Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379100 | XP_003602802.1 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379100 | sp|F4I9E1|NFD4_ARATH | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 4.60e-31 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379100 | G7J3V8 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044180 | Msa0379100 | 0.806974 | 6.339840e-50 | -8.615850e-47 |
| Msa0154270 | Msa0379100 | 0.812429 | 4.258058e-51 | -8.615850e-47 |
| Msa0197030 | Msa0379100 | 0.801848 | 7.417224e-49 | -8.615850e-47 |
| Msa0364780 | Msa0379100 | 0.822931 | 1.818503e-53 | -8.615850e-47 |
| Msa0379100 | Msa0412190 | 0.809238 | 2.089099e-50 | -8.615850e-47 |
| Msa0379100 | Msa0428730 | 0.920865 | 7.439480e-88 | -8.615850e-47 |
| Msa0379100 | Msa0456760 | 0.830119 | 3.514095e-55 | -8.615850e-47 |
| Msa0379100 | Msa0475090 | 0.895413 | 9.812984e-76 | -8.615850e-47 |
| Msa0379100 | Msa0504090 | 0.821208 | 4.561794e-53 | -8.615850e-47 |
| Msa0379100 | Msa1119570 | 0.814973 | 1.172495e-51 | -8.615850e-47 |
| Msa0379100 | Msa1137940 | 0.831271 | 1.834475e-55 | -8.615850e-47 |
| Msa0379100 | Msa1158090 | 0.806339 | 8.629323e-50 | -8.615850e-47 |
| Msa0379100 | Msa1180050 | 0.810794 | 9.653711e-51 | -8.615850e-47 |
| Msa0379100 | Msa1198720 | 0.819740 | 9.908999e-53 | -8.615850e-47 |
| Msa0379100 | Msa1270770 | 0.805211 | 1.489115e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379100 | MtrunA17_Chr3g0132161 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1131 |
| Msa0379100 | MtrunA17_Chr7g0225191 | 50.252 | 595 | 247 | 6 | 1 | 559 | 1 | 582 | 0.0 | 555 |
| Msa0379100 | MtrunA17_Chr1g0210274 | 35.179 | 560 | 325 | 10 | 10 | 554 | 21 | 557 | 6.37e-102 | 320 |
| Msa0379100 | MtrunA17_Chr1g0210284 | 34.220 | 564 | 325 | 10 | 10 | 554 | 21 | 557 | 3.66e-100 | 315 |
| Msa0379100 | MtrunA17_Chr2g0304561 | 33.039 | 566 | 341 | 6 | 16 | 561 | 13 | 560 | 2.00e-99 | 312 |
| Msa0379100 | MtrunA17_Chr5g0405621 | 35.484 | 558 | 312 | 11 | 9 | 557 | 7 | 525 | 7.56e-98 | 307 |
| Msa0379100 | MtrunA17_Chr1g0210291 | 34.477 | 554 | 326 | 10 | 15 | 554 | 25 | 555 | 1.62e-96 | 306 |
| Msa0379100 | MtrunA17_Chr4g0064981 | 32.302 | 582 | 349 | 7 | 7 | 561 | 3 | 566 | 2.88e-95 | 302 |
| Msa0379100 | MtrunA17_Chr4g0037301 | 34.608 | 549 | 327 | 7 | 15 | 557 | 15 | 537 | 5.47e-95 | 300 |
| Msa0379100 | MtrunA17_Chr7g0264861 | 34.955 | 555 | 332 | 8 | 15 | 554 | 29 | 569 | 1.22e-92 | 296 |
| Msa0379100 | MtrunA17_Chr1g0171591 | 33.692 | 558 | 335 | 9 | 15 | 554 | 24 | 564 | 3.34e-90 | 289 |
| Msa0379100 | MtrunA17_Chr1g0174101 | 32.337 | 569 | 341 | 10 | 6 | 554 | 11 | 555 | 7.68e-86 | 278 |
| Msa0379100 | MtrunA17_Chr2g0330551 | 31.634 | 569 | 324 | 10 | 10 | 554 | 2 | 529 | 1.17e-80 | 263 |
| Msa0379100 | MtrunA17_Chr5g0442481 | 31.522 | 552 | 332 | 10 | 15 | 556 | 11 | 526 | 1.88e-73 | 243 |
| Msa0379100 | MtrunA17_Chr7g0251871 | 25.699 | 572 | 368 | 11 | 13 | 553 | 5 | 550 | 2.77e-39 | 151 |
| Msa0379100 | MtrunA17_Chr2g0333371 | 25.937 | 347 | 187 | 5 | 231 | 561 | 4 | 296 | 9.82e-34 | 130 |
| Msa0379100 | MtrunA17_Chr5g0408921 | 24.109 | 589 | 362 | 19 | 14 | 553 | 6 | 558 | 1.33e-29 | 123 |
| Msa0379100 | MtrunA17_Chr3g0106801 | 23.529 | 544 | 375 | 7 | 15 | 554 | 7 | 513 | 6.01e-29 | 120 |
| Msa0379100 | MtrunA17_Chr3g0106821 | 23.035 | 369 | 273 | 4 | 15 | 381 | 7 | 366 | 3.99e-23 | 101 |
| Msa0379100 | MtrunA17_Chr8g0369621 | 28.144 | 167 | 118 | 2 | 14 | 180 | 47 | 211 | 2.46e-15 | 79.3 |
| Msa0379100 | MtrunA17_Chr8g0369621 | 26.482 | 253 | 155 | 7 | 311 | 556 | 374 | 602 | 8.86e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379100 | AT5G50630.1 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| Msa0379100 | AT5G50520.1 | 50.090 | 557 | 246 | 8 | 5 | 557 | 6 | 534 | 0.0 | 551 |
| Msa0379100 | AT3G01930.2 | 49.834 | 604 | 236 | 8 | 3 | 562 | 4 | 584 | 0.0 | 544 |
| Msa0379100 | AT5G14120.1 | 47.739 | 597 | 254 | 6 | 3 | 562 | 4 | 579 | 0.0 | 530 |
| Msa0379100 | AT3G01930.1 | 47.166 | 494 | 194 | 8 | 113 | 562 | 1 | 471 | 1.30e-134 | 400 |
| Msa0379100 | AT3G01930.3 | 51.025 | 439 | 165 | 6 | 3 | 398 | 4 | 435 | 2.96e-134 | 398 |
| Msa0379100 | AT2G39210.1 | 36.092 | 568 | 310 | 11 | 15 | 557 | 21 | 560 | 3.55e-105 | 329 |
| Msa0379100 | AT2G28120.1 | 35.135 | 555 | 329 | 9 | 11 | 554 | 13 | 547 | 3.96e-99 | 312 |
| Msa0379100 | AT4G34950.1 | 33.795 | 577 | 320 | 13 | 15 | 562 | 16 | 559 | 1.15e-97 | 308 |
| Msa0379100 | AT1G80530.1 | 32.470 | 579 | 337 | 7 | 7 | 561 | 3 | 551 | 1.38e-92 | 295 |
