AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0504090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504090 MtrunA17_Chr3g0103771 98.694 842 9 1 1 842 1 840 0.0 1725
Msa0504090 MtrunA17_Chr2g0282731 48.783 822 403 10 26 842 180 988 0.0 810
Msa0504090 MtrunA17_Chr6g0454411 66.169 402 135 1 442 842 576 977 0.0 580
Msa0504090 MtrunA17_Chr6g0454411 62.019 416 152 3 26 436 90 504 4.54e-177 536
Msa0504090 MtrunA17_Chr4g0043041 65.931 408 137 2 437 842 574 981 0.0 578
Msa0504090 MtrunA17_Chr4g0043041 58.491 424 171 2 18 436 71 494 6.42e-173 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0504090 AT3G46970.1 82.915 837 141 1 8 842 5 841 0.0 1470
Msa0504090 AT3G29320.1 60.274 876 291 6 24 842 87 962 0.0 1097

Find 237 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGCTTGCTTCTTGCTTTC+TGG 0.078572 3_4:-48024242 Msa0504090:CDS
TCAATATATCACTGTGTAAT+TGG 0.122849 3_4:+48022292 None:intergenic
CTCAGTATGCTAAGGAAATT+TGG 0.156164 3_4:-48019118 Msa0504090:CDS
TTAACCACTTAGTGATTATT+TGG 0.195969 3_4:+48022160 None:intergenic
AAGAGGCAAAGAAGTTTATT+AGG 0.200703 3_4:-48019850 Msa0504090:CDS
ACTTTCCAACATGCGCATTT+TGG 0.216640 3_4:-48022612 Msa0504090:CDS
CCATCCGAACAACTGGCTTC+TGG 0.226210 3_4:+48022579 None:intergenic
GCCACCGATACATTGTAATT+TGG 0.237509 3_4:+48020824 None:intergenic
TTGAATGGGTGCCTTATTAT+AGG 0.250074 3_4:-48020713 Msa0504090:CDS
GACCATTTCTCCAGTGCTTC+GGG 0.261697 3_4:+48022834 None:intergenic
AACACTTAATTTACCTGCTT+GGG 0.262521 3_4:-48024209 Msa0504090:CDS
TGAATGTCAAATAGAGTATC+AGG 0.269003 3_4:+48021896 None:intergenic
GATTCATTGGAAGGAAATTC+TGG 0.270874 3_4:-48019788 Msa0504090:CDS
GTCCATTACAAATACCAATT+TGG 0.272735 3_4:+48018856 None:intergenic
TTGCAAATTATGTTTCAATA+TGG 0.291770 3_4:-48022257 Msa0504090:CDS
CAACCCATTGCTTGATTCAT+TGG 0.306445 3_4:-48019801 Msa0504090:CDS
TTTACACTTACCTTCCATTA+GGG 0.309550 3_4:+48023933 None:intergenic
ATTTGCTTAGCCTTCCAAAT+TGG 0.310648 3_4:-48018870 Msa0504090:three_prime_UTR
ATTTACACTTACCTTCCATT+AGG 0.314637 3_4:+48023932 None:intergenic
AGAGTTGATGCGTTTACTTA+TGG 0.314885 3_4:-48023071 Msa0504090:CDS
GTGTGTATGCCAGCCGAAAA+TGG 0.331791 3_4:-48023815 Msa0504090:intron
CATCTAAAGTACCTATAATA+AGG 0.332291 3_4:+48020702 None:intergenic
GCTTATGATGTGCCAATTCC+TGG 0.336675 3_4:-48023765 Msa0504090:CDS
GCGAAGACTGATGGTGTTCT+TGG 0.337746 3_4:+48023734 None:intergenic
CCTGCCTCCTCTCCTTGAAC+CGG 0.339166 3_4:+48023170 None:intergenic
ATCACCATTAGTCTCTTCTA+TGG 0.342780 3_4:+48025674 None:intergenic
GTGTTCTTGGTTTGGTATCC+AGG 0.343283 3_4:+48023747 None:intergenic
ATGGAGCTAATGTGGAAATC+AGG 0.343321 3_4:-48020682 Msa0504090:CDS
GCATCAACTCTGGTATTGAT+AGG 0.348225 3_4:+48023083 None:intergenic
TTGGAAGGAAATTCTGGTTA+TGG 0.355039 3_4:-48019782 Msa0504090:CDS
TTGGTTTGGTATCCAGGAAT+TGG 0.357731 3_4:+48023753 None:intergenic
TTGTACCCTATCAGATTCTT+TGG 0.358703 3_4:-48023971 Msa0504090:CDS
CATCCGAACAACTGGCTTCT+GGG 0.363739 3_4:+48022580 None:intergenic
AGACCATTTCTCCAGTGCTT+CGG 0.373578 3_4:+48022833 None:intergenic
AACATGAAATTTGCTTTGAA+TGG 0.374053 3_4:-48020728 Msa0504090:CDS
TTCCAAATTGGTATTTGTAA+TGG 0.376585 3_4:-48018858 Msa0504090:three_prime_UTR
TTTATTAGGAGTGGGGTGTT+TGG 0.376904 3_4:-48019836 Msa0504090:CDS
GCCTCTTCAAATCGAGGATC+CGG 0.386133 3_4:+48019866 None:intergenic
GCAAAGAAGTTTATTAGGAG+TGG 0.386572 3_4:-48019845 Msa0504090:CDS
CAACACTTAATTTACCTGCT+TGG 0.390154 3_4:-48024210 Msa0504090:CDS
AAATTTGCCATCCGAACAAC+TGG 0.392112 3_4:+48022572 None:intergenic
ATGTCTATCTTAAGTACTGC+TGG 0.395817 3_4:-48019173 Msa0504090:CDS
CGTGGTGATTACTTTCTTGT+TGG 0.397265 3_4:-48019758 Msa0504090:CDS
ACACCATCAGTCTTCGCCTC+TGG 0.401475 3_4:-48023728 Msa0504090:CDS
GCTTCACTCACGAGCTCAAC+AGG 0.402172 3_4:-48023634 Msa0504090:intron
CTTATTATAGGTACTTTAGA+TGG 0.405360 3_4:-48020701 Msa0504090:CDS
CGAGCCTTGACCAATGCTAT+TGG 0.405477 3_4:-48024578 Msa0504090:CDS
TTCTTGCTTTCTGGATTCCA+TGG 0.411344 3_4:-48024233 Msa0504090:CDS
CGACTTACACAAATGCTAAA+CGG 0.415136 3_4:-48021111 Msa0504090:CDS
GACTGATGGTGTTCTTGGTT+TGG 0.418565 3_4:+48023739 None:intergenic
TGTTGGGATAGCTCACTTCC+TGG 0.419593 3_4:+48020788 None:intergenic
TCCTGAGCATCCACGTAGCT+TGG 0.420103 3_4:+48019725 None:intergenic
TCCCCGAAGCACTGGAGAAA+TGG 0.420397 3_4:-48022836 Msa0504090:CDS
CCACCTTCTGTGGCATCCCC+AGG 0.425804 3_4:+48023351 None:intergenic
ACCTGGCCAAAGAATCTGAT+AGG 0.427402 3_4:+48023965 None:intergenic
TGTTCGTGATCGTCTCGTTC+AGG 0.427671 3_4:-48025490 Msa0504090:intron
CAATATATCACTGTGTAATT+GGG 0.428524 3_4:+48022293 None:intergenic
CACTGTCCTCCCCGAAGCAC+TGG 0.430389 3_4:-48022844 Msa0504090:CDS
GATAAGTAGTAAGTTTGCTT+GGG 0.432852 3_4:+48024620 None:intergenic
TGATAAGTAGTAAGTTTGCT+TGG 0.439266 3_4:+48024619 None:intergenic
CAAAGAAGTTTATTAGGAGT+GGG 0.443416 3_4:-48019844 Msa0504090:CDS
GGACATCATTTCCCGGTTCA+AGG 0.446314 3_4:-48023182 Msa0504090:CDS
AAGTTCCAAAATAAAACTAA+TGG 0.448080 3_4:-48022228 Msa0504090:CDS
GTGATTATTTGGCTTAGCTC+AGG 0.450262 3_4:+48022171 None:intergenic
AATTACAGGACATCATTTCC+CGG 0.450355 3_4:-48023189 Msa0504090:intron
GATGTATCCAGCTGAAATTA+TGG 0.450675 3_4:+48019074 None:intergenic
GCTGATGCTTTGCGCAAGTT+CGG 0.450707 3_4:-48024530 Msa0504090:CDS
ATGTTAGAAGCAATCTCATC+AGG 0.454704 3_4:+48025594 None:intergenic
TTATCAATGGAGTTCCTTCA+AGG 0.457142 3_4:-48024602 Msa0504090:CDS
AGGAGGAAGTTGCTGAGGAC+TGG 0.459433 3_4:-48024129 Msa0504090:CDS
CCTGAGCATCCACGTAGCTT+GGG 0.460185 3_4:+48019726 None:intergenic
CTTCCAATGAATCAAGCAAT+GGG 0.462569 3_4:+48019798 None:intergenic
CACCATCAGTCTTCGCCTCT+GGG 0.463304 3_4:-48023727 Msa0504090:CDS
ACTGCACGCACTGTCATGAT+TGG 0.464857 3_4:-48021148 Msa0504090:CDS
CTTATGGATGAAGAAGGGCT+TGG 0.467886 3_4:-48023055 Msa0504090:CDS
AGGAGAGGAGGCAGGGACCT+TGG 0.468311 3_4:-48023162 Msa0504090:CDS
CCGGTTCAAGGAGAGGAGGC+AGG 0.470005 3_4:-48023170 Msa0504090:CDS
GCACTAGGAAATGGTGGTCT+TGG 0.471328 3_4:-48024265 Msa0504090:CDS
CCATTGCTTGATTCATTGGA+AGG 0.471435 3_4:-48019797 Msa0504090:CDS
GCCTGCGGTACTAATATGTT+GGG 0.473266 3_4:+48020772 None:intergenic
ATAGCATTTAAACTTTCTGA+TGG 0.474816 3_4:+48018798 None:intergenic
TGGTCAAGGCTCGACCTTGA+AGG 0.476017 3_4:+48024588 None:intergenic
CCCAAGCTACGTGGATGCTC+AGG 0.476610 3_4:-48019726 Msa0504090:CDS
ATTCAAATTTCCAATAGCAT+TGG 0.479715 3_4:+48024568 None:intergenic
GCCAATGGATTTGCAACAGC+AGG 0.481609 3_4:+48025624 None:intergenic
CCTTCCAATGAATCAAGCAA+TGG 0.482739 3_4:+48019797 None:intergenic
CGTGAAGATATTTGAAGGAA+TGG 0.483563 3_4:+48026172 None:intergenic
ACATGAAATTTGCTTTGAAT+GGG 0.484003 3_4:-48020727 Msa0504090:CDS
CCCTATCAGATTCTTTGGCC+AGG 0.486248 3_4:-48023966 Msa0504090:CDS
ATCCCCAGAAGCCAGTTGTT+CGG 0.488192 3_4:-48022583 Msa0504090:CDS
CGTTTACTTATGGATGAAGA+AGG 0.488789 3_4:-48023061 Msa0504090:CDS
TGTGGTCAATAGCTACTTGA+AGG 0.489084 3_4:-48021041 Msa0504090:intron
GGCTTGGATGGGATGAAGCA+TGG 0.489941 3_4:-48023039 Msa0504090:CDS
CAGGTCGAGGTTAACCCTAA+TGG 0.489967 3_4:-48023947 Msa0504090:CDS
TTGTGATTTGAAGTTCAAAC+CGG 0.490504 3_4:-48019885 Msa0504090:intron
GGAGGCAGGGACCTTGGAAC+TGG 0.491790 3_4:-48023156 Msa0504090:CDS
AGAGTGGTCGTCTGCAAAGA+TGG 0.498113 3_4:-48021975 Msa0504090:CDS
TTCACTCTCAAGATCCAGTC+GGG 0.498449 3_4:+48022634 None:intergenic
GAAGGAAAGAGAGGATGGAC+TGG 0.498810 3_4:-48020594 Msa0504090:intron
CAAACAGAAGTTTAGCCCTT+GGG 0.500543 3_4:-48024014 Msa0504090:intron
TGCCTGCGGTACTAATATGT+TGG 0.500593 3_4:+48020771 None:intergenic
CAGTACGTTCTGAAGGTGAC+AGG 0.500818 3_4:-48021932 Msa0504090:CDS
