Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428730 | XP_003602802.1 | 96.707 | 577 | 6 | 1 | 1 | 577 | 1 | 564 | 0.0 | 1122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428730 | sp|F4I9E1|NFD4_ARATH | 24.700 | 583 | 369 | 17 | 14 | 577 | 42 | 573 | 2.90e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428730 | G7J3V8 | 96.707 | 577 | 6 | 1 | 1 | 577 | 1 | 564 | 0.0 | 1122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044180 | Msa0428730 | 0.810505 | 1.114808e-50 | -8.615850e-47 |
| Msa0154270 | Msa0428730 | 0.811416 | 7.079509e-51 | -8.615850e-47 |
| Msa0197030 | Msa0428730 | 0.802880 | 4.547374e-49 | -8.615850e-47 |
| Msa0364780 | Msa0428730 | 0.820473 | 6.733788e-53 | -8.615850e-47 |
| Msa0379100 | Msa0428730 | 0.920865 | 7.439480e-88 | -8.615850e-47 |
| Msa0412190 | Msa0428730 | 0.805349 | 1.393177e-49 | -8.615850e-47 |
| Msa0428730 | Msa0456760 | 0.828972 | 6.676622e-55 | -8.615850e-47 |
| Msa0428730 | Msa0475090 | 0.916497 | 1.658349e-85 | -8.615850e-47 |
| Msa0428730 | Msa0504090 | 0.819054 | 1.420639e-52 | -8.615850e-47 |
| Msa0428730 | Msa0781390 | 0.807029 | 6.170428e-50 | -8.615850e-47 |
| Msa0428730 | Msa1119570 | 0.813069 | 3.084007e-51 | -8.615850e-47 |
| Msa0428730 | Msa1137940 | 0.821113 | 4.798196e-53 | -8.615850e-47 |
| Msa0428730 | Msa1158090 | 0.815171 | 1.059698e-51 | -8.615850e-47 |
| Msa0428730 | Msa1180050 | 0.835890 | 1.289228e-56 | -8.615850e-47 |
| Msa0428730 | Msa1198720 | 0.803705 | 3.068725e-49 | -8.615850e-47 |
| Msa0428730 | Msa1232270 | 0.807262 | 5.507036e-50 | -8.615850e-47 |
| Msa0428730 | Msa1252300 | 0.816454 | 5.485833e-52 | -8.615850e-47 |
| Msa0428730 | Msa1270770 | 0.831334 | 1.770978e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428730 | MtrunA17_Chr3g0132161 | 96.707 | 577 | 6 | 1 | 1 | 577 | 1 | 564 | 0.0 | 1122 |
| Msa0428730 | MtrunA17_Chr7g0225191 | 49.507 | 608 | 245 | 7 | 1 | 572 | 1 | 582 | 0.0 | 546 |
| Msa0428730 | MtrunA17_Chr1g0210274 | 34.783 | 575 | 320 | 12 | 10 | 567 | 21 | 557 | 2.83e-98 | 311 |
| Msa0428730 | MtrunA17_Chr2g0304561 | 32.470 | 579 | 340 | 7 | 16 | 574 | 13 | 560 | 3.06e-97 | 307 |
| Msa0428730 | MtrunA17_Chr1g0210284 | 33.622 | 577 | 324 | 12 | 10 | 567 | 21 | 557 | 5.63e-96 | 305 |
| Msa0428730 | MtrunA17_Chr5g0405621 | 34.676 | 571 | 312 | 12 | 9 | 570 | 7 | 525 | 1.19e-94 | 300 |
| Msa0428730 | MtrunA17_Chr1g0210291 | 33.333 | 567 | 328 | 11 | 15 | 567 | 25 | 555 | 9.95e-93 | 296 |
| Msa0428730 | MtrunA17_Chr4g0064981 | 31.597 | 595 | 349 | 8 | 7 | 574 | 3 | 566 | 2.51e-91 | 292 |
| Msa0428730 | MtrunA17_Chr4g0037301 | 33.808 | 562 | 327 | 8 | 15 | 570 | 15 | 537 | 3.29e-91 | 291 |
| Msa0428730 | MtrunA17_Chr7g0264861 | 33.979 | 568 | 333 | 9 | 15 | 567 | 29 | 569 | 3.49e-90 | 290 |
| Msa0428730 | MtrunA17_Chr1g0171591 | 32.925 | 571 | 335 | 10 | 15 | 567 | 24 | 564 | 5.62e-87 | 281 |
| Msa0428730 | MtrunA17_Chr1g0174101 | 31.443 | 582 | 342 | 11 | 6 | 567 | 11 | 555 | 6.30e-82 | 268 |
| Msa0428730 | MtrunA17_Chr2g0330551 | 31.315 | 578 | 319 | 12 | 14 | 567 | 6 | 529 | 5.40e-78 | 256 |
| Msa0428730 | MtrunA17_Chr5g0442481 | 31.625 | 566 | 326 | 11 | 15 | 569 | 11 | 526 | 2.83e-71 | 238 |
| Msa0428730 | MtrunA17_Chr7g0251871 | 25.939 | 586 | 362 | 13 | 13 | 566 | 5 | 550 | 2.16e-39 | 152 |
| Msa0428730 | MtrunA17_Chr2g0333371 | 25.000 | 360 | 187 | 6 | 231 | 574 | 4 | 296 | 1.44e-31 | 124 |
| Msa0428730 | MtrunA17_Chr3g0106801 | 24.242 | 561 | 363 | 11 | 15 | 567 | 7 | 513 | 1.04e-30 | 125 |
| Msa0428730 | MtrunA17_Chr5g0408921 | 24.074 | 594 | 369 | 15 | 14 | 566 | 6 | 558 | 1.19e-30 | 126 |
| Msa0428730 | MtrunA17_Chr3g0106821 | 22.646 | 393 | 279 | 5 | 15 | 405 | 7 | 376 | 4.30e-23 | 101 |
| Msa0428730 | MtrunA17_Chr8g0369621 | 28.144 | 167 | 118 | 2 | 14 | 180 | 47 | 211 | 2.75e-15 | 79.0 |
| Msa0428730 | MtrunA17_Chr8g0369621 | 26.038 | 265 | 154 | 6 | 311 | 569 | 374 | 602 | 1.40e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428730 | AT5G50630.1 | 49.123 | 570 | 245 | 9 | 5 | 570 | 6 | 534 | 0.0 | 543 |
| Msa0428730 | AT5G50520.1 | 49.123 | 570 | 245 | 9 | 5 | 570 | 6 | 534 | 0.0 | 543 |
| Msa0428730 | AT3G01930.2 | 49.109 | 617 | 234 | 9 | 3 | 575 | 4 | 584 | 0.0 | 534 |
| Msa0428730 | AT5G14120.1 | 47.049 | 610 | 252 | 7 | 3 | 575 | 4 | 579 | 2.51e-180 | 521 |
| Msa0428730 | AT3G01930.3 | 51.826 | 438 | 161 | 6 | 3 | 397 | 4 | 434 | 6.34e-137 | 405 |
| Msa0428730 | AT3G01930.1 | 46.351 | 507 | 192 | 9 | 113 | 575 | 1 | 471 | 6.18e-131 | 391 |
| Msa0428730 | AT2G39210.1 | 35.456 | 581 | 309 | 12 | 15 | 570 | 21 | 560 | 1.36e-101 | 320 |
| Msa0428730 | AT2G28120.1 | 34.331 | 568 | 329 | 10 | 11 | 567 | 13 | 547 | 5.77e-96 | 305 |
| Msa0428730 | AT4G34950.1 | 33.051 | 590 | 320 | 14 | 15 | 575 | 16 | 559 | 2.26e-94 | 300 |
| Msa0428730 | AT1G80530.1 | 32.095 | 592 | 335 | 9 | 7 | 574 | 3 | 551 | 5.21e-89 | 286 |
| Msa0428730 | AT2G16660.1 | 33.391 | 581 | 321 | 12 | 5 | 570 | 4 | 533 | 7.08e-88 | 282 |
| Msa0428730 | AT1G74780.1 | 32.007 | 578 | 311 | 13 | 15 | 569 | 7 | 525 | 1.65e-76 | 252 |
| Msa0428730 | AT2G34350.1 | 30.000 | 580 | 323 | 10 | 10 | 569 | 2 | 518 | 5.77e-76 | 251 |
| Msa0428730 | AT2G34350.2 | 30.000 | 580 | 323 | 10 | 10 | 569 | 2 | 518 | 5.77e-76 | 251 |
| Msa0428730 | AT1G18940.1 | 30.609 | 575 | 316 | 13 | 15 | 570 | 9 | 519 | 3.43e-71 | 238 |
| Msa0428730 | AT2G34355.1 | 28.670 | 579 | 326 | 14 | 12 | 569 | 4 | 516 | 9.62e-68 | 229 |
| Msa0428730 | AT2G16660.2 | 34.739 | 403 | 234 | 7 | 4 | 392 | 3 | 390 | 3.84e-65 | 218 |
| Msa0428730 | AT4G19450.1 | 27.273 | 594 | 353 | 18 | 14 | 568 | 6 | 559 | 3.43e-41 | 157 |
| Msa0428730 | AT2G34355.2 | 28.074 | 431 | 231 | 13 | 152 | 569 | 2 | 366 | 5.57e-38 | 144 |
| Msa0428730 | AT3G01630.1 | 24.870 | 579 | 364 | 15 | 14 | 572 | 22 | 549 | 1.19e-34 | 138 |
| Msa0428730 | AT3G01630.2 | 25.043 | 579 | 363 | 15 | 14 | 572 | 40 | 567 | 1.20e-34 | 138 |
| Msa0428730 | AT1G31470.1 | 24.700 | 583 | 369 | 17 | 14 | 577 | 42 | 573 | 2.95e-34 | 137 |
| Msa0428730 | AT4G19450.2 | 27.228 | 404 | 253 | 12 | 14 | 381 | 6 | 404 | 1.02e-32 | 130 |
| Msa0428730 | AT2G30300.1 | 24.361 | 587 | 314 | 14 | 16 | 568 | 8 | 498 | 1.94e-27 | 116 |
| Msa0428730 | AT5G45275.1 | 31.429 | 175 | 119 | 1 | 14 | 188 | 6 | 179 | 2.99e-20 | 95.1 |
| Msa0428730 | AT5G45275.1 | 25.723 | 311 | 176 | 11 | 268 | 568 | 292 | 557 | 2.58e-14 | 76.3 |
Find 141 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCCTTCTTTGCCTTTA+TGG | 0.127424 | 3_2:+79670625 | Msa0428730:CDS |
| GCAGCAACTTCAGAAGTATT+TGG | 0.160612 | 3_2:+79672507 | Msa0428730:CDS |
| CTTAAGTGTGGCTAAGGATT+TGG | 0.185948 | 3_2:+79670479 | Msa0428730:CDS |
| GTTGGATCTCTGCTTGTATC+TGG | 0.224970 | 3_2:+79672579 | Msa0428730:CDS |
| AAGCAACTCGTTATTATTTC+CGG | 0.233736 | 3_2:-79672703 | None:intergenic |
| ATGCACAGAATACAAATTTA+TGG | 0.236670 | 3_2:+79672645 | Msa0428730:CDS |
| ATGTTTGTTTCTATCGTCTT+AGG | 0.238459 | 3_2:+79671850 | Msa0428730:CDS |
| ACCAACACGGCCTAGGAAAT+TGG | 0.240141 | 3_2:-79671971 | None:intergenic |
| GGGTCAGATTTGTCAATCTT+TGG | 0.262023 | 3_2:+79671906 | Msa0428730:CDS |
| CTTCAGAATGTTGTTGGTTA+TGG | 0.262768 | 3_2:+79670576 | Msa0428730:CDS |
| TTGGCTTAAGCGGTGCAATT+TGG | 0.263631 | 3_2:+79671308 | Msa0428730:CDS |
| TTATGGAGCCTCCGCGAAAT+TGG | 0.264431 | 3_2:+79672662 | Msa0428730:CDS |
| TTCATCTTGGTGGGACAAAA+TGG | 0.273357 | 3_2:+79671193 | Msa0428730:CDS |
| AATTATAGTTCCTATTATAT+TGG | 0.276451 | 3_2:+79671618 | Msa0428730:CDS |
| CTCTTAGCTGCCTATTTAAT+GGG | 0.282295 | 3_2:+79671508 | Msa0428730:CDS |
| TTATTTCCGGTACCATAATA+AGG | 0.284663 | 3_2:-79672690 | None:intergenic |
| CAACAAAACTCCCATTAAAT+AGG | 0.301844 | 3_2:-79671518 | None:intergenic |
| TCAGCAAAGCTTGGCCTGTT+TGG | 0.301872 | 3_2:+79670532 | Msa0428730:CDS |
| AAATTGGCAATGCCTTATTA+TGG | 0.304344 | 3_2:+79672678 | Msa0428730:CDS |
| TCTCTTAGCTGCCTATTTAA+TGG | 0.306613 | 3_2:+79671507 | Msa0428730:CDS |
| GAGAAGAAAACCAATATAAT+AGG | 0.316323 | 3_2:-79671628 | None:intergenic |
| ATAGCAATAACCATGGGTTT+TGG | 0.320887 | 3_2:+79672456 | Msa0428730:CDS |
| TTAAGTGTGGCTAAGGATTT+GGG | 0.328079 | 3_2:+79670480 | Msa0428730:CDS |
| CAGCAAAGCTTGGCCTGTTT+GGG | 0.333110 | 3_2:+79670533 | Msa0428730:CDS |
| CAGCAACTTCAGAAGTATTT+GGG | 0.333578 | 3_2:+79672508 | Msa0428730:CDS |
| ATTCCCAACTTTATGGTAAT+GGG | 0.335479 | 3_2:+79672835 | Msa0428730:CDS |
| AATATAATAGGAACTATAAT+TGG | 0.335838 | 3_2:-79671616 | None:intergenic |
| GCTAGAGAATATGTTTGATT+TGG | 0.340300 | 3_2:+79671540 | Msa0428730:CDS |
| TATTCCCAACTTTATGGTAA+TGG | 0.342343 | 3_2:+79672834 | Msa0428730:CDS |
| ATCTTCAAAAGTAACATGTT+TGG | 0.359540 | 3_2:-79671746 | None:intergenic |
| ATGTTCAGCTCCAACTTTGC+CGG | 0.364300 | 3_2:+79672317 | Msa0428730:intron |
| GGTCAGATTTGTCAATCTTT+GGG | 0.365348 | 3_2:+79671907 | Msa0428730:CDS |
| GTTTGGGCAGTTATACTTGT+TGG | 0.387389 | 3_2:+79670549 | Msa0428730:CDS |
| GTTTCTATCGTCTTAGGTTG+TGG | 0.394738 | 3_2:+79671856 | Msa0428730:CDS |
| AAAATCAAAGAGGCTTGATC+AGG | 0.403361 | 3_2:-79671358 | None:intergenic |
| TATTTGGGTTAAAGAACTTT+GGG | 0.404022 | 3_2:+79672523 | Msa0428730:CDS |
| GCAGGAACAGCTTACATGTT+TGG | 0.404543 | 3_2:+79670399 | Msa0428730:CDS |
| ATCGTCTTAGGTTGTGGATC+AGG | 0.406553 | 3_2:+79671862 | Msa0428730:CDS |
| GTAGTTTGCTTGGTTGCAGC+TGG | 0.409953 | 3_2:+79672774 | Msa0428730:CDS |
| TCTAGACCCTCTGATGAATC+AGG | 0.413206 | 3_2:+79671457 | Msa0428730:CDS |
| CACATACATACCGTCCATAA+AGG | 0.413324 | 3_2:-79670639 | None:intergenic |
| ATTTACCATTGCTTGTGTTA+AGG | 0.413356 | 3_2:-79671812 | None:intergenic |
| TTGTTGGTTATGGTCTTGTT+TGG | 0.418799 | 3_2:+79670586 | Msa0428730:CDS |
| TACTATACCATAGGTTTGGT+TGG | 0.429856 | 3_2:+79672420 | Msa0428730:CDS |
| GACAACGTTGGACTTCTAGC+TGG | 0.436727 | 3_2:+79670504 | Msa0428730:CDS |
| AGCTTTCTTAAGTGTGGCTA+AGG | 0.438962 | 3_2:+79670473 | Msa0428730:CDS |
| GTATTTGGGTTAAAGAACTT+TGG | 0.439987 | 3_2:+79672522 | Msa0428730:CDS |
| AAAGTTAAAGAAACCATTGC+TGG | 0.440366 | 3_2:-79671397 | None:intergenic |
| GGTGTTTGTGTGTGCAATGT+GGG | 0.443279 | 3_2:+79670365 | Msa0428730:CDS |
| CTCCTACTATACCATAGGTT+TGG | 0.445658 | 3_2:+79672416 | Msa0428730:CDS |
| ACTTCCCATTACCATAAAGT+TGG | 0.446345 | 3_2:-79672839 | None:intergenic |
| TCCTTCTTTGCCTTTATGGA+CGG | 0.447825 | 3_2:+79670629 | Msa0428730:CDS |
| ATTGCCAACGCCACAAGTCT+CGG | 0.458481 | 3_2:-79672366 | None:intergenic |
| AGAAAAGTTGAAGAAATTTG+TGG | 0.464182 | 3_2:+79670329 | Msa0428730:CDS |
| CTTCCCATTACCATAAAGTT+GGG | 0.464254 | 3_2:-79672838 | None:intergenic |
| GGTGTCCTTCAGAATGTTGT+TGG | 0.468337 | 3_2:+79670570 | Msa0428730:CDS |
| ATGTGGGATATGTCATTTGC+AGG | 0.471152 | 3_2:+79670381 | Msa0428730:CDS |
| ATATCCCTACCACGGGGCCT+CGG | 0.474408 | 3_2:-79671273 | None:intergenic |
| ATCTCTGCTTGTATCTGGAT+TGG | 0.476420 | 3_2:+79672584 | Msa0428730:CDS |
| CTTACAATTGCTAGCCCAGT+TGG | 0.478016 | 3_2:+79672561 | Msa0428730:CDS |
| CAATGTTAACATTTATGTAT+CGG | 0.479065 | 3_2:+79671936 | Msa0428730:CDS |
| TTCCTAGGCCGTGTTGGTGG+CGG | 0.479191 | 3_2:+79671976 | Msa0428730:CDS |
| ACAAGTATAACTGCCCAAAC+AGG | 0.483574 | 3_2:-79670546 | None:intergenic |
| ATTTGTTATTCCTTGACTTG+TGG | 0.484082 | 3_2:+79672741 | Msa0428730:CDS |
| GAAAACCGAGGCCCCGTGGT+AGG | 0.484749 | 3_2:+79671268 | Msa0428730:CDS |
| GAAAAGTTGAAGAAATTTGT+GGG | 0.485863 | 3_2:+79670330 | Msa0428730:CDS |
| GATTGATTAAAAGTATGAAC+AGG | 0.486679 | 3_2:-79671436 | None:intergenic |
| TGCTAATGCAATTGACCAAT+GGG | 0.487067 | 3_2:-79672487 | None:intergenic |
| GCAATGCCTTATTATGGTAC+CGG | 0.495270 | 3_2:+79672684 | Msa0428730:CDS |
| TCATTGTTCAAAGGACTAAG+AGG | 0.496212 | 3_2:+79672808 | Msa0428730:CDS |
| ATAAGATAAGCAGCCTAGCT+AGG | 0.501618 | 3_2:+79670273 | Msa0428730:five_prime_UTR |
| TATCAATAAGCTACCTAGCT+AGG | 0.502972 | 3_2:-79670286 | None:intergenic |
| ATTCAAGCAGTGATGTCCTT+GGG | 0.509232 | 3_2:+79672390 | Msa0428730:CDS |
| TCCAATTTCCTAGGCCGTGT+TGG | 0.509421 | 3_2:+79671970 | Msa0428730:CDS |
| GATACAAGCAGAGATCCAAC+TGG | 0.510888 | 3_2:-79672576 | None:intergenic |
| GATTCAAGCAGTGATGTCCT+TGG | 0.514626 | 3_2:+79672389 | Msa0428730:CDS |
| GGGATATTGAAAGGATTCGT+TGG | 0.515288 | 3_2:+79671289 | Msa0428730:CDS |
| GATGAAAACAATCAAAATAA+CGG | 0.515420 | 3_2:-79671587 | None:intergenic |
| ATACTACAACACAGCAGCAT+TGG | 0.515438 | 3_2:+79671222 | Msa0428730:CDS |
| ACCGTCCATAAAGGCAAAGA+AGG | 0.516260 | 3_2:-79670630 | None:intergenic |
| ACAACGTTGGACTTCTAGCT+GGG | 0.518106 | 3_2:+79670505 | Msa0428730:CDS |
| AACTTGTCCAACCAAACCTA+TGG | 0.519795 | 3_2:-79672427 | None:intergenic |
| TGAGTTTGATCATTGTTCAA+AGG | 0.522810 | 3_2:+79672799 | Msa0428730:CDS |
| CTGGGTTTATCAGCAAAGCT+TGG | 0.525007 | 3_2:+79670523 | Msa0428730:CDS |
| TTGCCAACGCCACAAGTCTC+GGG | 0.527950 | 3_2:-79672365 | None:intergenic |
| AACGAGTTGCTTCTTTGCGA+AGG | 0.528487 | 3_2:+79672714 | Msa0428730:CDS |
| ATCAGCATATCCAATTTCCT+AGG | 0.530608 | 3_2:+79671961 | Msa0428730:CDS |
| AGGTGTAGTTGCTGCAACAA+TGG | 0.531721 | 3_2:-79671692 | None:intergenic |
| TGCTAAAATTCCACAAGTCA+AGG | 0.533451 | 3_2:-79672751 | None:intergenic |
| AACCAAACCTATGGTATAGT+AGG | 0.541846 | 3_2:-79672418 | None:intergenic |
| TCATGAGTACATTTACATGT+TGG | 0.542028 | 3_2:-79670186 | None:intergenic |
| CCTTTCAATATCCCTACCAC+GGG | 0.542176 | 3_2:-79671280 | None:intergenic |
| CCCATGCTGCTCTTTATGAC+TGG | 0.544672 | 3_2:-79670432 | None:intergenic |
| AAAGGATTCGTTGGCTTAAG+CGG | 0.548183 | 3_2:+79671298 | Msa0428730:CDS |
| GGACTCTCCTACTATACCAT+AGG | 0.548639 | 3_2:+79672411 | Msa0428730:CDS |
| TGGTGTTTGTGTGTGCAATG+TGG | 0.552532 | 3_2:+79670364 | Msa0428730:CDS |
| AATTTCCTAGGCCGTGTTGG+TGG | 0.553242 | 3_2:+79671973 | Msa0428730:CDS |
| AGAAATTTGTGGGACACAGA+TGG | 0.556960 | 3_2:+79670340 | Msa0428730:CDS |
| ATAAGGCATTGCCAATTTCG+CGG | 0.557317 | 3_2:-79672673 | None:intergenic |
| AAAACCGAGGCCCCGTGGTA+GGG | 0.558213 | 3_2:+79671269 | Msa0428730:CDS |
| GTAAAATCCTCTCCTCTATG+TGG | 0.564577 | 3_2:-79671790 | None:intergenic |
| CCAGTCATAAAGAGCAGCAT+GGG | 0.570468 | 3_2:+79670432 | Msa0428730:CDS |
| CATAGCAGTTGGTCCAGCAA+TGG | 0.571113 | 3_2:+79671384 | Msa0428730:CDS |
| CTGCTAATGCAATTGACCAA+TGG | 0.572591 | 3_2:-79672488 | None:intergenic |
| ATACCCGAGACTTGTGGCGT+TGG | 0.574402 | 3_2:+79672362 | Msa0428730:CDS |
| ATGAATCCTGATTCATCAGA+GGG | 0.575878 | 3_2:-79671463 | None:intergenic |
| GCAAGTAGCTTTCTTAAGTG+TGG | 0.579267 | 3_2:+79670467 | Msa0428730:CDS |
| AGCCGCCACCAACACGGCCT+AGG | 0.579659 | 3_2:-79671978 | None:intergenic |
| TAATATCATCACAGTGAAGT+GGG | 0.583302 | 3_2:+79670239 | Msa0428730:five_prime_UTR |
| ATAATATCATCACAGTGAAG+TGG | 0.587032 | 3_2:+79670238 | Msa0428730:five_prime_UTR |
| TGCTATGATGAAAATCAAAG+AGG | 0.588102 | 3_2:-79671368 | None:intergenic |
| TTCTGGGAAACTTTGCACAC+AGG | 0.588869 | 3_2:-79671248 | None:intergenic |
| GAAATTTGTGGGACACAGAT+GGG | 0.596755 | 3_2:+79670341 | Msa0428730:CDS |
| TTTGGCTTGTTGTAACACAC+AGG | 0.597277 | 3_2:+79670604 | Msa0428730:CDS |
| TCACTAATCTCATTGTGCAT+AGG | 0.602939 | 3_2:-79671712 | None:intergenic |
| TCCTTTCAATATCCCTACCA+CGG | 0.603422 | 3_2:-79671281 | None:intergenic |
| ACCAGTCATAAAGAGCAGCA+TGG | 0.605771 | 3_2:+79670431 | Msa0428730:CDS |
| AAGGATTTGGGTGACAACGT+TGG | 0.607484 | 3_2:+79670492 | Msa0428730:CDS |
| AAATCAAAGAGGCTTGATCA+GGG | 0.611738 | 3_2:-79671357 | None:intergenic |
| ATTTGGATACCCGAGACTTG+TGG | 0.615622 | 3_2:+79672356 | Msa0428730:CDS |
| TATGTGATAGCAATAACCAT+GGG | 0.616249 | 3_2:+79672450 | Msa0428730:CDS |
| TCACAGTGAAGTGGGAAGAG+AGG | 0.617386 | 3_2:+79670247 | Msa0428730:five_prime_UTR |
| CATAACCAACAACATTCTGA+AGG | 0.619633 | 3_2:-79670575 | None:intergenic |
| CATGAATCCTGATTCATCAG+AGG | 0.621943 | 3_2:-79671464 | None:intergenic |
| CCCGTGGTAGGGATATTGAA+AGG | 0.631908 | 3_2:+79671280 | Msa0428730:CDS |
| GTAGTTGCTGCAACAATGGA+TGG | 0.634037 | 3_2:-79671688 | None:intergenic |
| AGAAGTAGCCGCCACCAACA+CGG | 0.636827 | 3_2:-79671984 | None:intergenic |
| TAGCTTATTGATAAGCAACA+TGG | 0.638232 | 3_2:+79670296 | Msa0428730:exon |
| TTATGTGATAGCAATAACCA+TGG | 0.640331 | 3_2:+79672449 | Msa0428730:CDS |
| GGATCCATATCCAAAACCCA+TGG | 0.641880 | 3_2:-79672466 | None:intergenic |
| AAATGCTCCACATAGAGGAG+AGG | 0.647420 | 3_2:+79671783 | Msa0428730:CDS |
| CCCAGAAAACCGAGGCCCCG+TGG | 0.651101 | 3_2:+79671264 | Msa0428730:CDS |
| ATTGACAATGATAAACAACA+TGG | 0.655646 | 3_2:+79671885 | Msa0428730:CDS |
| ACTTCTCTGAAGTTATAGTG+AGG | 0.664718 | 3_2:+79672001 | Msa0428730:CDS |
| CAAAGTTTCCCAGAAAACCG+AGG | 0.688148 | 3_2:+79671256 | Msa0428730:CDS |
| TTGACAATGATAAACAACAT+GGG | 0.694598 | 3_2:+79671886 | Msa0428730:CDS |
| AGGCATTGCCAATTTCGCGG+AGG | 0.700363 | 3_2:-79672670 | None:intergenic |
| ATACAAGCAGAGATCCAACT+GGG | 0.706369 | 3_2:-79672575 | None:intergenic |
| GGTATAGTAGGAGAGTCCCA+AGG | 0.710600 | 3_2:-79672406 | None:intergenic |
| ATTTGTGGGACACAGATGGG+TGG | 0.741545 | 3_2:+79670344 | Msa0428730:CDS |
| CTTTCAATATCCCTACCACG+GGG | 0.783983 | 3_2:-79671279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAACAATTTATATTACA+CGG | + | chr3_2:79671108-79671127 | Msa0428730:intron | 10.0% |
| !! | TTATAAAAAAACTTAAATGT+CGG | - | chr3_2:79672195-79672214 | None:intergenic | 10.0% |
| !!! | TATGTTTTGATACTTTTTTT+TGG | + | chr3_2:79670895-79670914 | Msa0428730:intron | 15.0% |
| !!! | ATGTTTTGATACTTTTTTTT+GGG | + | chr3_2:79670896-79670915 | Msa0428730:intron | 15.0% |
| !!! | AAAAGTATAAAACCATAATT+TGG | - | chr3_2:79670924-79670943 | None:intergenic | 15.0% |
| !!! | GGTTTTATACTTTTTTTTTA+AGG | + | chr3_2:79670930-79670949 | Msa0428730:intron | 15.0% |
| !! | TATGAAATGAAAATAATACA+TGG | - | chr3_2:79671089-79671108 | None:intergenic | 15.0% |
| !! | AATATAATAGGAACTATAAT+TGG | - | chr3_2:79671619-79671638 | None:intergenic | 15.0% |
| !! | AATTATAGTTCCTATTATAT+TGG | + | chr3_2:79671618-79671637 | Msa0428730:CDS | 15.0% |
| !!! | TGTTTTGATACTTTTTTTTG+GGG | + | chr3_2:79670897-79670916 | Msa0428730:intron | 20.0% |
| !! | GATGAAAACAATCAAAATAA+CGG | - | chr3_2:79671590-79671609 | None:intergenic | 20.0% |
| !! | CAATGTTAACATTTATGTAT+CGG | + | chr3_2:79671936-79671955 | Msa0428730:CDS | 20.0% |
| !! | TCTCAAAATAGAATAAAGAA+GGG | - | chr3_2:79672055-79672074 | None:intergenic | 20.0% |
| !!! | TCAATATTTGAAGATTTTGA+AGG | - | chr3_2:79672142-79672161 | None:intergenic | 20.0% |
| !!! | AATTTTCTGTTCAAAAAATC+CGG | - | chr3_2:79672339-79672358 | None:intergenic | 20.0% |
| !!! | GATTTTTTGAACAGAAAATT+TGG | + | chr3_2:79672339-79672358 | Msa0428730:CDS | 20.0% |
| ! | AGAAAAGTTGAAGAAATTTG+TGG | + | chr3_2:79670329-79670348 | Msa0428730:CDS | 25.0% |
| ! | GAAAAGTTGAAGAAATTTGT+GGG | + | chr3_2:79670330-79670349 | Msa0428730:CDS | 25.0% |
| ! | GAAATGAAAATAATACATGG+TGG | - | chr3_2:79671086-79671105 | None:intergenic | 25.0% |
| !! | GATTGATTAAAAGTATGAAC+AGG | - | chr3_2:79671439-79671458 | None:intergenic | 25.0% |
| ! | GAGAAGAAAACCAATATAAT+AGG | - | chr3_2:79671631-79671650 | None:intergenic | 25.0% |
| ! | ATCTTCAAAAGTAACATGTT+TGG | - | chr3_2:79671749-79671768 | None:intergenic | 25.0% |
| ! | ATTGACAATGATAAACAACA+TGG | + | chr3_2:79671885-79671904 | Msa0428730:CDS | 25.0% |
| ! | TTGACAATGATAAACAACAT+GGG | + | chr3_2:79671886-79671905 | Msa0428730:CDS | 25.0% |
| ! | GTCTCAAAATAGAATAAAGA+AGG | - | chr3_2:79672056-79672075 | None:intergenic | 25.0% |
| !!! | AGTATCAGAGATCTTTTTTT+TGG | - | chr3_2:79672078-79672097 | None:intergenic | 25.0% |
| ! | CATTTCTCAAGTACAAAATA+AGG | + | chr3_2:79672226-79672245 | Msa0428730:intron | 25.0% |
| !! | TTTGTAACAATTTGAGTTTG+AGG | + | chr3_2:79672263-79672282 | Msa0428730:intron | 25.0% |
| ! | ATAGCATTGTAGAATCAAAA+GGG | - | chr3_2:79672294-79672313 | None:intergenic | 25.0% |
| !! | TATTTGGGTTAAAGAACTTT+GGG | + | chr3_2:79672523-79672542 | Msa0428730:CDS | 25.0% |
| ! | ATGCACAGAATACAAATTTA+TGG | + | chr3_2:79672645-79672664 | Msa0428730:CDS | 25.0% |
| TCATGAGTACATTTACATGT+TGG | - | chr3_2:79670189-79670208 | None:intergenic | 30.0% | |
| ATAATATCATCACAGTGAAG+TGG | + | chr3_2:79670238-79670257 | Msa0428730:five_prime_UTR | 30.0% | |
| TAATATCATCACAGTGAAGT+GGG | + | chr3_2:79670239-79670258 | Msa0428730:five_prime_UTR | 30.0% | |
| TAGCTTATTGATAAGCAACA+TGG | + | chr3_2:79670296-79670315 | Msa0428730:exon | 30.0% | |
| ! | TTCTACTAGATGTTGTTGTT+TGG | + | chr3_2:79670737-79670756 | Msa0428730:intron | 30.0% |
| CTTTCATATTGAATCAAGTG+TGG | + | chr3_2:79670794-79670813 | Msa0428730:intron | 30.0% | |
| TAACTAATCTAGTTATGGTG+AGG | - | chr3_2:79670843-79670862 | None:intergenic | 30.0% | |
| GCAAGTAACTAATCTAGTTA+TGG | - | chr3_2:79670848-79670867 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGGGGACCAAATTA+TGG | + | chr3_2:79670909-79670928 | Msa0428730:intron | 30.0% |
| !!! | CTATGTTTTTTCATCTTGGT+GGG | + | chr3_2:79671184-79671203 | Msa0428730:CDS | 30.0% |
| TGCTATGATGAAAATCAAAG+AGG | - | chr3_2:79671371-79671390 | None:intergenic | 30.0% | |
| ! | TTGATTTTCATCATAGCAGT+TGG | + | chr3_2:79671373-79671392 | Msa0428730:CDS | 30.0% |
| AAAGTTAAAGAAACCATTGC+TGG | - | chr3_2:79671400-79671419 | None:intergenic | 30.0% | |
| CAACAAAACTCCCATTAAAT+AGG | - | chr3_2:79671521-79671540 | None:intergenic | 30.0% | |
| GCTAGAGAATATGTTTGATT+TGG | + | chr3_2:79671540-79671559 | Msa0428730:CDS | 30.0% | |
| ! | TTTTACCTTAACACAAGCAA+TGG | + | chr3_2:79671807-79671826 | Msa0428730:CDS | 30.0% |
| ATTTACCATTGCTTGTGTTA+AGG | - | chr3_2:79671815-79671834 | None:intergenic | 30.0% | |
| !!! | CAATGGTAAATGCTGATTTT+TGG | + | chr3_2:79671824-79671843 | Msa0428730:CDS | 30.0% |
| !! | ATGTTTGTTTCTATCGTCTT+AGG | + | chr3_2:79671850-79671869 | Msa0428730:CDS | 30.0% |
| CATAGCATTGTAGAATCAAA+AGG | - | chr3_2:79672295-79672314 | None:intergenic | 30.0% | |
| TTATGTGATAGCAATAACCA+TGG | + | chr3_2:79672449-79672468 | Msa0428730:CDS | 30.0% | |
| TATGTGATAGCAATAACCAT+GGG | + | chr3_2:79672450-79672469 | Msa0428730:CDS | 30.0% | |
| ! | GTATTTGGGTTAAAGAACTT+TGG | + | chr3_2:79672522-79672541 | Msa0428730:CDS | 30.0% |
| ! | AAATTGGCAATGCCTTATTA+TGG | + | chr3_2:79672678-79672697 | Msa0428730:CDS | 30.0% |
| TTATTTCCGGTACCATAATA+AGG | - | chr3_2:79672693-79672712 | None:intergenic | 30.0% | |
| AAGCAACTCGTTATTATTTC+CGG | - | chr3_2:79672706-79672725 | None:intergenic | 30.0% | |
| !! | ATTTGTTATTCCTTGACTTG+TGG | + | chr3_2:79672741-79672760 | Msa0428730:CDS | 30.0% |
| !!! | AATTTTAGCAGTAGTTTGCT+TGG | + | chr3_2:79672764-79672783 | Msa0428730:CDS | 30.0% |
| TGAGTTTGATCATTGTTCAA+AGG | + | chr3_2:79672799-79672818 | Msa0428730:CDS | 30.0% | |
| !!! | AGGTTTTATTCCCAACTTTA+TGG | + | chr3_2:79672828-79672847 | Msa0428730:CDS | 30.0% |
| TATTCCCAACTTTATGGTAA+TGG | + | chr3_2:79672834-79672853 | Msa0428730:CDS | 30.0% | |
| ATTCCCAACTTTATGGTAAT+GGG | + | chr3_2:79672835-79672854 | Msa0428730:CDS | 30.0% | |
| TATCAATAAGCTACCTAGCT+AGG | - | chr3_2:79670289-79670308 | None:intergenic | 35.0% | |
| TTAAGTGTGGCTAAGGATTT+GGG | + | chr3_2:79670480-79670499 | Msa0428730:CDS | 35.0% | |
| CATAACCAACAACATTCTGA+AGG | - | chr3_2:79670578-79670597 | None:intergenic | 35.0% | |
| ! | CTTCAGAATGTTGTTGGTTA+TGG | + | chr3_2:79670576-79670595 | Msa0428730:CDS | 35.0% |
| !! | TTGTTGGTTATGGTCTTGTT+TGG | + | chr3_2:79670586-79670605 | Msa0428730:CDS | 35.0% |
| TCTAGTTATGGTGAGGAAAA+AGG | - | chr3_2:79670836-79670855 | None:intergenic | 35.0% | |
| AGCTGCAAATTATCAATCTC+TGG | - | chr3_2:79671166-79671185 | None:intergenic | 35.0% | |
| !!! | GCAGCTATGTTTTTTCATCT+TGG | + | chr3_2:79671180-79671199 | Msa0428730:intron | 35.0% |
| !!! | GCTATGTTTTTTCATCTTGG+TGG | + | chr3_2:79671183-79671202 | Msa0428730:intron | 35.0% |
| AAATCAAAGAGGCTTGATCA+GGG | - | chr3_2:79671360-79671379 | None:intergenic | 35.0% | |
| AAAATCAAAGAGGCTTGATC+AGG | - | chr3_2:79671361-79671380 | None:intergenic | 35.0% | |
| ATGAATCCTGATTCATCAGA+GGG | - | chr3_2:79671466-79671485 | None:intergenic | 35.0% | |
| TCTCTTAGCTGCCTATTTAA+TGG | + | chr3_2:79671507-79671526 | Msa0428730:CDS | 35.0% | |
| CTCTTAGCTGCCTATTTAAT+GGG | + | chr3_2:79671508-79671527 | Msa0428730:CDS | 35.0% | |
| !! | TAAACCAAAAAGTGCTGATG+AGG | + | chr3_2:79671651-79671670 | Msa0428730:CDS | 35.0% |
| TCACTAATCTCATTGTGCAT+AGG | - | chr3_2:79671715-79671734 | None:intergenic | 35.0% | |
| !!! | CTATGTGGAGCATTTTTTTG+CGG | - | chr3_2:79671778-79671797 | None:intergenic | 35.0% |
| CAAAAAAATGCTCCACATAG+AGG | + | chr3_2:79671778-79671797 | Msa0428730:CDS | 35.0% | |
| GGTCAGATTTGTCAATCTTT+GGG | + | chr3_2:79671907-79671926 | Msa0428730:CDS | 35.0% | |
| ATCAGCATATCCAATTTCCT+AGG | + | chr3_2:79671961-79671980 | Msa0428730:CDS | 35.0% | |
| !! | ACTTCTCTGAAGTTATAGTG+AGG | + | chr3_2:79672001-79672020 | Msa0428730:CDS | 35.0% |
| TTCAAAAAATCCGGCAAAGT+TGG | - | chr3_2:79672330-79672349 | None:intergenic | 35.0% | |
| AACCAAACCTATGGTATAGT+AGG | - | chr3_2:79672421-79672440 | None:intergenic | 35.0% | |
| ! | TACTATACCATAGGTTTGGT+TGG | + | chr3_2:79672420-79672439 | Msa0428730:CDS | 35.0% |
| ! | ATAGCAATAACCATGGGTTT+TGG | + | chr3_2:79672456-79672475 | Msa0428730:CDS | 35.0% |
| !!! | ATAACCATGGGTTTTGGATA+TGG | + | chr3_2:79672462-79672481 | Msa0428730:CDS | 35.0% |
| TGCTAATGCAATTGACCAAT+GGG | - | chr3_2:79672490-79672509 | None:intergenic | 35.0% | |
| !! | CAGCAACTTCAGAAGTATTT+GGG | + | chr3_2:79672508-79672527 | Msa0428730:CDS | 35.0% |
| TGCTAAAATTCCACAAGTCA+AGG | - | chr3_2:79672754-79672773 | None:intergenic | 35.0% | |
| TCATTGTTCAAAGGACTAAG+AGG | + | chr3_2:79672808-79672827 | Msa0428730:CDS | 35.0% | |
| CTTCCCATTACCATAAAGTT+GGG | - | chr3_2:79672841-79672860 | None:intergenic | 35.0% | |
| ACTTCCCATTACCATAAAGT+TGG | - | chr3_2:79672842-79672861 | None:intergenic | 35.0% | |
| ATAAGATAAGCAGCCTAGCT+AGG | + | chr3_2:79670273-79670292 | Msa0428730:five_prime_UTR | 40.0% | |
| AGAAATTTGTGGGACACAGA+TGG | + | chr3_2:79670340-79670359 | Msa0428730:CDS | 40.0% | |
| GAAATTTGTGGGACACAGAT+GGG | + | chr3_2:79670341-79670360 | Msa0428730:CDS | 40.0% | |
| ! | ATGTGGGATATGTCATTTGC+AGG | + | chr3_2:79670381-79670400 | Msa0428730:CDS | 40.0% |
| GCAAGTAGCTTTCTTAAGTG+TGG | + | chr3_2:79670467-79670486 | Msa0428730:CDS | 40.0% | |
| AGCTTTCTTAAGTGTGGCTA+AGG | + | chr3_2:79670473-79670492 | Msa0428730:CDS | 40.0% | |
| CTTAAGTGTGGCTAAGGATT+TGG | + | chr3_2:79670479-79670498 | Msa0428730:CDS | 40.0% | |
| ACAAGTATAACTGCCCAAAC+AGG | - | chr3_2:79670549-79670568 | None:intergenic | 40.0% | |
| GTTTGGGCAGTTATACTTGT+TGG | + | chr3_2:79670549-79670568 | Msa0428730:CDS | 40.0% | |
| !! | TTTGGCTTGTTGTAACACAC+AGG | + | chr3_2:79670604-79670623 | Msa0428730:CDS | 40.0% |
| TCCTTCTTTGCCTTTATGGA+CGG | + | chr3_2:79670629-79670648 | Msa0428730:CDS | 40.0% | |
| CACATACATACCGTCCATAA+AGG | - | chr3_2:79670642-79670661 | None:intergenic | 40.0% | |
| TTCATCTTGGTGGGACAAAA+TGG | + | chr3_2:79671193-79671212 | Msa0428730:CDS | 40.0% | |
| ATACTACAACACAGCAGCAT+TGG | + | chr3_2:79671222-79671241 | Msa0428730:CDS | 40.0% | |
| TCCTTTCAATATCCCTACCA+CGG | - | chr3_2:79671284-79671303 | None:intergenic | 40.0% | |
| GGGATATTGAAAGGATTCGT+TGG | + | chr3_2:79671289-79671308 | Msa0428730:CDS | 40.0% | |
| !! | AAAGGATTCGTTGGCTTAAG+CGG | + | chr3_2:79671298-79671317 | Msa0428730:CDS | 40.0% |
| CATGAATCCTGATTCATCAG+AGG | - | chr3_2:79671467-79671486 | None:intergenic | 40.0% | |
| ! | TGTTCCTCATCAGCACTTTT+TGG | - | chr3_2:79671658-79671677 | None:intergenic | 40.0% |
| GTAAAATCCTCTCCTCTATG+TGG | - | chr3_2:79671793-79671812 | None:intergenic | 40.0% | |
| ! | GTTTCTATCGTCTTAGGTTG+TGG | + | chr3_2:79671856-79671875 | Msa0428730:CDS | 40.0% |
| GGGTCAGATTTGTCAATCTT+TGG | + | chr3_2:79671906-79671925 | Msa0428730:CDS | 40.0% | |
| ATTCAAGCAGTGATGTCCTT+GGG | + | chr3_2:79672390-79672409 | Msa0428730:CDS | 40.0% | |
| CTCCTACTATACCATAGGTT+TGG | + | chr3_2:79672416-79672435 | Msa0428730:CDS | 40.0% | |
| AACTTGTCCAACCAAACCTA+TGG | - | chr3_2:79672430-79672449 | None:intergenic | 40.0% | |
| !! | GTTTTGGATATGGATCCCAT+TGG | + | chr3_2:79672472-79672491 | Msa0428730:CDS | 40.0% |
| CTGCTAATGCAATTGACCAA+TGG | - | chr3_2:79672491-79672510 | None:intergenic | 40.0% | |
| !! | GCAGCAACTTCAGAAGTATT+TGG | + | chr3_2:79672507-79672526 | Msa0428730:CDS | 40.0% |
| ATACAAGCAGAGATCCAACT+GGG | - | chr3_2:79672578-79672597 | None:intergenic | 40.0% | |
| ATCTCTGCTTGTATCTGGAT+TGG | + | chr3_2:79672584-79672603 | Msa0428730:CDS | 40.0% | |
| !! | ATAAGGCATTGCCAATTTCG+CGG | - | chr3_2:79672676-79672695 | None:intergenic | 40.0% |
| ! | GCAATGCCTTATTATGGTAC+CGG | + | chr3_2:79672684-79672703 | Msa0428730:CDS | 40.0% |
| TGGTGTTTGTGTGTGCAATG+TGG | + | chr3_2:79670364-79670383 | Msa0428730:CDS | 45.0% | |
| GGTGTTTGTGTGTGCAATGT+GGG | + | chr3_2:79670365-79670384 | Msa0428730:CDS | 45.0% | |
| GCAGGAACAGCTTACATGTT+TGG | + | chr3_2:79670399-79670418 | Msa0428730:CDS | 45.0% | |
| ACCAGTCATAAAGAGCAGCA+TGG | + | chr3_2:79670431-79670450 | Msa0428730:CDS | 45.0% | |
| CCAGTCATAAAGAGCAGCAT+GGG | + | chr3_2:79670432-79670451 | Msa0428730:CDS | 45.0% | |
| AAGGATTTGGGTGACAACGT+TGG | + | chr3_2:79670492-79670511 | Msa0428730:CDS | 45.0% | |
| ! | ACAACGTTGGACTTCTAGCT+GGG | + | chr3_2:79670505-79670524 | Msa0428730:CDS | 45.0% |
| CTGGGTTTATCAGCAAAGCT+TGG | + | chr3_2:79670523-79670542 | Msa0428730:CDS | 45.0% | |
| GGTGTCCTTCAGAATGTTGT+TGG | + | chr3_2:79670570-79670589 | Msa0428730:CDS | 45.0% | |
| GGCTTCCTTCTTTGCCTTTA+TGG | + | chr3_2:79670625-79670644 | Msa0428730:CDS | 45.0% | |
| ACCGTCCATAAAGGCAAAGA+AGG | - | chr3_2:79670633-79670652 | None:intergenic | 45.0% | |
| ! | TTCTGGGAAACTTTGCACAC+AGG | - | chr3_2:79671251-79671270 | None:intergenic | 45.0% |
| CAAAGTTTCCCAGAAAACCG+AGG | + | chr3_2:79671256-79671275 | Msa0428730:CDS | 45.0% | |
| CTTTCAATATCCCTACCACG+GGG | - | chr3_2:79671282-79671301 | None:intergenic | 45.0% | |
| CCTTTCAATATCCCTACCAC+GGG | - | chr3_2:79671283-79671302 | None:intergenic | 45.0% | |
| TTGGCTTAAGCGGTGCAATT+TGG | + | chr3_2:79671308-79671327 | Msa0428730:CDS | 45.0% | |
| TCTAGACCCTCTGATGAATC+AGG | + | chr3_2:79671457-79671476 | Msa0428730:CDS | 45.0% | |
| GTAGTTGCTGCAACAATGGA+TGG | - | chr3_2:79671691-79671710 | None:intergenic | 45.0% | |
| AGGTGTAGTTGCTGCAACAA+TGG | - | chr3_2:79671695-79671714 | None:intergenic | 45.0% | |
| AAATGCTCCACATAGAGGAG+AGG | + | chr3_2:79671783-79671802 | Msa0428730:CDS | 45.0% | |
| ! | ATCGTCTTAGGTTGTGGATC+AGG | + | chr3_2:79671862-79671881 | Msa0428730:CDS | 45.0% |
| ATGTTCAGCTCCAACTTTGC+CGG | + | chr3_2:79672317-79672336 | Msa0428730:intron | 45.0% | |
| ATTTGGATACCCGAGACTTG+TGG | + | chr3_2:79672356-79672375 | Msa0428730:CDS | 45.0% | |
| GATTCAAGCAGTGATGTCCT+TGG | + | chr3_2:79672389-79672408 | Msa0428730:CDS | 45.0% | |
| GGACTCTCCTACTATACCAT+AGG | + | chr3_2:79672411-79672430 | Msa0428730:CDS | 45.0% | |
| GGATCCATATCCAAAACCCA+TGG | - | chr3_2:79672469-79672488 | None:intergenic | 45.0% | |
| CTTACAATTGCTAGCCCAGT+TGG | + | chr3_2:79672561-79672580 | Msa0428730:CDS | 45.0% | |
| GATACAAGCAGAGATCCAAC+TGG | - | chr3_2:79672579-79672598 | None:intergenic | 45.0% | |
| GTTGGATCTCTGCTTGTATC+TGG | + | chr3_2:79672579-79672598 | Msa0428730:CDS | 45.0% | |
| AACGAGTTGCTTCTTTGCGA+AGG | + | chr3_2:79672714-79672733 | Msa0428730:CDS | 45.0% | |
| TCACAGTGAAGTGGGAAGAG+AGG | + | chr3_2:79670247-79670266 | Msa0428730:five_prime_UTR | 50.0% | |
| ATTTGTGGGACACAGATGGG+TGG | + | chr3_2:79670344-79670363 | Msa0428730:CDS | 50.0% | |
| CCCATGCTGCTCTTTATGAC+TGG | - | chr3_2:79670435-79670454 | None:intergenic | 50.0% | |
| GACAACGTTGGACTTCTAGC+TGG | + | chr3_2:79670504-79670523 | Msa0428730:CDS | 50.0% | |
| TCAGCAAAGCTTGGCCTGTT+TGG | + | chr3_2:79670532-79670551 | Msa0428730:CDS | 50.0% | |
| CAGCAAAGCTTGGCCTGTTT+GGG | + | chr3_2:79670533-79670552 | Msa0428730:CDS | 50.0% | |
| CCCGTGGTAGGGATATTGAA+AGG | + | chr3_2:79671280-79671299 | Msa0428730:CDS | 50.0% | |
| CATAGCAGTTGGTCCAGCAA+TGG | + | chr3_2:79671384-79671403 | Msa0428730:CDS | 50.0% | |
| TCCAATTTCCTAGGCCGTGT+TGG | + | chr3_2:79671970-79671989 | Msa0428730:CDS | 50.0% | |
| ACCAACACGGCCTAGGAAAT+TGG | - | chr3_2:79671974-79671993 | None:intergenic | 50.0% | |
| AATTTCCTAGGCCGTGTTGG+TGG | + | chr3_2:79671973-79671992 | Msa0428730:CDS | 50.0% | |
| ATTGCCAACGCCACAAGTCT+CGG | - | chr3_2:79672369-79672388 | None:intergenic | 50.0% | |
| GGTATAGTAGGAGAGTCCCA+AGG | - | chr3_2:79672409-79672428 | None:intergenic | 50.0% | |
| TTATGGAGCCTCCGCGAAAT+TGG | + | chr3_2:79672662-79672681 | Msa0428730:CDS | 50.0% | |
| !! | GTAGTTTGCTTGGTTGCAGC+TGG | + | chr3_2:79672774-79672793 | Msa0428730:CDS | 50.0% |
| AGAAGTAGCCGCCACCAACA+CGG | - | chr3_2:79671987-79672006 | None:intergenic | 55.0% | |
| ATACCCGAGACTTGTGGCGT+TGG | + | chr3_2:79672362-79672381 | Msa0428730:CDS | 55.0% | |
| TTGCCAACGCCACAAGTCTC+GGG | - | chr3_2:79672368-79672387 | None:intergenic | 55.0% | |
| ! | AGGCATTGCCAATTTCGCGG+AGG | - | chr3_2:79672673-79672692 | None:intergenic | 55.0% |
| AAAACCGAGGCCCCGTGGTA+GGG | + | chr3_2:79671269-79671288 | Msa0428730:CDS | 60.0% | |
| ATATCCCTACCACGGGGCCT+CGG | - | chr3_2:79671276-79671295 | None:intergenic | 60.0% | |
| ! | TTCCTAGGCCGTGTTGGTGG+CGG | + | chr3_2:79671976-79671995 | Msa0428730:CDS | 60.0% |
| ! | CCACGGGGCCTCGGTTTTCT+GGG | - | chr3_2:79671267-79671286 | None:intergenic | 65.0% |
| ! | ACCACGGGGCCTCGGTTTTC+TGG | - | chr3_2:79671268-79671287 | None:intergenic | 65.0% |
| GAAAACCGAGGCCCCGTGGT+AGG | + | chr3_2:79671268-79671287 | Msa0428730:CDS | 65.0% | |
| CCCAGAAAACCGAGGCCCCG+TGG | + | chr3_2:79671264-79671283 | Msa0428730:CDS | 70.0% | |
| AGCCGCCACCAACACGGCCT+AGG | - | chr3_2:79671981-79672000 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79670152 | 79672872 | 79670152 | ID=Msa0428730;Name=Msa0428730 |
| chr3_2 | mRNA | 79670152 | 79672872 | 79670152 | ID=Msa0428730-mRNA-1;Parent=Msa0428730;Name=Msa0428730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=163|0.5|0.33|1|1|1|3|0|577 |
| chr3_2 | exon | 79670152 | 79670650 | 79670152 | ID=Msa0428730-mRNA-1:exon:21506;Parent=Msa0428730-mRNA-1 |
| chr3_2 | exon | 79671184 | 79672033 | 79671184 | ID=Msa0428730-mRNA-1:exon:21507;Parent=Msa0428730-mRNA-1 |
| chr3_2 | exon | 79672325 | 79672872 | 79672325 | ID=Msa0428730-mRNA-1:exon:21508;Parent=Msa0428730-mRNA-1 |
| chr3_2 | five_prime_UTR | 79670152 | 79670314 | 79670152 | ID=Msa0428730-mRNA-1:five_prime_utr;Parent=Msa0428730-mRNA-1 |
| chr3_2 | CDS | 79670315 | 79670650 | 79670315 | ID=Msa0428730-mRNA-1:cds;Parent=Msa0428730-mRNA-1 |
| chr3_2 | CDS | 79671184 | 79672033 | 79671184 | ID=Msa0428730-mRNA-1:cds;Parent=Msa0428730-mRNA-1 |
| chr3_2 | CDS | 79672325 | 79672872 | 79672325 | ID=Msa0428730-mRNA-1:cds;Parent=Msa0428730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
