Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475090 | XP_003602802.1 | 98.404 | 564 | 9 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1127 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475090 | sp|F4I9E1|NFD4_ARATH | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 5.91e-32 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475090 | G7J3V8 | 98.404 | 564 | 9 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1127 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364780 | Msa0475090 | 0.804999 | 1.649692e-49 | -8.615850e-47 |
| Msa0379100 | Msa0475090 | 0.895413 | 9.812984e-76 | -8.615850e-47 |
| Msa0428730 | Msa0475090 | 0.916497 | 1.658349e-85 | -8.615850e-47 |
| Msa0456760 | Msa0475090 | 0.802616 | 5.154421e-49 | -8.615850e-47 |
| Msa0475090 | Msa0504090 | 0.804136 | 2.497130e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475090 | MtrunA17_Chr3g0132161 | 98.404 | 564 | 9 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1127 |
| Msa0475090 | MtrunA17_Chr7g0225191 | 50.420 | 595 | 246 | 7 | 1 | 559 | 1 | 582 | 0.0 | 552 |
| Msa0475090 | MtrunA17_Chr1g0210274 | 35.409 | 562 | 321 | 10 | 10 | 554 | 21 | 557 | 1.37e-102 | 322 |
| Msa0475090 | MtrunA17_Chr2g0304561 | 33.216 | 566 | 340 | 6 | 16 | 561 | 13 | 560 | 2.20e-100 | 315 |
| Msa0475090 | MtrunA17_Chr1g0210284 | 34.220 | 564 | 325 | 10 | 10 | 554 | 21 | 557 | 2.83e-100 | 315 |
| Msa0475090 | MtrunA17_Chr5g0405621 | 35.305 | 558 | 313 | 11 | 9 | 557 | 7 | 525 | 3.13e-97 | 306 |
| Msa0475090 | MtrunA17_Chr1g0210291 | 34.296 | 554 | 327 | 10 | 15 | 554 | 25 | 555 | 3.42e-97 | 307 |
| Msa0475090 | MtrunA17_Chr4g0064981 | 32.474 | 582 | 348 | 7 | 7 | 561 | 3 | 566 | 7.77e-96 | 303 |
| Msa0475090 | MtrunA17_Chr7g0264861 | 34.955 | 555 | 332 | 8 | 15 | 554 | 29 | 569 | 1.24e-94 | 301 |
| Msa0475090 | MtrunA17_Chr4g0037301 | 34.426 | 549 | 328 | 7 | 15 | 557 | 15 | 537 | 1.27e-94 | 300 |
| Msa0475090 | MtrunA17_Chr1g0171591 | 33.871 | 558 | 334 | 9 | 15 | 554 | 24 | 564 | 1.36e-91 | 293 |
| Msa0475090 | MtrunA17_Chr1g0174101 | 32.337 | 569 | 341 | 10 | 6 | 554 | 11 | 555 | 1.73e-86 | 279 |
| Msa0475090 | MtrunA17_Chr2g0330551 | 31.810 | 569 | 323 | 11 | 10 | 554 | 2 | 529 | 5.57e-81 | 263 |
| Msa0475090 | MtrunA17_Chr5g0442481 | 32.007 | 553 | 328 | 10 | 15 | 556 | 11 | 526 | 1.43e-73 | 244 |
| Msa0475090 | MtrunA17_Chr7g0251871 | 25.350 | 572 | 370 | 11 | 13 | 553 | 5 | 550 | 3.26e-38 | 148 |
| Msa0475090 | MtrunA17_Chr2g0333371 | 25.937 | 347 | 187 | 5 | 231 | 561 | 4 | 296 | 6.74e-34 | 130 |
| Msa0475090 | MtrunA17_Chr5g0408921 | 24.269 | 581 | 371 | 15 | 14 | 553 | 6 | 558 | 1.79e-29 | 122 |
| Msa0475090 | MtrunA17_Chr3g0106801 | 23.766 | 547 | 370 | 10 | 15 | 554 | 7 | 513 | 3.75e-28 | 118 |
| Msa0475090 | MtrunA17_Chr3g0106821 | 22.493 | 369 | 275 | 4 | 15 | 381 | 7 | 366 | 1.97e-22 | 99.4 |
| Msa0475090 | MtrunA17_Chr8g0369621 | 28.144 | 167 | 118 | 2 | 14 | 180 | 47 | 211 | 2.50e-15 | 79.3 |
| Msa0475090 | MtrunA17_Chr8g0369621 | 26.482 | 253 | 155 | 7 | 311 | 556 | 374 | 602 | 7.91e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475090 | AT5G50630.1 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| Msa0475090 | AT5G50520.1 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| Msa0475090 | AT3G01930.2 | 50.166 | 604 | 234 | 8 | 3 | 562 | 4 | 584 | 0.0 | 545 |
| Msa0475090 | AT5G14120.1 | 48.074 | 597 | 252 | 6 | 3 | 562 | 4 | 579 | 0.0 | 531 |
| Msa0475090 | AT3G01930.1 | 47.571 | 494 | 192 | 8 | 113 | 562 | 1 | 471 | 3.70e-135 | 402 |
| Msa0475090 | AT3G01930.3 | 51.481 | 439 | 163 | 6 | 3 | 398 | 4 | 435 | 7.39e-135 | 399 |
| Msa0475090 | AT2G39210.1 | 36.444 | 568 | 308 | 11 | 15 | 557 | 21 | 560 | 3.88e-106 | 331 |
| Msa0475090 | AT2G28120.1 | 34.775 | 555 | 331 | 9 | 11 | 554 | 13 | 547 | 6.90e-99 | 311 |
| Msa0475090 | AT4G34950.1 | 33.276 | 577 | 323 | 12 | 15 | 562 | 16 | 559 | 4.44e-97 | 306 |
| Msa0475090 | AT1G80530.1 | 32.124 | 579 | 339 | 7 | 7 | 561 | 3 | 551 | 3.18e-91 | 291 |
| Msa0475090 | AT2G16660.1 | 33.451 | 568 | 325 | 10 | 5 | 557 | 4 | 533 | 1.55e-89 | 286 |
| Msa0475090 | AT1G74780.1 | 32.212 | 565 | 314 | 12 | 15 | 556 | 7 | 525 | 1.80e-79 | 259 |
| Msa0475090 | AT2G34350.1 | 30.511 | 567 | 324 | 9 | 10 | 556 | 2 | 518 | 5.87e-79 | 258 |
| Msa0475090 | AT2G34350.2 | 30.511 | 567 | 324 | 9 | 10 | 556 | 2 | 518 | 5.87e-79 | 258 |
| Msa0475090 | AT1G18940.1 | 30.961 | 562 | 318 | 12 | 15 | 557 | 9 | 519 | 1.20e-73 | 244 |
| Msa0475090 | AT2G34355.1 | 29.381 | 565 | 327 | 12 | 12 | 556 | 4 | 516 | 1.07e-71 | 239 |