CCAAACAGAAGTTTAGCCCT+TGG 0.504145 3_4:-48024015 Msa0504090:intron
TGGATGAAGAAGGGCTTGGA+TGG 0.504963 3_4:-48023051 Msa0504090:CDS
GTGGCGGAGGTGCTTATCCC+AGG 0.507556 3_4:-48020806 Msa0504090:CDS
AGCAACCTTCGTCGGAAACT+CGG 0.508546 3_4:+48023132 None:intergenic
GCAAACTTACTACTTATCAA+TGG 0.509704 3_4:-48024615 Msa0504090:CDS
GATAATCGCAAAAGAAGGTC+AGG 0.510735 3_4:-48024149 Msa0504090:CDS
CCGTGTACCATAATTTCAGC+TGG 0.513087 3_4:-48019081 Msa0504090:exon
CAGATTCTTTGGCCAGGTCG+AGG 0.513698 3_4:-48023960 Msa0504090:CDS
ATCTTAAGTACTGCTGGGAG+TGG 0.515688 3_4:-48019167 Msa0504090:CDS
AAGGATGCAGCACTAGGAAA+TGG 0.519194 3_4:-48024274 Msa0504090:CDS
CCTGGGGATGCCACAGAAGG+TGG 0.519394 3_4:-48023351 Msa0504090:CDS
GGCCATCTATTATAGGTGAA+TGG 0.521441 3_4:-48022321 Msa0504090:intron
TGGAGCTAATGTGGAAATCA+GGG 0.523433 3_4:-48020681 Msa0504090:CDS
GTGGGAAGTTCAGCAGTGAC+AGG 0.524513 3_4:-48019148 Msa0504090:CDS
CAGGAAAAGGATGCAGCACT+AGG 0.524810 3_4:-48024280 Msa0504090:CDS
TGCTAAACGGATAGTCAAGC+TGG 0.525169 3_4:-48021098 Msa0504090:CDS
CAAGTCTCATTCTGTTTCAG+TGG 0.529577 3_4:-48018834 Msa0504090:three_prime_UTR
CACTGTCATGATTGGAGGAA+AGG 0.529940 3_4:-48021140 Msa0504090:CDS
TTCCCAGAGGCGAAGACTGA+TGG 0.530304 3_4:+48023725 None:intergenic
TTTGAAGGAATGGTATTGCT+AGG 0.531412 3_4:+48026182 None:intergenic
ACATATTAGTACCGCAGGCA+TGG 0.531917 3_4:-48020768 Msa0504090:CDS
TTCTTTGCCTCTTCAAATCG+AGG 0.532927 3_4:+48019860 None:intergenic
ACTCTGGTATTGATAGGGTC+GGG 0.533523 3_4:+48023089 None:intergenic
AAACAGATAATCGCAAAAGA+AGG 0.533857 3_4:-48024154 Msa0504090:CDS
GCACGCACTGTCATGATTGG+AGG 0.535278 3_4:-48021145 Msa0504090:CDS
TACTTTAGATGGAGCTAATG+TGG 0.537773 3_4:-48020690 Msa0504090:CDS
TTACAATGTATCGGTGGCGG+AGG 0.537864 3_4:-48020819 Msa0504090:CDS
ACACTTAATTTACCTGCTTG+GGG 0.538160 3_4:-48024208 Msa0504090:CDS
ATATACTTCTCATGAATGCA+AGG 0.538334 3_4:+48019051 None:intergenic
ATAAGTAAACGCATCAACTC+TGG 0.539867 3_4:+48023073 None:intergenic
TGTTCAAGCTCAAACTTGAA+AGG 0.539884 3_4:+48025537 None:intergenic
GGAAATTCTGGTTATGGTCG+TGG 0.539921 3_4:-48019776 Msa0504090:CDS
GCCAGCCGAAAATGGATTGG+CGG 0.540426 3_4:-48023807 Msa0504090:intron
AACTCTGGTATTGATAGGGT+CGG 0.542303 3_4:+48023088 None:intergenic
GCTTGGATGGGATGAAGCAT+GGG 0.543851 3_4:-48023038 Msa0504090:CDS
ATGGCATTACACCTCGAAGA+TGG 0.545189 3_4:-48022209 Msa0504090:CDS
CAGAAGGTGGAAAACTTCTA+CGG 0.546061 3_4:-48023338 Msa0504090:CDS
GATGGCTAATAAGCAGCGCT+TGG 0.548918 3_4:-48021957 Msa0504090:CDS
ACCGATCTTGACTTACTGAC+AGG 0.549416 3_4:-48022120 Msa0504090:CDS
CTGCCTCCTCTCCTTGAACC+GGG 0.550039 3_4:+48023171 None:intergenic
TCCCAACATATTAGTACCGC+AGG 0.550701 3_4:-48020773 Msa0504090:CDS
ATTACAAATACCAATTTGGA+AGG 0.551227 3_4:+48018860 None:intergenic
ACTTGAAGAAATAACCGAGC+AGG 0.556341 3_4:-48024501 Msa0504090:intron
CATGGTGCAGTGACAAGAAA+AGG 0.556413 3_4:-48019205 Msa0504090:intron
CTGAGGAAGGAAAGAGAGGA+TGG 0.557425 3_4:-48020599 Msa0504090:CDS
AAGCAGATGCATTGAGAGAG+AGG 0.557628 3_4:+48018953 None:intergenic
GACAATTGCTCAGTATGCTA+AGG 0.558452 3_4:-48019126 Msa0504090:CDS
TAGGAAATGGTGGTCTTGGT+CGG 0.558516 3_4:-48024261 Msa0504090:CDS
AGCAGATGCATTGAGAGAGA+GGG 0.558561 3_4:+48018954 None:intergenic
ATTGTCCAAAATGCGCATGT+TGG 0.561027 3_4:+48022607 None:intergenic
TGATGTACCTCGACTGAGGA+AGG 0.561412 3_4:-48020612 Msa0504090:CDS
GAAATTGCTTCCTCGTCACA+TGG 0.561842 3_4:-48022796 Msa0504090:CDS
GTAGCTGCCTCTTGTACTCG+TGG 0.562138 3_4:+48021861 None:intergenic
ATCCGAACAACTGGCTTCTG+GGG 0.563192 3_4:+48022581 None:intergenic
ACCTGCTGTTGCAAATCCAT+TGG 0.568297 3_4:-48025625 Msa0504090:CDS
CATCAACTCTGGTATTGATA+GGG 0.569093 3_4:+48023084 None:intergenic
AAAGAAGTTTATTAGGAGTG+GGG 0.569398 3_4:-48019843 Msa0504090:CDS
GGTTCCATAGAAGAGACTAA+TGG 0.569947 3_4:-48025678 Msa0504090:CDS
TCATTTCCCGGTTCAAGGAG+AGG 0.571549 3_4:-48023177 Msa0504090:CDS
GCATACGTGAAGATATTTGA+AGG 0.572648 3_4:+48026167 None:intergenic
TAAGCCAAATAATCACTAAG+TGG 0.573231 3_4:-48022164 Msa0504090:CDS
AGCGTATCCACGAGTACAAG+AGG 0.573947 3_4:-48021868 Msa0504090:CDS
GGATGAAGAAGGGCTTGGAT+GGG 0.574485 3_4:-48023050 Msa0504090:CDS
CACTTAATTTACCTGCTTGG+GGG 0.574585 3_4:-48024207 Msa0504090:CDS
TGTCTATCTTAAGTACTGCT+GGG 0.576462 3_4:-48019172 Msa0504090:CDS
ACCTGTCAGTAAGTCAAGAT+CGG 0.576769 3_4:+48022119 None:intergenic
AATGATAAGTAAAACCCGAC+TGG 0.577293 3_4:-48022648 Msa0504090:CDS
AGGTAAATTAAGTGTTGCCA+TGG 0.577786 3_4:+48024216 None:intergenic
CGGTTCAAGGAGAGGAGGCA+GGG 0.579612 3_4:-48023169 Msa0504090:CDS
CATTAGGGTTAACCTCGACC+TGG 0.581641 3_4:+48023948 None:intergenic
AATTGTACAGCAACCTTCGT+CGG 0.581739 3_4:+48023124 None:intergenic
TCTGTTTAAATAGTCCGTAC+CGG 0.582859 3_4:+48024170 None:intergenic
AGGTCAGGAGGAAGTTGCTG+AGG 0.588335 3_4:-48024134 Msa0504090:CDS
CATCCGCTGTCGCACCAAAG+AGG 0.589453 3_4:+48020633 None:intergenic
GTTGGGATAGCTCACTTCCT+GGG 0.589645 3_4:+48020789 None:intergenic
TTTCCTCTTTGGTGCGACAG+CGG 0.590527 3_4:-48020636 Msa0504090:CDS
ATTTCCAATAGCATTGGTCA+AGG 0.590725 3_4:+48024574 None:intergenic
AAATTACAATGTATCGGTGG+CGG 0.590929 3_4:-48020822 Msa0504090:CDS
CCAGAAGCCAGTTGTTCGGA+TGG 0.591835 3_4:-48022579 Msa0504090:CDS
AATCGCAAAAGAAGGTCAGG+AGG 0.592795 3_4:-48024146 Msa0504090:CDS
AGGAGATGAGCCCTGAAGAA+CGG 0.597395 3_4:-48021180 Msa0504090:CDS
TCTCTTTCCTTCCTCAGTCG+AGG 0.597849 3_4:+48020605 None:intergenic
TCGTGCCTCACAATTTCCCA+AGG 0.598830 3_4:+48023998 None:intergenic
GGAAACTCGGACCAGTTCCA+AGG 0.600518 3_4:+48023145 None:intergenic
AGTTGCTGAGGACTGGCTCG+AGG 0.600739 3_4:-48024122 Msa0504090:intron
GTCAAGCTGGTCAATGATGT+TGG 0.601373 3_4:-48021085 Msa0504090:CDS
TTAGCCCTTGGGAAATTGTG+AGG 0.601926 3_4:-48024003 Msa0504090:CDS
TATCCTGGGGATGCCACAGA+AGG 0.602412 3_4:-48023354 Msa0504090:CDS
GTTTACTTATGGATGAAGAA+GGG 0.604886 3_4:-48023060 Msa0504090:CDS
CTGGTCCGAGTTTCCGACGA+AGG 0.604965 3_4:-48023137 Msa0504090:CDS
TTTGTGATAGGAGAAAGATA+AGG 0.605342 3_4:-48025713 Msa0504090:intron
CCAGCTGAAATTATGGTACA+CGG 0.605531 3_4:+48019081 None:intergenic
TTCAAGTAGCTATTGACCAC+AGG 0.606557 3_4:+48021043 None:intergenic
ACCGGATCCTCGATTTGAAG+AGG 0.608188 3_4:-48019867 Msa0504090:CDS
AATGGTCTCAGTCTGTAATG+TGG 0.608222 3_4:-48022818 Msa0504090:CDS
TCTTAAGTACTGCTGGGAGT+GGG 0.611052 3_4:-48019166 Msa0504090:CDS
AGTGAGGACTATATTGAGCA+TGG 0.612263 3_4:+48025565 None:intergenic
ACACAGTGATATATTGAAGT+CGG 0.612649 3_4:-48022286 Msa0504090:CDS
TGGTATTGATAGGGTCGGGT+GGG 0.615079 3_4:+48023093 None:intergenic
CTTGGCACAGTACGTTCTGA+AGG 0.618440 3_4:-48021939 Msa0504090:CDS
GTGGAAATCAGGGAAGAGAT+CGG 0.619019 3_4:-48020671 Msa0504090:CDS
TATGGTTTGAGGTACCGGTA+CGG 0.619433 3_4:-48024184 Msa0504090:CDS
CTGGTATTGATAGGGTCGGG+TGG 0.620002 3_4:+48023092 None:intergenic
ATAGAAGAGACTAATGGTGA+TGG 0.620632 3_4:-48025672 Msa0504090:CDS
TATGCCAGCCGAAAATGGAT+TGG 0.620660 3_4:-48023810 Msa0504090:intron
GCCACTTGCTTCCATGCCTG+CGG 0.621602 3_4:+48020757 None:intergenic
GAAGAGACTAATGGTGATGG+TGG 0.623003 3_4:-48025669 Msa0504090:CDS
AGTACGTTCTGAAGGTGACA+GGG 0.624712 3_4:-48021931 Msa0504090:CDS
TGTGCCAAATTACAATGTAT+CGG 0.631942 3_4:-48020828 Msa0504090:CDS
TGGATGGGATGAAGCATGGG+AGG 0.633226 3_4:-48023035 Msa0504090:CDS
ACCATTTCTCCAGTGCTTCG+GGG 0.634093 3_4:+48022835 None:intergenic
CCTGGCCAAAGAATCTGATA+GGG 0.634245 3_4:+48023966 None:intergenic
TATACTTCTCATGAATGCAA+GGG 0.636811 3_4:+48019052 None:intergenic
GATGCAGCACTAGGAAATGG+TGG 0.643582 3_4:-48024271 Msa0504090:CDS