| Msa0379100 | AT2G16660.1 | 33.979 | 568 | 322 | 11 | 5 | 557 | 4 | 533 | 1.89e-90 | 289 |
| Msa0379100 | AT1G74780.1 | 32.389 | 565 | 313 | 12 | 15 | 556 | 7 | 525 | 1.18e-79 | 260 |
| Msa0379100 | AT2G34350.1 | 30.511 | 567 | 324 | 10 | 10 | 556 | 2 | 518 | 4.02e-79 | 258 |
| Msa0379100 | AT2G34350.2 | 30.511 | 567 | 324 | 10 | 10 | 556 | 2 | 518 | 4.02e-79 | 258 |
| Msa0379100 | AT1G18940.1 | 30.427 | 562 | 321 | 11 | 15 | 557 | 9 | 519 | 5.54e-73 | 242 |
| Msa0379100 | AT2G34355.1 | 28.975 | 566 | 328 | 13 | 12 | 556 | 4 | 516 | 5.83e-71 | 237 |
| Msa0379100 | AT2G16660.2 | 34.739 | 403 | 234 | 7 | 4 | 392 | 3 | 390 | 3.75e-65 | 218 |
| Msa0379100 | AT2G34355.2 | 28.469 | 418 | 233 | 12 | 152 | 556 | 2 | 366 | 9.74e-41 | 152 |
| Msa0379100 | AT4G19450.1 | 27.069 | 580 | 359 | 16 | 14 | 555 | 6 | 559 | 3.42e-40 | 154 |
| Msa0379100 | AT5G45275.1 | 24.958 | 589 | 358 | 15 | 14 | 555 | 6 | 557 | 5.56e-35 | 139 |
| Msa0379100 | AT3G01630.2 | 24.468 | 564 | 372 | 13 | 14 | 559 | 40 | 567 | 3.97e-33 | 134 |
| Msa0379100 | AT3G01630.1 | 24.468 | 564 | 372 | 13 | 14 | 559 | 22 | 549 | 4.01e-33 | 133 |
| Msa0379100 | AT4G19450.2 | 27.228 | 404 | 253 | 12 | 14 | 381 | 6 | 404 | 8.64e-33 | 130 |
| Msa0379100 | AT1G31470.1 | 25.088 | 570 | 370 | 18 | 14 | 564 | 42 | 573 | 4.67e-32 | 130 |
| Msa0379100 | AT2G30300.1 | 23.693 | 574 | 321 | 14 | 16 | 555 | 8 | 498 | 8.88e-27 | 114 |
Find 151 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCCTTCTTTGCCTTTA+TGG | 0.120915 | 3_1:+79990384 | Msa0379100:CDS |
| GCAGCAACTTCAGAAGTATT+TGG | 0.160612 | 3_1:+79992273 | Msa0379100:CDS |
| CTTAAGTGTGGCTAAGGATT+TGG | 0.185948 | 3_1:+79990238 | Msa0379100:CDS |
| GTTGGATCTCTGCTTGTATC+TGG | 0.224970 | 3_1:+79992345 | Msa0379100:CDS |
| AAGCACAAAATACAAATTTA+TGG | 0.229850 | 3_1:+79992411 | Msa0379100:CDS |
| TCTCTTAGCTGCCTATTTAA+TGG | 0.232957 | 3_1:+79991274 | Msa0379100:CDS |
| AAGCAACTCGTTATTATTTC+CGG | 0.233736 | 3_1:-79992469 | None:intergenic |
| ATGTTTGTTTCTATCGTCTT+AGG | 0.238459 | 3_1:+79991617 | Msa0379100:CDS |
| ACCAACACGGCCTAGGAAAT+TGG | 0.240141 | 3_1:-79991738 | None:intergenic |
| GGGTCAGATTTGTCAATCTT+TGG | 0.262023 | 3_1:+79991673 | Msa0379100:CDS |
| CTTCAGAATGTTGTTGGTTA+TGG | 0.262768 | 3_1:+79990335 | Msa0379100:CDS |
| TTATGGAGCCTCCGCGAAAT+TGG | 0.264431 | 3_1:+79992428 | Msa0379100:CDS |
| TTGGCTTAAGCGGCGCAATT+TGG | 0.265189 | 3_1:+79991075 | Msa0379100:CDS |
| TTCATCTTGGTGGGACAAAA+TGG | 0.273357 | 3_1:+79990960 | Msa0379100:CDS |
| AATTATAGTTCCTATTATAT+TGG | 0.276451 | 3_1:+79991385 | Msa0379100:CDS |
| AAGTCTCTATCTTGAGTTTA+GGG | 0.284035 | 3_1:+79992624 | Msa0379100:exon |
| CTCTTAGCTGCCTATTTAAT+GGG | 0.284213 | 3_1:+79991275 | Msa0379100:CDS |
| TTATTTCCGGTACCATAATA+AGG | 0.284663 | 3_1:-79992456 | None:intergenic |
| CAACAAAATTCCCATTAAAT+AGG | 0.293559 | 3_1:-79991285 | None:intergenic |
| AATATAATAGGAACTATAAT+TGG | 0.296483 | 3_1:-79991383 | None:intergenic |
| TCAGCAAAGCTTGGCCTGTT+TGG | 0.301872 | 3_1:+79990291 | Msa0379100:CDS |
| AAATTGGCAATGCCTTATTA+TGG | 0.304344 | 3_1:+79992444 | Msa0379100:CDS |
| GAGAAGAAAACCAATATAAT+AGG | 0.316323 | 3_1:-79991395 | None:intergenic |
| ATAGCAATAACCATGGGTTT+TGG | 0.320887 | 3_1:+79992222 | Msa0379100:CDS |
| AAAATTAAATTTGCAATTGT+TGG | 0.324117 | 3_1:+79992656 | Msa0379100:three_prime_UTR |
| TTAAGTGTGGCTAAGGATTT+GGG | 0.328079 | 3_1:+79990239 | Msa0379100:CDS |
| CAGCAAAGCTTGGCCTGTTT+GGG | 0.333110 | 3_1:+79990292 | Msa0379100:CDS |
| CAGCAACTTCAGAAGTATTT+GGG | 0.333578 | 3_1:+79992274 | Msa0379100:CDS |
| ATTCCCAACTTTATGGTAAT+GGG | 0.335479 | 3_1:+79992601 | Msa0379100:CDS |
| GCTAGAGAATATGTTTGATT+TGG | 0.340300 | 3_1:+79991307 | Msa0379100:CDS |
| TATTCCCAACTTTATGGTAA+TGG | 0.342343 | 3_1:+79992600 | Msa0379100:CDS |
| AAATTAAATTTGCAATTGTT+GGG | 0.345446 | 3_1:+79992657 | Msa0379100:three_prime_UTR |
| GAAGTCTCTATCTTGAGTTT+AGG | 0.351073 | 3_1:+79992623 | Msa0379100:exon |
| ATCTTCAAAAGTAACATGTT+TGG | 0.359540 | 3_1:-79991513 | None:intergenic |
| GGTCAGATTTGTCAATCTTT+GGG | 0.365348 | 3_1:+79991674 | Msa0379100:CDS |
| GTTTGGGCAGTTATACTTGT+TGG | 0.387389 | 3_1:+79990308 | Msa0379100:CDS |
| GTTTCTATCGTCTTAGGTTG+TGG | 0.394738 | 3_1:+79991623 | Msa0379100:CDS |
| AAAATCAAAGAGGCTTGATC+AGG | 0.403361 | 3_1:-79991125 | None:intergenic |
| TATTTGGGTTAAAGAACTTT+GGG | 0.404022 | 3_1:+79992289 | Msa0379100:CDS |
| GCAGGAACAGCTTACATGTT+TGG | 0.404543 | 3_1:+79990158 | Msa0379100:CDS |
| ATCGTCTTAGGTTGTGGATC+AGG | 0.406553 | 3_1:+79991629 | Msa0379100:CDS |