| Msa0475090 | AT2G16660.2 | 34.491 | 403 | 235 | 7 | 4 | 392 | 3 | 390 | 1.30e-64 | 216 |
| Msa0475090 | AT2G34355.2 | 29.017 | 417 | 232 | 11 | 152 | 556 | 2 | 366 | 1.19e-41 | 154 |
| Msa0475090 | AT4G19450.1 | 27.367 | 581 | 356 | 17 | 14 | 555 | 6 | 559 | 6.17e-41 | 156 |
| Msa0475090 | AT5G45275.1 | 24.958 | 589 | 358 | 14 | 14 | 555 | 6 | 557 | 2.52e-35 | 140 |
| Msa0475090 | AT4G19450.2 | 27.475 | 404 | 252 | 12 | 14 | 381 | 6 | 404 | 1.71e-33 | 132 |
| Msa0475090 | AT1G31470.1 | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 6.01e-33 | 133 |
| Msa0475090 | AT3G01630.1 | 24.645 | 564 | 371 | 14 | 14 | 559 | 22 | 549 | 8.87e-33 | 132 |
| Msa0475090 | AT3G01630.2 | 24.645 | 564 | 371 | 14 | 14 | 559 | 40 | 567 | 1.05e-32 | 132 |
| Msa0475090 | AT2G30300.1 | 24.390 | 574 | 317 | 14 | 16 | 555 | 8 | 498 | 4.15e-26 | 112 |
Find 153 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCCTTCTTTGCCTTTA+TGG | 0.127424 | 3_3:+78157554 | Msa0475090:CDS |
| CTTAAGTGTGGCTAAGGATT+TGG | 0.185948 | 3_3:+78157408 | Msa0475090:CDS |
| GCAGCAACTTCAGAAGTATT+TGG | 0.198073 | 3_3:+78159452 | Msa0475090:CDS |
| GTTGGATCTCTGCTTGTATC+TGG | 0.224970 | 3_3:+78159524 | Msa0475090:CDS |
| AAGCAACTCGTTATTATTTC+CGG | 0.233736 | 3_3:-78159648 | None:intergenic |
| ATGCACAGAATACAAATTTA+TGG | 0.236670 | 3_3:+78159590 | Msa0475090:CDS |
| ATGTTTGTTTCTATCGTCTT+AGG | 0.238459 | 3_3:+78158795 | Msa0475090:CDS |
| ACCAACACGGCCTAGGAAAT+TGG | 0.240141 | 3_3:-78158916 | None:intergenic |
| TTATGGAGCCTCCGCGAAAT+TGG | 0.241473 | 3_3:+78159607 | Msa0475090:CDS |
| GGGTCAGATTTGTCAATCTT+TGG | 0.262023 | 3_3:+78158851 | Msa0475090:CDS |
| CTTCAGAATGTTGTTGGTTA+TGG | 0.262768 | 3_3:+78157505 | Msa0475090:CDS |
| TTGGCTTAAGCGGCGCAATT+TGG | 0.265189 | 3_3:+78158253 | Msa0475090:CDS |
| TTCATCTTGGTGGGACAAAA+TGG | 0.273357 | 3_3:+78158138 | Msa0475090:CDS |
| AATTATAGTTCCTATTATAT+TGG | 0.276451 | 3_3:+78158563 | Msa0475090:CDS |
| CTCTTAGCTGCCTATTTAAT+GGG | 0.282295 | 3_3:+78158453 | Msa0475090:CDS |
| AAGTCTCTATCTTGAGTTTA+GGG | 0.284035 | 3_3:+78159803 | Msa0475090:exon |
| TTATTTCCGGTACCATAATA+AGG | 0.284663 | 3_3:-78159635 | None:intergenic |
| AATATAATAGGAACTATAAT+TGG | 0.296483 | 3_3:-78158561 | None:intergenic |
| CAACAAAACTCCCATTAAAT+AGG | 0.301844 | 3_3:-78158463 | None:intergenic |
| TCAGCAAAGCTTGGCCTGTT+TGG | 0.301872 | 3_3:+78157461 | Msa0475090:CDS |
| AAATTGGAAATGCCTTATTA+TGG | 0.306116 | 3_3:+78159623 | Msa0475090:CDS |
| TCTCTTAGCTGCCTATTTAA+TGG | 0.306613 | 3_3:+78158452 | Msa0475090:CDS |
| GAGAAGAAAACCAATATAAT+AGG | 0.316323 | 3_3:-78158573 | None:intergenic |
| ATAGCAATAACCATGGGTTT+TGG | 0.320887 | 3_3:+78159401 | Msa0475090:CDS |
| AAAATTAAATTTGCAATTGT+TGG | 0.324117 | 3_3:+78159835 | Msa0475090:three_prime_UTR |
| TTAAGTGTGGCTAAGGATTT+GGG | 0.328079 | 3_3:+78157409 | Msa0475090:CDS |
| CAGCAAAGCTTGGCCTGTTT+GGG | 0.333110 | 3_3:+78157462 | Msa0475090:CDS |
| ATTCCCAACTTTATGGTAAT+GGG | 0.335479 | 3_3:+78159780 | Msa0475090:CDS |
| GCTAGAGAATATGTTTGATT+TGG | 0.340300 | 3_3:+78158485 | Msa0475090:CDS |
| TATTCCCAACTTTATGGTAA+TGG | 0.342343 | 3_3:+78159779 | Msa0475090:CDS |
| AAATTAAATTTGCAATTGTT+GGG | 0.345446 | 3_3:+78159836 | Msa0475090:three_prime_UTR |
| CAGCAACTTCAGAAGTATTT+GGG | 0.346552 | 3_3:+78159453 | Msa0475090:CDS |
| GAAGTCTCTATCTTGAGTTT+AGG | 0.351073 | 3_3:+78159802 | Msa0475090:exon |
| ATCTTCAAAAGTAACATGTT+TGG | 0.359540 | 3_3:-78158691 | None:intergenic |
| GGTCAGATTTGTCAATCTTT+GGG | 0.365348 | 3_3:+78158852 | Msa0475090:CDS |
| GTTTGGGCAGTTATACTTGT+TGG | 0.387389 | 3_3:+78157478 | Msa0475090:CDS |
| GTTTCTATCGTCTTAGGTTG+TGG | 0.394738 | 3_3:+78158801 | Msa0475090:CDS |
| AAAATCAAAGAGGCTTGATC+AGG | 0.403361 | 3_3:-78158303 | None:intergenic |
| TATTTGGGTTAAAGAACTTT+GGG | 0.404022 | 3_3:+78159468 | Msa0475090:CDS |
| GCAGGAACAGCTTACATGTT+TGG | 0.404543 | 3_3:+78157328 | Msa0475090:CDS |
| ATCGTCTTAGGTTGTGGATC+AGG | 0.406553 | 3_3:+78158807 | Msa0475090:CDS |
| GTAGTTTGCTTGGTTGCAGC+TGG | 0.409953 | 3_3:+78159719 | Msa0475090:CDS |
| TCTAGACCCTCTGATGAATC+AGG | 0.413206 | 3_3:+78158402 | Msa0475090:CDS |
| CACATACATACCGTCCATAA+AGG | 0.413324 | 3_3:-78157568 | None:intergenic |
| ATTTACCATTGCTTGTGTTA+AGG | 0.413356 | 3_3:-78158757 | None:intergenic |
| TTGTTGGTTATGGTCTTGTT+TGG | 0.418799 | 3_3:+78157515 | Msa0475090:CDS |
| TACTATACCATAGGTTTGGT+TGG | 0.429856 | 3_3:+78159365 | Msa0475090:CDS |
| GACAACGTTGGACTTCTAGC+TGG | 0.436727 | 3_3:+78157433 | Msa0475090:CDS |