TCGGATGGCAAATTTGTGTG+TGG 0.644056 3_4:-48022564 Msa0504090:CDS
GAATGTCAAATAGAGTATCA+GGG 0.648034 3_4:+48021897 None:intergenic
GTTCACTCTCAAGATCCAGT+CGG 0.648340 3_4:+48022633 None:intergenic
TCGAGGTTAACCCTAATGGA+AGG 0.648776 3_4:-48023943 Msa0504090:intron
TTATGACTTCCCAAGCTACG+TGG 0.654121 3_4:-48019735 Msa0504090:CDS
TCGACTGAGGAAGGAAAGAG+AGG 0.654363 3_4:-48020603 Msa0504090:CDS
TTTCCCGGTTCAAGGAGAGG+AGG 0.656952 3_4:-48023174 Msa0504090:CDS
ACCGCAGGCATGGAAGCAAG+TGG 0.664367 3_4:-48020758 Msa0504090:CDS
ATTTCTCCAGTGCTTCGGGG+AGG 0.665090 3_4:+48022838 None:intergenic
GGTGCAGTGACAAGAAAAGG+TGG 0.675521 3_4:-48019202 Msa0504090:intron
CGTGCCTCACAATTTCCCAA+GGG 0.676969 3_4:+48023999 None:intergenic
GCCAAATTACAATGTATCGG+TGG 0.679301 3_4:-48020825 Msa0504090:CDS
TCTATGATTTCCATGTGACG+AGG 0.683452 3_4:+48022786 None:intergenic
CACAAGCTTTAGCTTCCCAG+AGG 0.688674 3_4:+48023712 None:intergenic
CGGATGATGTACCTCGACTG+AGG 0.697248 3_4:-48020616 Msa0504090:CDS
ATGAAGATCTGCAAGCAGAG+TGG 0.702272 3_4:-48021991 Msa0504090:CDS
CTTACTGACAGGTCTTCGAG+AGG 0.704813 3_4:-48022109 Msa0504090:intron
TATTGTAAACAGTGATCCTG+TGG 0.708804 3_4:-48021059 Msa0504090:CDS
AACTTGAAAGGTGAAAAGTG+AGG 0.718109 3_4:+48025549 None:intergenic
GTACGTTCTGAAGGTGACAG+GGG 0.729253 3_4:-48021930 Msa0504090:CDS
AATCAGGGAAGAGATCGGTG+AGG 0.747097 3_4:-48020666 Msa0504090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAACAATTTGATTAA+TGG - chr3_4:48019125-48019144 Msa0504090:CDS 10.0%
!! TTTATAACAATTTGATTAAT+GGG - chr3_4:48019126-48019145 Msa0504090:CDS 10.0%
!!! AAATTTTTTATTTTTTCTCT+TGG - chr3_4:48019156-48019175 Msa0504090:CDS 10.0%
!!! AATTTTTTATTTTTTCTCTT+GGG - chr3_4:48019157-48019176 Msa0504090:CDS 10.0%
!! AAGAAAGAGATTATTAAAAA+AGG + chr3_4:48018883-48018902 None:intergenic 15.0%
!!! TTTTGTATTTTTTTCTTACT+TGG - chr3_4:48019052-48019071 Msa0504090:three_prime_UTR 15.0%
!! AAAACATAAAAAATTAACAC+TGG + chr3_4:48019256-48019275 None:intergenic 15.0%
!!! ATATAAAAGTACTTATAGTT+TGG - chr3_4:48021164-48021183 Msa0504090:CDS 15.0%
!!! GATTTATTTTTATTCAATGA+TGG - chr3_4:48021323-48021342 Msa0504090:intron 15.0%
!! TTTCACAAATAATATAAAGA+GGG + chr3_4:48022626-48022645 None:intergenic 15.0%
!! ATTTCACAAATAATATAAAG+AGG + chr3_4:48022627-48022646 None:intergenic 15.0%
!! AAATTTATTTACTTCATGTT+GGG - chr3_4:48022659-48022678 Msa0504090:CDS 15.0%
!!! TTTGGTAAAACATTATTTTA+AGG + chr3_4:48023438-48023457 None:intergenic 15.0%
!!! AAACAATGAATATATTTTGA+TGG - chr3_4:48024637-48024656 Msa0504090:CDS 15.0%
!! AAATATAAAAAGGAAAATGT+GGG + chr3_4:48024774-48024793 None:intergenic 15.0%
!! AAAATATAAAAAGGAAAATG+TGG + chr3_4:48024775-48024794 None:intergenic 15.0%
!!! CGTTTTAAAAAATTAGAAAA+TGG + chr3_4:48024845-48024864 None:intergenic 15.0%
!!! TAAGTGTATATATTGTTTTT+TGG - chr3_4:48025764-48025783 Msa0504090:intron 15.0%
!! AAGTTGAATAATTGAAGAAA+TGG + chr3_4:48018908-48018927 None:intergenic 20.0%
!!! TTTTCTGACAATTTGATTAA+TGG - chr3_4:48019016-48019035 Msa0504090:three_prime_UTR 20.0%
!! TTTCTGACAATTTGATTAAT+GGG - chr3_4:48019017-48019036 Msa0504090:three_prime_UTR 20.0%
!! AAAGATAAGGATTTGAAAAA+TGG - chr3_4:48019301-48019320 Msa0504090:intron 20.0%
!! AAGATAAGGATTTGAAAAAT+GGG - chr3_4:48019302-48019321 Msa0504090:intron 20.0%
!! TATATGATGATACATTTACT+TGG - chr3_4:48019534-48019553 Msa0504090:intron 20.0%
!! AAAGAAGTAAAAAAGGTAAA+AGG + chr3_4:48020031-48020050 None:intergenic 20.0%
!!! AATTTAAAGCTAATTAACCA+AGG - chr3_4:48020157-48020176 Msa0504090:intron 20.0%
!!! ATTTAAAGCTAATTAACCAA+GGG - chr3_4:48020158-48020177 Msa0504090:intron 20.0%
!!! TTTGTTCTGAAATCTTATAA+TGG + chr3_4:48021501-48021520 None:intergenic 20.0%
!!! ATTTGTTTTGTAGATTTGTT+CGG - chr3_4:48021619-48021638 Msa0504090:intron 20.0%
!! AAATAATATAAAGAGGGTTA+TGG + chr3_4:48022620-48022639 None:intergenic 20.0%
!! GAAATTTATTTACTTCATGT+TGG - chr3_4:48022658-48022677 Msa0504090:CDS 20.0%
!! TTGCAAATTATGTTTCAATA+TGG - chr3_4:48022744-48022763 Msa0504090:intron 20.0%
!! AAGTTCCAAAATAAAACTAA+TGG - chr3_4:48022773-48022792 Msa0504090:CDS 20.0%
!!! TAATGCCATTAGTTTTATTT+TGG + chr3_4:48022781-48022800 None:intergenic 20.0%
!! CTATAGATATAAAAAGTTGA+AGG - chr3_4:48023182-48023201 Msa0504090:CDS 20.0%
!!! CATTATTTTAAGGATTGATA+TGG + chr3_4:48023428-48023447 None:intergenic 20.0%
!! TTAGTACCTCTAAATAAATT+TGG - chr3_4:48023518-48023537 Msa0504090:intron 20.0%
!!! TTTTCACCAAATTTATTTAG+AGG + chr3_4:48023527-48023546 None:intergenic 20.0%
!!! TTTGGTGAAAAATATTTTGA+AGG - chr3_4:48023536-48023555 Msa0504090:intron 20.0%
!! ATTTCTGCAAATTTATTTAG+AGG + chr3_4:48023605-48023624 None:intergenic 20.0%
!!! CATATTTTTCATAAAATGCT+GGG + chr3_4:48023764-48023783 None:intergenic 20.0%
!!! TCATATTTTTCATAAAATGC+TGG + chr3_4:48023765-48023784 None:intergenic 20.0%
!! TTGTGATGATATGTTTATTA+AGG - chr3_4:48024105-48024124 Msa0504090:intron 20.0%
!!! AAAAAAATGACATTTTTTGC+AGG + chr3_4:48024592-48024611 None:intergenic 20.0%
!!! CCACTTTTAAAATTTTGTAT+CGG + chr3_4:48024666-48024685 None:intergenic 20.0%
!!! CGATACAAAATTTTAAAAGT+GGG - chr3_4:48024664-48024683 Msa0504090:intron 20.0%
!!! GATACAAAATTTTAAAAGTG+GGG - chr3_4:48024665-48024684 Msa0504090:intron 20.0%
!! GTTGAAGTGAAAATATAAAA+AGG + chr3_4:48024784-48024803 None:intergenic 20.0%
!!! AAAGAAACTGAAGTATTTTT+AGG - chr3_4:48025038-48025057 Msa0504090:intron 20.0%
!!! AGTATTTTTAGGAAGTAAAT+AGG - chr3_4:48025049-48025068 Msa0504090:intron 20.0%
!! CAATCATTATGCAAATATTA+GGG + chr3_4:48025075-48025094 None:intergenic 20.0%
!! ACAATCATTATGCAAATATT+AGG + chr3_4:48025076-48025095 None:intergenic 20.0%
!! TTACTAAAATAACGTCTAAT+AGG + chr3_4:48025437-48025456 None:intergenic 20.0%
!! ATTAGATGTGATATAAAACT+TGG + chr3_4:48025554-48025573 None:intergenic 20.0%
!! CTTGAATTTGTAAAATAGTT+TGG + chr3_4:48025609-48025628 None:intergenic 20.0%
!!! AAACAGTTTGATTTAATTAG+TGG + chr3_4:48025664-48025683 None:intergenic 20.0%
!!! ATACACTTACGATAATTTTA+TGG + chr3_4:48025753-48025772 None:intergenic 20.0%
!! TTTTGTGACAATTGGATTAA+TGG - chr3_4:48019229-48019248 Msa0504090:intron 25.0%
! TTTGTGACAATTGGATTAAT+GGG - chr3_4:48019230-48019249 Msa0504090:intron 25.0%
!!! GTTTTGTTTTGTTTTGTGAT+AGG - chr3_4:48019276-48019295 Msa0504090:intron 25.0%
! ATGATACATTTACTTGGAAT+TGG - chr3_4:48019540-48019559 Msa0504090:intron 25.0%
! TGATACATTTACTTGGAATT+GGG - chr3_4:48019541-48019560 Msa0504090:intron 25.0%
! AATAATCATTTGTGTGTCAA+TGG - chr3_4:48019591-48019610 Msa0504090:intron 25.0%
! TGCTTTAGTTATAGCTATAA+TGG - chr3_4:48019673-48019692 Msa0504090:intron 25.0%
!!! GTTTTTTATGAAAACATACC+AGG + chr3_4:48019718-48019737 None:intergenic 25.0%
! GTCACATAAAGAAGTAAAAA+AGG + chr3_4:48020038-48020057 None:intergenic 25.0%
! TATTACAATTTCATTACCCT+TGG + chr3_4:48020177-48020196 None:intergenic 25.0%
! GATGATAATTATTTCAGCAA+TGG - chr3_4:48020325-48020344 Msa0504090:intron 25.0%
! ATTCAAATTTCCAATAGCAT+TGG + chr3_4:48020436-48020455 None:intergenic 25.0%
!! GAAGTGATTTGGATTTATAA+AGG + chr3_4:48020631-48020650 None:intergenic 25.0%
! AAATATGTCATACACTTTCA+TGG + chr3_4:48020934-48020953 None:intergenic 25.0%
!!! AAAATAGTTTTACACTGCTT+TGG - chr3_4:48021109-48021128 Msa0504090:CDS 25.0%
! AGGATACAACAAAATTCAAT+AGG + chr3_4:48021525-48021544 None:intergenic 25.0%
! ATGTTTGATTCTTCTTTACA+GGG + chr3_4:48021568-48021587 None:intergenic 25.0%
! AATGTTTGATTCTTCTTTAC+AGG + chr3_4:48021569-48021588 None:intergenic 25.0%
! TTTAATATGAAACTGCTTCA+CGG + chr3_4:48021597-48021616 None:intergenic 25.0%