| GTAGTTTGCTTGGTTGCAGC+TGG | 0.409953 | 3_1:+79992540 | Msa0379100:CDS |
| TCTAGACCCTCTGATGAATC+AGG | 0.413206 | 3_1:+79991224 | Msa0379100:CDS |
| ATTTACCATTGCTTGTGTTA+AGG | 0.413356 | 3_1:-79991579 | None:intergenic |
| TTGTTGGTTATGGTCTTGTT+TGG | 0.418799 | 3_1:+79990345 | Msa0379100:CDS |
| TACTATACCATAGGTTTGGT+TGG | 0.429856 | 3_1:+79992186 | Msa0379100:CDS |
| GACAACGTTGGACTTCTAGC+TGG | 0.436727 | 3_1:+79990263 | Msa0379100:CDS |
| AGCTTTCTTAAGTGTGGCTA+AGG | 0.438962 | 3_1:+79990232 | Msa0379100:CDS |
| GTATTTGGGTTAAAGAACTT+TGG | 0.439987 | 3_1:+79992288 | Msa0379100:CDS |
| AAAGTTAAAGAAACCATTGC+TGG | 0.440366 | 3_1:-79991164 | None:intergenic |
| GGTGTTTGTGTGTGCAATGT+GGG | 0.443279 | 3_1:+79990124 | Msa0379100:CDS |
| CACACACATACTGTCCATAA+AGG | 0.443962 | 3_1:-79990398 | None:intergenic |
| CTCCTACTATACCATAGGTT+TGG | 0.445658 | 3_1:+79992182 | Msa0379100:CDS |
| ACTTCCCATTACCATAAAGT+TGG | 0.446345 | 3_1:-79992605 | None:intergenic |
| ATTGCCAACGCCACAAGTCT+CGG | 0.458481 | 3_1:-79992132 | None:intergenic |
| AGAAAAGTTGAAGAAATTTG+TGG | 0.464182 | 3_1:+79990088 | Msa0379100:CDS |
| CTTCCCATTACCATAAAGTT+GGG | 0.464254 | 3_1:-79992604 | None:intergenic |
| GGTGTCCTTCAGAATGTTGT+TGG | 0.468337 | 3_1:+79990329 | Msa0379100:CDS |
| TTCCTAGGCCGTGTTGGTGG+CGG | 0.469820 | 3_1:+79991743 | Msa0379100:CDS |
| ATGTGGGATATGTCATTTGC+AGG | 0.471152 | 3_1:+79990140 | Msa0379100:CDS |
| ATATCCCTACCACGGGGCCT+CGG | 0.474408 | 3_1:-79991040 | None:intergenic |
| ATCTCTGCTTGTATCTGGAT+TGG | 0.476420 | 3_1:+79992350 | Msa0379100:CDS |
| CTTACAATTGCTAGCCCAGT+TGG | 0.478016 | 3_1:+79992327 | Msa0379100:CDS |
| CAATGTTAACATTTATGTAT+CGG | 0.479065 | 3_1:+79991703 | Msa0379100:CDS |
| ACAAGTATAACTGCCCAAAC+AGG | 0.483574 | 3_1:-79990305 | None:intergenic |
| ATTTGTTATTCCTTGACTTG+TGG | 0.484082 | 3_1:+79992507 | Msa0379100:CDS |
| GAAAACCGAGGCCCCGTGGT+AGG | 0.484749 | 3_1:+79991035 | Msa0379100:CDS |
| GAAAAGTTGAAGAAATTTGT+GGG | 0.485863 | 3_1:+79990089 | Msa0379100:CDS |
| GATTGATTAAAAGTATGAAC+AGG | 0.486679 | 3_1:-79991203 | None:intergenic |
| TGCTAATGCAATTGACCAAT+GGG | 0.487067 | 3_1:-79992253 | None:intergenic |
| AAAGGATTCGTTGGCTTAAG+CGG | 0.491176 | 3_1:+79991065 | Msa0379100:CDS |
| AAATAATACTCAAACCTTGT+GGG | 0.494390 | 3_1:-79992698 | None:intergenic |
| GCAATGCCTTATTATGGTAC+CGG | 0.495270 | 3_1:+79992450 | Msa0379100:CDS |
| TCATTGTTCAAAGGACTAAG+AGG | 0.496212 | 3_1:+79992574 | Msa0379100:CDS |
| ACTGTCCATAAAGGCAAAGA+AGG | 0.500741 | 3_1:-79990389 | None:intergenic |
| ATAAGATAAGCAGCCTAGCT+AGG | 0.501618 | 3_1:+79990032 | Msa0379100:five_prime_UTR |
| TATCAATAAGCTACCTAGCT+AGG | 0.502972 | 3_1:-79990045 | None:intergenic |
| TGCAAAATGTTTCACCCACA+AGG | 0.507402 | 3_1:+79992684 | Msa0379100:three_prime_UTR |
| ATTCAAGCAGTGATGTCCTT+GGG | 0.509232 | 3_1:+79992156 | Msa0379100:CDS |
| TCCAATTTCCTAGGCCGTGT+TGG | 0.509421 | 3_1:+79991737 | Msa0379100:CDS |
| GATACAAGCAGAGATCCAAC+TGG | 0.510888 | 3_1:-79992342 | None:intergenic |
| GATTCAAGCAGTGATGTCCT+TGG | 0.514626 | 3_1:+79992155 | Msa0379100:CDS |
| GGGATATTGAAAGGATTCGT+TGG | 0.515288 | 3_1:+79991056 | Msa0379100:CDS |
| ATACTACAACACAGCAGCAT+TGG | 0.515438 | 3_1:+79990989 | Msa0379100:CDS |
| ACAACGTTGGACTTCTAGCT+GGG | 0.518106 | 3_1:+79990264 | Msa0379100:CDS |
| AACTTGTCCAACCAAACCTA+TGG | 0.519795 | 3_1:-79992193 | None:intergenic |
| TGAGTTTGATCATTGTTCAA+AGG | 0.522810 | 3_1:+79992565 | Msa0379100:CDS |
| CTGGGTTTATCAGCAAAGCT+TGG | 0.525007 | 3_1:+79990282 | Msa0379100:CDS |
| TTGCCAACGCCACAAGTCTC+GGG | 0.527950 | 3_1:-79992131 | None:intergenic |
| AACGAGTTGCTTCTTTGCGA+AGG | 0.528487 | 3_1:+79992480 | Msa0379100:CDS |
| ATCAGCATATCCAATTTCCT+AGG | 0.530608 | 3_1:+79991728 | Msa0379100:CDS |
| AATTAAATTTGCAATTGTTG+GGG | 0.531399 | 3_1:+79992658 | Msa0379100:three_prime_UTR |
| AGGTGTAGTTGCTGCAACAA+TGG | 0.531721 | 3_1:-79991459 | None:intergenic |
| TGCTAAAATTCCACAAGTCA+AGG | 0.533451 | 3_1:-79992517 | None:intergenic |
| ATTAAATTTGCAATTGTTGG+GGG | 0.534670 | 3_1:+79992659 | Msa0379100:three_prime_UTR |
| TTAAATTTGCAATTGTTGGG+GGG | 0.535850 | 3_1:+79992660 | Msa0379100:three_prime_UTR |
| AACCAAACCTATGGTATAGT+AGG | 0.541846 | 3_1:-79992184 | None:intergenic |
| TCATGAGTACATTTACATGT+TGG | 0.542028 | 3_1:-79989945 | None:intergenic |
| CCTTTCAATATCCCTACCAC+GGG | 0.542176 | 3_1:-79991047 | None:intergenic |
| TAAATTTGCAATTGTTGGGG+GGG | 0.543482 | 3_1:+79992661 | Msa0379100:three_prime_UTR |
| CCCATGCTGCTCTTTATGAC+TGG | 0.544672 | 3_1:-79990191 | None:intergenic |
| CAAATAATACTCAAACCTTG+TGG | 0.548459 | 3_1:-79992699 | None:intergenic |