| AGCTTTCTTAAGTGTGGCTA+AGG | 0.438962 | 3_3:+78157402 | Msa0475090:CDS |
| GTATTTGGGTTAAAGAACTT+TGG | 0.439987 | 3_3:+78159467 | Msa0475090:CDS |
| AAAGTAAAAGAAACCATTGC+TGG | 0.440366 | 3_3:-78158342 | None:intergenic |
| GGTGTTTGTGTGTGCAATGT+GGG | 0.443279 | 3_3:+78157294 | Msa0475090:CDS |
| CTCCTACTATACCATAGGTT+TGG | 0.445658 | 3_3:+78159361 | Msa0475090:CDS |
| ACTTCCCATTACCATAAAGT+TGG | 0.446345 | 3_3:-78159784 | None:intergenic |
| TCCTTCTTTGCCTTTATGGA+CGG | 0.447825 | 3_3:+78157558 | Msa0475090:CDS |
| ATTGCCAACGCCACAAGTCT+CGG | 0.458481 | 3_3:-78159311 | None:intergenic |
| AGAAAAGTTGAAGAAATTTG+TGG | 0.464182 | 3_3:+78157258 | Msa0475090:CDS |
| CTTCCCATTACCATAAAGTT+GGG | 0.464254 | 3_3:-78159783 | None:intergenic |
| GGTGTCCTTCAGAATGTTGT+TGG | 0.468337 | 3_3:+78157499 | Msa0475090:CDS |
| ATGTGGGATATGTCATTTGC+AGG | 0.471152 | 3_3:+78157310 | Msa0475090:CDS |
| ATATCCCTACCACGGGGCCT+CGG | 0.474408 | 3_3:-78158218 | None:intergenic |
| ATCTCTGCTTGTATCTGGAT+TGG | 0.476420 | 3_3:+78159529 | Msa0475090:CDS |
| GAAATGCCTTATTATGGTAC+CGG | 0.477877 | 3_3:+78159629 | Msa0475090:CDS |
| CTTACAATTGCTAGCCCAGT+TGG | 0.478016 | 3_3:+78159506 | Msa0475090:CDS |
| CAATGTTAACATTTATGTAT+CGG | 0.479065 | 3_3:+78158881 | Msa0475090:CDS |
| TTCCTAGGCCGTGTTGGTGG+CGG | 0.479191 | 3_3:+78158921 | Msa0475090:CDS |
| ACAAGTATAACTGCCCAAAC+AGG | 0.483574 | 3_3:-78157475 | None:intergenic |
| ATTTGTTATTCCTTGACTTG+TGG | 0.484082 | 3_3:+78159686 | Msa0475090:CDS |
| GAAAACCGAGGCCCCGTGGT+AGG | 0.484749 | 3_3:+78158213 | Msa0475090:CDS |
| GAAAAGTTGAAGAAATTTGT+GGG | 0.485863 | 3_3:+78157259 | Msa0475090:CDS |
| GATTGATTAAAAGTATGAAC+AGG | 0.486679 | 3_3:-78158381 | None:intergenic |
| AACGAGTTGCTTCTTTGCAA+AGG | 0.490959 | 3_3:+78159659 | Msa0475090:CDS |
| AAAGGATTCGTTGGCTTAAG+CGG | 0.491176 | 3_3:+78158243 | Msa0475090:CDS |
| AAATAATACTCAAACCTTGT+GGG | 0.494390 | 3_3:-78159878 | None:intergenic |
| TCATTGTTCAAAGGACTAAG+AGG | 0.496212 | 3_3:+78159753 | Msa0475090:CDS |
| ATCCCATTGGTCAATTGCAT+TGG | 0.496703 | 3_3:+78159430 | Msa0475090:CDS |
| ATAAGATAAGCAGCCTAGCT+AGG | 0.501618 | 3_3:+78157202 | Msa0475090:five_prime_UTR |
| TATCAATAAGCTACCTAGCT+AGG | 0.502972 | 3_3:-78157215 | None:intergenic |
| TGCCAATGCAATTGACCAAT+GGG | 0.507214 | 3_3:-78159432 | None:intergenic |
| TGCAAAATGTTTCACCCACA+AGG | 0.507402 | 3_3:+78159864 | Msa0475090:three_prime_UTR |
| ATTCAAGCAGTGATGTCCTT+GGG | 0.509232 | 3_3:+78159335 | Msa0475090:CDS |
| TCCAATTTCCTAGGCCGTGT+TGG | 0.509421 | 3_3:+78158915 | Msa0475090:CDS |
| GATACAAGCAGAGATCCAAC+TGG | 0.510888 | 3_3:-78159521 | None:intergenic |
| GATTCAAGCAGTGATGTCCT+TGG | 0.514626 | 3_3:+78159334 | Msa0475090:CDS |
| GGGATATTGAAAGGATTCGT+TGG | 0.515288 | 3_3:+78158234 | Msa0475090:CDS |
| ATACTACAACACAGCAGCAT+TGG | 0.515438 | 3_3:+78158167 | Msa0475090:CDS |
| ACCGTCCATAAAGGCAAAGA+AGG | 0.516260 | 3_3:-78157559 | None:intergenic |
| ACAACGTTGGACTTCTAGCT+GGG | 0.518106 | 3_3:+78157434 | Msa0475090:CDS |
| AACTTGTCCAACCAAACCTA+TGG | 0.519795 | 3_3:-78159372 | None:intergenic |
| TGAGTTTGATCATTGTTCAA+AGG | 0.522810 | 3_3:+78159744 | Msa0475090:CDS |
| TTAAATTTGCAATTGTTGGG+GGG | 0.524544 | 3_3:+78159839 | Msa0475090:three_prime_UTR |
| CTGGGTTTATCAGCAAAGCT+TGG | 0.525007 | 3_3:+78157452 | Msa0475090:CDS |
| TTGCCAACGCCACAAGTCTC+GGG | 0.527950 | 3_3:-78159310 | None:intergenic |
| ATCAGCATATCCAATTTCCT+AGG | 0.530608 | 3_3:+78158906 | Msa0475090:CDS |
| AATTAAATTTGCAATTGTTG+GGG | 0.531399 | 3_3:+78159837 | Msa0475090:three_prime_UTR |
| AGGTGTAGTTGCTGCAACAA+TGG | 0.531721 | 3_3:-78158637 | None:intergenic |
| TGCTAAAATTCCACAAGTCA+AGG | 0.533451 | 3_3:-78159696 | None:intergenic |
| ATTAAATTTGCAATTGTTGG+GGG | 0.534350 | 3_3:+78159838 | Msa0475090:three_prime_UTR |
| ATAAGGCATTTCCAATTTCG+CGG | 0.536667 | 3_3:-78159618 | None:intergenic |
| AACCAAACCTATGGTATAGT+AGG | 0.541846 | 3_3:-78159363 | None:intergenic |
| TCATGAGTACATTTACATGT+TGG | 0.542028 | 3_3:-78157115 | None:intergenic |
| CCTTTCAATATCCCTACCAC+GGG | 0.542176 | 3_3:-78158225 | None:intergenic |
| CCCATGCTGCTCTTTATGAC+TGG | 0.544672 | 3_3:-78157361 | None:intergenic |
| CAAATAATACTCAAACCTTG+TGG | 0.548459 | 3_3:-78159879 | None:intergenic |
| GGACTCTCCTACTATACCAT+AGG | 0.548639 | 3_3:+78159356 | Msa0475090:CDS |
| TGGTGTTTGTGTGTGCAATG+TGG | 0.552532 | 3_3:+78157293 | Msa0475090:CDS |
| AATTTCCTAGGCCGTGTTGG+TGG | 0.553242 | 3_3:+78158918 | Msa0475090:CDS |
| AGAAATTTGTGGGACACAGA+TGG | 0.556960 | 3_3:+78157269 | Msa0475090:CDS |
