AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374290 MtrunA17_Chr3g0124811 96.939 490 15 0 1 490 1 490 0.0 984
Msa0374290 MtrunA17_Chr8g0384741 66.122 490 166 0 1 490 52 541 0.0 706
Msa0374290 MtrunA17_Chr1g0159811 78.897 417 88 0 8 424 6 422 0.0 699
Msa0374290 MtrunA17_Chr8g0372381 47.548 469 246 0 15 483 6 474 8.52e-166 477
Msa0374290 MtrunA17_Chr2g0328781 46.764 479 252 1 13 488 15 493 1.34e-159 462
Msa0374290 MtrunA17_Chr4g0032441 50.881 454 220 1 22 472 9 462 3.30e-146 427
Msa0374290 MtrunA17_Chr3g0129271 44.444 189 102 1 185 370 31 219 6.41e-51 174
Msa0374290 MtrunA17_Chr3g0118121 29.954 434 285 9 27 447 58 485 6.23e-40 150
Msa0374290 MtrunA17_Chr4g0059521 29.017 417 282 9 40 447 74 485 2.61e-39 149
Msa0374290 MtrunA17_Chr2g0294411 24.777 448 307 8 36 467 106 539 4.22e-39 149
Msa0374290 MtrunA17_Chr3g0118081 29.263 434 288 10 27 447 88 515 8.54e-38 145
Msa0374290 MtrunA17_Chr2g0310091 27.874 348 242 8 114 455 193 537 1.09e-32 130
Msa0374290 MtrunA17_Chr8g0365221 26.790 433 299 11 26 448 108 532 5.22e-30 123
Msa0374290 MtrunA17_Chr4g0059221 26.991 452 298 13 14 448 99 535 1.11e-29 122
Msa0374290 MtrunA17_Chr8g0390651 28.070 342 230 9 117 448 159 494 1.64e-27 115
Msa0374290 MtrunA17_Chr3g0117861 27.212 452 297 14 14 448 97 533 4.75e-27 114
Msa0374290 MtrunA17_Chr4g0074171 28.743 334 229 7 118 448 158 485 4.50e-26 110
Msa0374290 MtrunA17_Chr8g0390631 29.275 345 222 11 117 448 150 485 1.17e-25 109
Msa0374290 MtrunA17_Chr6g0485301 28.319 339 233 8 117 448 158 493 4.56e-25 108
Msa0374290 MtrunA17_Chr6g0485311 27.515 338 235 8 117 447 156 490 5.60e-24 104
Msa0374290 MtrunA17_Chr1g0149961 25.000 460 318 12 5 448 37 485 1.78e-23 103
Msa0374290 MtrunA17_Chr4g0009161 42.202 109 59 2 185 289 116 224 3.36e-20 89.4
Msa0374290 MtrunA17_Chr1g0159821 52.778 72 34 0 10 81 8 79 1.72e-19 84.3
Msa0374290 MtrunA17_Chr2g0279751 28.710 310 196 10 115 408 147 447 2.10e-18 87.8
Msa0374290 MtrunA17_Chr4g0049641 27.036 307 205 8 115 408 174 474 2.39e-18 87.8
Msa0374290 MtrunA17_Chr2g0300801 25.685 292 194 12 118 393 155 439 3.55e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374290 AT1G44170.1 68.058 479 153 0 10 488 4 482 0.0 704
Msa0374290 AT1G44170.2 68.058 479 153 0 10 488 4 482 0.0 704
Msa0374290 AT4G34240.1 64.644 478 169 0 13 490 70 547 0.0 647
Msa0374290 AT4G34240.4 64.644 478 169 0 13 490 55 532 0.0 647
Msa0374290 AT1G44170.3 70.560 411 121 0 78 488 9 419 0.0 634
Msa0374290 AT4G34240.3 67.574 404 131 0 87 490 2 405 0.0 569
Msa0374290 AT4G36250.1 47.609 460 238 1 16 472 6 465 1.23e-162 469
Msa0374290 AT4G34240.2 66.667 321 107 0 13 333 70 390 1.03e-150 436
Msa0374290 AT3G66658.1 27.146 431 296 6 36 452 106 532 8.79e-44 162
Msa0374290 AT3G66658.2 27.361 413 282 6 36 434 106 514 2.61e-43 162
Msa0374290 AT1G74920.1 27.571 457 304 12 15 449 37 488 4.33e-42 157
Msa0374290 AT1G74920.2 28.810 420 284 10 40 449 69 483 9.40e-42 156
Msa0374290 AT3G48170.1 27.338 417 289 9 40 447 74 485 1.27e-36 142
Msa0374290 AT1G79440.1 28.824 340 233 8 114 447 184 520 1.37e-33 133
Msa0374290 AT1G23800.1 27.455 448 301 13 14 448 89 525 1.57e-33 133
Msa0374290 AT3G48000.1 26.549 452 300 14 14 448 93 529 1.22e-28 119
Msa0374290 AT3G24503.1 27.729 339 235 7 117 448 157 492 2.63e-27 115
Msa0374290 AT2G24270.3 28.144 334 231 7 118 448 158 485 9.19e-25 107
Msa0374290 AT2G24270.1 28.144 334 231 7 118 448 158 485 9.19e-25 107
Msa0374290 AT2G24270.4 28.144 334 231 7 118 448 158 485 9.37e-25 107
Msa0374290 AT2G24270.2 28.707 317 217 7 118 431 198 508 1.15e-24 107
Msa0374290 AT2G14170.2 27.378 347 228 12 117 447 139 477 5.21e-18 87.0
Msa0374290 AT2G14170.1 27.378 347 228 12 117 447 248 586 5.52e-18 87.4
Msa0374290 AT1G23800.2 30.078 256 155 9 14 253 89 336 3.90e-17 84.0
Msa0374290 AT2G14170.3 27.273 308 203 10 115 408 246 546 1.10e-16 83.2
Msa0374290 AT1G54100.2 21.453 289 210 8 118 393 154 438 1.58e-13 73.2
Msa0374290 AT1G54100.1 21.453 289 210 8 118 393 154 438 1.58e-13 73.2

Find 129 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCAATTCTGTCTTTA+AGG 0.114075 3_1:+73688052 None:intergenic
GCTATGTTACTATTGATTTC+TGG 0.128525 3_1:+73691236 None:intergenic
GGGAAAATTTCATACCAATT+TGG 0.160031 3_1:+73688146 None:intergenic
GTTTCTGGCAAGGTTGTTTA+TGG 0.170486 3_1:-73687933 Msa0374290:CDS
TCACTGCTGGCGAACTTATT+AGG 0.192129 3_1:-73688969 Msa0374290:CDS
GGAAAATTTCATACCAATTT+GGG 0.208738 3_1:+73688147 None:intergenic
ACAGAATTGGAAAGCTTCTT+TGG 0.227872 3_1:-73688044 Msa0374290:CDS
TTGGACGACGAGAAGGTTTC+TGG 0.237632 3_1:-73687948 Msa0374290:CDS
TGGTTCATACTTTGCCATTT+GGG 0.248058 3_1:-73687340 Msa0374290:CDS
GTGGTTCATACTTTGCCATT+TGG 0.266390 3_1:-73687341 Msa0374290:CDS
CTATGTTACTATTGATTTCT+GGG 0.296959 3_1:+73691237 None:intergenic
TTTGTTGTTATAACGTAATC+AGG 0.304335 3_1:+73688180 None:intergenic
CACTGCTGGCGAACTTATTA+GGG 0.310991 3_1:-73688968 Msa0374290:CDS