!! AATCCAGAATTTAACTTACT+TGG + chr3_4:48021724-48021743 None:intergenic 25.0%
! AAGTTAAATTCTGGATTCAA+TGG - chr3_4:48021727-48021746 Msa0504090:intron 25.0%
! CAATCTAGAAAGAAAGAAAA+TGG + chr3_4:48022048-48022067 None:intergenic 25.0%
!!! AGCATCATATTTTAGCAATA+AGG + chr3_4:48022103-48022122 None:intergenic 25.0%
! TTTCTCCAAATACACTTATA+AGG - chr3_4:48022536-48022555 Msa0504090:intron 25.0%
! ATCAACCTTATAAGTGTATT+TGG + chr3_4:48022544-48022563 None:intergenic 25.0%
! CAATATATCACTGTGTAATT+GGG + chr3_4:48022711-48022730 None:intergenic 25.0%
! TCAATATATCACTGTGTAAT+TGG + chr3_4:48022712-48022731 None:intergenic 25.0%
!!! GTTTTATTTTGGAACTTTGT+TGG + chr3_4:48022770-48022789 None:intergenic 25.0%
! TTAACCACTTAGTGATTATT+TGG + chr3_4:48022844-48022863 None:intergenic 25.0%
! TGTTAGAATGTTTCAATAAC+AGG + chr3_4:48022952-48022971 None:intergenic 25.0%
!! TGTCAATTTTGAACTTTTGA+GGG + chr3_4:48023466-48023485 None:intergenic 25.0%
! TTTGCAGAAATATAGTTTGA+AGG - chr3_4:48023614-48023633 Msa0504090:intron 25.0%
! ATAGTTTGAAGGACTAATAT+AGG - chr3_4:48023625-48023644 Msa0504090:intron 25.0%
! TAGTTTGAAGGACTAATATA+GGG - chr3_4:48023626-48023645 Msa0504090:intron 25.0%
! AATGGTTTCTCTATAGATTA+GGG + chr3_4:48023714-48023733 None:intergenic 25.0%
! AAATGGTTTCTCTATAGATT+AGG + chr3_4:48023715-48023734 None:intergenic 25.0%
!! AAAAAGTGTAATCCTTCAAA+TGG + chr3_4:48023732-48023751 None:intergenic 25.0%
!! AACATGAAATTTGCTTTGAA+TGG - chr3_4:48024273-48024292 Msa0504090:CDS 25.0%
!! ACATGAAATTTGCTTTGAAT+GGG - chr3_4:48024274-48024293 Msa0504090:CDS 25.0%
!! CATCTAAAGTACCTATAATA+AGG + chr3_4:48024302-48024321 None:intergenic 25.0%
! CTTATTATAGGTACTTTAGA+TGG - chr3_4:48024300-48024319 Msa0504090:intron 25.0%
!!! CTGTATAAAATTTTGACAAC+AGG + chr3_4:48024616-48024635 None:intergenic 25.0%
!! CTGTTGTCAAAATTTTATAC+AGG - chr3_4:48024614-48024633 Msa0504090:CDS 25.0%
!!! CCGATACAAAATTTTAAAAG+TGG - chr3_4:48024663-48024682 Msa0504090:intron 25.0%
! TTAACCATAATAAACAGCTA+GGG + chr3_4:48025363-48025382 None:intergenic 25.0%
! TTTAACCATAATAAACAGCT+AGG + chr3_4:48025364-48025383 None:intergenic 25.0%
! TATTATGGTTAAAGTCAGTT+TGG - chr3_4:48025371-48025390 Msa0504090:intron 25.0%
! TTAGTAAAACTCTAGATGTA+TGG - chr3_4:48025450-48025469 Msa0504090:intron 25.0%
!!! ATTGATTTTAACTTCCAATC+TGG - chr3_4:48025488-48025507 Msa0504090:intron 25.0%
! ATTACAAATACCAATTTGGA+AGG + chr3_4:48026144-48026163 None:intergenic 25.0%
! TTCCAAATTGGTATTTGTAA+TGG - chr3_4:48026143-48026162 Msa0504090:intron 25.0%
GGAAAAAGAGAATCTATGTT+TGG + chr3_4:48018862-48018881 None:intergenic 30.0%
! TAACAATTTGATTAATGGGC+TGG - chr3_4:48019130-48019149 Msa0504090:CDS 30.0%
! GTTCAGATTTTTGTGACAAT+TGG - chr3_4:48019221-48019240 Msa0504090:intron 30.0%
TTTGTGATAGGAGAAAGATA+AGG - chr3_4:48019288-48019307 Msa0504090:intron 30.0%
GTTATAGCTATAATGGTCAT+TGG - chr3_4:48019680-48019699 Msa0504090:intron 30.0%
CAGGATAGCTTATATGAATA+CGG + chr3_4:48019813-48019832 None:intergenic 30.0%
ATCATACCAACAATTTGACT+TGG - chr3_4:48019976-48019995 Msa0504090:intron 30.0%
CAATACAAGTATACTAACCT+AGG + chr3_4:48020269-48020288 None:intergenic 30.0%
CTAGGTTAGTATACTTGTAT+TGG - chr3_4:48020267-48020286 Msa0504090:intron 30.0%
!! GTATACTTGTATTGGTTGTT+TGG - chr3_4:48020275-48020294 Msa0504090:intron 30.0%
! GATAAGTAGTAAGTTTGCTT+GGG + chr3_4:48020384-48020403 None:intergenic 30.0%
! TGATAAGTAGTAAGTTTGCT+TGG + chr3_4:48020385-48020404 None:intergenic 30.0%
GCAAACTTACTACTTATCAA+TGG - chr3_4:48020386-48020405 Msa0504090:intron 30.0%
AAGCTTTCATTATGAGCAAT+GGG + chr3_4:48020608-48020627 None:intergenic 30.0%
TCCAAATCACTTCATATCTA+TGG - chr3_4:48020638-48020657 Msa0504090:CDS 30.0%
ACCATAGATATGAAGTGATT+TGG + chr3_4:48020642-48020661 None:intergenic 30.0%
CTGCAAAGATTCATGTTAAA+AGG + chr3_4:48020704-48020723 None:intergenic 30.0%
! CTTTTAACATGAATCTTTGC+AGG - chr3_4:48020702-48020721 Msa0504090:CDS 30.0%
AACACTTAATTTACCTGCTT+GGG - chr3_4:48020792-48020811 Msa0504090:CDS 30.0%
AAACAGATAATCGCAAAAGA+AGG - chr3_4:48020847-48020866 Msa0504090:intron 30.0%
TTTACACTTACCTTCCATTA+GGG + chr3_4:48021071-48021090 None:intergenic 30.0%
ATTTACACTTACCTTCCATT+AGG + chr3_4:48021072-48021091 None:intergenic 30.0%
! GTGAATTTTGAATCTTGTTC+AGG - chr3_4:48021399-48021418 Msa0504090:intron 30.0%
ACTCCAAGTAAGTTAAATTC+TGG - chr3_4:48021718-48021737 Msa0504090:intron 30.0%
GTTTACTTATGGATGAAGAA+GGG - chr3_4:48021941-48021960 Msa0504090:CDS 30.0%
TATGATGCTATATCTTAACC+AGG - chr3_4:48022114-48022133 Msa0504090:CDS 30.0%
GAGTTTATTGAAGAGAAACA+AGG + chr3_4:48022274-48022293 None:intergenic 30.0%
TCTTCAATAAACTCAGTGAA+AGG - chr3_4:48022280-48022299 Msa0504090:CDS 30.0%
AGTGTATTTGGAGAAATTAG+AGG + chr3_4:48022532-48022551 None:intergenic 30.0%
TCAACCATGAAAAAACTAGA+TGG + chr3_4:48022585-48022604 None:intergenic 30.0%
ACACAGTGATATATTGAAGT+CGG - chr3_4:48022715-48022734 Msa0504090:intron 30.0%
TAAGCCAAATAATCACTAAG+TGG - chr3_4:48022837-48022856 Msa0504090:CDS 30.0%
AGTGGTTAAAAACTGATAAG+TGG - chr3_4:48022855-48022874 Msa0504090:CDS 30.0%
GTGGTTAAAAACTGATAAGT+GGG - chr3_4:48022856-48022875 Msa0504090:CDS 30.0%
! GAATGTCAAATAGAGTATCA+GGG + chr3_4:48023107-48023126 None:intergenic 30.0%
! TGAATGTCAAATAGAGTATC+AGG + chr3_4:48023108-48023127 None:intergenic 30.0%
GCAATATTATCCTATGTTCA+AGG + chr3_4:48023282-48023301 None:intergenic 30.0%
!! AATGGACTAATTTGATGACA+GGG + chr3_4:48023389-48023408 None:intergenic 30.0%
!! TAATGGACTAATTTGATGAC+AGG + chr3_4:48023390-48023409 None:intergenic 30.0%
!!! GGCAACTCTTCATTTTTTAA+TGG + chr3_4:48023407-48023426 None:intergenic 30.0%
! GTGTCAATTTTGAACTTTTG+AGG + chr3_4:48023467-48023486 None:intergenic 30.0%
TCTATAGAGAAACCATTTGA+AGG - chr3_4:48023717-48023736 Msa0504090:CDS 30.0%
! TTTCAACTTTCTGAAAGCAA+AGG + chr3_4:48024024-48024043 None:intergenic 30.0%
GATATGACAATTTGTGAACA+AGG + chr3_4:48024064-48024083 None:intergenic 30.0%
TGTTCACAAATTGTCATATC+TGG - chr3_4:48024064-48024083 Msa0504090:intron 30.0%
TGTGCCAAATTACAATGTAT+CGG - chr3_4:48024173-48024192 Msa0504090:CDS 30.0%
! AATAACCAAACAAGCTCTAA+GGG - chr3_4:48024737-48024756 Msa0504090:intron 30.0%
! TTGTGATTTGAAGTTCAAAC+CGG - chr3_4:48025116-48025135 Msa0504090:intron 30.0%
AAGAGGCAAAGAAGTTTATT+AGG - chr3_4:48025151-48025170 Msa0504090:intron 30.0%
CAAAGAAGTTTATTAGGAGT+GGG - chr3_4:48025157-48025176 Msa0504090:intron 30.0%
AAAGAAGTTTATTAGGAGTG+GGG - chr3_4:48025158-48025177 Msa0504090:intron 30.0%
AAAAAGTAGACGAAGCATAT+TGG - chr3_4:48025298-48025317 Msa0504090:intron 30.0%
ACTAAAAGGAGAAAATGTGA+GGG + chr3_4:48025335-48025354 None:intergenic 30.0%
AACTAAAAGGAGAAAATGTG+AGG + chr3_4:48025336-48025355 None:intergenic 30.0%
AAATCAACTTCAACACTCTA+CGG + chr3_4:48025409-48025428 None:intergenic 30.0%
!! TAGTTTGGAAATGATTTGCT+TGG + chr3_4:48025594-48025613 None:intergenic 30.0%
! TTTTGCTTCAGAAAAGTGAT+AGG + chr3_4:48025704-48025723 None:intergenic 30.0%
!!! GTTTTTTGGTATGTTTTGCA+TGG - chr3_4:48025778-48025797 Msa0504090:intron 30.0%
TATACTTCTCATGAATGCAA+GGG + chr3_4:48025952-48025971 None:intergenic 30.0%
ATATACTTCTCATGAATGCA+AGG + chr3_4:48025953-48025972 None:intergenic 30.0%
GTCCATTACAAATACCAATT+TGG + chr3_4:48026148-48026167 None:intergenic 30.0%
TTTGAAGGAATGGTATTGCT+AGG + chr3_4:48018822-48018841 None:intergenic 35.0%
CGTGAAGATATTTGAAGGAA+TGG + chr3_4:48018832-48018851 None:intergenic 35.0%
GCATACGTGAAGATATTTGA+AGG + chr3_4:48018837-48018856 None:intergenic 35.0%