| AAAACCGAGGCCCCGTGGTA+GGG | 0.558213 | 3_3:+78158214 | Msa0475090:CDS |
| GTAAAATCCTCTCCTCTATG+TGG | 0.564577 | 3_3:-78158735 | None:intergenic |
| TAAATTTGCAATTGTTGGGG+GGG | 0.568431 | 3_3:+78159840 | Msa0475090:three_prime_UTR |
| CCAGTCATAAAGAGCAGCAT+GGG | 0.570468 | 3_3:+78157361 | Msa0475090:CDS |
| CATAGCAGTTGGTCCAGCAA+TGG | 0.571113 | 3_3:+78158329 | Msa0475090:CDS |
| ATACCCGAGACTTGTGGCGT+TGG | 0.574402 | 3_3:+78159307 | Msa0475090:CDS |
| CTGCCAATGCAATTGACCAA+TGG | 0.574973 | 3_3:-78159433 | None:intergenic |
| ATGAATCCTGATTCATCAGA+GGG | 0.575878 | 3_3:-78158408 | None:intergenic |
| GCAAGTAGCTTTCTTAAGTG+TGG | 0.579267 | 3_3:+78157396 | Msa0475090:CDS |
| AGCCGCCACCAACACGGCCT+AGG | 0.579659 | 3_3:-78158923 | None:intergenic |
| TAATATCATCACAGTGAAGT+GGG | 0.583302 | 3_3:+78157168 | Msa0475090:five_prime_UTR |
| ATAATATCATCACAGTGAAG+TGG | 0.587032 | 3_3:+78157167 | Msa0475090:five_prime_UTR |
| TGCTATGATGAAAATCAAAG+AGG | 0.588102 | 3_3:-78158313 | None:intergenic |
| TTCTGGGAAACTTTGCACAC+AGG | 0.588869 | 3_3:-78158193 | None:intergenic |
| GAAATTTGTGGGACACAGAT+GGG | 0.596755 | 3_3:+78157270 | Msa0475090:CDS |
| TTTGGCTTGTTGTAACACAC+AGG | 0.597277 | 3_3:+78157533 | Msa0475090:CDS |
| TCTTGAGTTTAGGGGAGCAG+AGG | 0.602057 | 3_3:+78159812 | Msa0475090:exon |
| TCACTAATCTCATTGTGCAT+AGG | 0.602939 | 3_3:-78158657 | None:intergenic |
| TCCTTTCAATATCCCTACCA+CGG | 0.603422 | 3_3:-78158226 | None:intergenic |
| ACCAGTCATAAAGAGCAGCA+TGG | 0.605771 | 3_3:+78157360 | Msa0475090:CDS |
| AAGGATTTGGGTGACAACGT+TGG | 0.607484 | 3_3:+78157421 | Msa0475090:CDS |
| AAATCAAAGAGGCTTGATCA+GGG | 0.611738 | 3_3:-78158302 | None:intergenic |
| ATTTGGATACCCGAGACTTG+TGG | 0.615622 | 3_3:+78159301 | Msa0475090:CDS |
| TATGTGATAGCAATAACCAT+GGG | 0.616249 | 3_3:+78159395 | Msa0475090:CDS |
| TCACAGTGAAGTGGGAAGAG+AGG | 0.617386 | 3_3:+78157176 | Msa0475090:five_prime_UTR |
| CATAACCAACAACATTCTGA+AGG | 0.619633 | 3_3:-78157504 | None:intergenic |
| CATGAATCCTGATTCATCAG+AGG | 0.621943 | 3_3:-78158409 | None:intergenic |
| CCCGTGGTAGGGATATTGAA+AGG | 0.631908 | 3_3:+78158225 | Msa0475090:CDS |
| GTAGTTGCTGCAACAATGGA+TGG | 0.634037 | 3_3:-78158633 | None:intergenic |
| AGAAGTAGCCGCCACCAACA+CGG | 0.636827 | 3_3:-78158929 | None:intergenic |
| TAGCTTATTGATAAGCAACA+TGG | 0.638232 | 3_3:+78157225 | Msa0475090:exon |
| TTATGTGATAGCAATAACCA+TGG | 0.640331 | 3_3:+78159394 | Msa0475090:CDS |
| GGATCCATATCCAAAACCCA+TGG | 0.641880 | 3_3:-78159411 | None:intergenic |
| AGTCTCTATCTTGAGTTTAG+GGG | 0.646958 | 3_3:+78159804 | Msa0475090:exon |
| AAATGCTCCACATAGAGGAG+AGG | 0.647420 | 3_3:+78158728 | Msa0475090:CDS |
| CCCAGAAAACCGAGGCCCCG+TGG | 0.651101 | 3_3:+78158209 | Msa0475090:CDS |
| ATTGACAATGATAAACAACA+TGG | 0.655646 | 3_3:+78158830 | Msa0475090:CDS |
| ACTTCTCTGAAGTTATAGTG+AGG | 0.664718 | 3_3:+78158946 | Msa0475090:CDS |
| CAAAGTTTCCCAGAAAACCG+AGG | 0.688148 | 3_3:+78158201 | Msa0475090:CDS |
| TTGACAATGATAAACAACAT+GGG | 0.694598 | 3_3:+78158831 | Msa0475090:CDS |
| ATACAAGCAGAGATCCAACT+GGG | 0.706369 | 3_3:-78159520 | None:intergenic |
| AGGCATTTCCAATTTCGCGG+AGG | 0.706578 | 3_3:-78159615 | None:intergenic |
| GGTATAGTAGGAGAGTCCCA+AGG | 0.710600 | 3_3:-78159351 | None:intergenic |
| ATTTGTGGGACACAGATGGG+TGG | 0.741545 | 3_3:+78157273 | Msa0475090:CDS |
| CTTTCAATATCCCTACCACG+GGG | 0.783983 | 3_3:-78158224 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACAATTTATATTACA+CGG | + | chr3_3:78158053-78158072 | Msa0475090:intron | 10.0% |
| !! | TTATAAAAAAACTTAAATGT+CGG | - | chr3_3:78159140-78159159 | None:intergenic | 10.0% |
| !!! | TATGTTTTGATACTTTTTTT+TGG | + | chr3_3:78157834-78157853 | Msa0475090:intron | 15.0% |
| !!! | ATGTTTTGATACTTTTTTTT+GGG | + | chr3_3:78157835-78157854 | Msa0475090:intron | 15.0% |
| !!! | AAAAGTATAAAACCATAATT+TGG | - | chr3_3:78157863-78157882 | None:intergenic | 15.0% |
| !!! | TGGTTTTATACTTTTTTTTA+AGG | + | chr3_3:78157868-78157887 | Msa0475090:intron | 15.0% |
| !! | TATGAAATGAAAATAATACA+TGG | - | chr3_3:78158034-78158053 | None:intergenic | 15.0% |
| !! | AATATAATAGGAACTATAAT+TGG | - | chr3_3:78158564-78158583 | None:intergenic | 15.0% |
| !! | AATTATAGTTCCTATTATAT+TGG | + | chr3_3:78158563-78158582 | Msa0475090:CDS | 15.0% |
| !! | AAAATTAAATTTGCAATTGT+TGG | + | chr3_3:78159835-78159854 | Msa0475090:three_prime_UTR | 15.0% |
| !! | AAATTAAATTTGCAATTGTT+GGG | + | chr3_3:78159836-78159855 | Msa0475090:three_prime_UTR | 15.0% |
| !!! | CATCTTAGTTTTTTTTTTGA+AGG | - | chr3_3:78157080-78157099 | None:intergenic | 20.0% |