| GGACTCTCCTACTATACCAT+AGG | 0.548639 | 3_1:+79992177 | Msa0379100:CDS |
| TGGTGTTTGTGTGTGCAATG+TGG | 0.552532 | 3_1:+79990123 | Msa0379100:CDS |
| AATTTCCTAGGCCGTGTTGG+TGG | 0.553242 | 3_1:+79991740 | Msa0379100:CDS |
| AGCCGCCACCAACACGGCCT+AGG | 0.556029 | 3_1:-79991745 | None:intergenic |
| AGAAATTTGTGGGACACAGA+TGG | 0.556960 | 3_1:+79990099 | Msa0379100:CDS |
| ATAAGGCATTGCCAATTTCG+CGG | 0.557317 | 3_1:-79992439 | None:intergenic |
| AAAACCGAGGCCCCGTGGTA+GGG | 0.558213 | 3_1:+79991036 | Msa0379100:CDS |
| GTAAAATCCTCTCCTCTATG+TGG | 0.564577 | 3_1:-79991557 | None:intergenic |
| CCAGTCATAAAGAGCAGCAT+GGG | 0.570468 | 3_1:+79990191 | Msa0379100:CDS |
| CATAGCAGTTGGTCCAGCAA+TGG | 0.571113 | 3_1:+79991151 | Msa0379100:CDS |
| CTGCTAATGCAATTGACCAA+TGG | 0.572591 | 3_1:-79992254 | None:intergenic |
| ATACCCGAGACTTGTGGCGT+TGG | 0.574402 | 3_1:+79992128 | Msa0379100:CDS |
| ATGAATCCTGATTCATCAGA+GGG | 0.575878 | 3_1:-79991230 | None:intergenic |
| GCAAGTAGCTTTCTTAAGTG+TGG | 0.579267 | 3_1:+79990226 | Msa0379100:CDS |
| TAATATCATCACAGTGAAGT+GGG | 0.583302 | 3_1:+79989998 | Msa0379100:five_prime_UTR |
| ATAATATCATCACAGTGAAG+TGG | 0.587032 | 3_1:+79989997 | Msa0379100:five_prime_UTR |
| TGCTATGATGAAAATCAAAG+AGG | 0.588102 | 3_1:-79991135 | None:intergenic |
| TTCTGGGAAACTTTGCACAC+AGG | 0.588869 | 3_1:-79991015 | None:intergenic |
| TCTTCTCTGAAGTTATAGTG+AGG | 0.594043 | 3_1:+79991768 | Msa0379100:CDS |
| GAAATTTGTGGGACACAGAT+GGG | 0.596755 | 3_1:+79990100 | Msa0379100:CDS |
| TTTGGCTTGTTGTAACACAC+AGG | 0.597277 | 3_1:+79990363 | Msa0379100:CDS |
| TCTTGAGTTTAGGGGAGCAG+AGG | 0.602057 | 3_1:+79992633 | Msa0379100:exon |
| TCACTAATCTCATTGTGCAT+AGG | 0.602939 | 3_1:-79991479 | None:intergenic |
| TCCTTTCAATATCCCTACCA+CGG | 0.603422 | 3_1:-79991048 | None:intergenic |
| ACCAGTCATAAAGAGCAGCA+TGG | 0.605771 | 3_1:+79990190 | Msa0379100:CDS |
| AAGGATTTGGGTGACAACGT+TGG | 0.607484 | 3_1:+79990251 | Msa0379100:CDS |
| AAATCAAAGAGGCTTGATCA+GGG | 0.611738 | 3_1:-79991124 | None:intergenic |
| ATTTGGATACCCGAGACTTG+TGG | 0.615622 | 3_1:+79992122 | Msa0379100:CDS |
| TATGTGATAGCAATAACCAT+GGG | 0.616249 | 3_1:+79992216 | Msa0379100:CDS |
| TCACAGTGAAGTGGGAAGAG+AGG | 0.617386 | 3_1:+79990006 | Msa0379100:five_prime_UTR |
| CATAACCAACAACATTCTGA+AGG | 0.619633 | 3_1:-79990334 | None:intergenic |
| CATGAATCCTGATTCATCAG+AGG | 0.621943 | 3_1:-79991231 | None:intergenic |
| AGAAGAAGCCGCCACCAACA+CGG | 0.624134 | 3_1:-79991751 | None:intergenic |
| CCCGTGGTAGGGATATTGAA+AGG | 0.631908 | 3_1:+79991047 | Msa0379100:CDS |
| GTAGTTGCTGCAACAATGGA+TGG | 0.634037 | 3_1:-79991455 | None:intergenic |
| TAGCTTATTGATAAGCAACA+TGG | 0.638232 | 3_1:+79990055 | Msa0379100:exon |
| TTATGTGATAGCAATAACCA+TGG | 0.640331 | 3_1:+79992215 | Msa0379100:CDS |
| GGATCCATATCCAAAACCCA+TGG | 0.641880 | 3_1:-79992232 | None:intergenic |
| AGTCTCTATCTTGAGTTTAG+GGG | 0.646958 | 3_1:+79992625 | Msa0379100:exon |
| AAATGCTCCACATAGAGGAG+AGG | 0.647420 | 3_1:+79991550 | Msa0379100:CDS |
| CCCAGAAAACCGAGGCCCCG+TGG | 0.651101 | 3_1:+79991031 | Msa0379100:CDS |
| ATTGACAATGATAAACAACA+TGG | 0.655646 | 3_1:+79991652 | Msa0379100:CDS |
| CAAAGTTTCCCAGAAAACCG+AGG | 0.688148 | 3_1:+79991023 | Msa0379100:CDS |
| TTGACAATGATAAACAACAT+GGG | 0.694598 | 3_1:+79991653 | Msa0379100:CDS |
| AGGCATTGCCAATTTCGCGG+AGG | 0.700363 | 3_1:-79992436 | None:intergenic |
| ATACAAGCAGAGATCCAACT+GGG | 0.706369 | 3_1:-79992341 | None:intergenic |
| GGTATAGTAGGAGAGTCCCA+AGG | 0.710600 | 3_1:-79992172 | None:intergenic |
| ATTTGTGGGACACAGATGGG+TGG | 0.741545 | 3_1:+79990103 | Msa0379100:CDS |
| CTTTCAATATCCCTACCACG+GGG | 0.783983 | 3_1:-79991046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACAATTTATATTACA+CGG | + | chr3_1:79990875-79990894 | Msa0379100:intron | 10.0% |
| !!! | TATGTTTTGATACTTTTTTT+TGG | + | chr3_1:79990663-79990682 | Msa0379100:intron | 15.0% |
| !!! | ATGTTTTGATACTTTTTTTT+GGG | + | chr3_1:79990664-79990683 | Msa0379100:intron | 15.0% |
| !!! | AAAAGTATAAAACCATAATT+TGG | - | chr3_1:79990692-79990711 | None:intergenic | 15.0% |
| !!! | TGGTTTTATACTTTTTTTTA+AGG | + | chr3_1:79990697-79990716 | Msa0379100:intron | 15.0% |
| !! | TATGAAATGAAAATAATACA+TGG | - | chr3_1:79990856-79990875 | None:intergenic | 15.0% |
| !! | AATATAATAGGAACTATAAT+TGG | - | chr3_1:79991386-79991405 | None:intergenic | 15.0% |
| !! | AATTATAGTTCCTATTATAT+TGG | + | chr3_1:79991385-79991404 | Msa0379100:CDS | 15.0% |
| !! | GTTATAAAAAAACTAAATGT+CGG | - | chr3_1:79991962-79991981 | None:intergenic | 15.0% |