GATAAATCATTGGATTCTAT+TGG 0.315485 3_1:+73688014 None:intergenic
TGATTTCTGGGATAATAATA+AGG 0.317495 3_1:+73691249 None:intergenic
ACAGCTAGACGGATAATTTC+AGG 0.342418 3_1:-73688240 Msa0374290:CDS
ACACCTTACACCAGTCGTTC+TGG 0.352826 3_1:-73688623 Msa0374290:CDS
CTAGTCGCCGGCGATGTTAC+TGG 0.358446 3_1:-73687164 Msa0374290:CDS
GGATTCAAATGTCAATTTAG+AGG 0.363970 3_1:-73688572 Msa0374290:intron
CTGAGGGTGAGCTTTAATTC+TGG 0.376691 3_1:-73691130 Msa0374290:CDS
TTCTAACCACTTTGCTCGCT+TGG 0.378374 3_1:-73687979 Msa0374290:CDS
TGATGCCTTAAAGACAGAAT+TGG 0.379258 3_1:-73688057 Msa0374290:CDS
AACACTACACCAAGTGGTTC+AGG 0.380052 3_1:+73689475 None:intergenic
TCCAGCCTCGTCTTCACTGC+TGG 0.400434 3_1:-73688982 Msa0374290:CDS
TTCTGCTTTGTATCAGTGTA+AGG 0.401680 3_1:+73687200 None:intergenic
GGAGTTGGTGACAGTGGAAT+GGG 0.406759 3_1:-73687317 Msa0374290:CDS
TTGAAAACAAATTAAAGCTT+AGG 0.408744 3_1:+73687115 None:intergenic
TACAATAAAATCAGAACAAA+TGG 0.409251 3_1:+73687065 None:intergenic
GAAGATGGTTGATGAACAAC+AGG 0.411988 3_1:-73691059 Msa0374290:CDS
GGGAGTTGGTGACAGTGGAA+TGG 0.415308 3_1:-73687318 Msa0374290:CDS
CTGTCCCTTGATCCAGTTGT+TGG 0.425314 3_1:-73689053 Msa0374290:CDS
CACAATGCGCGATAAATCAT+TGG 0.432655 3_1:+73688004 None:intergenic
TACAAATGACAACAAGTTCA+AGG 0.442505 3_1:-73687521 Msa0374290:CDS
GCTGCTATAGCTCCAACAAC+TGG 0.444023 3_1:+73689041 None:intergenic
ACACCAGTCGTTCTGGAGCT+TGG 0.446970 3_1:-73688616 Msa0374290:CDS
ATAATGAGTGAGGAGATCTT+TGG 0.458834 3_1:-73687762 Msa0374290:CDS
TGCTCGCTTGGTAAAGATGT+TGG 0.468945 3_1:-73687967 Msa0374290:CDS
TAGCAATAGTATAAAATGTC+GGG 0.472828 3_1:-73691217 Msa0374290:exon
TTTGTGAAGAATGTTTCTGC+TGG 0.473206 3_1:-73687493 Msa0374290:CDS
GGTACTATTTCAGCTGAAGA+AGG 0.475298 3_1:+73689496 None:intergenic
ACAATGGATGGCCCCAGAAA+AGG 0.476780 3_1:-73689654 Msa0374290:intron
ACATTTGAATCCACAACAGT+TGG 0.479478 3_1:+73688583 None:intergenic
GGTTGTTTATGGAGGTGAAA+AGG 0.487907 3_1:-73687922 Msa0374290:CDS
CTGCATTGTTGCAACAAAAG+TGG 0.494247 3_1:-73688890 Msa0374290:CDS
CTTGGAACAGGTGAACAAGC+TGG 0.495328 3_1:-73687599 Msa0374290:intron
CGGAGAAGCGGCGTCGTCGT+TGG 0.495817 3_1:-73691161 Msa0374290:CDS
TAGCTCCAACAACTGGATCA+AGG 0.496212 3_1:+73689048 None:intergenic
TGGAGCGTCTAATACAATAG+TGG 0.501825 3_1:+73687797 None:intergenic
GGTTCATACTTTGCCATTTG+GGG 0.508394 3_1:-73687339 Msa0374290:CDS
GACGGATAATTTCAGGAAAG+TGG 0.508972 3_1:-73688233 Msa0374290:CDS
CAGAATTAAAGCTCACCCTC+AGG 0.511369 3_1:+73691131 None:intergenic
TTACGGGTGATGCATCGATA+AGG 0.514070 3_1:-73687229 Msa0374290:CDS
GCTCCAGAACGACTGGTGTA+AGG 0.516414 3_1:+73688620 None:intergenic
TGAAGATCAGTCACAGAAGA+AGG 0.516470 3_1:-73691194 Msa0374290:CDS
GTAAATAAATATGCAGCAAG+TGG 0.517979 3_1:+73687541 None:intergenic
GCCAGCAGTGAAGACGAGGC+TGG 0.518366 3_1:+73688981 None:intergenic
AACGTAATCAGGAGAAATGC+AGG 0.519634 3_1:+73688191 None:intergenic
AGGAAAATCTCCAACTGTTG+TGG 0.520349 3_1:-73688593 Msa0374290:CDS
ATCTATAAGAGTTGTGGAGG+GGG 0.520366 3_1:-73688928 Msa0374290:CDS
CAGAAGAAGGTGGTGTTTGA+CGG 0.522711 3_1:-73691181 Msa0374290:CDS
AGCGGCGTCGTCGTTGGTGA+AGG 0.523107 3_1:-73691155 Msa0374290:CDS
CCTCCAAGCTCCAGAACGAC+TGG 0.525093 3_1:+73688613 None:intergenic
TTTGTGAGTAAAAGCGTCAA+AGG 0.526185 3_1:+73687274 None:intergenic
GGAAAGTGGTGCTGTAACAA+TGG 0.528505 3_1:-73688219 Msa0374290:CDS
CTCATCTATAAGAGTTGTGG+AGG 0.535901 3_1:-73688931 Msa0374290:CDS
CCAGTCGTTCTGGAGCTTGG+AGG 0.536552 3_1:-73688613 Msa0374290:CDS
ATAGCAATAGTATAAAATGT+CGG 0.538437 3_1:-73691218 Msa0374290:exon
ACAAATGGTACGGCACTAGC+AGG 0.541440 3_1:+73687080 None:intergenic
GTTGTTGGAGCTATAGCAGC+CGG 0.541671 3_1:-73689038 Msa0374290:CDS
TGCTTTGTATCAGTGTAAGG+CGG 0.541950 3_1:+73687203 None:intergenic
GTAAGACACGAAGTTATGAA+TGG 0.543765 3_1:-73691108 Msa0374290:CDS
AGCTCCAACAACTGGATCAA+GGG 0.544547 3_1:+73689049 None:intergenic
TCTGGCAAGGTTGTTTATGG+AGG 0.544720 3_1:-73687930 Msa0374290:CDS
TTATGAATGGAGAGTATCGC+AGG 0.547189 3_1:-73691095 Msa0374290:CDS
TACAAAGCAGAAATTGATGA+AGG 0.548509 3_1:-73687189 Msa0374290:CDS
TTTATTCTTACCGTGATGAT+GGG 0.548703 3_1:+73687729 None:intergenic
GTGAAGAATGTTTCTGCTGG+GGG 0.549524 3_1:-73687490 Msa0374290:CDS
TGCATTGTTGCAACAAAAGT+GGG 0.550398 3_1:-73688889 Msa0374290:CDS
TAGTGTTAGTCATCTCTGCT+TGG 0.552108 3_1:-73689459 Msa0374290:CDS
TAACTCATCTATAAGAGTTG+TGG 0.553446 3_1:-73688934 Msa0374290:CDS
CGACGAGAAGGTTTCTGGCA+AGG 0.555363 3_1:-73687943 Msa0374290:CDS
TTTCAAGCGGTGGTTTAGCA+AGG 0.558890 3_1:+73691008 None:intergenic
CTCATTATCAGAGAATCTTG+TGG 0.559354 3_1:+73687777 None:intergenic
TTGTGAAGAATGTTTCTGCT+GGG 0.560631 3_1:-73687492 Msa0374290:CDS
TTGATGAAGGCTCTAGTCGC+CGG 0.564772 3_1:-73687176 Msa0374290:CDS
GAGGCTGGAGCAATTTCTGA+TGG 0.566074 3_1:+73688996 None:intergenic
CGTCGTTGGTGAAGGACCTG+AGG 0.569144 3_1:-73691147 Msa0374290:CDS
GAAAATTTCATACCAATTTG+GGG 0.571184 3_1:+73688148 None:intergenic