| !!! | TGTTTTGATACTTTTTTTTG+GGG | + | chr3_3:78157836-78157855 | Msa0475090:intron | 20.0% |
| !! | CAATGTTAACATTTATGTAT+CGG | + | chr3_3:78158881-78158900 | Msa0475090:CDS | 20.0% |
| !! | TCTCAAAATAGAATAAAGAA+GGG | - | chr3_3:78159000-78159019 | None:intergenic | 20.0% |
| !!! | TCAATATTTGAAGATTTTGA+AGG | - | chr3_3:78159087-78159106 | None:intergenic | 20.0% |
| !!! | AATTTTCTGTTCAAAAAATC+CGG | - | chr3_3:78159284-78159303 | None:intergenic | 20.0% |
| !!! | GATTTTTTGAACAGAAAATT+TGG | + | chr3_3:78159284-78159303 | Msa0475090:intron | 20.0% |
| !! | AATTAAATTTGCAATTGTTG+GGG | + | chr3_3:78159837-78159856 | Msa0475090:three_prime_UTR | 20.0% |
| ! | AGAAAAGTTGAAGAAATTTG+TGG | + | chr3_3:78157258-78157277 | Msa0475090:CDS | 25.0% |
| ! | GAAAAGTTGAAGAAATTTGT+GGG | + | chr3_3:78157259-78157278 | Msa0475090:CDS | 25.0% |
| ! | GTAAGTAACTAATCTAGTTA+TGG | - | chr3_3:78157787-78157806 | None:intergenic | 25.0% |
| ! | GAAATGAAAATAATACATGG+TGG | - | chr3_3:78158031-78158050 | None:intergenic | 25.0% |
| !! | GATTGATTAAAAGTATGAAC+AGG | - | chr3_3:78158384-78158403 | None:intergenic | 25.0% |
| ! | GAGAAGAAAACCAATATAAT+AGG | - | chr3_3:78158576-78158595 | None:intergenic | 25.0% |
| ! | ATCTTCAAAAGTAACATGTT+TGG | - | chr3_3:78158694-78158713 | None:intergenic | 25.0% |
| ! | ATTGACAATGATAAACAACA+TGG | + | chr3_3:78158830-78158849 | Msa0475090:CDS | 25.0% |
| ! | TTGACAATGATAAACAACAT+GGG | + | chr3_3:78158831-78158850 | Msa0475090:CDS | 25.0% |
| ! | GTCTCAAAATAGAATAAAGA+AGG | - | chr3_3:78159001-78159020 | None:intergenic | 25.0% |
| !!! | AGTATCAGAGATCTTTTTTT+TGG | - | chr3_3:78159023-78159042 | None:intergenic | 25.0% |
| ! | CATTTCTCAAGTACAAAATA+AGG | + | chr3_3:78159171-78159190 | Msa0475090:intron | 25.0% |
| !! | TTTGTAACAATTTGAGTTTG+AGG | + | chr3_3:78159208-78159227 | Msa0475090:intron | 25.0% |
| ! | ATAGCATTGTAGAATCAAAA+GGG | - | chr3_3:78159239-78159258 | None:intergenic | 25.0% |
| !! | TATTTGGGTTAAAGAACTTT+GGG | + | chr3_3:78159468-78159487 | Msa0475090:CDS | 25.0% |
| ! | ATGCACAGAATACAAATTTA+TGG | + | chr3_3:78159590-78159609 | Msa0475090:CDS | 25.0% |
| !! | AAATTGGAAATGCCTTATTA+TGG | + | chr3_3:78159623-78159642 | Msa0475090:CDS | 25.0% |
| ! | ATTAAATTTGCAATTGTTGG+GGG | + | chr3_3:78159838-78159857 | Msa0475090:three_prime_UTR | 25.0% |
| ! | AAATAATACTCAAACCTTGT+GGG | - | chr3_3:78159881-78159900 | None:intergenic | 25.0% |
| TCATGAGTACATTTACATGT+TGG | - | chr3_3:78157118-78157137 | None:intergenic | 30.0% | |
| ATAATATCATCACAGTGAAG+TGG | + | chr3_3:78157167-78157186 | Msa0475090:five_prime_UTR | 30.0% | |
| TAATATCATCACAGTGAAGT+GGG | + | chr3_3:78157168-78157187 | Msa0475090:five_prime_UTR | 30.0% | |
| TAGCTTATTGATAAGCAACA+TGG | + | chr3_3:78157225-78157244 | Msa0475090:exon | 30.0% | |
| ! | TTCTACTAGATGTTGTTGTT+TGG | + | chr3_3:78157676-78157695 | Msa0475090:intron | 30.0% |
| CTTTCATATTGAATCAAGTG+TGG | + | chr3_3:78157733-78157752 | Msa0475090:intron | 30.0% | |
| TAACTAATCTAGTTATGGTG+AGG | - | chr3_3:78157782-78157801 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGGGACCAAATTA+TGG | + | chr3_3:78157848-78157867 | Msa0475090:intron | 30.0% |
| !!! | CTATGTTTTTTCATCTTGGT+GGG | + | chr3_3:78158129-78158148 | Msa0475090:CDS | 30.0% |
| TGCTATGATGAAAATCAAAG+AGG | - | chr3_3:78158316-78158335 | None:intergenic | 30.0% | |
| ! | TTGATTTTCATCATAGCAGT+TGG | + | chr3_3:78158318-78158337 | Msa0475090:CDS | 30.0% |
| AAAGTAAAAGAAACCATTGC+TGG | - | chr3_3:78158345-78158364 | None:intergenic | 30.0% | |
| CAACAAAACTCCCATTAAAT+AGG | - | chr3_3:78158466-78158485 | None:intergenic | 30.0% | |
| GCTAGAGAATATGTTTGATT+TGG | + | chr3_3:78158485-78158504 | Msa0475090:CDS | 30.0% | |
| ! | TTTTACCTTAACACAAGCAA+TGG | + | chr3_3:78158752-78158771 | Msa0475090:CDS | 30.0% |
| ATTTACCATTGCTTGTGTTA+AGG | - | chr3_3:78158760-78158779 | None:intergenic | 30.0% | |
| !!! | CAATGGTAAATGCTGATTTT+TGG | + | chr3_3:78158769-78158788 | Msa0475090:CDS | 30.0% |
| !! | ATGTTTGTTTCTATCGTCTT+AGG | + | chr3_3:78158795-78158814 | Msa0475090:CDS | 30.0% |
| CATAGCATTGTAGAATCAAA+AGG | - | chr3_3:78159240-78159259 | None:intergenic | 30.0% | |
| TTATGTGATAGCAATAACCA+TGG | + | chr3_3:78159394-78159413 | Msa0475090:CDS | 30.0% | |
| TATGTGATAGCAATAACCAT+GGG | + | chr3_3:78159395-78159414 | Msa0475090:CDS | 30.0% | |
| ! | GTATTTGGGTTAAAGAACTT+TGG | + | chr3_3:78159467-78159486 | Msa0475090:CDS | 30.0% |
| TTATTTCCGGTACCATAATA+AGG | - | chr3_3:78159638-78159657 | None:intergenic | 30.0% | |
| AAGCAACTCGTTATTATTTC+CGG | - | chr3_3:78159651-78159670 | None:intergenic | 30.0% | |