!! TTTTTCTCTTGGGTTGCTTT+TGG - chr3_4:48019167-48019186 Msa0504090:CDS 35.0%
!!! TTTTCTCTTGGGTTGCTTTT+GGG - chr3_4:48019168-48019187 Msa0504090:CDS 35.0%
! ATCACCATTAGTCTCTTCTA+TGG + chr3_4:48019330-48019349 None:intergenic 35.0%
ATAGAAGAGACTAATGGTGA+TGG - chr3_4:48019329-48019348 Msa0504090:intron 35.0%
ATGTTAGAAGCAATCTCATC+AGG + chr3_4:48019410-48019429 None:intergenic 35.0%
AACTTGAAAGGTGAAAAGTG+AGG + chr3_4:48019455-48019474 None:intergenic 35.0%
TGTTCAAGCTCAAACTTGAA+AGG + chr3_4:48019467-48019486 None:intergenic 35.0%
CGTATTCATATAAGCTATCC+TGG - chr3_4:48019811-48019830 Msa0504090:CDS 35.0%
! ACTGTTTTCAGCTTATTTCC+AGG + chr3_4:48019832-48019851 None:intergenic 35.0%
CAGTAACCAAGTCAAATTGT+TGG + chr3_4:48019985-48020004 None:intergenic 35.0%
CAACTTCAGTCACATTAACT+TGG - chr3_4:48020086-48020105 Msa0504090:intron 35.0%
!!! CAAGTTGCGATTCGTTTTTT+AGG - chr3_4:48020116-48020135 Msa0504090:intron 35.0%
TAGGACTTAAATCAAATGCG+AGG + chr3_4:48020250-48020269 None:intergenic 35.0%
! TCGCATTTGATTTAAGTCCT+AGG - chr3_4:48020249-48020268 Msa0504090:intron 35.0%
!! CTTGTATTGGTTGTTTGGAT+AGG - chr3_4:48020280-48020299 Msa0504090:intron 35.0%
TTATCAATGGAGTTCCTTCA+AGG - chr3_4:48020399-48020418 Msa0504090:intron 35.0%
!! ATTTCCAATAGCATTGGTCA+AGG + chr3_4:48020430-48020449 None:intergenic 35.0%
! GCAACTTTTTATTACCTGCT+CGG + chr3_4:48020517-48020536 None:intergenic 35.0%
CAATCTCTCTTCTTTAGTAC+TGG - chr3_4:48020547-48020566 Msa0504090:intron 35.0%
GAAGCTTTCATTATGAGCAA+TGG + chr3_4:48020609-48020628 None:intergenic 35.0%
!! GTAATCGTGTTTTTATACGC+TGG + chr3_4:48020677-48020696 None:intergenic 35.0%
ACATGAATCTTTGCAGGAAA+AGG - chr3_4:48020708-48020727 Msa0504090:CDS 35.0%
! AGGTAAATTAAGTGTTGCCA+TGG + chr3_4:48020788-48020807 None:intergenic 35.0%
CAACACTTAATTTACCTGCT+TGG - chr3_4:48020791-48020810 Msa0504090:CDS 35.0%
ACACTTAATTTACCTGCTTG+GGG - chr3_4:48020793-48020812 Msa0504090:CDS 35.0%
TCTGTTTAAATAGTCCGTAC+CGG + chr3_4:48020834-48020853 None:intergenic 35.0%
TTGTACCCTATCAGATTCTT+TGG - chr3_4:48021030-48021049 Msa0504090:intron 35.0%
! TTTTACACTGCTTTGGTACA+TGG - chr3_4:48021116-48021135 Msa0504090:CDS 35.0%
CATGATCTTTGACAATGAAC+TGG + chr3_4:48021430-48021449 None:intergenic 35.0%
AGAGGTGATAATCATGATTG+AGG + chr3_4:48021545-48021564 None:intergenic 35.0%
!! ATTTGTTCGGTTTTGTATCC+TGG - chr3_4:48021632-48021651 Msa0504090:intron 35.0%
!! TTTGTTCGGTTTTGTATCCT+GGG - chr3_4:48021633-48021652 Msa0504090:intron 35.0%
AATTACAGGACATCATTTCC+CGG - chr3_4:48021812-48021831 Msa0504090:intron 35.0%
!! CATCAACTCTGGTATTGATA+GGG + chr3_4:48021920-48021939 None:intergenic 35.0%
ATAAGTAAACGCATCAACTC+TGG + chr3_4:48021931-48021950 None:intergenic 35.0%
!! AGAGTTGATGCGTTTACTTA+TGG - chr3_4:48021930-48021949 Msa0504090:CDS 35.0%
CGTTTACTTATGGATGAAGA+AGG - chr3_4:48021940-48021959 Msa0504090:CDS 35.0%
ATTAGTGTAAGCAATTGTCC+TGG + chr3_4:48022135-48022154 None:intergenic 35.0%
TATCATTGTAGTGAACTGCA+TGG + chr3_4:48022340-48022359 None:intergenic 35.0%
AATGATAAGTAAAACCCGAC+TGG - chr3_4:48022353-48022372 Msa0504090:intron 35.0%
AAGACATCAATAGGGTAAGA+TGG + chr3_4:48022505-48022524 None:intergenic 35.0%
GAGGATAGAAGACATCAATA+GGG + chr3_4:48022513-48022532 None:intergenic 35.0%
AGAGGATAGAAGACATCAAT+AGG + chr3_4:48022514-48022533 None:intergenic 35.0%
!!! GACACCATCTAGTTTTTTCA+TGG - chr3_4:48022578-48022597 Msa0504090:CDS 35.0%
CTCCATTCACCTATAATAGA+TGG + chr3_4:48022685-48022704 None:intergenic 35.0%
CAAAAATTGATCCATCTTCG+AGG + chr3_4:48022806-48022825 None:intergenic 35.0%
ACATTCTAACATTTGATCCC+TGG - chr3_4:48022961-48022980 Msa0504090:intron 35.0%
GGATATTGAGAGAGATAATG+TGG + chr3_4:48023368-48023387 None:intergenic 35.0%
!! GAACTTTTGAGGGACTAATT+TGG + chr3_4:48023456-48023475 None:intergenic 35.0%
AGTAATGATACCGACACAAA+GGG + chr3_4:48023499-48023518 None:intergenic 35.0%
AAGTAATGATACCGACACAA+AGG + chr3_4:48023500-48023519 None:intergenic 35.0%
! AAATCTTTGAGAGGCTAACT+TGG - chr3_4:48023655-48023674 Msa0504090:CDS 35.0%
! TTGTACTTTTCCGTTCTTCA+GGG + chr3_4:48023834-48023853 None:intergenic 35.0%
CGACTTACACAAATGCTAAA+CGG - chr3_4:48023890-48023909 Msa0504090:intron 35.0%
TATTGTAAACAGTGATCCTG+TGG - chr3_4:48023942-48023961 Msa0504090:intron 35.0%
TCACAAATTGTCATATCTGG+TGG - chr3_4:48024067-48024086 Msa0504090:intron 35.0%
!! AGCTTGTTCAAACCTTTTTC+AGG - chr3_4:48024143-48024162 Msa0504090:CDS 35.0%
! AAATTACAATGTATCGGTGG+CGG - chr3_4:48024179-48024198 Msa0504090:CDS 35.0%
! TTGAATGGGTGCCTTATTAT+AGG - chr3_4:48024288-48024307 Msa0504090:intron 35.0%
TACTTTAGATGGAGCTAATG+TGG - chr3_4:48024311-48024330 Msa0504090:intron 35.0%
!!! GAGGAGAATTTTTTCCTCTT+TGG - chr3_4:48024354-48024373 Msa0504090:intron 35.0%
CAATAACCAAACAAGCTCTA+AGG - chr3_4:48024736-48024755 Msa0504090:intron 35.0%
GTGATAGAGAGAAGATGTAA+GGG + chr3_4:48024953-48024972 None:intergenic 35.0%
TGTGATAGAGAGAAGATGTA+AGG + chr3_4:48024954-48024973 None:intergenic 35.0%
GCAAAGAAGTTTATTAGGAG+TGG - chr3_4:48025156-48025175 Msa0504090:intron 35.0%
CTTCCAATGAATCAAGCAAT+GGG + chr3_4:48025206-48025225 None:intergenic 35.0%
GATTCATTGGAAGGAAATTC+TGG - chr3_4:48025213-48025232 Msa0504090:intron 35.0%
! TTGGAAGGAAATTCTGGTTA+TGG - chr3_4:48025219-48025238 Msa0504090:intron 35.0%
TTCTCCCTAGCTGTTTATTA+TGG - chr3_4:48025356-48025375 Msa0504090:intron 35.0%
ACTTCTAGTCAAATCCAGAT+TGG + chr3_4:48025505-48025524 None:intergenic 35.0%
! AGTGATAGGTGATGTTACTT+TGG + chr3_4:48025690-48025709 None:intergenic 35.0%
! ATGTCTATCTTAAGTACTGC+TGG - chr3_4:48025828-48025847 Msa0504090:intron 35.0%
! TGTCTATCTTAAGTACTGCT+GGG - chr3_4:48025829-48025848 Msa0504090:intron 35.0%
CTCAGTATGCTAAGGAAATT+TGG - chr3_4:48025883-48025902 Msa0504090:intron 35.0%
GATGTATCCAGCTGAAATTA+TGG + chr3_4:48025930-48025949 None:intergenic 35.0%
! ATTTGCTTAGCCTTCCAAAT+TGG - chr3_4:48026131-48026150 Msa0504090:intron 35.0%
!!! ACTGCTACTTTTCTCTCAAC+TGG - chr3_4:48018937-48018956 Msa0504090:three_prime_UTR 40.0%
!!! CTGCTACTTTTCTCTCAACT+GGG - chr3_4:48018938-48018957 Msa0504090:three_prime_UTR 40.0%
GGTTCCATAGAAGAGACTAA+TGG - chr3_4:48019323-48019342 Msa0504090:intron 40.0%
!! TCATCAGGTTTTTCAGCCAA+TGG + chr3_4:48019395-48019414 None:intergenic 40.0%
AGTGAGGACTATATTGAGCA+TGG + chr3_4:48019439-48019458 None:intergenic 40.0%
!! TAGAAGTGCACTTTTGCTGT+AGG - chr3_4:48019627-48019646 Msa0504090:intron 40.0%
!!! CATTGGTGATGTTTTTGACC+TGG - chr3_4:48019697-48019716 Msa0504090:intron 40.0%
AACTTGATCCTACAGCTTTC+TGG + chr3_4:48019911-48019930 None:intergenic 40.0%
TTTGTACGACAGAAAGCTGT+AGG - chr3_4:48019949-48019968 Msa0504090:intron 40.0%
ACTTGAAGAAATAACCGAGC+AGG - chr3_4:48020500-48020519 Msa0504090:intron 40.0%
TTCTTGCTTTCTGGATTCCA+TGG - chr3_4:48020768-48020787 Msa0504090:CDS 40.0%
CACTTAATTTACCTGCTTGG+GGG - chr3_4:48020794-48020813 Msa0504090:CDS 40.0%
GATAATCGCAAAAGAAGGTC+AGG - chr3_4:48020852-48020871 Msa0504090:intron 40.0%
CAAACAGAAGTTTAGCCCTT+GGG - chr3_4:48020987-48021006 Msa0504090:intron 40.0%
!! TTGGTTTGGTATCCAGGAAT+TGG + chr3_4:48021251-48021270 None:intergenic 40.0%
TGATTCTTCTTTACAGGGAG+AGG + chr3_4:48021563-48021582 None:intergenic 40.0%
!! TTGTTCGGTTTTGTATCCTG+GGG - chr3_4:48021634-48021653 Msa0504090:intron 40.0%
! TAGAAGTTTTCCACCTTCTG+TGG + chr3_4:48021663-48021682 None:intergenic 40.0%
CAGAAGGTGGAAAACTTCTA+CGG - chr3_4:48021663-48021682 Msa0504090:intron 40.0%
AAATTCTGGATTCAATGGCG+TGG - chr3_4:48021732-48021751 Msa0504090:intron 40.0%