| !! | AAAATTAAATTTGCAATTGT+TGG | + | chr3_1:79992656-79992675 | Msa0379100:three_prime_UTR | 15.0% |
| !! | AAATTAAATTTGCAATTGTT+GGG | + | chr3_1:79992657-79992676 | Msa0379100:three_prime_UTR | 15.0% |
| !!! | TGTTTTGATACTTTTTTTTG+GGG | + | chr3_1:79990665-79990684 | Msa0379100:intron | 20.0% |
| !! | CAATGTTAACATTTATGTAT+CGG | + | chr3_1:79991703-79991722 | Msa0379100:CDS | 20.0% |
| !! | TCTCAAAATAGAATAAAGAA+GGG | - | chr3_1:79991822-79991841 | None:intergenic | 20.0% |
| !!! | TCAATATTTGAAGATTTTGA+AGG | - | chr3_1:79991909-79991928 | None:intergenic | 20.0% |
| !!! | AATTTTCTGTTCAAAAAATC+CGG | - | chr3_1:79992105-79992124 | None:intergenic | 20.0% |
| !!! | GATTTTTTGAACAGAAAATT+TGG | + | chr3_1:79992105-79992124 | Msa0379100:intron | 20.0% |
| !! | AAGCACAAAATACAAATTTA+TGG | + | chr3_1:79992411-79992430 | Msa0379100:CDS | 20.0% |
| !! | AATTAAATTTGCAATTGTTG+GGG | + | chr3_1:79992658-79992677 | Msa0379100:three_prime_UTR | 20.0% |
| !!! | GACATCTTAGTTTTTTTTGA+AGG | - | chr3_1:79989912-79989931 | None:intergenic | 25.0% |
| ! | AGAAAAGTTGAAGAAATTTG+TGG | + | chr3_1:79990088-79990107 | Msa0379100:CDS | 25.0% |
| ! | GAAAAGTTGAAGAAATTTGT+GGG | + | chr3_1:79990089-79990108 | Msa0379100:CDS | 25.0% |
| !! | TTTTTCTACTAGATGTTGTT+TGG | + | chr3_1:79990505-79990524 | Msa0379100:intron | 25.0% |
| ! | GTAAGTAACTAATCTAGTTA+TGG | - | chr3_1:79990616-79990635 | None:intergenic | 25.0% |
| ! | GAAATGAAAATAATACATGG+TGG | - | chr3_1:79990853-79990872 | None:intergenic | 25.0% |
| !! | GATTGATTAAAAGTATGAAC+AGG | - | chr3_1:79991206-79991225 | None:intergenic | 25.0% |
| ! | CAACAAAATTCCCATTAAAT+AGG | - | chr3_1:79991288-79991307 | None:intergenic | 25.0% |
| ! | GAGAAGAAAACCAATATAAT+AGG | - | chr3_1:79991398-79991417 | None:intergenic | 25.0% |
| ! | ATCTTCAAAAGTAACATGTT+TGG | - | chr3_1:79991516-79991535 | None:intergenic | 25.0% |
| ! | ATTGACAATGATAAACAACA+TGG | + | chr3_1:79991652-79991671 | Msa0379100:CDS | 25.0% |
| ! | TTGACAATGATAAACAACAT+GGG | + | chr3_1:79991653-79991672 | Msa0379100:CDS | 25.0% |
| ! | GTCTCAAAATAGAATAAAGA+AGG | - | chr3_1:79991823-79991842 | None:intergenic | 25.0% |
| !!! | AGTATCAGAGATCTTTTTTT+TGG | - | chr3_1:79991845-79991864 | None:intergenic | 25.0% |
| ! | CATTTCTCAAGTACAAAATA+AGG | + | chr3_1:79991992-79992011 | Msa0379100:intron | 25.0% |
| !! | TTTGTAACAATTTGAGTTTG+AGG | + | chr3_1:79992029-79992048 | Msa0379100:intron | 25.0% |
| ! | ATAGCATTGTAGAATCAAAA+GGG | - | chr3_1:79992060-79992079 | None:intergenic | 25.0% |
| !! | TATTTGGGTTAAAGAACTTT+GGG | + | chr3_1:79992289-79992308 | Msa0379100:CDS | 25.0% |
| ! | ATTAAATTTGCAATTGTTGG+GGG | + | chr3_1:79992659-79992678 | Msa0379100:three_prime_UTR | 25.0% |
| ! | AAATAATACTCAAACCTTGT+GGG | - | chr3_1:79992701-79992720 | None:intergenic | 25.0% |
| TCATGAGTACATTTACATGT+TGG | - | chr3_1:79989948-79989967 | None:intergenic | 30.0% | |
| ATAATATCATCACAGTGAAG+TGG | + | chr3_1:79989997-79990016 | Msa0379100:five_prime_UTR | 30.0% | |
| TAATATCATCACAGTGAAGT+GGG | + | chr3_1:79989998-79990017 | Msa0379100:five_prime_UTR | 30.0% | |
| TAGCTTATTGATAAGCAACA+TGG | + | chr3_1:79990055-79990074 | Msa0379100:exon | 30.0% | |
| CTTTCATATTGAATCAAGTG+TGG | + | chr3_1:79990562-79990581 | Msa0379100:intron | 30.0% | |
| TAACTAATCTAGTTATGGTG+CGG | - | chr3_1:79990611-79990630 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGGGACCAAATTA+TGG | + | chr3_1:79990677-79990696 | Msa0379100:intron | 30.0% |
| !!! | CTATGTTTTTTCATCTTGGT+GGG | + | chr3_1:79990951-79990970 | Msa0379100:CDS | 30.0% |
| TGCTATGATGAAAATCAAAG+AGG | - | chr3_1:79991138-79991157 | None:intergenic | 30.0% | |
| ! | TTGATTTTCATCATAGCAGT+TGG | + | chr3_1:79991140-79991159 | Msa0379100:CDS | 30.0% |
| AAAGTTAAAGAAACCATTGC+TGG | - | chr3_1:79991167-79991186 | None:intergenic | 30.0% | |
| GCTAGAGAATATGTTTGATT+TGG | + | chr3_1:79991307-79991326 | Msa0379100:CDS | 30.0% | |
| ! | TTTTACCTTAACACAAGCAA+TGG | + | chr3_1:79991574-79991593 | Msa0379100:CDS | 30.0% |
| ATTTACCATTGCTTGTGTTA+AGG | - | chr3_1:79991582-79991601 | None:intergenic | 30.0% | |
| !!! | CAATGGTAAATGCTGATTTT+TGG | + | chr3_1:79991591-79991610 | Msa0379100:CDS | 30.0% |
| !! | ATGTTTGTTTCTATCGTCTT+AGG | + | chr3_1:79991617-79991636 | Msa0379100:CDS | 30.0% |
| CATAGCATTGTAGAATCAAA+AGG | - | chr3_1:79992061-79992080 | None:intergenic | 30.0% | |
| TTATGTGATAGCAATAACCA+TGG | + | chr3_1:79992215-79992234 | Msa0379100:CDS | 30.0% | |
| TATGTGATAGCAATAACCAT+GGG | + | chr3_1:79992216-79992235 | Msa0379100:CDS | 30.0% | |