| !! | ATTTGTTATTCCTTGACTTG+TGG | + | chr3_3:78159686-78159705 | Msa0475090:CDS | 30.0% |
| !!! | AATTTTAGCAGTAGTTTGCT+TGG | + | chr3_3:78159709-78159728 | Msa0475090:CDS | 30.0% |
| TGAGTTTGATCATTGTTCAA+AGG | + | chr3_3:78159744-78159763 | Msa0475090:CDS | 30.0% | |
| !!! | AGGTTTTATTCCCAACTTTA+TGG | + | chr3_3:78159773-78159792 | Msa0475090:CDS | 30.0% |
| TATTCCCAACTTTATGGTAA+TGG | + | chr3_3:78159779-78159798 | Msa0475090:CDS | 30.0% | |
| ATTCCCAACTTTATGGTAAT+GGG | + | chr3_3:78159780-78159799 | Msa0475090:CDS | 30.0% | |
| AAGTCTCTATCTTGAGTTTA+GGG | + | chr3_3:78159803-78159822 | Msa0475090:exon | 30.0% | |
| TTAAATTTGCAATTGTTGGG+GGG | + | chr3_3:78159839-78159858 | Msa0475090:three_prime_UTR | 30.0% | |
| CAAATAATACTCAAACCTTG+TGG | - | chr3_3:78159882-78159901 | None:intergenic | 30.0% | |
| TATCAATAAGCTACCTAGCT+AGG | - | chr3_3:78157218-78157237 | None:intergenic | 35.0% | |
| TTAAGTGTGGCTAAGGATTT+GGG | + | chr3_3:78157409-78157428 | Msa0475090:CDS | 35.0% | |
| CATAACCAACAACATTCTGA+AGG | - | chr3_3:78157507-78157526 | None:intergenic | 35.0% | |
| ! | CTTCAGAATGTTGTTGGTTA+TGG | + | chr3_3:78157505-78157524 | Msa0475090:CDS | 35.0% |
| !! | TTGTTGGTTATGGTCTTGTT+TGG | + | chr3_3:78157515-78157534 | Msa0475090:CDS | 35.0% |
| TCTAGTTATGGTGAGGAAAA+AGG | - | chr3_3:78157775-78157794 | None:intergenic | 35.0% | |
| AGCTGCAAATTATCAATCTC+TGG | - | chr3_3:78158111-78158130 | None:intergenic | 35.0% | |
| !!! | GCAGCTATGTTTTTTCATCT+TGG | + | chr3_3:78158125-78158144 | Msa0475090:intron | 35.0% |
| !!! | GCTATGTTTTTTCATCTTGG+TGG | + | chr3_3:78158128-78158147 | Msa0475090:intron | 35.0% |
| AAATCAAAGAGGCTTGATCA+GGG | - | chr3_3:78158305-78158324 | None:intergenic | 35.0% | |
| AAAATCAAAGAGGCTTGATC+AGG | - | chr3_3:78158306-78158325 | None:intergenic | 35.0% | |
| ATGAATCCTGATTCATCAGA+GGG | - | chr3_3:78158411-78158430 | None:intergenic | 35.0% | |
| TCTCTTAGCTGCCTATTTAA+TGG | + | chr3_3:78158452-78158471 | Msa0475090:CDS | 35.0% | |
| CTCTTAGCTGCCTATTTAAT+GGG | + | chr3_3:78158453-78158472 | Msa0475090:CDS | 35.0% | |
| !! | TAAACCAAAAAGTGCTGATG+AGG | + | chr3_3:78158596-78158615 | Msa0475090:CDS | 35.0% |
| TCACTAATCTCATTGTGCAT+AGG | - | chr3_3:78158660-78158679 | None:intergenic | 35.0% | |
| !!! | CTATGTGGAGCATTTTTTTG+CGG | - | chr3_3:78158723-78158742 | None:intergenic | 35.0% |
| CAAAAAAATGCTCCACATAG+AGG | + | chr3_3:78158723-78158742 | Msa0475090:CDS | 35.0% | |
| GGTCAGATTTGTCAATCTTT+GGG | + | chr3_3:78158852-78158871 | Msa0475090:CDS | 35.0% | |
| ATCAGCATATCCAATTTCCT+AGG | + | chr3_3:78158906-78158925 | Msa0475090:CDS | 35.0% | |
| !! | ACTTCTCTGAAGTTATAGTG+AGG | + | chr3_3:78158946-78158965 | Msa0475090:CDS | 35.0% |
| TTCAAAAAATCCGGCAAAGT+TGG | - | chr3_3:78159275-78159294 | None:intergenic | 35.0% | |
| AACCAAACCTATGGTATAGT+AGG | - | chr3_3:78159366-78159385 | None:intergenic | 35.0% | |
| ! | TACTATACCATAGGTTTGGT+TGG | + | chr3_3:78159365-78159384 | Msa0475090:CDS | 35.0% |
| ! | ATAGCAATAACCATGGGTTT+TGG | + | chr3_3:78159401-78159420 | Msa0475090:CDS | 35.0% |
| !!! | ATAACCATGGGTTTTGGATA+TGG | + | chr3_3:78159407-78159426 | Msa0475090:CDS | 35.0% |
| !! | CAGCAACTTCAGAAGTATTT+GGG | + | chr3_3:78159453-78159472 | Msa0475090:CDS | 35.0% |
| ! | ATAAGGCATTTCCAATTTCG+CGG | - | chr3_3:78159621-78159640 | None:intergenic | 35.0% |
| ! | GAAATGCCTTATTATGGTAC+CGG | + | chr3_3:78159629-78159648 | Msa0475090:CDS | 35.0% |
| TGCTAAAATTCCACAAGTCA+AGG | - | chr3_3:78159699-78159718 | None:intergenic | 35.0% | |
| TCATTGTTCAAAGGACTAAG+AGG | + | chr3_3:78159753-78159772 | Msa0475090:CDS | 35.0% | |
| CTTCCCATTACCATAAAGTT+GGG | - | chr3_3:78159786-78159805 | None:intergenic | 35.0% | |
| ACTTCCCATTACCATAAAGT+TGG | - | chr3_3:78159787-78159806 | None:intergenic | 35.0% | |
| GAAGTCTCTATCTTGAGTTT+AGG | + | chr3_3:78159802-78159821 | Msa0475090:exon | 35.0% | |
| AGTCTCTATCTTGAGTTTAG+GGG | + | chr3_3:78159804-78159823 | Msa0475090:exon | 35.0% | |
| TAAATTTGCAATTGTTGGGG+GGG | + | chr3_3:78159840-78159859 | Msa0475090:three_prime_UTR | 35.0% | |
| ATAAGATAAGCAGCCTAGCT+AGG | + | chr3_3:78157202-78157221 | Msa0475090:five_prime_UTR | 40.0% | |
| AGAAATTTGTGGGACACAGA+TGG | + | chr3_3:78157269-78157288 | Msa0475090:CDS | 40.0% | |
| GAAATTTGTGGGACACAGAT+GGG | + | chr3_3:78157270-78157289 | Msa0475090:CDS | 40.0% | |
| ! | ATGTGGGATATGTCATTTGC+AGG | + | chr3_3:78157310-78157329 | Msa0475090:CDS | 40.0% |
| GCAAGTAGCTTTCTTAAGTG+TGG | + | chr3_3:78157396-78157415 | Msa0475090:CDS | 40.0% | |