TCTCACCTTCAACCAATTAC+AGG - chr3_4:48021798-48021817 Msa0504090:intron 40.0%
GATGTCCTGTAATTGGTTGA+AGG + chr3_4:48021806-48021825 None:intergenic 40.0%
GGGAAATGATGTCCTGTAAT+TGG + chr3_4:48021813-48021832 None:intergenic 40.0%
AATTGTACAGCAACCTTCGT+CGG + chr3_4:48021880-48021899 None:intergenic 40.0%
!! AACTCTGGTATTGATAGGGT+CGG + chr3_4:48021916-48021935 None:intergenic 40.0%
!! GCATCAACTCTGGTATTGAT+AGG + chr3_4:48021921-48021940 None:intergenic 40.0%
AATGGTCTCAGTCTGTAATG+TGG - chr3_4:48022183-48022202 Msa0504090:CDS 40.0%
TCTATGATTTCCATGTGACG+AGG + chr3_4:48022218-48022237 None:intergenic 40.0%
! ACTTTCCAACATGCGCATTT+TGG - chr3_4:48022389-48022408 Msa0504090:intron 40.0%
ATTGTCCAAAATGCGCATGT+TGG + chr3_4:48022397-48022416 None:intergenic 40.0%
AAATTTGCCATCCGAACAAC+TGG + chr3_4:48022432-48022451 None:intergenic 40.0%
CATGTTGGGCCATCTATTAT+AGG - chr3_4:48022673-48022692 Msa0504090:intron 40.0%
GGCCATCTATTATAGGTGAA+TGG - chr3_4:48022680-48022699 Msa0504090:intron 40.0%
! GTGATTATTTGGCTTAGCTC+AGG + chr3_4:48022833-48022852 None:intergenic 40.0%
ACCTGTCAGTAAGTCAAGAT+CGG + chr3_4:48022885-48022904 None:intergenic 40.0%
TTCATTGTCAGCAAACTGCA+GGG + chr3_4:48022995-48023014 None:intergenic 40.0%
ACTGTACTCTATCATGCAGT+GGG + chr3_4:48023220-48023239 None:intergenic 40.0%
AACTGTACTCTATCATGCAG+TGG + chr3_4:48023221-48023240 None:intergenic 40.0%
! ATAGCTCTGTCCTTGAACAT+AGG - chr3_4:48023269-48023288 Msa0504090:intron 40.0%
GGCAACACTCAAATCTTTGA+AGG + chr3_4:48023347-48023366 None:intergenic 40.0%
CCAAATTCATCCCTTTGTGT+CGG - chr3_4:48023486-48023505 Msa0504090:intron 40.0%
GGGACACTTAAATCTTTGAG+AGG - chr3_4:48023646-48023665 Msa0504090:CDS 40.0%
! GTTGTACTTTTCCGTTCTTC+AGG + chr3_4:48023835-48023854 None:intergenic 40.0%
TTCAAGTAGCTATTGACCAC+AGG + chr3_4:48023961-48023980 None:intergenic 40.0%
TGTGGTCAATAGCTACTTGA+AGG - chr3_4:48023960-48023979 Msa0504090:CDS 40.0%
CAAATTGTCATATCTGGTGG+TGG - chr3_4:48024070-48024089 Msa0504090:intron 40.0%
GCACAAACACAACCTGAAAA+AGG + chr3_4:48024158-48024177 None:intergenic 40.0%
GCCAAATTACAATGTATCGG+TGG - chr3_4:48024176-48024195 Msa0504090:CDS 40.0%
GCCACCGATACATTGTAATT+TGG + chr3_4:48024180-48024199 None:intergenic 40.0%
ATGGAGCTAATGTGGAAATC+AGG - chr3_4:48024319-48024338 Msa0504090:intron 40.0%
TGGAGCTAATGTGGAAATCA+GGG - chr3_4:48024320-48024339 Msa0504090:intron 40.0%
ATCCTGAAGTTCAAGGAACT+AGG + chr3_4:48024561-48024580 None:intergenic 40.0%
CAAACAGATCCTGAAGTTCA+AGG + chr3_4:48024568-48024587 None:intergenic 40.0%
CTTGAACTTCAGGATCTGTT+TGG - chr3_4:48024566-48024585 Msa0504090:CDS 40.0%
AGAAGATGTAAGGGAAGCTA+GGG + chr3_4:48024944-48024963 None:intergenic 40.0%
TTCTTTGCCTCTTCAAATCG+AGG + chr3_4:48025144-48025163 None:intergenic 40.0%
! TTTATTAGGAGTGGGGTGTT+TGG - chr3_4:48025165-48025184 Msa0504090:intron 40.0%
CAACCCATTGCTTGATTCAT+TGG - chr3_4:48025200-48025219 Msa0504090:intron 40.0%
CCTTCCAATGAATCAAGCAA+TGG + chr3_4:48025207-48025226 None:intergenic 40.0%
CCATTGCTTGATTCATTGGA+AGG - chr3_4:48025204-48025223 Msa0504090:intron 40.0%
CGTGGTGATTACTTTCTTGT+TGG - chr3_4:48025243-48025262 Msa0504090:intron 40.0%
CAGCTAGGGAGAAAACTAAA+AGG + chr3_4:48025349-48025368 None:intergenic 40.0%
GACAATTGCTCAGTATGCTA+AGG - chr3_4:48025875-48025894 Msa0504090:intron 40.0%
CCAGCTGAAATTATGGTACA+CGG + chr3_4:48025923-48025942 None:intergenic 40.0%
CAAGTCTCATTCTGTTTCAG+TGG - chr3_4:48026167-48026186 Msa0504090:intron 40.0%
!! GAAGAGACTAATGGTGATGG+TGG - chr3_4:48019332-48019351 Msa0504090:intron 45.0%
ACCTGCTGTTGCAAATCCAT+TGG - chr3_4:48019376-48019395 Msa0504090:intron 45.0%
AGACAGTTTGGGAGAGCTTA+TGG + chr3_4:48019878-48019897 None:intergenic 45.0%
GCGTACTTGTGAGACAGTTT+GGG + chr3_4:48019889-48019908 None:intergenic 45.0%
AAGGATGCAGCACTAGGAAA+TGG - chr3_4:48020727-48020746 Msa0504090:CDS 45.0%
! TAGGAAATGGTGGTCTTGGT+CGG - chr3_4:48020740-48020759 Msa0504090:CDS 45.0%
AATTTACCTGCTTGGGGGTA+TGG - chr3_4:48020799-48020818 Msa0504090:CDS 45.0%
!! TATGGTTTGAGGTACCGGTA+CGG - chr3_4:48020817-48020836 Msa0504090:CDS 45.0%
AATCGCAAAAGAAGGTCAGG+AGG - chr3_4:48020855-48020874 Msa0504090:intron 45.0%
CCAAGGGCTAAACTTCTGTT+TGG + chr3_4:48020989-48021008 None:intergenic 45.0%
CCAAACAGAAGTTTAGCCCT+TGG - chr3_4:48020986-48021005 Msa0504090:intron 45.0%
TTAGCCCTTGGGAAATTGTG+AGG - chr3_4:48020998-48021017 Msa0504090:intron 45.0%
CCTGGCCAAAGAATCTGATA+GGG + chr3_4:48021038-48021057 None:intergenic 45.0%
ACCTGGCCAAAGAATCTGAT+AGG + chr3_4:48021039-48021058 None:intergenic 45.0%
TCGAGGTTAACCCTAATGGA+AGG - chr3_4:48021058-48021077 Msa0504090:CDS 45.0%
TATGCCAGCCGAAAATGGAT+TGG - chr3_4:48021191-48021210 Msa0504090:intron 45.0%
! CTTCTCCGCCAATCCATTTT+CGG + chr3_4:48021202-48021221 None:intergenic 45.0%
GCTTATGATGTGCCAATTCC+TGG - chr3_4:48021236-48021255 Msa0504090:intron 45.0%
!! GTGTTCTTGGTTTGGTATCC+AGG + chr3_4:48021257-48021276 None:intergenic 45.0%
! GACTGATGGTGTTCTTGGTT+TGG + chr3_4:48021265-48021284 None:intergenic 45.0%
!! ACTCTGGTATTGATAGGGTC+GGG + chr3_4:48021915-48021934 None:intergenic 45.0%
CTTATGGATGAAGAAGGGCT+TGG - chr3_4:48021946-48021965 Msa0504090:CDS 45.0%
AGACCATTTCTCCAGTGCTT+CGG + chr3_4:48022171-48022190 None:intergenic 45.0%
GAAATTGCTTCCTCGTCACA+TGG - chr3_4:48022205-48022224 Msa0504090:CDS 45.0%
TTCACTCTCAAGATCCAGTC+GGG + chr3_4:48022370-48022389 None:intergenic 45.0%
GTTCACTCTCAAGATCCAGT+CGG + chr3_4:48022371-48022390 None:intergenic 45.0%
TCGGATGGCAAATTTGTGTG+TGG - chr3_4:48022437-48022456 Msa0504090:intron 45.0%
ATGGCATTACACCTCGAAGA+TGG - chr3_4:48022792-48022811 Msa0504090:CDS 45.0%
ACCGATCTTGACTTACTGAC+AGG - chr3_4:48022881-48022900 Msa0504090:intron 45.0%
!! GTTGCATGTAGAGAAGCATC+CGG + chr3_4:48022924-48022943 None:intergenic 45.0%
ACTGCAGGGAAAAAACACCA+GGG + chr3_4:48022981-48023000 None:intergenic 45.0%
AACTGCAGGGAAAAAACACC+AGG + chr3_4:48022982-48023001 None:intergenic 45.0%
CTTCATTGTCAGCAAACTGC+AGG + chr3_4:48022996-48023015 None:intergenic 45.0%
ATGAAGATCTGCAAGCAGAG+TGG - chr3_4:48023010-48023029 Msa0504090:intron 45.0%
!! AGTACGTTCTGAAGGTGACA+GGG - chr3_4:48023070-48023089 Msa0504090:CDS 45.0%
CCGACACAAAGGGATGAATT+TGG + chr3_4:48023489-48023508 None:intergenic 45.0%
CACTGTCATGATTGGAGGAA+AGG - chr3_4:48023861-48023880 Msa0504090:intron 45.0%
TGCTAAACGGATAGTCAAGC+TGG - chr3_4:48023903-48023922 Msa0504090:intron 45.0%
GTCAAGCTGGTCAATGATGT+TGG - chr3_4:48023916-48023935 Msa0504090:intron 45.0%
TCCCAACATATTAGTACCGC+AGG - chr3_4:48024228-48024247 Msa0504090:CDS 45.0%
GCCTGCGGTACTAATATGTT+GGG + chr3_4:48024232-48024251 None:intergenic 45.0%
TGCCTGCGGTACTAATATGT+TGG + chr3_4:48024233-48024252 None:intergenic 45.0%
ACATATTAGTACCGCAGGCA+TGG - chr3_4:48024233-48024252 Msa0504090:CDS 45.0%
GTGGAAATCAGGGAAGAGAT+CGG - chr3_4:48024330-48024349 Msa0504090:intron 45.0%
CACCTAGTTCCTTGAACTTC+AGG - chr3_4:48024556-48024575 Msa0504090:CDS 45.0%
! ACTGACCCTTAGAGCTTGTT+TGG + chr3_4:48024745-48024764 None:intergenic 45.0%
GAGAAGATGTAAGGGAAGCT+AGG + chr3_4:48024945-48024964 None:intergenic 45.0%
! GGAAATTCTGGTTATGGTCG+TGG - chr3_4:48025225-48025244 Msa0504090:intron 45.0%
TTATGACTTCCCAAGCTACG+TGG - chr3_4:48025266-48025285 Msa0504090:intron 45.0%
CATGGTGCAGTGACAAGAAA+AGG - chr3_4:48025796-48025815 Msa0504090:intron 45.0%
! ATCTTAAGTACTGCTGGGAG+TGG - chr3_4:48025834-48025853 Msa0504090:intron 45.0%
! TCTTAAGTACTGCTGGGAGT+GGG - chr3_4:48025835-48025854 Msa0504090:intron 45.0%