| ! | GTATTTGGGTTAAAGAACTT+TGG | + | chr3_1:79992288-79992307 | Msa0379100:CDS | 30.0% |
| ! | AAATTGGCAATGCCTTATTA+TGG | + | chr3_1:79992444-79992463 | Msa0379100:CDS | 30.0% |
| TTATTTCCGGTACCATAATA+AGG | - | chr3_1:79992459-79992478 | None:intergenic | 30.0% | |
| AAGCAACTCGTTATTATTTC+CGG | - | chr3_1:79992472-79992491 | None:intergenic | 30.0% | |
| !! | ATTTGTTATTCCTTGACTTG+TGG | + | chr3_1:79992507-79992526 | Msa0379100:CDS | 30.0% |
| !!! | AATTTTAGCAGTAGTTTGCT+TGG | + | chr3_1:79992530-79992549 | Msa0379100:CDS | 30.0% |
| TGAGTTTGATCATTGTTCAA+AGG | + | chr3_1:79992565-79992584 | Msa0379100:CDS | 30.0% | |
| !!! | AGGTTTTATTCCCAACTTTA+TGG | + | chr3_1:79992594-79992613 | Msa0379100:CDS | 30.0% |
| TATTCCCAACTTTATGGTAA+TGG | + | chr3_1:79992600-79992619 | Msa0379100:CDS | 30.0% | |
| ATTCCCAACTTTATGGTAAT+GGG | + | chr3_1:79992601-79992620 | Msa0379100:CDS | 30.0% | |
| AAGTCTCTATCTTGAGTTTA+GGG | + | chr3_1:79992624-79992643 | Msa0379100:exon | 30.0% | |
| TTAAATTTGCAATTGTTGGG+GGG | + | chr3_1:79992660-79992679 | Msa0379100:three_prime_UTR | 30.0% | |
| CAAATAATACTCAAACCTTG+TGG | - | chr3_1:79992702-79992721 | None:intergenic | 30.0% | |
| TATCAATAAGCTACCTAGCT+AGG | - | chr3_1:79990048-79990067 | None:intergenic | 35.0% | |
| TTAAGTGTGGCTAAGGATTT+GGG | + | chr3_1:79990239-79990258 | Msa0379100:CDS | 35.0% | |
| CATAACCAACAACATTCTGA+AGG | - | chr3_1:79990337-79990356 | None:intergenic | 35.0% | |
| ! | CTTCAGAATGTTGTTGGTTA+TGG | + | chr3_1:79990335-79990354 | Msa0379100:CDS | 35.0% |
| !! | TTGTTGGTTATGGTCTTGTT+TGG | + | chr3_1:79990345-79990364 | Msa0379100:CDS | 35.0% |
| AGCTGCAAATTATCAATCTC+TGG | - | chr3_1:79990933-79990952 | None:intergenic | 35.0% | |
| !!! | GCAGCTATGTTTTTTCATCT+TGG | + | chr3_1:79990947-79990966 | Msa0379100:intron | 35.0% |
| !!! | GCTATGTTTTTTCATCTTGG+TGG | + | chr3_1:79990950-79990969 | Msa0379100:intron | 35.0% |
| AAATCAAAGAGGCTTGATCA+GGG | - | chr3_1:79991127-79991146 | None:intergenic | 35.0% | |
| AAAATCAAAGAGGCTTGATC+AGG | - | chr3_1:79991128-79991147 | None:intergenic | 35.0% | |
| ATGAATCCTGATTCATCAGA+GGG | - | chr3_1:79991233-79991252 | None:intergenic | 35.0% | |
| TCTCTTAGCTGCCTATTTAA+TGG | + | chr3_1:79991274-79991293 | Msa0379100:CDS | 35.0% | |
| CTCTTAGCTGCCTATTTAAT+GGG | + | chr3_1:79991275-79991294 | Msa0379100:CDS | 35.0% | |
| !! | TAAACCAAAAAGTGCTGATG+AGG | + | chr3_1:79991418-79991437 | Msa0379100:CDS | 35.0% |
| TCACTAATCTCATTGTGCAT+AGG | - | chr3_1:79991482-79991501 | None:intergenic | 35.0% | |
| !!! | CTATGTGGAGCATTTTTTTG+CGG | - | chr3_1:79991545-79991564 | None:intergenic | 35.0% |
| CAAAAAAATGCTCCACATAG+AGG | + | chr3_1:79991545-79991564 | Msa0379100:CDS | 35.0% | |
| GGTCAGATTTGTCAATCTTT+GGG | + | chr3_1:79991674-79991693 | Msa0379100:CDS | 35.0% | |
| ATCAGCATATCCAATTTCCT+AGG | + | chr3_1:79991728-79991747 | Msa0379100:CDS | 35.0% | |
| !! | TCTTCTCTGAAGTTATAGTG+AGG | + | chr3_1:79991768-79991787 | Msa0379100:CDS | 35.0% |
| TTCAAAAAATCCGGCAAAGT+TGG | - | chr3_1:79992096-79992115 | None:intergenic | 35.0% | |
| AACCAAACCTATGGTATAGT+AGG | - | chr3_1:79992187-79992206 | None:intergenic | 35.0% | |
| ! | TACTATACCATAGGTTTGGT+TGG | + | chr3_1:79992186-79992205 | Msa0379100:CDS | 35.0% |
| ! | ATAGCAATAACCATGGGTTT+TGG | + | chr3_1:79992222-79992241 | Msa0379100:CDS | 35.0% |
| !!! | ATAACCATGGGTTTTGGATA+TGG | + | chr3_1:79992228-79992247 | Msa0379100:CDS | 35.0% |
| TGCTAATGCAATTGACCAAT+GGG | - | chr3_1:79992256-79992275 | None:intergenic | 35.0% | |
| !! | CAGCAACTTCAGAAGTATTT+GGG | + | chr3_1:79992274-79992293 | Msa0379100:CDS | 35.0% |
| TGCTAAAATTCCACAAGTCA+AGG | - | chr3_1:79992520-79992539 | None:intergenic | 35.0% | |
| TCATTGTTCAAAGGACTAAG+AGG | + | chr3_1:79992574-79992593 | Msa0379100:CDS | 35.0% | |
| CTTCCCATTACCATAAAGTT+GGG | - | chr3_1:79992607-79992626 | None:intergenic | 35.0% | |
| ACTTCCCATTACCATAAAGT+TGG | - | chr3_1:79992608-79992627 | None:intergenic | 35.0% | |
| GAAGTCTCTATCTTGAGTTT+AGG | + | chr3_1:79992623-79992642 | Msa0379100:exon | 35.0% | |
| AGTCTCTATCTTGAGTTTAG+GGG | + | chr3_1:79992625-79992644 | Msa0379100:exon | 35.0% | |
| TAAATTTGCAATTGTTGGGG+GGG | + | chr3_1:79992661-79992680 | Msa0379100:three_prime_UTR | 35.0% | |
| ATAAGATAAGCAGCCTAGCT+AGG | + | chr3_1:79990032-79990051 | Msa0379100:five_prime_UTR | 40.0% | |
| AGAAATTTGTGGGACACAGA+TGG | + | chr3_1:79990099-79990118 | Msa0379100:CDS | 40.0% | |
| GAAATTTGTGGGACACAGAT+GGG | + | chr3_1:79990100-79990119 | Msa0379100:CDS | 40.0% | |
| ! | ATGTGGGATATGTCATTTGC+AGG | + | chr3_1:79990140-79990159 | Msa0379100:CDS | 40.0% |
| GCAAGTAGCTTTCTTAAGTG+TGG | + | chr3_1:79990226-79990245 | Msa0379100:CDS | 40.0% | |
| AGCTTTCTTAAGTGTGGCTA+AGG | + | chr3_1:79990232-79990251 | Msa0379100:CDS | 40.0% | |
| CTTAAGTGTGGCTAAGGATT+TGG | + | chr3_1:79990238-79990257 | Msa0379100:CDS | 40.0% | |
| ACAAGTATAACTGCCCAAAC+AGG | - | chr3_1:79990308-79990327 | None:intergenic | 40.0% | |
| GTTTGGGCAGTTATACTTGT+TGG | + | chr3_1:79990308-79990327 | Msa0379100:CDS | 40.0% | |
| !! | TTTGGCTTGTTGTAACACAC+AGG | + | chr3_1:79990363-79990382 | Msa0379100:CDS | 40.0% |
| ACTGTCCATAAAGGCAAAGA+AGG | - | chr3_1:79990392-79990411 | None:intergenic | 40.0% | |
| CACACACATACTGTCCATAA+AGG | - | chr3_1:79990401-79990420 | None:intergenic | 40.0% | |
| TCTAGTTATGGTGCGGAAAA+AGG | - | chr3_1:79990604-79990623 | None:intergenic | 40.0% | |
| TTCATCTTGGTGGGACAAAA+TGG | + | chr3_1:79990960-79990979 | Msa0379100:CDS | 40.0% | |
| ATACTACAACACAGCAGCAT+TGG | + | chr3_1:79990989-79991008 | Msa0379100:CDS | 40.0% | |
| TCCTTTCAATATCCCTACCA+CGG | - | chr3_1:79991051-79991070 | None:intergenic | 40.0% | |
| GGGATATTGAAAGGATTCGT+TGG | + | chr3_1:79991056-79991075 | Msa0379100:CDS | 40.0% | |
| !! | AAAGGATTCGTTGGCTTAAG+CGG | + | chr3_1:79991065-79991084 | Msa0379100:CDS | 40.0% |
| CATGAATCCTGATTCATCAG+AGG | - | chr3_1:79991234-79991253 | None:intergenic | 40.0% | |
| ! | TGTTCCTCATCAGCACTTTT+TGG | - | chr3_1:79991425-79991444 | None:intergenic | 40.0% |
| GTAAAATCCTCTCCTCTATG+TGG | - | chr3_1:79991560-79991579 | None:intergenic | 40.0% | |
| ! | GTTTCTATCGTCTTAGGTTG+TGG | + | chr3_1:79991623-79991642 | Msa0379100:CDS | 40.0% |
| GGGTCAGATTTGTCAATCTT+TGG | + | chr3_1:79991673-79991692 | Msa0379100:CDS | 40.0% | |
| ATTCAAGCAGTGATGTCCTT+GGG | + | chr3_1:79992156-79992175 | Msa0379100:CDS | 40.0% | |
| CTCCTACTATACCATAGGTT+TGG | + | chr3_1:79992182-79992201 | Msa0379100:CDS | 40.0% | |
| AACTTGTCCAACCAAACCTA+TGG | - | chr3_1:79992196-79992215 | None:intergenic | 40.0% | |
| !! | GTTTTGGATATGGATCCCAT+TGG | + | chr3_1:79992238-79992257 | Msa0379100:CDS | 40.0% |
| CTGCTAATGCAATTGACCAA+TGG | - | chr3_1:79992257-79992276 | None:intergenic | 40.0% | |
| !! | GCAGCAACTTCAGAAGTATT+TGG | + | chr3_1:79992273-79992292 | Msa0379100:CDS | 40.0% |
| ATACAAGCAGAGATCCAACT+GGG | - | chr3_1:79992344-79992363 | None:intergenic | 40.0% | |
| ATCTCTGCTTGTATCTGGAT+TGG | + | chr3_1:79992350-79992369 | Msa0379100:CDS | 40.0% | |
| !! | ATAAGGCATTGCCAATTTCG+CGG | - | chr3_1:79992442-79992461 | None:intergenic | 40.0% |
| ! | GCAATGCCTTATTATGGTAC+CGG | + | chr3_1:79992450-79992469 | Msa0379100:CDS | 40.0% |
| TGCAAAATGTTTCACCCACA+AGG | + | chr3_1:79992684-79992703 | Msa0379100:three_prime_UTR | 40.0% | |
| TGGTGTTTGTGTGTGCAATG+TGG | + | chr3_1:79990123-79990142 | Msa0379100:CDS | 45.0% | |
| GGTGTTTGTGTGTGCAATGT+GGG | + | chr3_1:79990124-79990143 | Msa0379100:CDS | 45.0% | |
| GCAGGAACAGCTTACATGTT+TGG | + | chr3_1:79990158-79990177 | Msa0379100:CDS | 45.0% | |
| ACCAGTCATAAAGAGCAGCA+TGG | + | chr3_1:79990190-79990209 | Msa0379100:CDS | 45.0% | |
| CCAGTCATAAAGAGCAGCAT+GGG | + | chr3_1:79990191-79990210 | Msa0379100:CDS | 45.0% | |
| AAGGATTTGGGTGACAACGT+TGG | + | chr3_1:79990251-79990270 | Msa0379100:CDS | 45.0% | |
| ! | ACAACGTTGGACTTCTAGCT+GGG | + | chr3_1:79990264-79990283 | Msa0379100:CDS | 45.0% |
| CTGGGTTTATCAGCAAAGCT+TGG | + | chr3_1:79990282-79990301 | Msa0379100:CDS | 45.0% | |
| GGTGTCCTTCAGAATGTTGT+TGG | + | chr3_1:79990329-79990348 | Msa0379100:CDS | 45.0% | |
| GGCTTCCTTCTTTGCCTTTA+TGG | + | chr3_1:79990384-79990403 | Msa0379100:CDS | 45.0% | |
| ! | TTCTGGGAAACTTTGCACAC+AGG | - | chr3_1:79991018-79991037 | None:intergenic | 45.0% |
| CAAAGTTTCCCAGAAAACCG+AGG | + | chr3_1:79991023-79991042 | Msa0379100:CDS | 45.0% | |
| CTTTCAATATCCCTACCACG+GGG | - | chr3_1:79991049-79991068 | None:intergenic | 45.0% | |
| CCTTTCAATATCCCTACCAC+GGG | - | chr3_1:79991050-79991069 | None:intergenic | 45.0% | |
| TCTAGACCCTCTGATGAATC+AGG | + | chr3_1:79991224-79991243 | Msa0379100:CDS | 45.0% | |
| GTAGTTGCTGCAACAATGGA+TGG | - | chr3_1:79991458-79991477 | None:intergenic | 45.0% | |
| AGGTGTAGTTGCTGCAACAA+TGG | - | chr3_1:79991462-79991481 | None:intergenic | 45.0% | |
| AAATGCTCCACATAGAGGAG+AGG | + | chr3_1:79991550-79991569 | Msa0379100:CDS | 45.0% | |
| ! | ATCGTCTTAGGTTGTGGATC+AGG | + | chr3_1:79991629-79991648 | Msa0379100:CDS | 45.0% |
| AAAATCCGGCAAAGTTGGAG+CGG | - | chr3_1:79992091-79992110 | None:intergenic | 45.0% | |
| ATTTGGATACCCGAGACTTG+TGG | + | chr3_1:79992122-79992141 | Msa0379100:CDS | 45.0% | |
| GATTCAAGCAGTGATGTCCT+TGG | + | chr3_1:79992155-79992174 | Msa0379100:CDS | 45.0% | |
| GGACTCTCCTACTATACCAT+AGG | + | chr3_1:79992177-79992196 | Msa0379100:CDS | 45.0% | |
| GGATCCATATCCAAAACCCA+TGG | - | chr3_1:79992235-79992254 | None:intergenic | 45.0% | |
| CTTACAATTGCTAGCCCAGT+TGG | + | chr3_1:79992327-79992346 | Msa0379100:CDS | 45.0% | |
| GATACAAGCAGAGATCCAAC+TGG | - | chr3_1:79992345-79992364 | None:intergenic | 45.0% | |
| GTTGGATCTCTGCTTGTATC+TGG | + | chr3_1:79992345-79992364 | Msa0379100:CDS | 45.0% | |
| AACGAGTTGCTTCTTTGCGA+AGG | + | chr3_1:79992480-79992499 | Msa0379100:CDS | 45.0% | |
| TCACAGTGAAGTGGGAAGAG+AGG | + | chr3_1:79990006-79990025 | Msa0379100:five_prime_UTR | 50.0% | |
| ATTTGTGGGACACAGATGGG+TGG | + | chr3_1:79990103-79990122 | Msa0379100:CDS | 50.0% | |
| CCCATGCTGCTCTTTATGAC+TGG | - | chr3_1:79990194-79990213 | None:intergenic | 50.0% | |
| GACAACGTTGGACTTCTAGC+TGG | + | chr3_1:79990263-79990282 | Msa0379100:CDS | 50.0% | |
| TCAGCAAAGCTTGGCCTGTT+TGG | + | chr3_1:79990291-79990310 | Msa0379100:CDS | 50.0% | |
| CAGCAAAGCTTGGCCTGTTT+GGG | + | chr3_1:79990292-79990311 | Msa0379100:CDS | 50.0% | |
| CCCGTGGTAGGGATATTGAA+AGG | + | chr3_1:79991047-79991066 | Msa0379100:CDS | 50.0% | |
| TTGGCTTAAGCGGCGCAATT+TGG | + | chr3_1:79991075-79991094 | Msa0379100:CDS | 50.0% | |
| CATAGCAGTTGGTCCAGCAA+TGG | + | chr3_1:79991151-79991170 | Msa0379100:CDS | 50.0% | |
| TCCAATTTCCTAGGCCGTGT+TGG | + | chr3_1:79991737-79991756 | Msa0379100:CDS | 50.0% | |
| ACCAACACGGCCTAGGAAAT+TGG | - | chr3_1:79991741-79991760 | None:intergenic | 50.0% | |
| AATTTCCTAGGCCGTGTTGG+TGG | + | chr3_1:79991740-79991759 | Msa0379100:CDS | 50.0% | |
| ATGTTCCGCTCCAACTTTGC+CGG | + | chr3_1:79992083-79992102 | Msa0379100:intron | 50.0% | |
| ATTGCCAACGCCACAAGTCT+CGG | - | chr3_1:79992135-79992154 | None:intergenic | 50.0% | |
| GGTATAGTAGGAGAGTCCCA+AGG | - | chr3_1:79992175-79992194 | None:intergenic | 50.0% | |
| TTATGGAGCCTCCGCGAAAT+TGG | + | chr3_1:79992428-79992447 | Msa0379100:CDS | 50.0% | |
| !! | GTAGTTTGCTTGGTTGCAGC+TGG | + | chr3_1:79992540-79992559 | Msa0379100:CDS | 50.0% |
| TCTTGAGTTTAGGGGAGCAG+AGG | + | chr3_1:79992633-79992652 | Msa0379100:exon | 50.0% | |
| AGAAGAAGCCGCCACCAACA+CGG | - | chr3_1:79991754-79991773 | None:intergenic | 55.0% | |
| ATACCCGAGACTTGTGGCGT+TGG | + | chr3_1:79992128-79992147 | Msa0379100:CDS | 55.0% | |
| TTGCCAACGCCACAAGTCTC+GGG | - | chr3_1:79992134-79992153 | None:intergenic | 55.0% | |
| ! | AGGCATTGCCAATTTCGCGG+AGG | - | chr3_1:79992439-79992458 | None:intergenic | 55.0% |
| AAAACCGAGGCCCCGTGGTA+GGG | + | chr3_1:79991036-79991055 | Msa0379100:CDS | 60.0% | |
| ATATCCCTACCACGGGGCCT+CGG | - | chr3_1:79991043-79991062 | None:intergenic | 60.0% | |
| ! | TTCCTAGGCCGTGTTGGTGG+CGG | + | chr3_1:79991743-79991762 | Msa0379100:CDS | 60.0% |
| ! | CCACGGGGCCTCGGTTTTCT+GGG | - | chr3_1:79991034-79991053 | None:intergenic | 65.0% |
| ! | ACCACGGGGCCTCGGTTTTC+TGG | - | chr3_1:79991035-79991054 | None:intergenic | 65.0% |
| GAAAACCGAGGCCCCGTGGT+AGG | + | chr3_1:79991035-79991054 | Msa0379100:CDS | 65.0% | |
| CCCAGAAAACCGAGGCCCCG+TGG | + | chr3_1:79991031-79991050 | Msa0379100:CDS | 70.0% | |
| AGCCGCCACCAACACGGCCT+AGG | - | chr3_1:79991748-79991767 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79989901 | 79992789 | 79989901 | ID=Msa0379100;Name=Msa0379100 |
| chr3_1 | mRNA | 79989901 | 79992789 | 79989901 | ID=Msa0379100-mRNA-1;Parent=Msa0379100;Name=Msa0379100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=173|1|0.66|1|1|1|3|151|564 |
| chr3_1 | exon | 79989901 | 79990409 | 79989901 | ID=Msa0379100-mRNA-1:exon:19866;Parent=Msa0379100-mRNA-1 |
| chr3_1 | exon | 79990951 | 79991789 | 79990951 | ID=Msa0379100-mRNA-1:exon:19867;Parent=Msa0379100-mRNA-1 |
| chr3_1 | exon | 79992119 | 79992789 | 79992119 | ID=Msa0379100-mRNA-1:exon:19868;Parent=Msa0379100-mRNA-1 |
| chr3_1 | five_prime_UTR | 79989901 | 79990073 | 79989901 | ID=Msa0379100-mRNA-1:five_prime_utr;Parent=Msa0379100-mRNA-1 |
| chr3_1 | CDS | 79990074 | 79990409 | 79990074 | ID=Msa0379100-mRNA-1:cds;Parent=Msa0379100-mRNA-1 |
| chr3_1 | CDS | 79990951 | 79991789 | 79990951 | ID=Msa0379100-mRNA-1:cds;Parent=Msa0379100-mRNA-1 |
| chr3_1 | CDS | 79992119 | 79992638 | 79992119 | ID=Msa0379100-mRNA-1:cds;Parent=Msa0379100-mRNA-1 |
| chr3_1 | three_prime_UTR | 79992639 | 79992789 | 79992639 | ID=Msa0379100-mRNA-1:three_prime_utr;Parent=Msa0379100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
