTAGTCCAG+TGG - chr7_3:82617738-82617757 Msa1130470:CDS 40.0%
! ACCATCTCACTTGTCTTTTG+AGG - chr7_3:82617801-82617820 Msa1130470:CDS 40.0%
TCCTCAAAAGACAAGTGAGA+TGG + chr7_3:82617805-82617824 None:intergenic 40.0%
!! GTTGACTCCTTTTCGTGTTA+TGG - chr7_3:82617861-82617880 Msa1130470:CDS 40.0%
! CTCCTTTTCGTGTTATGGAA+TGG - chr7_3:82617866-82617885 Msa1130470:CDS 40.0%
TCCCATTCCATAACACGAAA+AGG + chr7_3:82617871-82617890 None:intergenic 40.0%
!!! TTTTCTTTTCAGGTCGAACG+AGG - chr7_3:82618102-82618121 Msa1130470:intron 40.0%
CAAGCGAAGGATTGCTAAAA+AGG - chr7_3:82618143-82618162 Msa1130470:intron 40.0%
AGCAGGAACTTGTGTGTAAT+GGG - chr7_3:82618190-82618209 Msa1130470:intron 40.0%
! AACTTGTGTGTAATGGGGAA+CGG - chr7_3:82618196-82618215 Msa1130470:intron 40.0%
GTCCATTGTAACTACAGACT+TGG - chr7_3:82618329-82618348 Msa1130470:intron 40.0%
AGCCAAGTCTGTAGTTACAA+TGG + chr7_3:82618334-82618353 None:intergenic 40.0%
! GGAAGAAAATTTGAGGTTGG+TGG - chr7_3:82618390-82618409 Msa1130470:intron 40.0%
ATGGTAAACTCTGCATACGA+TGG - chr7_3:82618531-82618550 Msa1130470:CDS 40.0%
GCTAGCGAATACTATCCAAT+AGG - chr7_3:82618558-82618577 Msa1130470:CDS 40.0%
TATCCAATAGGATCTGCAGA+AGG - chr7_3:82618570-82618589 Msa1130470:CDS 40.0%
!! AATGATAATGGAAGACCTCG+GGG + chr7_3:82618690-82618709 None:intergenic 40.0%
CCTTCACCGTCTAATGATAA+TGG + chr7_3:82618702-82618721 None:intergenic 40.0%
CCATTATCATTAGACGGTGA+AGG - chr7_3:82618699-82618718 Msa1130470:CDS 40.0%
AGACGGTGAAGGCTTAAAAA+AGG - chr7_3:82618710-82618729 Msa1130470:CDS 40.0%
GACGGTGAAGGCTTAAAAAA+GGG - chr7_3:82618711-82618730 Msa1130470:CDS 40.0%
! AAGGGTACAATAGTTGGTCA+AGG - chr7_3:82618729-82618748 Msa1130470:CDS 40.0%
!! GGAAGTTGCTGCTTATGTTT+TGG - chr7_3:82618761-82618780 Msa1130470:CDS 40.0%
AAGCACTTGACCATCAATGT+TGG + chr7_3:82618849-82618868 None:intergenic 40.0%
ATGGTCAAGTGCTTGCATAA+GGG - chr7_3:82618855-82618874 Msa1130470:CDS 40.0%
CATAAGGGATTTAACCATCC+AGG - chr7_3:82618870-82618889 Msa1130470:CDS 40.0%
AATGGGAGCTGTGAAGATAT+CGG - chr7_3:82618939-82618958 Msa1130470:CDS 40.0%
!!! TATTTTGATCAGCACAGTGG+AGG - chr7_3:82619046-82619065 Msa1130470:CDS 40.0%
!! GTTCTGGTTCCAATTGATCA+TGG - chr7_3:82619083-82619102 Msa1130470:CDS 40.0%
CCGTATTCTGCTGAAACTAT+TGG - chr7_3:82619573-82619592 Msa1130470:CDS 40.0%
AGAGTTCGAGCACATTCAAT+TGG + chr7_3:82619663-82619682 None:intergenic 40.0%
AACCCCTTTCTTCAAAAGCA+TGG + chr7_3:82619697-82619716 None:intergenic 40.0%
CAATTGGAAACTTGATGTGC+AGG - chr7_3:82619739-82619758 Msa1130470:CDS 40.0%
GAACAAGGAATCTGTGATAG+AGG - chr7_3:82619770-82619789 Msa1130470:CDS 40.0%
TGAAAATCTTATCAAGGCGC+TGG + chr7_3:82619878-82619897 None:intergenic 40.0%
!! CAACGGAGGTTTGTTTTCTT+TGG - chr7_3:82619999-82620018 Msa1130470:five_prime_UTR 40.0%
!! GGAGGTTTGTTTTCTTTGGT+TGG - chr7_3:82620003-82620022 Msa1130470:five_prime_UTR 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_3:82620060-82620079 None:intergenic 40.0%
GTGTGAGAGAAAAGTTTGAG+AGG - chr7_3:82620199-82620218 Msa1130470:five_prime_UTR 40.0%
AGCTTCCACCTTTCGATCTA+CGG - chr7_3:82617334-82617353 Msa1130470:three_prime_UTR 45.0%
AAACGACACCGTAGATCGAA+AGG + chr7_3:82617345-82617364 None:intergenic 45.0%
ATGGAAGACTCTCACACCTT+TGG + chr7_3:82617921-82617940 None:intergenic 45.0%
TATCACTTCGAGCGAGTTCA+CGG + chr7_3:82617978-82617997 None:intergenic 45.0%
!!! TTTTCAGGTCGAACGAGGTA+GGG - chr7_3:82618107-82618126 Msa1130470:intron 45.0%
! GTTTGATGATCTTGAGGAGC+AGG - chr7_3:82618173-82618192 Msa1130470:intron 45.0%
GAGCAGGAACTTGTGTGTAA+TGG - chr7_3:82618189-82618208 Msa1130470:intron 45.0%
GCAGGAACTTGTGTGTAATG+GGG - chr7_3:82618191-82618210 Msa1130470:intron 45.0%
CTGCAAGCATAATGATGCAG+TGG - chr7_3:82618251-82618270 Msa1130470:intron 45.0%
TCTCTATCGGGAAGCTTTCT+TGG + chr7_3:82618450-82618469 None:intergenic 45.0%
GTACCTTCTGCAGATCCTAT+TGG + chr7_3:82618576-82618595 None:intergenic 45.0%
! ATAGGATCTGCAGAAGGTAC+CGG - chr7_3:82618576-82618595 Msa1130470:CDS 45.0%
AAGCATAAAGTAAGCTCCCC+CGG + chr7_3:82618598-82618617 None:intergenic 45.0%
!! ATGATAATGGAAGACCTCGG+GGG + chr7_3:82618689-82618708 None:intergenic 45.0%
AACTTGCGACGTCCACTTAT+TGG + chr7_3:82618792-82618811 None:intergenic 45.0%
AGTGGACGTCGCAAGTTATT+TGG - chr7_3:82618795-82618814 Msa1130470:CDS 45.0%
TGGTGTTCCTCCAACATTGA+TGG - chr7_3:82618836-82618855 Msa1130470:CDS 45.0%
CACTTGACCATCAATGTTGG+AGG + chr7_3:82618846-82618865 None:intergenic 45.0%
GATGGTCAAGTGCTTGCATA+AGG - chr7_3:82618854-82618873 Msa1130470:CDS 45.0%
TAACCATCCAGGAGACTTGA+TGG - chr7_3:82618881-82618900 Msa1130470:CDS 45.0%
ATCTTAGCCATCAAGTCTCC+TGG + chr7_3:82618891-82618910 None:intergenic 45.0%
! GGAGACTTGATGGCTAAGAT+TGG - chr7_3:82618891-82618910 Msa1130470:CDS 45.0%
CAAATGCAGATAGGCATGCT+GGG - chr7_3:82619021-82619040 Msa1130470:CDS 45.0%
CAATTGGAACCAGAACAGAC+TGG + chr7_3:82619079-82619098 None:intergenic 45.0%
TGCAATTGACAACACCGATG+TGG - chr7_3:82619284-82619303 Msa1130470:CDS 45.0%
TAGTTTCAGCAGAATACGGC+TGG + chr7_3:82619572-82619591 None:intergenic 45.0%
TTGAAGAAAGGGGTTGAGAG+AGG - chr7_3:82619702-82619721 Msa1130470:CDS 45.0%
! GGATTGACCCCTTTTGCAAT+TGG - chr7_3:82619723-82619742 Msa1130470:CDS 45.0%
GTGCAGGGAATCATTGAACA+AGG - chr7_3:82619755-82619774 Msa1130470:CDS 45.0%
GCATTTGAGTCTGTTCTTCC+TGG - chr7_3:82619807-82619826 Msa1130470:CDS 45.0%
AATGTAGCTTCACTTGTGCC+AGG + chr7_3:82619828-82619847 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_3:82620061-82620080 None:intergenic 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - chr7_3:82620071-82620090 Msa1130470:five_prime_UTR 45.0%
GGAGACAACAATGGCTCAGT+GGG + chr7_3:82617766-82617785 None:intergenic 50.0%
TGGAGACAACAATGGCTCAG+TGG + chr7_3:82617767-82617786 None:intergenic 50.0%
!!! CTTTTCAGGTCGAACGAGGT+AGG - chr7_3:82618106-82618125 Msa1130470:intron 50.0%
! TGTGTGTAATGGGGAACGGT+TGG - chr7_3:82618200-82618219 Msa1130470:intron 50.0%
TACCGATGCCATTCAGAGAG+CGG - chr7_3:82618422-82618441 Msa1130470:intron 50.0%
!! TAGGATCTGCAGAAGGTACC+GGG - chr7_3:82618577-82618596 Msa1130470:CDS 50.0%
!! TAGTTGGTCAAGGAGCGTTC+AGG - chr7_3:82618739-82618758 Msa1130470:CDS 50.0%
!! AGTTGGTCAAGGAGCGTTCA+GGG - chr7_3:82618740-82618759 Msa1130470:CDS 50.0%
! GGTGATGTGAAGGGTTTTGC+TGG - chr7_3:82618816-82618835 Msa1130470:CDS 50.0%
TAGCCATCAAGTCTCCTGGA+TGG + chr7_3:82618887-82618906 None:intergenic 50.0%
AGCTGTGAAGATATCGGTCC+TGG - chr7_3:82618945-82618964 Msa1130470:CDS 50.0%
GCTGTGAAGATATCGGTCCT+GGG - chr7_3:82618946-82618965 Msa1130470:CDS 50.0%
CTGTGAAGATATCGGTCCTG+GGG - chr7_3:82618947-82618966 Msa1130470:CDS 50.0%
GCAAATGCAGATAGGCATGC+TGG - chr7_3:82619020-82619039 Msa1130470:CDS 50.0%
GGACAATGACCAGTCTGTTC+TGG - chr7_3:82619067-82619086 Msa1130470:CDS 50.0%
CGACACCGTAGATCGAAAGG+TGG + chr7_3:82617342-82617361 None:intergenic 55.0%
AATGGCTCAGTGGGATCCAC+TGG + chr7_3:82617757-82617776 None:intergenic 55.0%
! GTGTAATGGGGAACGGTTGG+AGG - chr7_3:82618203-82618222 Msa1130470:intron 55.0%
CACCGCTCTCTGAATGGCAT+CGG + chr7_3:82618427-82618446 None:intergenic 55.0%
TCTTGGCACCGCTCTCTGAA+TGG + chr7_3:82618433-82618452 None:intergenic 55.0%
!! AGGATCTGCAGAAGGTACCG+GGG - chr7_3:82618578-82618597 Msa1130470:CDS 55.0%
GCCTATCGACGAAGAGCCAA+TGG - chr7_3:82618653-82618672 Msa1130470:CDS 55.0%
!! GCCATTGGCTCTTCGTCGAT+AGG + chr7_3:82618657-82618676 None:intergenic 55.0%
CGGGGGTTATTCACAGCCAT+TGG + chr7_3:82618672-82618691 None:intergenic 55.0%
ATGGCTGTGAATAACCCCCG+AGG - chr7_3:82618672-82618691 Msa1130470:CDS 55.0%
TCATTTACCGGGAAAGCCCC+AGG + chr7_3:82618966-82618985 None:intergenic 55.0%
AGAATACGGCTGGCGAGCTT+GGG + chr7_3:82619562-82619581 None:intergenic 55.0%
!! GGATCTGCAGAAGGTACCGG+GGG - chr7_3:82618579-82618598 Msa1130470:CDS 60.0%
TATCGGTCCTGGGGCTTTCC+CGG - chr7_3:82618956-82618975 Msa1130470:CDS 60.0%
GAATACGGCTGGCGAGCTTG+GGG + chr7_3:82619561-82619580 None:intergenic 60.0%
CAGAATACGGCTGGCGAGCT+TGG + chr7_3:82619563-82619582 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82617240 82620319 82617240 ID=Msa1130470;Name=Msa1130470
chr7_3 mRNA 82617240 82620319 82617240 ID=Msa1130470-mRNA-1;Parent=Msa1130470;Name=Msa1130470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=484|1|1|1|1|1|2|408|595
chr7_3 exon 82617240 82618034 82617240 ID=Msa1130470-mRNA-1:exon:24413;Parent=Msa1130470-mRNA-1
chr7_3 exon 82618435 82620319 82618435 ID=Msa1130470-mRNA-1:exon:24412;Parent=Msa1130470-mRNA-1
chr7_3 five_prime_UTR 82619836 82620319 82619836 ID=Msa1130470-mRNA-1:five_prime_utr;Parent=Msa1130470-mRNA-1
chr7_3 CDS 82618435 82619835 82618435 ID=Msa1130470-mRNA-1:cds;Parent=Msa1130470-mRNA-1
chr7_3 CDS 82617648 82618034 82617648 ID=Msa1130470-mRNA-1:cds;Parent=Msa1130470-mRNA-1
chr7_3 three_prime_UTR 82617240 82617647 82617240 ID=Msa1130470-mRNA-1:three_prime_utr;Parent=Msa1130470-mRNA-1
Gene Sequence

>Msa1130470

ATGTCATCTGCTGGTGTTAGTACTCTTAGTCCAGTGGATCCCACTGAGCCATTGTTGTCTCCAAATGCATTCCATTTACCATCTCACTTGTCTTTTGAGGACAAATCCATTTCAATATTTCTCTCGTTCTCGGGTTCGTTGACTCCTTTTCGTGTTATGGAATGGGATACTATTGAGTCTGTTAAGTTCAAAATCCAAAGGTGTGAGAGTCTTCCATTTTTAACTAACAAACAGAAGTTGGTTTATGCTGGCCGTGAACTCGCTCGAAGTGATACTCTACTTAAGGATTATGGAGTAACTGATGGAAATGTTTTGCATTTGATAATCAAATTATCAGATCTTCAACTCATCAATGTCAAAACATCTTCGGGGAATGAATTTTCTTTTCAGGTCGAACGAGGTAGGGATGTAAAATACATCAAGCGAAGGATTGCTAAAAAGGAGAAACAGTTTGATGATCTTGAGGAGCAGGAACTTGTGTGTAATGGGGAACGGTTGGAGGATCAGAAGCTTATTGATGACATCTGCTGCAAGCATAATGATGCAGTGGTGCATCTGTTTGTTCGAAAAAGGAATGCAAAAGTTCATAGAAGACCCTTTGAGTTGTCCATTGTAACTACAGACTTGGCTGATACGAAAACTGACGATGTTTTTGAAAATTCTTGTGGAAGAAAATTTGAGGTTGGTGGTGTAGAAGATACCGATGCCATTCAGAGAGCGGTGCCAAGAAAGCTTCCCGATAGAGATTTTCTTTTGGAGCCAATTATAGTTAACCCTAAAATTGAGTTAGCTTCAGTGATTCGAAATATGGTAAACTCTGCATACGATGGACTAGCTAGCGAATACTATCCAATAGGATCTGCAGAAGGTACCGGGGGAGCTTACTTTATGCTTGATTCAACTGGTCAGAAGTATGTGTCTGTTTTTAAGCCTATCGACGAAGAGCCAATGGCTGTGAATAACCCCCGAGGTCTTCCATTATCATTAGACGGTGAAGGCTTAAAAAAGGGTACAATAGTTGGTCAAGGAGCGTTCAGGGAAGTTGCTGCTTATGTTTTGGATCATCCAATAAGTGGACGTCGCAAGTTATTTGGTGATGTGAAGGGTTTTGCTGGTGTTCCTCCAACATTGATGGTCAAGTGCTTGCATAAGGGATTTAACCATCCAGGAGACTTGATGGCTAAGATTGGATCCATGCAGATGTTTGTGAAAAACAATGGGAGCTGTGAAGATATCGGTCCTGGGGCTTTCCCGGTAAATGAAGTACACAAAATTAGTGTACTGGACATAAGATTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCACAGTGGAGGACAATGACCAGTCTGTTCTGGTTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACTTTTGAATGGCTTTACTGGCCCCAAGCTCGCCAGCCGTATTCTGCTGAAACTATTGGGTACATAAAGTCACTGGATGCTGAAGAAGATATTGCACTTTTGAAGTTTCATGGATGGGATCTGCCAATTGAATGTGCTCGAACTCTTAGAATCTCAACCATGCTTTTGAAGAAAGGGGTTGAGAGAGGATTGACCCCTTTTGCAATTGGAAACTTGATGTGCAGGGAATCATTGAACAAGGAATCTGTGATAGAGGAAATAGTTGAAGAAGCATTTGAGTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTAGATGCTGTTTCTCAAATCATGGACCAGCGCCTTGATAAGATTTTCAACTCTCTTTTTTAA
Protein sequence

>Msa1130470

MSSAGVSTLSPVDPTEPLLSPNAFHLPSHLSFEDKSISIFLSFSGSLTPFRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTLLKDYGVTDGNVLHLIIKLSDLQLINVKTSSGNEFSFQVERGRDVKYIKRRIAKKEKQFDDLEEQELVCNGERLEDQKLIDDICCKHNDAVVHLFVRKRNAKVHRRPFELSIVTTDLADTKTDDVFENSCGRKFEVGGVEDTDAIQRAVPRKLPDRDFLLEPIIVNPKIELASVIRNMVNSAYDGLASEYYPIGSAEGTGGAYFMLDSTGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTIVGQGAFREVAAYVLDHPISGRRKLFGDVKGFAGVPPTLMVKCLHKGFNHPGDLMAKIGSMQMFVKNNGSCEDIGPGAFPVNEVHKISVLDIRLANADRHAGNILISTVEDNDQSVLVPIDHGYCLPTSFEDCTFEWLYWPQARQPYSAETIGYIKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFAIGNLMCRESLNKESVIEEIVEEAFESVLPGTSEATLLDAVSQIMDQRLDKIFNSLF*