CCGTGTACCATAATTTCAGC+TGG - chr3_4:48025920-48025939 Msa0504090:intron 45.0%
AGCAGATGCATTGAGAGAGA+GGG + chr3_4:48026050-48026069 None:intergenic 45.0%
AAGCAGATGCATTGAGAGAG+AGG + chr3_4:48026051-48026070 None:intergenic 45.0%
!!! TTTTTAATTAAAAAGTATTA+TGG + chr3_4:48024699-48024718 None:intergenic 5.0%
! GCCAATGGATTTGCAACAGC+AGG + chr3_4:48019380-48019399 None:intergenic 50.0%
TGTTCGTGATCGTCTCGTTC+AGG - chr3_4:48019511-48019530 Msa0504090:intron 50.0%
GGCGTACTTGTGAGACAGTT+TGG + chr3_4:48019890-48019909 None:intergenic 50.0%
CAAGTACGCCAGAAAGCTGT+AGG - chr3_4:48019900-48019919 Msa0504090:intron 50.0%
CGAGCCTTGACCAATGCTAT+TGG - chr3_4:48020423-48020442 Msa0504090:intron 50.0%
GCTGATGCTTTGCGCAAGTT+CGG - chr3_4:48020471-48020490 Msa0504090:intron 50.0%
CAGGAAAAGGATGCAGCACT+AGG - chr3_4:48020721-48020740 Msa0504090:CDS 50.0%
GATGCAGCACTAGGAAATGG+TGG - chr3_4:48020730-48020749 Msa0504090:CDS 50.0%
GCACTAGGAAATGGTGGTCT+TGG - chr3_4:48020736-48020755 Msa0504090:CDS 50.0%
! TCGGCTTGCTTCTTGCTTTC+TGG - chr3_4:48020759-48020778 Msa0504090:CDS 50.0%
CGTGCCTCACAATTTCCCAA+GGG + chr3_4:48021005-48021024 None:intergenic 50.0%
TCGTGCCTCACAATTTCCCA+AGG + chr3_4:48021006-48021025 None:intergenic 50.0%
CCCTATCAGATTCTTTGGCC+AGG - chr3_4:48021035-48021054 Msa0504090:intron 50.0%
CATTAGGGTTAACCTCGACC+TGG + chr3_4:48021056-48021075 None:intergenic 50.0%
CAGGTCGAGGTTAACCCTAA+TGG - chr3_4:48021054-48021073 Msa0504090:CDS 50.0%
GTGTGTATGCCAGCCGAAAA+TGG - chr3_4:48021186-48021205 Msa0504090:intron 50.0%
! GCGAAGACTGATGGTGTTCT+TGG + chr3_4:48021270-48021289 None:intergenic 50.0%
! CACAAGCTTTAGCTTCCCAG+AGG + chr3_4:48021292-48021311 None:intergenic 50.0%
GGACATCATTTCCCGGTTCA+AGG - chr3_4:48021819-48021838 Msa0504090:intron 50.0%
TCATTTCCCGGTTCAAGGAG+AGG - chr3_4:48021824-48021843 Msa0504090:CDS 50.0%
AGCAACCTTCGTCGGAAACT+CGG + chr3_4:48021872-48021891 None:intergenic 50.0%
!! TGGTATTGATAGGGTCGGGT+GGG + chr3_4:48021911-48021930 None:intergenic 50.0%
TGGATGAAGAAGGGCTTGGA+TGG - chr3_4:48021950-48021969 Msa0504090:CDS 50.0%
GGATGAAGAAGGGCTTGGAT+GGG - chr3_4:48021951-48021970 Msa0504090:CDS 50.0%
GCTTGGATGGGATGAAGCAT+GGG - chr3_4:48021963-48021982 Msa0504090:CDS 50.0%
!! GCAGAACTTGTTGCGTTGTG+TGG - chr3_4:48022010-48022029 Msa0504090:intron 50.0%
ACCATTTCTCCAGTGCTTCG+GGG + chr3_4:48022169-48022188 None:intergenic 50.0%
GACCATTTCTCCAGTGCTTC+GGG + chr3_4:48022170-48022189 None:intergenic 50.0%
ATCCCCAGAAGCCAGTTGTT+CGG - chr3_4:48022418-48022437 Msa0504090:intron 50.0%
! ATCCGAACAACTGGCTTCTG+GGG + chr3_4:48022423-48022442 None:intergenic 50.0%
! CATCCGAACAACTGGCTTCT+GGG + chr3_4:48022424-48022443 None:intergenic 50.0%
CTTACTGACAGGTCTTCGAG+AGG - chr3_4:48022892-48022911 Msa0504090:intron 50.0%
AGAGTGGTCGTCTGCAAAGA+TGG - chr3_4:48023026-48023045 Msa0504090:CDS 50.0%
GATGGCTAATAAGCAGCGCT+TGG - chr3_4:48023044-48023063 Msa0504090:CDS 50.0%
CTTGGCACAGTACGTTCTGA+AGG - chr3_4:48023062-48023081 Msa0504090:CDS 50.0%
!! CAGTACGTTCTGAAGGTGAC+AGG - chr3_4:48023069-48023088 Msa0504090:CDS 50.0%
!! GTACGTTCTGAAGGTGACAG+GGG - chr3_4:48023071-48023090 Msa0504090:CDS 50.0%
AGCGTATCCACGAGTACAAG+AGG - chr3_4:48023133-48023152 Msa0504090:CDS 50.0%
AGGAGATGAGCCCTGAAGAA+CGG - chr3_4:48023821-48023840 Msa0504090:intron 50.0%
ACTGCACGCACTGTCATGAT+TGG - chr3_4:48023853-48023872 Msa0504090:intron 50.0%
! TTACAATGTATCGGTGGCGG+AGG - chr3_4:48024182-48024201 Msa0504090:CDS 50.0%
GTTGGGATAGCTCACTTCCT+GGG + chr3_4:48024215-48024234 None:intergenic 50.0%
TGTTGGGATAGCTCACTTCC+TGG + chr3_4:48024216-48024235 None:intergenic 50.0%
AATCAGGGAAGAGATCGGTG+AGG - chr3_4:48024335-48024354 Msa0504090:intron 50.0%
! TTTCCTCTTTGGTGCGACAG+CGG - chr3_4:48024365-48024384 Msa0504090:intron 50.0%
TGATGTACCTCGACTGAGGA+AGG - chr3_4:48024389-48024408 Msa0504090:intron 50.0%
TCTCTTTCCTTCCTCAGTCG+AGG + chr3_4:48024399-48024418 None:intergenic 50.0%
TCGACTGAGGAAGGAAAGAG+AGG - chr3_4:48024398-48024417 Msa0504090:intron 50.0%
CTGAGGAAGGAAAGAGAGGA+TGG - chr3_4:48024402-48024421 Msa0504090:intron 50.0%
GAAGGAAAGAGAGGATGGAC+TGG - chr3_4:48024407-48024426 Msa0504090:intron 50.0%
! ACCGGATCCTCGATTTGAAG+AGG - chr3_4:48025134-48025153 Msa0504090:intron 50.0%
GCCTCTTCAAATCGAGGATC+CGG + chr3_4:48025138-48025157 None:intergenic 50.0%
GGTGCAGTGACAAGAAAAGG+TGG - chr3_4:48025799-48025818 Msa0504090:intron 50.0%
TGGTCAAGGCTCGACCTTGA+AGG + chr3_4:48020416-48020435 None:intergenic 55.0%
CTCAAACCATACCCCCAAGC+AGG + chr3_4:48020808-48020827 None:intergenic 55.0%
! CTGCTTGGGGGTATGGTTTG+AGG - chr3_4:48020806-48020825 Msa0504090:CDS 55.0%
! GGGGGTATGGTTTGAGGTAC+CGG - chr3_4:48020812-48020831 Msa0504090:CDS 55.0%
AGGTCAGGAGGAAGTTGCTG+AGG - chr3_4:48020867-48020886 Msa0504090:intron 55.0%
AGGAGGAAGTTGCTGAGGAC+TGG - chr3_4:48020872-48020891 Msa0504090:intron 55.0%
CAGATTCTTTGGCCAGGTCG+AGG - chr3_4:48021041-48021060 Msa0504090:intron 55.0%
!! GCCAGCCGAAAATGGATTGG+CGG - chr3_4:48021194-48021213 Msa0504090:intron 55.0%
! TCCGCCAATCCATTTTCGGC+TGG + chr3_4:48021198-48021217 None:intergenic 55.0%
ACACCATCAGTCTTCGCCTC+TGG - chr3_4:48021273-48021292 Msa0504090:intron 55.0%
CACCATCAGTCTTCGCCTCT+GGG - chr3_4:48021274-48021293 Msa0504090:intron 55.0%
TTCCCAGAGGCGAAGACTGA+TGG + chr3_4:48021279-48021298 None:intergenic 55.0%
GCTTCACTCACGAGCTCAAC+AGG - chr3_4:48021367-48021386 Msa0504090:intron 55.0%
TATCCTGGGGATGCCACAGA+AGG - chr3_4:48021647-48021666 Msa0504090:intron 55.0%
TTTCCCGGTTCAAGGAGAGG+AGG - chr3_4:48021827-48021846 Msa0504090:CDS 55.0%
GGAAACTCGGACCAGTTCCA+AGG + chr3_4:48021859-48021878 None:intergenic 55.0%
!! CTGGTATTGATAGGGTCGGG+TGG + chr3_4:48021912-48021931 None:intergenic 55.0%
GGCTTGGATGGGATGAAGCA+TGG - chr3_4:48021962-48021981 Msa0504090:CDS 55.0%
TGGATGGGATGAAGCATGGG+AGG - chr3_4:48021966-48021985 Msa0504090:CDS 55.0%
ATTTCTCCAGTGCTTCGGGG+AGG + chr3_4:48022166-48022185 None:intergenic 55.0%
!! TCCCCGAAGCACTGGAGAAA+TGG - chr3_4:48022165-48022184 Msa0504090:CDS 55.0%
! CCATCCGAACAACTGGCTTC+TGG + chr3_4:48022425-48022444 None:intergenic 55.0%
CCAGAAGCCAGTTGTTCGGA+TGG - chr3_4:48022422-48022441 Msa0504090:intron 55.0%
GGTCTTCGAGAGGTGAGTAC+CGG - chr3_4:48022902-48022921 Msa0504090:intron 55.0%
GTAGCTGCCTCTTGTACTCG+TGG + chr3_4:48023143-48023162 None:intergenic 55.0%
GCACGCACTGTCATGATTGG+AGG - chr3_4:48023856-48023875 Msa0504090:intron 55.0%
CGGATGATGTACCTCGACTG+AGG - chr3_4:48024385-48024404 Msa0504090:intron 55.0%
CCTGAGCATCCACGTAGCTT+GGG + chr3_4:48025278-48025297 None:intergenic 55.0%
TCCTGAGCATCCACGTAGCT+TGG + chr3_4:48025279-48025298 None:intergenic 55.0%
GTGGGAAGTTCAGCAGTGAC+AGG - chr3_4:48025853-48025872 Msa0504090:intron 55.0%
!! AGTTGCTGAGGACTGGCTCG+AGG - chr3_4:48020879-48020898 Msa0504090:intron 60.0%
CTGCCTCCTCTCCTTGAACC+GGG + chr3_4:48021833-48021852 None:intergenic 60.0%
CCTGCCTCCTCTCCTTGAAC+CGG + chr3_4:48021834-48021853 None:intergenic 60.0%
CGGTTCAAGGAGAGGAGGCA+GGG - chr3_4:48021832-48021851 Msa0504090:CDS 60.0%
CTGGTCCGAGTTTCCGACGA+AGG - chr3_4:48021864-48021883 Msa0504090:CDS 60.0%
ACCGCAGGCATGGAAGCAAG+TGG - chr3_4:48024243-48024262 Msa0504090:CDS 60.0%
GCCACTTGCTTCCATGCCTG+CGG + chr3_4:48024247-48024266 None:intergenic 60.0%
CATCCGCTGTCGCACCAAAG+AGG + chr3_4:48024371-48024390 None:intergenic 60.0%
CCCAAGCTACGTGGATGCTC+AGG - chr3_4:48025275-48025294 Msa0504090:intron 60.0%
CCACCTTCTGTGGCATCCCC+AGG + chr3_4:48021653-48021672 None:intergenic 65.0%