CGCTGAAGGAATTGAAACAA+TGG 0.574396 3_1:-73689670 Msa0374290:CDS
GGAGCGTCTAATACAATAGT+GGG 0.580198 3_1:+73687798 None:intergenic
GTGGAATGGGTGCATACCAT+GGG 0.581183 3_1:-73687304 Msa0374290:CDS
GCTTTGTATCAGTGTAAGGC+GGG 0.584751 3_1:+73687204 None:intergenic
GTTCATACTTTGCCATTTGG+GGG 0.589580 3_1:-73687338 Msa0374290:CDS
TAAAATCAGAACAAATGGTA+CGG 0.592527 3_1:+73687070 None:intergenic
AAAGATGTTGGACGACGAGA+AGG 0.593143 3_1:-73687955 Msa0374290:CDS
GAAGGAATTGAAACAATGGA+TGG 0.595708 3_1:-73689666 Msa0374290:CDS
ACCGTGATGATGGGAAGCAA+TGG 0.595840 3_1:+73687738 None:intergenic
GGTACGGCACTAGCAGGTAT+CGG 0.599656 3_1:+73687086 None:intergenic
CAGGTAATGGAAAAGTGGGA+CGG 0.603039 3_1:-73688669 Msa0374290:CDS
CTCATGTGAAGTCACGCTGA+AGG 0.604871 3_1:-73689684 Msa0374290:CDS
TCATCTATAAGAGTTGTGGA+GGG 0.608439 3_1:-73688930 Msa0374290:CDS
TTTACTAGGTTACAGCTAGA+CGG 0.610366 3_1:-73688251 Msa0374290:intron
AGCTTCGATTTGATCAACGC+AGG 0.611901 3_1:-73687571 Msa0374290:CDS
GGTGGTGTTTGACGGAGAAG+CGG 0.613325 3_1:-73691173 Msa0374290:CDS
TAGACAACAGTTTCAAGCGG+TGG 0.617970 3_1:+73690998 None:intergenic
GTCGTTGGTGAAGGACCTGA+GGG 0.624859 3_1:-73691146 Msa0374290:CDS
TCCATTGCTTCCCATCATCA+CGG 0.625141 3_1:-73687739 Msa0374290:intron
GAACTTATTAGGGAGGTACA+TGG 0.626641 3_1:-73688958 Msa0374290:CDS
AAAATTTCATACCAATTTGG+GGG 0.628857 3_1:+73688149 None:intergenic
GTTCGCCAGCAGTGAAGACG+AGG 0.630975 3_1:+73688977 None:intergenic
AACAACACCAGTAACATCGC+CGG 0.631565 3_1:+73687157 None:intergenic
CATCTATAAGAGTTGTGGAG+GGG 0.632599 3_1:-73688929 Msa0374290:CDS
GAAATAGTACCTGAACCACT+TGG 0.636077 3_1:-73689484 Msa0374290:CDS
AGATTCTCTGATAATGAGTG+AGG 0.639886 3_1:-73687772 Msa0374290:CDS
ATGACTAACACTACACCAAG+TGG 0.646296 3_1:+73689469 None:intergenic
GAGATAAACTGAGAGCAAAG+TGG 0.647026 3_1:+73691271 None:intergenic
CAATGCAGTAGTTTCATCAA+CGG 0.649582 3_1:+73688905 None:intergenic
TGTGAAGAATGTTTCTGCTG+GGG 0.658052 3_1:-73687491 Msa0374290:CDS
TGCTGGCGAACTTATTAGGG+AGG 0.664145 3_1:-73688965 Msa0374290:CDS
AAAAGTGGGACGGATAGTGA+TGG 0.666797 3_1:-73688659 Msa0374290:CDS
AGTGGGACGGATAGTGATGG+CGG 0.669702 3_1:-73688656 Msa0374290:CDS
AGTGGAATGGGTGCATACCA+TGG 0.672625 3_1:-73687305 Msa0374290:CDS
TCTTTACCAAGCGAGCAAAG+TGG 0.678259 3_1:+73687973 None:intergenic
GCTTGAAACTGTTGTCTACG+AGG 0.679853 3_1:-73690993 Msa0374290:intron
TATAGCAGCCGGAAACGCCG+TGG 0.683688 3_1:-73689027 Msa0374290:CDS
TCGTAGACAACAGTTTCAAG+CGG 0.691579 3_1:+73690995 None:intergenic
CGTCAAAGGAGAATTTCCCA+TGG 0.693948 3_1:+73687288 None:intergenic
ATGCATCACCCGTAAAACCA+CGG 0.701105 3_1:+73687237 None:intergenic
AGATCAGTCACAGAAGAAGG+TGG 0.702169 3_1:-73691191 Msa0374290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATATATATATGATTTTTA+TGG - chr3_1:73687333-73687352 Msa0374290:CDS 10.0%
!!! TTTTATGTTTTCTTTAATAA+AGG - chr3_1:73687569-73687588 Msa0374290:CDS 10.0%
!!! ATTCAACTTAAAATATTTTT+GGG - chr3_1:73688337-73688356 Msa0374290:intron 10.0%
!!! TAAATCTAAATCAATTTGTT+AGG - chr3_1:73687836-73687855 Msa0374290:intron 15.0%
!!! GATTCAACTTAAAATATTTT+TGG - chr3_1:73688336-73688355 Msa0374290:intron 15.0%
!! TAGATTATTAAAGAAACTAA+AGG + chr3_1:73689163-73689182 None:intergenic 15.0%
!!! TAAAGTTAAATTGTTTTCAA+TGG + chr3_1:73689804-73689823 None:intergenic 15.0%
!!! TAAATTAATTTGTGTTTACT+AGG - chr3_1:73690012-73690031 Msa0374290:intron 15.0%
!! ATAGCAATAGTATAAAATGT+CGG - chr3_1:73687059-73687078 Msa0374290:three_prime_UTR 20.0%
!!! ATAAACATCATAAGTTTTCA+AGG - chr3_1:73687445-73687464 Msa0374290:intron 20.0%
!!! TATTCTTGAGATTTTTCATT+TGG - chr3_1:73687474-73687493 Msa0374290:CDS 20.0%
!!! TATGTTTTCTTTAATAAAGG+AGG - chr3_1:73687572-73687591 Msa0374290:CDS 20.0%
!!! AAAGCATTTTTCTTTTTGAA+GGG + chr3_1:73687618-73687637 None:intergenic 20.0%
!!! AAAAGCATTTTTCTTTTTGA+AGG + chr3_1:73687619-73687638 None:intergenic 20.0%
!!! TTCACCTTCTTTTTTTTTTA+CGG - chr3_1:73687637-73687656 Msa0374290:intron 20.0%
!!! TTCTGGAAAATATAAGTAAA+AGG - chr3_1:73687958-73687977 Msa0374290:CDS 20.0%
!!! TAAAAGGTGTATGTAAAATA+AGG - chr3_1:73687974-73687993 Msa0374290:CDS 20.0%
!!! AAAAGGTGTATGTAAAATAA+GGG - chr3_1:73687975-73687994 Msa0374290:CDS 20.0%
!! AAAAATAAACTTTGATTGAC+TGG - chr3_1:73688009-73688028 Msa0374290:CDS 20.0%
!! TTTAAAAATTTAGTATCCCT+TGG - chr3_1:73688360-73688379 Msa0374290:intron 20.0%
!!! TATTTTGAATTTATGGAAAG+CGG + chr3_1:73688406-73688425 None:intergenic 20.0%
!!! GTTACTCTATTTTGAATTTA+TGG + chr3_1:73688413-73688432 None:intergenic 20.0%
!! TACAAATGTTACAAAATGTT+CGG + chr3_1:73688435-73688454 None:intergenic 20.0%
!!! GTAACTAAACAAACATATTT+TGG - chr3_1:73688452-73688471 Msa0374290:intron 20.0%
!! AGTTCCTTTAATAATATTTC+AGG - chr3_1:73688735-73688754 Msa0374290:intron 20.0%
!! TTAGCCTGAAATATTATTAA+AGG + chr3_1:73688742-73688761 None:intergenic 20.0%
!! AAGATATCGTGAAAAATTTA+TGG + chr3_1:73688991-73689010 None:intergenic 20.0%
!!! TTTACCTTTTGTTATACAAA+TGG - chr3_1:73689032-73689051 Msa0374290:CDS 20.0%
!!! ATGGTTATGAATTGTTATTT+TGG - chr3_1:73689464-73689483 Msa0374290:CDS 20.0%
!! AAAATTCACAATACCAATAA+TGG + chr3_1:73689511-73689530 None:intergenic 20.0%
!!! TAAGTAATTACTTGATTTTC+AGG - chr3_1:73689589-73689608 Msa0374290:intron 20.0%
!!! ATTAAATTTTTCATCCAATC+AGG - chr3_1:73689903-73689922 Msa0374290:intron 20.0%
!! TTAAGTCAATAATGAGTTAA+GGG + chr3_1:73689995-73690014 None:intergenic 20.0%
!! TTTAAGTCAATAATGAGTTA+AGG + chr3_1:73689996-73690015 None:intergenic 20.0%
!!! TTGTATCCAATTTAAAACAA+TGG - chr3_1:73690627-73690646 Msa0374290:intron 20.0%
!!! TGTATCCAATTTAAAACAAT+GGG - chr3_1:73690628-73690647 Msa0374290:intron 20.0%
!! TTGAAAACAAATTAAAGCTT+AGG + chr3_1:73691165-73691184 None:intergenic 20.0%
!! TACAATAAAATCAGAACAAA+TGG + chr3_1:73691215-73691234 None:intergenic 20.0%
!!! TAAAATAAACGTTTTAAGAG+AGG - chr3_1:73691273-73691292 Msa0374290:five_prime_UTR 20.0%
!!! TGATTTCTGGGATAATAATA+AGG + chr3_1:73687031-73687050 None:intergenic 25.0%
!!! CTATGTTACTATTGATTTCT+GGG + chr3_1:73687043-73687062 None:intergenic 25.0%
! TAGCAATAGTATAAAATGTC+GGG - chr3_1:73687060-73687079 Msa0374290:three_prime_UTR 25.0%
! AGCAACTTAAACATGAAATT+AGG + chr3_1:73687312-73687331 None:intergenic 25.0%
! AATCAAAGTAATTGTATCGT+CGG + chr3_1:73687525-73687544 None:intergenic 25.0%
! TAAAATATTGACGTCATACA+AGG + chr3_1:73687554-73687573 None:intergenic 25.0%
! TGTTCCGTAAAAAAAAAAGA+AGG + chr3_1:73687644-73687663 None:intergenic 25.0%
!!! CATAATAAATTGGTTTGGTT+TGG - chr3_1:73687799-73687818 Msa0374290:CDS 25.0%
! CACTATATATCGAAAACTAT+TGG + chr3_1:73687889-73687908 None:intergenic 25.0%
!!! TGTTTTTTACAATGAGTAGT+TGG - chr3_1:73688045-73688064 Msa0374290:CDS 25.0%
! TATACTATTCTCAACTACAT+TGG - chr3_1:73688314-73688333 Msa0374290:intron 25.0%
! TAAGCCATTTGTATAACAAA+AGG + chr3_1:73689039-73689058 None:intergenic 25.0%
!! ACAAAATTTTGTATACAGGT+TGG - chr3_1:73689411-73689430 Msa0374290:intron 25.0%
!!! ATTACTTGATTTTCAGGTAA+TGG - chr3_1:73689595-73689614 Msa0374290:intron 25.0%
!!! CAATTTAGAGGTATTGATTA+AGG - chr3_1:73689717-73689736 Msa0374290:intron 25.0%
! TTAATAAGTCAATCCAAACA+TGG + chr3_1:73689743-73689762 None:intergenic 25.0%
! TGACTGGAAAATAAAAAAGA+AGG + chr3_1:73689942-73689961 None:intergenic 25.0%
! TAAGTCAATAATGAGTTAAG+GGG + chr3_1:73689994-73690013 None:intergenic 25.0%
!!! TTTGTTGTTATAACGTAATC+AGG + chr3_1:73690100-73690119 None:intergenic 25.0%
! AAAATTTCATACCAATTTGG+GGG + chr3_1:73690131-73690150 None:intergenic 25.0%
! GAAAATTTCATACCAATTTG+GGG + chr3_1:73690132-73690151 None:intergenic 25.0%
! GGAAAATTTCATACCAATTT+GGG + chr3_1:73690133-73690152 None:intergenic 25.0%
! GATAAATCATTGGATTCTAT+TGG + chr3_1:73690266-73690285 None:intergenic 25.0%
!! TTTTATATACTGCAATGCAA+TGG - chr3_1:73690423-73690442 Msa0374290:intron 25.0%
!! GTATCCAATTTAAAACAATG+GGG - chr3_1:73690629-73690648 Msa0374290:intron 25.0%
! ATAATACTTTCTTTCTTGCT+TGG - chr3_1:73690660-73690679 Msa0374290:intron 25.0%
! ATAAGTAACATTGCATGATA+AGG + chr3_1:73690890-73690909 None:intergenic 25.0%
! TAAAATCAGAACAAATGGTA+CGG + chr3_1:73691210-73691229 None:intergenic 25.0%
!!! TGTGCTTTTTAAAAGCAAAT+TGG - chr3_1:73691298-73691317 Msa0374290:five_prime_UTR 25.0%
!! GCTATGTTACTATTGATTTC+TGG + chr3_1:73687044-73687063 None:intergenic 30.0%
! ATTTGGAGTCACTATTATGA+TGG - chr3_1:73687491-73687510 Msa0374290:CDS 30.0%
AATCACGTAAATACAAGTCA+CGG - chr3_1:73687702-73687721 Msa0374290:intron 30.0%
ACTTCCTAGGCATAATAAAT+TGG - chr3_1:73687789-73687808 Msa0374290:CDS 30.0%
CAAACCAATTTATTATGCCT+AGG + chr3_1:73687796-73687815 None:intergenic 30.0%
CTAGGCATAATAAATTGGTT+TGG - chr3_1:73687794-73687813 Msa0374290:CDS 30.0%
AATCCTAATAGCCATAACTT+TGG - chr3_1:73688088-73688107 Msa0374290:intron 30.0%
TATTGTGTCAACCAAAGTTA+TGG + chr3_1:73688102-73688121 None:intergenic 30.0%
TTAGTAAAAAGGAAAGAGGT+TGG + chr3_1:73688262-73688281 None:intergenic 30.0%
CCATTTAGTAAAAAGGAAAG+AGG + chr3_1:73688266-73688285 None:intergenic 30.0%
! CCTCTTTCCTTTTTACTAAA+TGG - chr3_1:73688263-73688282 Msa0374290:intron 30.0%
ATTGAGTGAAATGAAACCAA+GGG + chr3_1:73688379-73688398 None:intergenic 30.0%
AATACAACTAAGCAATTGAC+AGG - chr3_1:73688478-73688497 Msa0374290:intron 30.0%
!!! ATGTACTTTGTTTTGCAGAT+TGG - chr3_1:73688558-73688577 Msa0374290:intron 30.0%
! GGTAAAATAAACCTTTTCTG+GGG + chr3_1:73688637-73688656 None:intergenic 30.0%
! GGGTAAAATAAACCTTTTCT+GGG + chr3_1:73688638-73688657 None:intergenic 30.0%
TAACTCAAATACAACCAACA+AGG + chr3_1:73689130-73689149 None:intergenic 30.0%
TAACTCATCTATAAGAGTTG+TGG - chr3_1:73689343-73689362 Msa0374290:intron 30.0%
! TGGGACAAAATTTTGTATAC+AGG - chr3_1:73689407-73689426 Msa0374290:intron 30.0%
!!! ATTTTCAGGTAATGGAAAAG+TGG - chr3_1:73689603-73689622 Msa0374290:intron 30.0%
!!! TTTTCAGGTAATGGAAAAGT+GGG - chr3_1:73689604-73689623 Msa0374290:intron 30.0%
GGATTCAAATGTCAATTTAG+AGG - chr3_1:73689705-73689724 Msa0374290:intron 30.0%
TCATATTGCTTTCATGTGTA+AGG + chr3_1:73689850-73689869 None:intergenic 30.0%
TGATATAACTAGTTACTGAC+TGG + chr3_1:73689958-73689977 None:intergenic 30.0%
GGGAAAATTTCATACCAATT+TGG + chr3_1:73690134-73690153 None:intergenic 30.0%
! TTTAGAACTCTTAACAACGA+GGG + chr3_1:73690154-73690173 None:intergenic 30.0%
! ATTTAGAACTCTTAACAACG+AGG + chr3_1:73690155-73690174 None:intergenic 30.0%
GTCTTTGTGTATCTAATGTT+TGG - chr3_1:73690179-73690198 Msa0374290:intron 30.0%
CCTACTAAACTTGAATTAAG+AGG + chr3_1:73690403-73690422 None:intergenic 30.0%
! CCTCTTAATTCAAGTTTAGT+AGG - chr3_1:73690400-73690419 Msa0374290:intron 30.0%
TTTATTCTTACCGTGATGAT+GGG + chr3_1:73690551-73690570 None:intergenic 30.0%
! TTTTATTCTTACCGTGATGA+TGG + chr3_1:73690552-73690571 None:intergenic 30.0%
GTAAATAAATATGCAGCAAG+TGG + chr3_1:73690739-73690758 None:intergenic 30.0%
TACAAATGACAACAAGTTCA+AGG - chr3_1:73690756-73690775 Msa0374290:intron 30.0%
GATAAGGATATATGCATTCA+TGG + chr3_1:73690874-73690893 None:intergenic 30.0%
TACAAAGCAGAAATTGATGA+AGG - chr3_1:73691088-73691107 Msa0374290:CDS 30.0%
GTAAGACACGAAGTTATGAA+TGG - chr3_1:73687169-73687188 Msa0374290:CDS 35.0%
AAGTAATTGTATCGTCGGAA+CGG + chr3_1:73687520-73687539 None:intergenic 35.0%
AGGATGCTTCTTAAAAGACA+GGG - chr3_1:73687730-73687749 Msa0374290:intron 35.0%
!! GAAGGCGCTAATTTATTCAA+TGG - chr3_1:73687757-73687776 Msa0374290:CDS 35.0%
ATGGAGGAATAAAACTTCCT+AGG - chr3_1:73687776-73687795 Msa0374290:CDS 35.0%
! TTGTGAGAACTAAAGTGTTC+TGG - chr3_1:73687941-73687960 Msa0374290:CDS 35.0%
CAACCAAAGTTATGGCTATT+AGG + chr3_1:73688094-73688113 None:intergenic 35.0%
GTAACTTGAAAATGCTATGC+AGG + chr3_1:73688174-73688193 None:intergenic 35.0%
! TAATTTTAAGCACGGTCAAG+AGG + chr3_1:73688229-73688248 None:intergenic 35.0%
ACGGAGTCCATTTAGTAAAA+AGG + chr3_1:73688273-73688292 None:intergenic 35.0%
CATTGAGTGAAATGAAACCA+AGG + chr3_1:73688380-73688399 None:intergenic 35.0%
GAAGGAATTGAAACAATGGA+TGG - chr3_1:73688611-73688630 Msa0374290:CDS 35.0%
! GGGGTAAAATAAACCTTTTC+TGG + chr3_1:73688639-73688658 None:intergenic 35.0%
CTGAAGGTCAACTTACAAAA+TGG + chr3_1:73688850-73688869 None:intergenic 35.0%
CTAAACAGTCTCAAGAATGT+TGG + chr3_1:73688911-73688930 None:intergenic 35.0%
TTAACAGAACAGAACCTTGT+TGG - chr3_1:73689113-73689132 Msa0374290:intron 35.0%
!!! TTCTGATGGTTTTAGAACCA+CGG + chr3_1:73689270-73689289 None:intergenic 35.0%
TCATCTATAAGAGTTGTGGA+GGG - chr3_1:73689347-73689366 Msa0374290:intron 35.0%
CAATGCAGTAGTTTCATCAA+CGG + chr3_1:73689375-73689394 None:intergenic 35.0%
TGCATTGTTGCAACAAAAGT+GGG - chr3_1:73689388-73689407 Msa0374290:intron 35.0%
!! TATCACCAGTCTGTTTTTCT+TGG - chr3_1:73689441-73689460 Msa0374290:intron 35.0%
!!! TTTTGGTTTTGTCGTGCAAT+TGG - chr3_1:73689481-73689500 Msa0374290:CDS 35.0%
TGCAATTGGTATGCCATTAT+TGG - chr3_1:73689495-73689514 Msa0374290:CDS 35.0%
ACATTTGAATCCACAACAGT+TGG + chr3_1:73689697-73689716 None:intergenic 35.0%
!! GTATTGATTAAGGCCATGTT+TGG - chr3_1:73689727-73689746 Msa0374290:intron 35.0%
! ATTGTTTTCAATGGCTATCC+AGG + chr3_1:73689795-73689814 None:intergenic 35.0%
TCAATAATGAGTTAAGGGGA+AGG + chr3_1:73689990-73690009 None:intergenic 35.0%
TTTACTAGGTTACAGCTAGA+CGG - chr3_1:73690026-73690045 Msa0374290:intron 35.0%
TGATGCCTTAAAGACAGAAT+TGG - chr3_1:73690220-73690239 Msa0374290:intron 35.0%
GCTTTCCAATTCTGTCTTTA+AGG + chr3_1:73690228-73690247 None:intergenic 35.0%
ACAGAATTGGAAAGCTTCTT+TGG - chr3_1:73690233-73690252 Msa0374290:intron 35.0%
TCTTGACACAAGCAAATTAC+AGG - chr3_1:73690447-73690466 Msa0374290:intron 35.0%
CTCATTATCAGAGAATCTTG+TGG + chr3_1:73690503-73690522 None:intergenic 35.0%
! AGATTCTCTGATAATGAGTG+AGG - chr3_1:73690505-73690524 Msa0374290:intron 35.0%
ATAATGAGTGAGGAGATCTT+TGG - chr3_1:73690515-73690534 Msa0374290:intron 35.0%
!!! GATGCCCCATTGTTTTAAAT+TGG + chr3_1:73690636-73690655 None:intergenic 35.0%
! TTTGTGAAGAATGTTTCTGC+TGG - chr3_1:73690784-73690803 Msa0374290:intron 35.0%
! TTGTGAAGAATGTTTCTGCT+GGG - chr3_1:73690785-73690804 Msa0374290:intron 35.0%
GGATATATGCATTCATGGAA+AGG + chr3_1:73690869-73690888 None:intergenic 35.0%
! TGGTTCATACTTTGCCATTT+GGG - chr3_1:73690937-73690956 Msa0374290:intron 35.0%
!! TTTGTGAGTAAAAGCGTCAA+AGG + chr3_1:73691006-73691025 None:intergenic 35.0%
! TGACGCTTTTACTCACAAAA+AGG - chr3_1:73691007-73691026 Msa0374290:CDS 35.0%
!! AGTTCTTTACCGTGGTTTTA+CGG - chr3_1:73691031-73691050 Msa0374290:CDS 35.0%
TTCTGCTTTGTATCAGTGTA+AGG + chr3_1:73691080-73691099 None:intergenic 35.0%
GAGATAAACTGAGAGCAAAG+TGG + chr3_1:73687009-73687028 None:intergenic 40.0%
TGAAGATCAGTCACAGAAGA+AGG - chr3_1:73687083-73687102 Msa0374290:three_prime_UTR 40.0%
!! TTATGAATGGAGAGTATCGC+AGG - chr3_1:73687182-73687201 Msa0374290:CDS 40.0%
!! GGTGAAAGCTCTTTTGAAGA+TGG - chr3_1:73687203-73687222 Msa0374290:CDS 40.0%
!! GAAGATGGTTGATGAACAAC+AGG - chr3_1:73687218-73687237 Msa0374290:CDS 40.0%
TCGTAGACAACAGTTTCAAG+CGG + chr3_1:73687285-73687304 None:intergenic 40.0%
AAATACAAGTCACGGAAACC+AGG - chr3_1:73687710-73687729 Msa0374290:intron 40.0%
!!! CTGTCTTTTAAGAAGCATCC+TGG + chr3_1:73687731-73687750 None:intergenic 40.0%
CAGGATGCTTCTTAAAAGAC+AGG - chr3_1:73687729-73687748 Msa0374290:intron 40.0%
CTTAAAAGACAGGGACAAGA+AGG - chr3_1:73687739-73687758 Msa0374290:intron 40.0%
GGCGCTAATTTATTCAATGG+AGG - chr3_1:73687760-73687779 Msa0374290:CDS 40.0%
TGAAAATGCTATGCAGGCAT+TGG + chr3_1:73688168-73688187 None:intergenic 40.0%
! TAGGCGGCTAATTTTAAGCA+CGG + chr3_1:73688237-73688256 None:intergenic 40.0%
AAAAGGAAAGAGGTTGGACT+AGG + chr3_1:73688256-73688275 None:intergenic 40.0%
! CGAGTTTTTCTCAACTGCTA+CGG + chr3_1:73688292-73688311 None:intergenic 40.0%
CGTAGCAGTTGAGAAAAACT+CGG - chr3_1:73688290-73688309 Msa0374290:intron 40.0%
GTACATCAGTGAAGAGTAGA+AGG + chr3_1:73688544-73688563 None:intergenic 40.0%
CGCTGAAGGAATTGAAACAA+TGG - chr3_1:73688607-73688626 Msa0374290:CDS 40.0%
CTTCTCAGCTGAAGAAATTG+GGG + chr3_1:73688658-73688677 None:intergenic 40.0%
CCTTCTCAGCTGAAGAAATT+GGG + chr3_1:73688659-73688678 None:intergenic 40.0%
TCCTTCTCAGCTGAAGAAAT+TGG + chr3_1:73688660-73688679 None:intergenic 40.0%
GGTACTATTTCAGCTGAAGA+AGG + chr3_1:73688784-73688803 None:intergenic 40.0%
GAAATAGTACCTGAACCACT+TGG - chr3_1:73688793-73688812 Msa0374290:intron 40.0%
ATGACTAACACTACACCAAG+TGG + chr3_1:73688811-73688830 None:intergenic 40.0%
TAGTGTTAGTCATCTCTGCT+TGG - chr3_1:73688818-73688837 Msa0374290:intron 40.0%
AAGTTGACCTTCAGCATGAT+TGG - chr3_1:73688856-73688875 Msa0374290:intron 40.0%
AGTCAAACCAATCATGCTGA+AGG + chr3_1:73688866-73688885 None:intergenic 40.0%
! GAACTTATTAGGGAGGTACA+TGG - chr3_1:73689319-73689338 Msa0374290:intron 40.0%
CTCATCTATAAGAGTTGTGG+AGG - chr3_1:73689346-73689365 Msa0374290:intron 40.0%
CATCTATAAGAGTTGTGGAG+GGG - chr3_1:73689348-73689367 Msa0374290:intron 40.0%
ATCTATAAGAGTTGTGGAGG+GGG - chr3_1:73689349-73689368 Msa0374290:intron 40.0%
CTGCATTGTTGCAACAAAAG+TGG - chr3_1:73689387-73689406 Msa0374290:intron 40.0%
!! ACCAGTCTGTTTTTCTTGGA+TGG - chr3_1:73689445-73689464 Msa0374290:intron 40.0%
ACCATCCAAGAAAAACAGAC+TGG + chr3_1:73689449-73689468 None:intergenic 40.0%
AGGAAAATCTCCAACTGTTG+TGG - chr3_1:73689684-73689703 Msa0374290:CDS 40.0%
! GTTATTTCCTTCAGTTCTCC+TGG - chr3_1:73689774-73689793 Msa0374290:intron 40.0%
GCTAAGACTTAGAACCTGAT+TGG + chr3_1:73689920-73689939 None:intergenic 40.0%
ACAGCTAGACGGATAATTTC+AGG - chr3_1:73690037-73690056 Msa0374290:intron 40.0%
GACGGATAATTTCAGGAAAG+TGG - chr3_1:73690044-73690063 Msa0374290:intron 40.0%
AACGTAATCAGGAGAAATGC+AGG + chr3_1:73690089-73690108 None:intergenic 40.0%
AAAAGACTTTGCCCCCAAAT+TGG - chr3_1:73690117-73690136 Msa0374290:intron 40.0%
CACAATGCGCGATAAATCAT+TGG + chr3_1:73690276-73690295 None:intergenic 40.0%
!! GTTTCTGGCAAGGTTGTTTA+TGG - chr3_1:73690344-73690363 Msa0374290:intron 40.0%
GGTTGTTTATGGAGGTGAAA+AGG - chr3_1:73690355-73690374 Msa0374290:intron 40.0%
TGACACAAGCAAATTACAGG+AGG - chr3_1:73690450-73690469 Msa0374290:intron 40.0%
! GGAGCGTCTAATACAATAGT+GGG + chr3_1:73690482-73690501 None:intergenic 40.0%
! TGGAGCGTCTAATACAATAG+TGG + chr3_1:73690483-73690502 None:intergenic 40.0%
CTTTCTTTCTTGCTTGGAAC+AGG - chr3_1:73690666-73690685 Msa0374290:intron 40.0%
! TGTGAAGAATGTTTCTGCTG+GGG - chr3_1:73690786-73690805 Msa0374290:intron 40.0%
GTGGTTCATACTTTGCCATT+TGG - chr3_1:73690936-73690955 Msa0374290:intron 40.0%
! GGTTCATACTTTGCCATTTG+GGG - chr3_1:73690938-73690957 Msa0374290:intron 40.0%
! GTTCATACTTTGCCATTTGG+GGG - chr3_1:73690939-73690958 Msa0374290:intron 40.0%
AAAAAGGCAGTTCTTTACCG+TGG - chr3_1:73691023-73691042 Msa0374290:CDS 40.0%
!! GTTCTTTACCGTGGTTTTAC+GGG - chr3_1:73691032-73691051 Msa0374290:CDS 40.0%
TGCTTTGTATCAGTGTAAGG+CGG + chr3_1:73691077-73691096 None:intergenic 40.0%
! TTGTTCGTGCTCTTTTTGGA+TGG - chr3_1:73691138-73691157 Msa0374290:CDS 40.0%
AGATCAGTCACAGAAGAAGG+TGG - chr3_1:73687086-73687105 Msa0374290:three_prime_UTR 45.0%
CAGAAGAAGGTGGTGTTTGA+CGG - chr3_1:73687096-73687115 Msa0374290:three_prime_UTR 45.0%
CAGAATTAAAGCTCACCCTC+AGG + chr3_1:73687149-73687168 None:intergenic 45.0%
! CTGAGGGTGAGCTTTAATTC+TGG - chr3_1:73687147-73687166 Msa0374290:CDS 45.0%
TTTCAAGCGGTGGTTTAGCA+AGG + chr3_1:73687272-73687291 None:intergenic 45.0%
TAGACAACAGTTTCAAGCGG+TGG + chr3_1:73687282-73687301 None:intergenic 45.0%
GCTTGAAACTGTTGTCTACG+AGG - chr3_1:73687284-73687303 Msa0374290:CDS 45.0%
TGCGTATTAGTGTGAGACTG+TGG - chr3_1:73688138-73688157 Msa0374290:intron 45.0%
AGTTACTCGCGAAATTCGCA+TGG - chr3_1:73688188-73688207 Msa0374290:CDS 45.0%
CCCAATTTCTTCAGCTGAGA+AGG - chr3_1:73688656-73688675 Msa0374290:CDS 45.0%
AACACTACACCAAGTGGTTC+AGG + chr3_1:73688805-73688824 None:intergenic 45.0%
AGCTCCAACAACTGGATCAA+GGG + chr3_1:73689231-73689250 None:intergenic 45.0%
TAGCTCCAACAACTGGATCA+AGG + chr3_1:73689232-73689251 None:intergenic 45.0%
!!! TTTTAGAACCACGGCGTTTC+CGG + chr3_1:73689261-73689280 None:intergenic 45.0%
TCACTGCTGGCGAACTTATT+AGG - chr3_1:73689308-73689327 Msa0374290:intron 45.0%
CACTGCTGGCGAACTTATTA+GGG - chr3_1:73689309-73689328 Msa0374290:intron 45.0%
!! CAGGTAATGGAAAAGTGGGA+CGG - chr3_1:73689608-73689627 Msa0374290:intron 45.0%
AAAAGTGGGACGGATAGTGA+TGG - chr3_1:73689618-73689637 Msa0374290:intron 45.0%
!! GGAAAGTGGTGCTGTAACAA+TGG - chr3_1:73690058-73690077 Msa0374290:intron 45.0%
!! CTGTCTTTAAGGCATCAACC+TGG + chr3_1:73690217-73690236 None:intergenic 45.0%
TTCTAACCACTTTGCTCGCT+TGG - chr3_1:73690298-73690317 Msa0374290:intron 45.0%
TCTTTACCAAGCGAGCAAAG+TGG + chr3_1:73690307-73690326 None:intergenic 45.0%
TGCTCGCTTGGTAAAGATGT+TGG - chr3_1:73690310-73690329 Msa0374290:intron 45.0%
AAAGATGTTGGACGACGAGA+AGG - chr3_1:73690322-73690341 Msa0374290:intron 45.0%
TCTGGCAAGGTTGTTTATGG+AGG - chr3_1:73690347-73690366 Msa0374290:intron 45.0%
TCCATTGCTTCCCATCATCA+CGG - chr3_1:73690538-73690557 Msa0374290:intron 45.0%
! AGCTTCGATTTGATCAACGC+AGG - chr3_1:73690706-73690725 Msa0374290:intron 45.0%
! GTGAAGAATGTTTCTGCTGG+GGG - chr3_1:73690787-73690806 Msa0374290:intron 45.0%
TATGAACCACAAGCTGCACA+AGG + chr3_1:73690926-73690945 None:intergenic 45.0%
CGTCAAAGGAGAATTTCCCA+TGG + chr3_1:73690992-73691011 None:intergenic 45.0%
ATGCATCACCCGTAAAACCA+CGG + chr3_1:73691043-73691062 None:intergenic 45.0%
! TTACGGGTGATGCATCGATA+AGG - chr3_1:73691048-73691067 Msa0374290:CDS 45.0%
GCTTTGTATCAGTGTAAGGC+GGG + chr3_1:73691076-73691095 None:intergenic 45.0%
AACAACACCAGTAACATCGC+CGG + chr3_1:73691123-73691142 None:intergenic 45.0%
!!! GGTGTTGTTCGTGCTCTTTT+TGG - chr3_1:73691134-73691153 Msa0374290:CDS 45.0%
!!! AATTATAATTCATTTTTTTT+TGG - chr3_1:73687368-73687387 Msa0374290:intron 5.0%
! AGGAAAGAGGTTGGACTAGG+CGG + chr3_1:73688253-73688272 None:intergenic 50.0%
CTCATGTGAAGTCACGCTGA+AGG - chr3_1:73688593-73688612 Msa0374290:CDS 50.0%
ACAATGGATGGCCCCAGAAA+AGG - chr3_1:73688623-73688642 Msa0374290:CDS 50.0%
CTGTCCCTTGATCCAGTTGT+TGG - chr3_1:73689224-73689243 Msa0374290:intron 50.0%
GCTGCTATAGCTCCAACAAC+TGG + chr3_1:73689239-73689258 None:intergenic 50.0%
GTTGTTGGAGCTATAGCAGC+CGG - chr3_1:73689239-73689258 Msa0374290:intron 50.0%
GAGGCTGGAGCAATTTCTGA+TGG + chr3_1:73689284-73689303 None:intergenic 50.0%
TGCTGGCGAACTTATTAGGG+AGG - chr3_1:73689312-73689331 Msa0374290:intron 50.0%
ACACCTTACACCAGTCGTTC+TGG - chr3_1:73689654-73689673 Msa0374290:intron 50.0%
TGGCTATCCAGGAGAACTGA+AGG + chr3_1:73689784-73689803 None:intergenic 50.0%
!! GTTTGGTGCCTCTCATTTCC+AGG - chr3_1:73690196-73690215 Msa0374290:intron 50.0%
GGCATCAACCTGGAAATGAG+AGG + chr3_1:73690207-73690226 None:intergenic 50.0%
TTGGACGACGAGAAGGTTTC+TGG - chr3_1:73690329-73690348 Msa0374290:intron 50.0%
!! ACCGTGATGATGGGAAGCAA+TGG + chr3_1:73690542-73690561 None:intergenic 50.0%
CTTGGAACAGGTGAACAAGC+TGG - chr3_1:73690678-73690697 Msa0374290:intron 50.0%
CCACAAGCTGCACAAGGAAA+AGG + chr3_1:73690920-73690939 None:intergenic 50.0%
! CCTTTTCCTTGTGCAGCTTG+TGG - chr3_1:73690917-73690936 Msa0374290:intron 50.0%
! ACTTTGCCATTTGGGGGAGT+TGG - chr3_1:73690945-73690964 Msa0374290:intron 50.0%
!! GGAGTTGGTGACAGTGGAAT+GGG - chr3_1:73690960-73690979 Msa0374290:intron 50.0%
AGTGGAATGGGTGCATACCA+TGG - chr3_1:73690972-73690991 Msa0374290:intron 50.0%
GTGGAATGGGTGCATACCAT+GGG - chr3_1:73690973-73690992 Msa0374290:intron 50.0%
! TTGATGAAGGCTCTAGTCGC+CGG - chr3_1:73691101-73691120 Msa0374290:CDS 50.0%
ACAAATGGTACGGCACTAGC+AGG + chr3_1:73691200-73691219 None:intergenic 50.0%
GGTGGTGTTTGACGGAGAAG+CGG - chr3_1:73687104-73687123 Msa0374290:three_prime_UTR 55.0%
! GTCGTTGGTGAAGGACCTGA+GGG - chr3_1:73687131-73687150 Msa0374290:exon 55.0%
AGTGGGACGGATAGTGATGG+CGG - chr3_1:73689621-73689640 Msa0374290:intron 55.0%
GCTCCAGAACGACTGGTGTA+AGG + chr3_1:73689660-73689679 None:intergenic 55.0%
!! ACACCAGTCGTTCTGGAGCT+TGG - chr3_1:73689661-73689680 Msa0374290:CDS 55.0%
!! CGACGAGAAGGTTTCTGGCA+AGG - chr3_1:73690334-73690353 Msa0374290:intron 55.0%
CTGTCACCAACTCCCCCAAA+TGG + chr3_1:73690954-73690973 None:intergenic 55.0%
!! TTTGGGGGAGTTGGTGACAG+TGG - chr3_1:73690954-73690973 Msa0374290:intron 55.0%
!! GGGAGTTGGTGACAGTGGAA+TGG - chr3_1:73690959-73690978 Msa0374290:intron 55.0%
GGTACGGCACTAGCAGGTAT+CGG + chr3_1:73691194-73691213 None:intergenic 55.0%
! CGTCGTTGGTGAAGGACCTG+AGG - chr3_1:73687130-73687149 Msa0374290:exon 60.0%
TATAGCAGCCGGAAACGCCG+TGG - chr3_1:73689250-73689269 Msa0374290:intron 60.0%
TCCAGCCTCGTCTTCACTGC+TGG - chr3_1:73689295-73689314 Msa0374290:intron 60.0%
GTTCGCCAGCAGTGAAGACG+AGG + chr3_1:73689303-73689322 None:intergenic 60.0%
CCTCCAAGCTCCAGAACGAC+TGG + chr3_1:73689667-73689686 None:intergenic 60.0%
!! CCAGTCGTTCTGGAGCTTGG+AGG - chr3_1:73689664-73689683 Msa0374290:CDS 60.0%
CTAGTCGCCGGCGATGTTAC+TGG - chr3_1:73691113-73691132 Msa0374290:CDS 60.0%
! AGCGGCGTCGTCGTTGGTGA+AGG - chr3_1:73687122-73687141 Msa0374290:exon 65.0%
GCCAGCAGTGAAGACGAGGC+TGG + chr3_1:73689299-73689318 None:intergenic 65.0%
CGGAGAAGCGGCGTCGTCGT+TGG - chr3_1:73687116-73687135 Msa0374290:exon 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73686949 73691350 73686949 ID=Msa0374290;Name=Msa0374290
chr3_1 mRNA 73686949 73691350 73686949 ID=Msa0374290-mRNA-1;Parent=Msa0374290;Name=Msa0374290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|10|184|490
chr3_1 exon 73686949 73687366 73686949 ID=Msa0374290-mRNA-1:exon:16828;Parent=Msa0374290-mRNA-1
chr3_1 exon 73687462 73687611 73687462 ID=Msa0374290-mRNA-1:exon:16827;Parent=Msa0374290-mRNA-1
chr3_1 exon 73687740 73687830 73687740 ID=Msa0374290-mRNA-1:exon:16826;Parent=Msa0374290-mRNA-1
chr3_1 exon 73687909 73688081 73687909 ID=Msa0374290-mRNA-1:exon:16825;Parent=Msa0374290-mRNA-1
chr3_1 exon 73688161 73688265 73688161 ID=Msa0374290-mRNA-1:exon:16824;Parent=Msa0374290-mRNA-1
chr3_1 exon 73688573 73688688 73688573 ID=Msa0374290-mRNA-1:exon:16823;Parent=Msa0374290-mRNA-1
chr3_1 exon 73688871 73689077 73688871 ID=Msa0374290-mRNA-1:exon:16822;Parent=Msa0374290-mRNA-1
chr3_1 exon 73689446 73689542 73689446 ID=Msa0374290-mRNA-1:exon:16821;Parent=Msa0374290-mRNA-1
chr3_1 exon 73689655 73689723 73689655 ID=Msa0374290-mRNA-1:exon:16820;Parent=Msa0374290-mRNA-1
chr3_1 exon 73690994 73691350 73690994 ID=Msa0374290-mRNA-1:exon:16819;Parent=Msa0374290-mRNA-1
chr3_1 five_prime_UTR 73691225 73691350 73691225 ID=Msa0374290-mRNA-1:five_prime_utr;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73690994 73691224 73690994 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73689655 73689723 73689655 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73689446 73689542 73689446 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73688871 73689077 73688871 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73688573 73688688 73688573 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73688161 73688265 73688161 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73687909 73688081 73687909 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73687740 73687830 73687740 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73687462 73687611 73687462 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 CDS 73687133 73687366 73687133 ID=Msa0374290-mRNA-1:cds;Parent=Msa0374290-mRNA-1
chr3_1 three_prime_UTR 73686949 73687132 73686949 ID=Msa0374290-mRNA-1:three_prime_utr;Parent=Msa0374290-mRNA-1
Gene Sequence

>Msa0374290

ATGTCGGGTGAAGATCAGTCACAGAAGAAGGTGGTGTTTGACGGAGAAGCGGCGTCGTCGTTGGTGAAGGACCTGAGGGTGAGCTTTAATTCTGGTAAGACACGAAGTTATGAATGGAGAGTATCGCAGGTGAAAGCTCTTTTGAAGATGGTTGATGAACAACAGGATCAAATCATTGATGCTCTTCGTTCTGACCTTGCTAAACCACCGCTTGAAACTGTTGTCTACGAGATTGGTATGTTTAAAAACTCATGTGAAGTCACGCTGAAGGAATTGAAACAATGGATGGCCCCAGAAAAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTAGTGTTAGTCATCTCTGCTTGGAACTATCCATTTTTGCTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCCGGAAACGCCGTGGTTCTAAAACCATCAGAAATTGCTCCAGCCTCGTCTTCACTGCTGGCGAACTTATTAGGGAGGTACATGGATAACTCATCTATAAGAGTTGTGGAGGGGGCCGTTGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTGTATACAGGTAATGGAAAAGTGGGACGGATAGTGATGGCGGCTGCTGCAAAACACCTTACACCAGTCGTTCTGGAGCTTGGAGGAAAATCTCCAACTGTTGTGGATTCAAATGTCAATTTAGAGGTTACAGCTAGACGGATAATTTCAGGAAAGTGGTGCTGTAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCCCCCAAATTGGTTGATGCCTTAAAGACAGAATTGGAAAGCTTCTTTGGAAAGAATCCAATAGAATCCAATGATTTATCGCGCATTGTGAGTTCTAACCACTTTGCTCGCTTGGTAAAGATGTTGGACGACGAGAAGGTTTCTGGCAAGGTTGTTTATGGAGGTGAAAAGGATGAAAACAAACTGAGGATTGCTCCCACTATTGTATTAGACGCTCCACAAGATTCTCTGATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTGAACAAGCTGGAAGAAAGCTTCGATTTGATCAACGCAGGAACAAAGCCACTTGCTGCATATTTATTTACAAATGACAACAAGTTCAAGGAGCAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATCAATGACACTGTCTTACATCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGTGACAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGACGCTTTTACTCACAAAAAGGCAGTTCTTTACCGTGGTTTTACGGGTGATGCATCGATAAGGTACCCGCCTTACACTGATACAAAGCAGAAATTGATGAAGGCTCTAGTCGCCGGCGATGTTACTGGTGTTGTTCGTGCTCTTTTTGGATGGTCCTAA

Protein sequence

>Msa0374290

MSGEDQSQKKVVFDGEAASSLVKDLRVSFNSGKTRSYEWRVSQVKALLKMVDEQQDQIIDALRSDLAKPPLETVVYEIGMFKNSCEVTLKELKQWMAPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSSLLANLLGRYMDNSSIRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVVLELGGKSPTVVDSNVNLEVTARRIISGKWCCNNGQACISPDYVITTKDFAPKLVDALKTELESFFGKNPIESNDLSRIVSSNHFARLVKMLDDEKVSGKVVYGGEKDENKLRIAPTIVLDAPQDSLIMSEEIFGPLLPIITVNKLEESFDLINAGTKPLAAYLFTNDNKFKEQFVKNVSAGGLLINDTVLHLVVHTLPFGGVGDSGMGAYHGKFSFDAFTHKKAVLYRGFTGDASIRYPPYTDTKQKLMKALVAGDVTGVVRALFGWS*