| AGCTTTCTTAAGTGTGGCTA+AGG | + | chr3_3:78157402-78157421 | Msa0475090:CDS | 40.0% | |
| CTTAAGTGTGGCTAAGGATT+TGG | + | chr3_3:78157408-78157427 | Msa0475090:CDS | 40.0% | |
| ACAAGTATAACTGCCCAAAC+AGG | - | chr3_3:78157478-78157497 | None:intergenic | 40.0% | |
| GTTTGGGCAGTTATACTTGT+TGG | + | chr3_3:78157478-78157497 | Msa0475090:CDS | 40.0% | |
| !! | TTTGGCTTGTTGTAACACAC+AGG | + | chr3_3:78157533-78157552 | Msa0475090:CDS | 40.0% |
| TCCTTCTTTGCCTTTATGGA+CGG | + | chr3_3:78157558-78157577 | Msa0475090:CDS | 40.0% | |
| CACATACATACCGTCCATAA+AGG | - | chr3_3:78157571-78157590 | None:intergenic | 40.0% | |
| TTCATCTTGGTGGGACAAAA+TGG | + | chr3_3:78158138-78158157 | Msa0475090:CDS | 40.0% | |
| ATACTACAACACAGCAGCAT+TGG | + | chr3_3:78158167-78158186 | Msa0475090:CDS | 40.0% | |
| TCCTTTCAATATCCCTACCA+CGG | - | chr3_3:78158229-78158248 | None:intergenic | 40.0% | |
| GGGATATTGAAAGGATTCGT+TGG | + | chr3_3:78158234-78158253 | Msa0475090:CDS | 40.0% | |
| !! | AAAGGATTCGTTGGCTTAAG+CGG | + | chr3_3:78158243-78158262 | Msa0475090:CDS | 40.0% |
| CATGAATCCTGATTCATCAG+AGG | - | chr3_3:78158412-78158431 | None:intergenic | 40.0% | |
| ! | TGTTCCTCATCAGCACTTTT+TGG | - | chr3_3:78158603-78158622 | None:intergenic | 40.0% |
| GTAAAATCCTCTCCTCTATG+TGG | - | chr3_3:78158738-78158757 | None:intergenic | 40.0% | |
| ! | GTTTCTATCGTCTTAGGTTG+TGG | + | chr3_3:78158801-78158820 | Msa0475090:CDS | 40.0% |
| GGGTCAGATTTGTCAATCTT+TGG | + | chr3_3:78158851-78158870 | Msa0475090:CDS | 40.0% | |
| ATTCAAGCAGTGATGTCCTT+GGG | + | chr3_3:78159335-78159354 | Msa0475090:CDS | 40.0% | |
| CTCCTACTATACCATAGGTT+TGG | + | chr3_3:78159361-78159380 | Msa0475090:CDS | 40.0% | |
| AACTTGTCCAACCAAACCTA+TGG | - | chr3_3:78159375-78159394 | None:intergenic | 40.0% | |
| !! | GTTTTGGATATGGATCCCAT+TGG | + | chr3_3:78159417-78159436 | Msa0475090:CDS | 40.0% |
| ATCCCATTGGTCAATTGCAT+TGG | + | chr3_3:78159430-78159449 | Msa0475090:CDS | 40.0% | |
| TGCCAATGCAATTGACCAAT+GGG | - | chr3_3:78159435-78159454 | None:intergenic | 40.0% | |
| !! | GCAGCAACTTCAGAAGTATT+TGG | + | chr3_3:78159452-78159471 | Msa0475090:CDS | 40.0% |
| ATACAAGCAGAGATCCAACT+GGG | - | chr3_3:78159523-78159542 | None:intergenic | 40.0% | |
| ATCTCTGCTTGTATCTGGAT+TGG | + | chr3_3:78159529-78159548 | Msa0475090:CDS | 40.0% | |
| AACGAGTTGCTTCTTTGCAA+AGG | + | chr3_3:78159659-78159678 | Msa0475090:CDS | 40.0% | |
| AAATTTGCAATTGTTGGGGG+GGG | + | chr3_3:78159841-78159860 | Msa0475090:three_prime_UTR | 40.0% | |
| TGCAAAATGTTTCACCCACA+AGG | + | chr3_3:78159864-78159883 | Msa0475090:three_prime_UTR | 40.0% | |
| TGGTGTTTGTGTGTGCAATG+TGG | + | chr3_3:78157293-78157312 | Msa0475090:CDS | 45.0% | |
| GGTGTTTGTGTGTGCAATGT+GGG | + | chr3_3:78157294-78157313 | Msa0475090:CDS | 45.0% | |
| GCAGGAACAGCTTACATGTT+TGG | + | chr3_3:78157328-78157347 | Msa0475090:CDS | 45.0% | |
| ACCAGTCATAAAGAGCAGCA+TGG | + | chr3_3:78157360-78157379 | Msa0475090:CDS | 45.0% | |
| CCAGTCATAAAGAGCAGCAT+GGG | + | chr3_3:78157361-78157380 | Msa0475090:CDS | 45.0% | |
| AAGGATTTGGGTGACAACGT+TGG | + | chr3_3:78157421-78157440 | Msa0475090:CDS | 45.0% | |
| ! | ACAACGTTGGACTTCTAGCT+GGG | + | chr3_3:78157434-78157453 | Msa0475090:CDS | 45.0% |
| CTGGGTTTATCAGCAAAGCT+TGG | + | chr3_3:78157452-78157471 | Msa0475090:CDS | 45.0% | |
| GGTGTCCTTCAGAATGTTGT+TGG | + | chr3_3:78157499-78157518 | Msa0475090:CDS | 45.0% | |
| GGCTTCCTTCTTTGCCTTTA+TGG | + | chr3_3:78157554-78157573 | Msa0475090:CDS | 45.0% | |
| ACCGTCCATAAAGGCAAAGA+AGG | - | chr3_3:78157562-78157581 | None:intergenic | 45.0% | |
| ! | TTCTGGGAAACTTTGCACAC+AGG | - | chr3_3:78158196-78158215 | None:intergenic | 45.0% |
| CAAAGTTTCCCAGAAAACCG+AGG | + | chr3_3:78158201-78158220 | Msa0475090:CDS | 45.0% | |
| CTTTCAATATCCCTACCACG+GGG | - | chr3_3:78158227-78158246 | None:intergenic | 45.0% | |
| CCTTTCAATATCCCTACCAC+GGG | - | chr3_3:78158228-78158247 | None:intergenic | 45.0% | |
| TCTAGACCCTCTGATGAATC+AGG | + | chr3_3:78158402-78158421 | Msa0475090:CDS | 45.0% | |
| GTAGTTGCTGCAACAATGGA+TGG | - | chr3_3:78158636-78158655 | None:intergenic | 45.0% | |
| AGGTGTAGTTGCTGCAACAA+TGG | - | chr3_3:78158640-78158659 | None:intergenic | 45.0% | |
| AAATGCTCCACATAGAGGAG+AGG | + | chr3_3:78158728-78158747 | Msa0475090:CDS | 45.0% | |
| ! | ATCGTCTTAGGTTGTGGATC+AGG | + | chr3_3:78158807-78158826 | Msa0475090:CDS | 45.0% |
| AAAATCCGGCAAAGTTGGAG+CGG | - | chr3_3:78159270-78159289 | None:intergenic | 45.0% | |
| ATTTGGATACCCGAGACTTG+TGG | + | chr3_3:78159301-78159320 | Msa0475090:CDS | 45.0% | |
| GATTCAAGCAGTGATGTCCT+TGG | + | chr3_3:78159334-78159353 | Msa0475090:CDS | 45.0% | |
| GGACTCTCCTACTATACCAT+AGG | + | chr3_3:78159356-78159375 | Msa0475090:CDS | 45.0% | |
| GGATCCATATCCAAAACCCA+TGG | - | chr3_3:78159414-78159433 | None:intergenic | 45.0% | |
| CTGCCAATGCAATTGACCAA+TGG | - | chr3_3:78159436-78159455 | None:intergenic | 45.0% | |
| CTTACAATTGCTAGCCCAGT+TGG | + | chr3_3:78159506-78159525 | Msa0475090:CDS | 45.0% | |
| GATACAAGCAGAGATCCAAC+TGG | - | chr3_3:78159524-78159543 | None:intergenic | 45.0% | |
| GTTGGATCTCTGCTTGTATC+TGG | + | chr3_3:78159524-78159543 | Msa0475090:CDS | 45.0% | |
| TCACAGTGAAGTGGGAAGAG+AGG | + | chr3_3:78157176-78157195 | Msa0475090:five_prime_UTR | 50.0% | |
| ATTTGTGGGACACAGATGGG+TGG | + | chr3_3:78157273-78157292 | Msa0475090:CDS | 50.0% | |
| CCCATGCTGCTCTTTATGAC+TGG | - | chr3_3:78157364-78157383 | None:intergenic | 50.0% | |
| GACAACGTTGGACTTCTAGC+TGG | + | chr3_3:78157433-78157452 | Msa0475090:CDS | 50.0% | |
| TCAGCAAAGCTTGGCCTGTT+TGG | + | chr3_3:78157461-78157480 | Msa0475090:CDS | 50.0% | |
| CAGCAAAGCTTGGCCTGTTT+GGG | + | chr3_3:78157462-78157481 | Msa0475090:CDS | 50.0% | |
| CCCGTGGTAGGGATATTGAA+AGG | + | chr3_3:78158225-78158244 | Msa0475090:CDS | 50.0% | |
| TTGGCTTAAGCGGCGCAATT+TGG | + | chr3_3:78158253-78158272 | Msa0475090:CDS | 50.0% | |
| CATAGCAGTTGGTCCAGCAA+TGG | + | chr3_3:78158329-78158348 | Msa0475090:CDS | 50.0% | |
| TCCAATTTCCTAGGCCGTGT+TGG | + | chr3_3:78158915-78158934 | Msa0475090:CDS | 50.0% | |
| ACCAACACGGCCTAGGAAAT+TGG | - | chr3_3:78158919-78158938 | None:intergenic | 50.0% | |
| AATTTCCTAGGCCGTGTTGG+TGG | + | chr3_3:78158918-78158937 | Msa0475090:CDS | 50.0% | |
| ATGTTCCGCTCCAACTTTGC+CGG | + | chr3_3:78159262-78159281 | Msa0475090:intron | 50.0% | |
| ATTGCCAACGCCACAAGTCT+CGG | - | chr3_3:78159314-78159333 | None:intergenic | 50.0% | |
| GGTATAGTAGGAGAGTCCCA+AGG | - | chr3_3:78159354-78159373 | None:intergenic | 50.0% | |
| TTATGGAGCCTCCGCGAAAT+TGG | + | chr3_3:78159607-78159626 | Msa0475090:CDS | 50.0% | |
| AGGCATTTCCAATTTCGCGG+AGG | - | chr3_3:78159618-78159637 | None:intergenic | 50.0% | |
| !! | GTAGTTTGCTTGGTTGCAGC+TGG | + | chr3_3:78159719-78159738 | Msa0475090:CDS | 50.0% |
| TCTTGAGTTTAGGGGAGCAG+AGG | + | chr3_3:78159812-78159831 | Msa0475090:exon | 50.0% | |
| AGAAGTAGCCGCCACCAACA+CGG | - | chr3_3:78158932-78158951 | None:intergenic | 55.0% | |
| ATACCCGAGACTTGTGGCGT+TGG | + | chr3_3:78159307-78159326 | Msa0475090:CDS | 55.0% | |
| TTGCCAACGCCACAAGTCTC+GGG | - | chr3_3:78159313-78159332 | None:intergenic | 55.0% | |
| AAAACCGAGGCCCCGTGGTA+GGG | + | chr3_3:78158214-78158233 | Msa0475090:CDS | 60.0% | |
| ATATCCCTACCACGGGGCCT+CGG | - | chr3_3:78158221-78158240 | None:intergenic | 60.0% | |
| ! | TTCCTAGGCCGTGTTGGTGG+CGG | + | chr3_3:78158921-78158940 | Msa0475090:CDS | 60.0% |
| ! | CCACGGGGCCTCGGTTTTCT+GGG | - | chr3_3:78158212-78158231 | None:intergenic | 65.0% |
| ! | ACCACGGGGCCTCGGTTTTC+TGG | - | chr3_3:78158213-78158232 | None:intergenic | 65.0% |
| GAAAACCGAGGCCCCGTGGT+AGG | + | chr3_3:78158213-78158232 | Msa0475090:CDS | 65.0% | |
| CCCAGAAAACCGAGGCCCCG+TGG | + | chr3_3:78158209-78158228 | Msa0475090:CDS | 70.0% | |
| AGCCGCCACCAACACGGCCT+AGG | - | chr3_3:78158926-78158945 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78157069 | 78159969 | 78157069 | ID=Msa0475090;Name=Msa0475090 |
| chr3_3 | mRNA | 78157069 | 78159969 | 78157069 | ID=Msa0475090-mRNA-1;Parent=Msa0475090;Name=Msa0475090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|0.66|1|1|1|3|152|564 |
| chr3_3 | exon | 78157069 | 78157579 | 78157069 | ID=Msa0475090-mRNA-1:exon:20990;Parent=Msa0475090-mRNA-1 |
| chr3_3 | exon | 78158129 | 78158967 | 78158129 | ID=Msa0475090-mRNA-1:exon:20991;Parent=Msa0475090-mRNA-1 |
| chr3_3 | exon | 78159298 | 78159969 | 78159298 | ID=Msa0475090-mRNA-1:exon:20992;Parent=Msa0475090-mRNA-1 |
| chr3_3 | five_prime_UTR | 78157069 | 78157243 | 78157069 | ID=Msa0475090-mRNA-1:five_prime_utr;Parent=Msa0475090-mRNA-1 |
| chr3_3 | CDS | 78157244 | 78157579 | 78157244 | ID=Msa0475090-mRNA-1:cds;Parent=Msa0475090-mRNA-1 |
| chr3_3 | CDS | 78158129 | 78158967 | 78158129 | ID=Msa0475090-mRNA-1:cds;Parent=Msa0475090-mRNA-1 |
| chr3_3 | CDS | 78159298 | 78159817 | 78159298 | ID=Msa0475090-mRNA-1:cds;Parent=Msa0475090-mRNA-1 |
| chr3_3 | three_prime_UTR | 78159818 | 78159969 | 78159818 | ID=Msa0475090-mRNA-1:three_prime_utr;Parent=Msa0475090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