CCTGGGGATGCCACAGAAGG+TGG - chr3_4:48021650-48021669 Msa0504090:intron 65.0%
CCGGTTCAAGGAGAGGAGGC+AGG - chr3_4:48021831-48021850 Msa0504090:CDS 65.0%
AGGAGAGGAGGCAGGGACCT+TGG - chr3_4:48021839-48021858 Msa0504090:CDS 65.0%
GGAGGCAGGGACCTTGGAAC+TGG - chr3_4:48021845-48021864 Msa0504090:CDS 65.0%
CACTGTCCTCCCCGAAGCAC+TGG - chr3_4:48022157-48022176 Msa0504090:CDS 65.0%
!! GTGGCGGAGGTGCTTATCCC+AGG - chr3_4:48024195-48024214 Msa0504090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 48018803 48026220 48018803 ID=Msa0504090;Name=Msa0504090
chr3_4 mRNA 48018803 48026220 48018803 ID=Msa0504090-mRNA-1;Parent=Msa0504090;Name=Msa0504090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=70|1|1|1|0.93|0.87|16|288|842
chr3_4 exon 48018803 48019217 48018803 ID=Msa0504090-mRNA-1:exon:10367;Parent=Msa0504090-mRNA-1
chr3_4 exon 48019704 48019894 48019704 ID=Msa0504090-mRNA-1:exon:10366;Parent=Msa0504090-mRNA-1
chr3_4 exon 48020595 48020858 48020595 ID=Msa0504090-mRNA-1:exon:10365;Parent=Msa0504090-mRNA-1
chr3_4 exon 48021042 48021200 48021042 ID=Msa0504090-mRNA-1:exon:10364;Parent=Msa0504090-mRNA-1
chr3_4 exon 48021820 48022023 48021820 ID=Msa0504090-mRNA-1:exon:10363;Parent=Msa0504090-mRNA-1
chr3_4 exon 48022110 48022328 48022110 ID=Msa0504090-mRNA-1:exon:10362;Parent=Msa0504090-mRNA-1
chr3_4 exon 48022550 48022678 48022550 ID=Msa0504090-mRNA-1:exon:10361;Parent=Msa0504090-mRNA-1
chr3_4 exon 48022770 48022887 48022770 ID=Msa0504090-mRNA-1:exon:10360;Parent=Msa0504090-mRNA-1
chr3_4 exon 48023025 48023203 48023025 ID=Msa0504090-mRNA-1:exon:10359;Parent=Msa0504090-mRNA-1
chr3_4 exon 48023299 48023391 48023299 ID=Msa0504090-mRNA-1:exon:10358;Parent=Msa0504090-mRNA-1
chr3_4 exon 48023635 48023824 48023635 ID=Msa0504090-mRNA-1:exon:10357;Parent=Msa0504090-mRNA-1
chr3_4 exon 48023944 48024029 48023944 ID=Msa0504090-mRNA-1:exon:10356;Parent=Msa0504090-mRNA-1
chr3_4 exon 48024123 48024299 48024123 ID=Msa0504090-mRNA-1:exon:10355;Parent=Msa0504090-mRNA-1
chr3_4 exon 48024502 48024681 48024502 ID=Msa0504090-mRNA-1:exon:10354;Parent=Msa0504090-mRNA-1
chr3_4 exon 48025491 48025725 48025491 ID=Msa0504090-mRNA-1:exon:10353;Parent=Msa0504090-mRNA-1
chr3_4 exon 48026173 48026220 48026173 ID=Msa0504090-mRNA-1:exon:10352;Parent=Msa0504090-mRNA-1
chr3_4 five_prime_UTR 48026173 48026220 48026173 ID=Msa0504090-mRNA-1:five_prime_utr;Parent=Msa0504090-mRNA-1
chr3_4 five_prime_UTR 48025704 48025725 48025704 ID=Msa0504090-mRNA-1:five_prime_utr;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48025491 48025703 48025491 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48024502 48024681 48024502 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48024123 48024299 48024123 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48023944 48024029 48023944 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48023635 48023824 48023635 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48023299 48023391 48023299 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48023025 48023203 48023025 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48022770 48022887 48022770 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48022550 48022678 48022550 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48022110 48022328 48022110 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48021820 48022023 48021820 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48021042 48021200 48021042 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48020595 48020858 48020595 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48019704 48019894 48019704 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 CDS 48019091 48019217 48019091 ID=Msa0504090-mRNA-1:cds;Parent=Msa0504090-mRNA-1
chr3_4 three_prime_UTR 48018803 48019090 48018803 ID=Msa0504090-mRNA-1:three_prime_utr;Parent=Msa0504090-mRNA-1
Gene Sequence

>Msa0504090

ATGGGTTCCATAGAAGAGACTAATGGTGATGGTGGTTCTTTAGTTTCTGCTAAAGTACCTGCTGTTGCAAATCCATTGGCTGAAAAACCTGATGAGATTGCTTCTAACATCAGTTACCATGCTCAATATAGTCCTCACTTTTCACCTTTCAAGTTTGAGCTTGAACAAGCTTATTATGCAACTGCTGAGAGTGTTCGTGATCGTCTCGTTCAGCAATGGAATGAAACATACTTACATTTTCACAAAGTTGATCCCAAGCAAACTTACTACTTATCAATGGAGTTCCTTCAAGGTCGAGCCTTGACCAATGCTATTGGAAATTTGAATATTCAAGATGCATATGCTGATGCTTTGCGCAAGTTCGGACTTAAACTTGAAGAAATAACCGAGCAGGAAAAGGATGCAGCACTAGGAAATGGTGGTCTTGGTCGGCTTGCTTCTTGCTTTCTGGATTCCATGGCAACACTTAATTTACCTGCTTGGGGGTATGGTTTGAGGTACCGGTACGGACTATTTAAACAGATAATCGCAAAAGAAGGTCAGGAGGAAGTTGCTGAGGACTGGCTCGAGAAGTTTAGCCCTTGGGAAATTGTGAGGCACGACGTTTTGTACCCTATCAGATTCTTTGGCCAGGTCGAGGTTAACCCTAATGGAAGCCGAAAATGGATTGGCGGAGAAGTTATGCAAGCACTAGCTTATGATGTGCCAATTCCTGGATACCAAACCAAGAACACCATCAGTCTTCGCCTCTGGGAAGCTAAAGCTTGTGCTGATGATTTTGATTTATTTTTATTCAATGATGGACAACTTGAATCTGCTTCAGTGCTTCACTCACGAGCTCAACAGATTTGTTCGGTTTTGTATCCTGGGGATGCCACAGAAGGTGGAAAACTTCTACGGCTGAAGCAGCAGTACTTTCTCTGCAGTGCATCACTCCAAGACATCATTTCCCGGTTCAAGGAGAGGAGGCAGGGACCTTGGAACTGGTCCGAGTTTCCGACGAAGGTTGCTGTACAATTGAATGATACCCACCCGACCCTATCAATACCAGAGTTGATGCGTTTACTTATGGATGAAGAAGGGCTTGGATGGGATGAAGCATGGGAGGTTACATCAAAGACAATTGCTTACACTAATCACACTGTCCTCCCCGAAGCACTGGAGAAATGGTCTCAGTCTGTAATGTGGAAATTGCTTCCTCGTCACATGGAAATCATAGAAGAAATTGACAAAAGATTCACTACAATGATAAGTAAAACCCGACTGGATCTTGAGAGTGAACTTTCCAACATGCGCATTTTGGACAATAATCCCCAGAAGCCAGTTGTTCGGATGGCAAATTTGTGTGTGGTTTCTGCTCATACTGTGAATGGAGTTGCCCAATTACACAGTGATATATTGAAGTCGGAATTATTTGCAAATTATGTTTCAATATGGCCAACAAAGTTCCAAAATAAAACTAATGGCATTACACCTCGAAGATGGATCAATTTTTGCAGTCCTGAGCTAAGCCAAATAATCACTAAGTGGTTAAAAACTGATAAGTGGGTAACCGATCTTGACTTACTGACAGGTCTTCGAGAGTTTGCTGACAATGAAGATCTGCAAGCAGAGTGGTCGTCTGCAAAGATGGCTAATAAGCAGCGCTTGGCACAGTACGTTCTGAAGGTGACAGGGGAGAGCATTGACCCTGATACTCTATTTGACATTCAAGTCAAGCGTATCCACGAGTACAAGAGGCAGCTACTAAACATTCTTTATGTGATCTATAGATATAAAAAGTTGAAGGAGATGAGCCCTGAAGAACGGAAAAGTACAACTGCACGCACTGTCATGATTGGAGGAAAGGCATTTGCGACTTACACAAATGCTAAACGGATAGTCAAGCTGGTCAATGATGTTGGTGCTATTGTAAACAGTGATCCTGTGGTCAATAGCTACTTGAAGGTTGTGTTTGTGCCAAATTACAATGTATCGGTGGCGGAGGTGCTTATCCCAGGAAGTGAGCTATCCCAACATATTAGTACCGCAGGCATGGAAGCAAGTGGCACAAGCAACATGAAATTTGCTTTGAATGGGTGCCTTATTATAGGTACTTTAGATGGAGCTAATGTGGAAATCAGGGAAGAGATCGGTGAGGAGAATTTTTTCCTCTTTGGTGCGACAGCGGATGATGTACCTCGACTGAGGAAGGAAAGAGAGGATGGACTGTTCAAACCGGATCCTCGATTTGAAGAGGCAAAGAAGTTTATTAGGAGTGGGGTGTTTGGAAGCTACGACTACAACCCATTGCTTGATTCATTGGAAGGAAATTCTGGTTATGGTCGTGGTGATTACTTTCTTGTTGGTTATGACTTCCCAAGCTACGTGGATGCTCAGGAAAAAGTAGACGAAGCATATTGTGACAAGAAAAGGTGGCTAAAAATGTCTATCTTAAGTACTGCTGGGAGTGGGAAGTTCAGCAGTGACAGGACAATTGCTCAGTATGCTAAGGAAATTTGGAATATAGAAGAATGCCGTGTACCATAA

Protein sequence

>Msa0504090

MGSIEETNGDGGSLVSAKVPAVANPLAEKPDEIASNISYHAQYSPHFSPFKFELEQAYYATAESVRDRLVQQWNETYLHFHKVDPKQTYYLSMEFLQGRALTNAIGNLNIQDAYADALRKFGLKLEEITEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQIIAKEGQEEVAEDWLEKFSPWEIVRHDVLYPIRFFGQVEVNPNGSRKWIGGEVMQALAYDVPIPGYQTKNTISLRLWEAKACADDFDLFLFNDGQLESASVLHSRAQQICSVLYPGDATEGGKLLRLKQQYFLCSASLQDIISRFKERRQGPWNWSEFPTKVAVQLNDTHPTLSIPELMRLLMDEEGLGWDEAWEVTSKTIAYTNHTVLPEALEKWSQSVMWKLLPRHMEIIEEIDKRFTTMISKTRLDLESELSNMRILDNNPQKPVVRMANLCVVSAHTVNGVAQLHSDILKSELFANYVSIWPTKFQNKTNGITPRRWINFCSPELSQIITKWLKTDKWVTDLDLLTGLREFADNEDLQAEWSSAKMANKQRLAQYVLKVTGESIDPDTLFDIQVKRIHEYKRQLLNILYVIYRYKKLKEMSPEERKSTTARTVMIGGKAFATYTNAKRIVKLVNDVGAIVNSDPVVNSYLKVVFVPNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNGCLIIGTLDGANVEIREEIGEENFFLFGATADDVPRLRKEREDGLFKPDPRFEEAKKFIRSGVFGSYDYNPLLDSLEGNSGYGRGDYFLVGYDFPSYVDAQEKVDEAYCDKKRWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEECRVP*