Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475730 | XP_024635234.1 | 95.349 | 301 | 8 | 1 | 1 | 295 | 303 | 603 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475730 | sp|Q56X46|MSL2_ARATH | 75.676 | 185 | 39 | 1 | 1 | 179 | 291 | 475 | 1.17e-97 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475730 | A0A396IZX7 | 95.349 | 301 | 8 | 1 | 1 | 295 | 303 | 603 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379820 | Msa0475730 | 0.879760 | 9.580167e-70 | -8.615850e-47 |
| Msa0379850 | Msa0475730 | 0.908642 | 1.368304e-81 | -8.615850e-47 |
| Msa0429170 | Msa0475730 | 0.897149 | 1.860001e-76 | -8.615850e-47 |
| Msa0475730 | Msa1038110 | 0.812210 | 4.754588e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475730 | MtrunA17_Chr3g0132961 | 95.349 | 301 | 8 | 1 | 1 | 295 | 303 | 603 | 0.0 | 586 |
| Msa0475730 | MtrunA17_Chr3g0132931 | 64.912 | 285 | 84 | 4 | 1 | 273 | 300 | 580 | 7.37e-115 | 347 |
| Msa0475730 | MtrunA17_Chr5g0412241 | 59.041 | 271 | 94 | 5 | 1 | 257 | 288 | 555 | 7.29e-102 | 313 |
| Msa0475730 | MtrunA17_Chr3g0132941 | 38.854 | 157 | 57 | 7 | 22 | 167 | 143 | 271 | 1.34e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475730 | AT5G10490.2 | 75.676 | 185 | 39 | 1 | 1 | 179 | 263 | 447 | 6.63e-99 | 304 |
| Msa0475730 | AT5G10490.1 | 75.676 | 185 | 39 | 1 | 1 | 179 | 291 | 475 | 1.19e-98 | 304 |
| Msa0475730 | AT5G10490.3 | 75.676 | 185 | 39 | 1 | 1 | 179 | 289 | 473 | 1.26e-98 | 304 |
| Msa0475730 | AT1G58200.2 | 52.721 | 294 | 113 | 6 | 1 | 274 | 293 | 580 | 1.40e-94 | 293 |
| Msa0475730 | AT1G58200.1 | 52.721 | 294 | 113 | 6 | 1 | 274 | 293 | 580 | 1.40e-94 | 293 |
Find 80 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATACAAATAATTTGATTTA+TGG | 0.107623 | 3_3:+79154435 | None:intergenic |
| CATTAGATGATAACAAAATT+TGG | 0.123396 | 3_3:+79154745 | None:intergenic |
| CACAATTTATGTGCATAATA+TGG | 0.134816 | 3_3:+79154467 | None:intergenic |
| TGCTCTCGAACGAGTGAAAA+TGG | 0.182392 | 3_3:+79155046 | None:intergenic |
| ATTAAAGGATATGAGGTTTC+TGG | 0.191393 | 3_3:-79157102 | Msa0475730:intron |
| GCAACCTTTGCATATATAAA+TGG | 0.224580 | 3_3:-79154541 | Msa0475730:three_prime_UTR |
| ATTAGATGATAACAAAATTT+GGG | 0.273692 | 3_3:+79154746 | None:intergenic |
| GGGTGATGTTTCTGATTTAG+AGG | 0.275710 | 3_3:+79154767 | None:intergenic |
| AGATTCAGAGGCTAAATTTC+GGG | 0.275982 | 3_3:+79154812 | None:intergenic |
| GTTGAAGGCTTAGCTTTATA+AGG | 0.287270 | 3_3:+79154990 | None:intergenic |
| AGCTGATATGCGCAAGGTTT+TGG | 0.287823 | 3_3:-79156670 | Msa0475730:CDS |
| CATAATATGGGTAATCAGTT+AGG | 0.296725 | 3_3:+79154480 | None:intergenic |
| ATTCGTGAAACCTTGATAAC+TGG | 0.330316 | 3_3:-79154930 | Msa0475730:CDS |
| TATCAAGGTTTCACGAATCT+TGG | 0.330485 | 3_3:+79154935 | None:intergenic |
| CGGATTAAAACAAAGATTAA+AGG | 0.332484 | 3_3:-79157117 | Msa0475730:CDS |
| ATAGTAGTTGATTGAGTTGA+AGG | 0.349386 | 3_3:+79154975 | None:intergenic |
| GATTTAGAGGCCTTCTGAAC+TGG | 0.357096 | 3_3:+79154780 | None:intergenic |
| ACTAGAGTTAGAACTCAAAT+TGG | 0.367139 | 3_3:-79154507 | Msa0475730:three_prime_UTR |
| CTTATGTCAAGCTGGGTCTA+TGG | 0.377770 | 3_3:-79154588 | Msa0475730:three_prime_UTR |
| AAGATTCAGAGGCTAAATTT+CGG | 0.378425 | 3_3:+79154811 | None:intergenic |
| ATGTTGACTTTAACTTATCC+TGG | 0.383411 | 3_3:+79154847 | None:intergenic |
| AACAAAGATTAAAGGATATG+AGG | 0.385214 | 3_3:-79157109 | Msa0475730:CDS |
| TCCAGAAAATCAAGCTGTTA+TGG | 0.387172 | 3_3:-79156586 | Msa0475730:intron |
| GTGAAAATGGGGTCGTCAAA+TGG | 0.395728 | 3_3:+79155059 | None:intergenic |
| ACAATTTATGTGCATAATAT+GGG | 0.395988 | 3_3:+79154468 | None:intergenic |
| TTCACACTCAACTTGTGATT+AGG | 0.403461 | 3_3:+79156890 | None:intergenic |
| ATCTTTGAAACCAGTTATCA+AGG | 0.419330 | 3_3:+79154920 | None:intergenic |
| GTTTAATGCGTGTAATAAAC+AGG | 0.422934 | 3_3:+79154396 | None:intergenic |
| GCTCTCGAACGAGTGAAAAT+GGG | 0.423150 | 3_3:+79155047 | None:intergenic |
| ATCCGCTCATTCACAACAAA+TGG | 0.433039 | 3_3:+79157135 | None:intergenic |
| ATAACTGGTTTCAAAGATGA+AGG | 0.457024 | 3_3:-79154915 | Msa0475730:CDS |
| TTATAAGGTGAATTTGTGAA+TGG | 0.457800 | 3_3:+79155005 | None:intergenic |
| TATAAGGTGAATTTGTGAAT+GGG | 0.464354 | 3_3:+79155006 | None:intergenic |
| TTCACTCGTTCGAGAGCAAA+GGG | 0.468144 | 3_3:-79155041 | Msa0475730:CDS |
| CTTATCCTGGGACTTTACAC+TGG | 0.468864 | 3_3:+79154860 | None:intergenic |
| TGAAGAGTATCTCCGTGTTA+AGG | 0.473513 | 3_3:-79155825 | Msa0475730:intron |
| CTTGCGCATATCAGCTATGA+TGG | 0.477938 | 3_3:+79156677 | None:intergenic |
| TGGTCACCAACAGTAGTTAG+AGG | 0.488933 | 3_3:-79156938 | Msa0475730:CDS |
| AAAACAGGAGGCCATTCTCT+TGG | 0.492432 | 3_3:-79155177 | Msa0475730:intron |
| GGTCTATGGAATGGTTCGGT+TGG | 0.498185 | 3_3:-79154574 | Msa0475730:three_prime_UTR |
| CTTAGAGTCATCAGTCATCA+TGG | 0.504609 | 3_3:-79155149 | Msa0475730:CDS |
| CCCTAGCTGATTAGCCATTG+AGG | 0.504678 | 3_3:-79154630 | Msa0475730:three_prime_UTR |
| CCCTCAATGGCTAATCAGCT+AGG | 0.508055 | 3_3:+79154629 | None:intergenic |
| CCTAGCTGATTAGCCATTGA+GGG | 0.510490 | 3_3:-79154629 | Msa0475730:three_prime_UTR |
| CTGAATTGTGCGGATGGGTG+TGG | 0.513236 | 3_3:+79155115 | None:intergenic |
| GCTGGGTCTATGGAATGGTT+CGG | 0.514432 | 3_3:-79154578 | Msa0475730:three_prime_UTR |
| ATAATATGGGTAATCAGTTA+GGG | 0.524874 | 3_3:+79154481 | None:intergenic |
| TTATCAAGCTTATGTCAAGC+TGG | 0.526521 | 3_3:-79154596 | Msa0475730:three_prime_UTR |
| TGTTGACTTTAACTTATCCT+GGG | 0.529999 | 3_3:+79154848 | None:intergenic |
| CTGGGACTTTACACTGGATG+AGG | 0.533658 | 3_3:+79154866 | None:intergenic |
| TTTCACTCGTTCGAGAGCAA+AGG | 0.537364 | 3_3:-79155042 | Msa0475730:CDS |
| CATATTATGCACATAAATTG+TGG | 0.537790 | 3_3:-79154466 | Msa0475730:three_prime_UTR |
| CTCATCCAGTGTAAAGTCCC+AGG | 0.537833 | 3_3:-79154865 | Msa0475730:CDS |
| TAATACTAGACTGCCCTCAA+TGG | 0.540488 | 3_3:+79154616 | None:intergenic |
| TCAACCATTTATATATGCAA+AGG | 0.550765 | 3_3:+79154537 | None:intergenic |
| ATCTTAGTAAGAAAACTCAT+TGG | 0.552673 | 3_3:-79156856 | Msa0475730:CDS |
| TTCTGATAATCCAGTTCAGA+AGG | 0.553518 | 3_3:-79154790 | Msa0475730:CDS |
| CATCTTCTGAATTGTGCGGA+TGG | 0.559810 | 3_3:+79155109 | None:intergenic |
| GTCAAGCTGGGTCTATGGAA+TGG | 0.560919 | 3_3:-79154583 | Msa0475730:three_prime_UTR |
| GGCCATTTGTTGTGAATGAG+CGG | 0.561264 | 3_3:-79157137 | Msa0475730:CDS |
| TCAGCACCTCTAACTACTGT+TGG | 0.561707 | 3_3:+79156932 | None:intergenic |
| GGATGAGGGCGTCCATGTTG+CGG | 0.563662 | 3_3:+79154881 | None:intergenic |
| TCTAAGAAGATCCAAGAGAA+TGG | 0.567023 | 3_3:+79155166 | None:intergenic |
| TATCAAGCTTATGTCAAGCT+GGG | 0.575502 | 3_3:-79154595 | Msa0475730:three_prime_UTR |
| ATCTTCTGAATTGTGCGGAT+GGG | 0.581018 | 3_3:+79155110 | None:intergenic |
| CTCTCGAACGAGTGAAAATG+GGG | 0.581916 | 3_3:+79155048 | None:intergenic |
| TCACCTTGCTATCAGTCACT+TGG | 0.584498 | 3_3:-79156822 | Msa0475730:CDS |
| AATTTGTGAATGGGAAAGAG+TGG | 0.592121 | 3_3:+79155015 | None:intergenic |
| CATCCAAGTGACTGATAGCA+AGG | 0.593216 | 3_3:+79156819 | None:intergenic |
| CCTCAATGGCTAATCAGCTA+GGG | 0.595650 | 3_3:+79154630 | None:intergenic |
| TCATCAGTCATCATGGAGCT+CGG | 0.597209 | 3_3:-79155142 | Msa0475730:CDS |
| TTCTGTAGCATGTAGGATGG+TGG | 0.601690 | 3_3:-79156958 | Msa0475730:intron |
| GTGTGATGATTCATGCAACT+CGG | 0.610555 | 3_3:-79157158 | None:intergenic |
| TTAGATGATAACAAAATTTG+GGG | 0.623288 | 3_3:+79154747 | None:intergenic |
| TGGATTATCAGAAGATTCAG+AGG | 0.623721 | 3_3:+79154800 | None:intergenic |
| CATCATAGCTGATATGCGCA+AGG | 0.643564 | 3_3:-79156676 | Msa0475730:CDS |
| TGGGACTTTACACTGGATGA+GGG | 0.659785 | 3_3:+79154867 | None:intergenic |
| AATCTAGTCTCACCTTAACA+CGG | 0.682332 | 3_3:+79155813 | None:intergenic |
| TGTACATCTTCTGAATTGTG+CGG | 0.699375 | 3_3:+79155105 | None:intergenic |
| AGTTGAGTGTGAATGTTGTG+AGG | 0.723498 | 3_3:-79156880 | Msa0475730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATATCACTTAAAA+TGG | + | chr3_3:79154552-79154571 | None:intergenic | 10.0% |
| !!! | TTTTTTGTAAACATAAAAAT+TGG | + | chr3_3:79155918-79155937 | None:intergenic | 10.0% |
| !!! | TATACAAATAATTTGATTTA+TGG | + | chr3_3:79157124-79157143 | None:intergenic | 10.0% |
| !! | ATGGTATTTAAAAAATTTAC+TGG | - | chr3_3:79154792-79154811 | Msa0475730:CDS | 15.0% |
| !! | TGGTATTTAAAAAATTTACT+GGG | - | chr3_3:79154793-79154812 | Msa0475730:CDS | 15.0% |
| !!! | CATTTATTTCATTAACATTT+TGG | - | chr3_3:79155546-79155565 | Msa0475730:intron | 15.0% |
| !! | AAAAAGTAAAAAGTAAATCT+TGG | + | chr3_3:79155972-79155991 | None:intergenic | 15.0% |
| !! | AATTGTTTCATCATAAAATA+TGG | - | chr3_3:79156266-79156285 | Msa0475730:intron | 15.0% |
| !! | ATTAGATGATAACAAAATTT+GGG | + | chr3_3:79156813-79156832 | None:intergenic | 15.0% |
| !! | AATTATCTAACTAACTGAAA+AGG | - | chr3_3:79154492-79154511 | Msa0475730:three_prime_UTR | 20.0% |
| !!! | GTGATATAAAAATAGTTTTC+TGG | - | chr3_3:79154558-79154577 | Msa0475730:three_prime_UTR | 20.0% |
| !!! | AATTTTTTTTGTTCTACTAG+AGG | + | chr3_3:79154920-79154939 | None:intergenic | 20.0% |
| !! | ATAAACCAATTAACAGAAAA+AGG | + | chr3_3:79155002-79155021 | None:intergenic | 20.0% |
| !! | TTGTCAAATTATACTATGAT+AGG | - | chr3_3:79155439-79155458 | Msa0475730:intron | 20.0% |
| !! | TAAAAATTGGTGAAAAATTG+AGG | + | chr3_3:79155905-79155924 | None:intergenic | 20.0% |
| !! | CACATAATAGCTTATTATAT+AGG | - | chr3_3:79156055-79156074 | Msa0475730:intron | 20.0% |
| !! | AACAAATGCATAACAAATTT+AGG | + | chr3_3:79156164-79156183 | None:intergenic | 20.0% |
| !!! | TATATTCAAGTCATTTTGTT+CGG | - | chr3_3:79156305-79156324 | Msa0475730:intron | 20.0% |
| !! | TTAGATGATAACAAAATTTG+GGG | + | chr3_3:79156812-79156831 | None:intergenic | 20.0% |
| !! | CATTAGATGATAACAAAATT+TGG | + | chr3_3:79156814-79156833 | None:intergenic | 20.0% |
| !! | ACAATTTATGTGCATAATAT+GGG | + | chr3_3:79157091-79157110 | None:intergenic | 20.0% |
| ! | CGGATTAAAACAAAGATTAA+AGG | - | chr3_3:79154439-79154458 | Msa0475730:three_prime_UTR | 25.0% |
| ! | AACAAAGATTAAAGGATATG+AGG | - | chr3_3:79154447-79154466 | Msa0475730:three_prime_UTR | 25.0% |
| ! | ATCTTAGTAAGAAAACTCAT+TGG | - | chr3_3:79154700-79154719 | Msa0475730:exon | 25.0% |
| ! | AACAAAAAAAATTGCACAGA+AGG | - | chr3_3:79154927-79154946 | Msa0475730:CDS | 25.0% |
| ! | ACAAAAAAAATTGCACAGAA+GGG | - | chr3_3:79154928-79154947 | Msa0475730:CDS | 25.0% |
| !! | TGATACCTTTTTCTGTTAAT+TGG | - | chr3_3:79154994-79155013 | Msa0475730:CDS | 25.0% |
| ! | CCTAGTAAAAAATTCTACAA+AGG | + | chr3_3:79155225-79155244 | None:intergenic | 25.0% |
| !!! | CCTTTGTAGAATTTTTTACT+AGG | - | chr3_3:79155222-79155241 | Msa0475730:intron | 25.0% |
| !! | GTATAATTTGACAACCATTT+TGG | + | chr3_3:79155433-79155452 | None:intergenic | 25.0% |
| ! | CCAATGATTGATAAATTACT+AGG | + | chr3_3:79155488-79155507 | None:intergenic | 25.0% |
| ! | CCTAGTAATTTATCAATCAT+TGG | - | chr3_3:79155485-79155504 | Msa0475730:intron | 25.0% |
| ! | TAATATCTGCAACAGAAAAA+GGG | + | chr3_3:79155682-79155701 | None:intergenic | 25.0% |
| ! | TTTCTTCTTCAAATTACTCT+CGG | - | chr3_3:79155992-79156011 | Msa0475730:intron | 25.0% |
| ! | CTTATTATATAGGCTGATAT+CGG | - | chr3_3:79156065-79156084 | Msa0475730:intron | 25.0% |
| ! | GAAACAATAGTAATGTAATG+AGG | + | chr3_3:79156125-79156144 | None:intergenic | 25.0% |
| ! | TAATTTCCATGTGATAAAAC+AGG | - | chr3_3:79156364-79156383 | Msa0475730:intron | 25.0% |
| ! | TATAAGGTGAATTTGTGAAT+GGG | + | chr3_3:79156553-79156572 | None:intergenic | 25.0% |
| ! | TTATAAGGTGAATTTGTGAA+TGG | + | chr3_3:79156554-79156573 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATCTTGCTTTGA+TGG | + | chr3_3:79156845-79156864 | None:intergenic | 25.0% |
| ! | TCAACCATTTATATATGCAA+AGG | + | chr3_3:79157022-79157041 | None:intergenic | 25.0% |
| ! | ATAATATGGGTAATCAGTTA+GGG | + | chr3_3:79157078-79157097 | None:intergenic | 25.0% |
| ! | CACAATTTATGTGCATAATA+TGG | + | chr3_3:79157092-79157111 | None:intergenic | 25.0% |
| ! | CATATTATGCACATAAATTG+TGG | - | chr3_3:79157090-79157109 | Msa0475730:intron | 25.0% |
| ATTAAAGGATATGAGGTTTC+TGG | - | chr3_3:79154454-79154473 | Msa0475730:three_prime_UTR | 30.0% | |
| ! | TCATATTTTCTGTAGCATGT+AGG | - | chr3_3:79154591-79154610 | Msa0475730:three_prime_UTR | 30.0% |
| ! | AATTTACTGGGATTTTCTGA+TGG | - | chr3_3:79154805-79154824 | Msa0475730:CDS | 30.0% |
| ! | TTGTTCTACTAGAGGATTTT+TGG | + | chr3_3:79154912-79154931 | None:intergenic | 30.0% |
| AAGGGAAGAAAATAAGATAC+TGG | + | chr3_3:79155050-79155069 | None:intergenic | 30.0% | |
| TTAGAAACCTGATTCAACTA+CGG | + | chr3_3:79155289-79155308 | None:intergenic | 30.0% | |
| ATAACTCTGACTAAAGTCAA+AGG | - | chr3_3:79155308-79155327 | Msa0475730:intron | 30.0% | |
| ! | AAAAGCTTTTGTAAGCATTC+TGG | + | chr3_3:79155385-79155404 | None:intergenic | 30.0% |
| TCATCTGTTTCATTCCAAAA+TGG | - | chr3_3:79155416-79155435 | Msa0475730:intron | 30.0% | |
| ATCAATCATTGGAATCTGAT+TGG | - | chr3_3:79155496-79155515 | Msa0475730:intron | 30.0% | |
| AGTAGAGCAGAAAGATAATA+GGG | + | chr3_3:79155595-79155614 | None:intergenic | 30.0% | |
| AAGTAGAGCAGAAAGATAAT+AGG | + | chr3_3:79155596-79155615 | None:intergenic | 30.0% | |
| CTAATATCTGCAACAGAAAA+AGG | + | chr3_3:79155683-79155702 | None:intergenic | 30.0% | |
| TTTAGGCTACACAATATTTC+TGG | + | chr3_3:79156147-79156166 | None:intergenic | 30.0% | |
| ! | TTTTGTTCGGTTAACTGTTA+AGG | - | chr3_3:79156318-79156337 | Msa0475730:intron | 30.0% |
| TTTGTTCGGTTAACTGTTAA+GGG | - | chr3_3:79156319-79156338 | Msa0475730:intron | 30.0% | |
| !! | ATAGTAGTTGATTGAGTTGA+AGG | + | chr3_3:79156584-79156603 | None:intergenic | 30.0% |
| !! | ATCTTTGAAACCAGTTATCA+AGG | + | chr3_3:79156639-79156658 | None:intergenic | 30.0% |
| ! | ATAACTGGTTTCAAAGATGA+AGG | - | chr3_3:79156641-79156660 | Msa0475730:CDS | 30.0% |
| !! | TGTTGACTTTAACTTATCCT+GGG | + | chr3_3:79156711-79156730 | None:intergenic | 30.0% |
| !! | ATGTTGACTTTAACTTATCC+TGG | + | chr3_3:79156712-79156731 | None:intergenic | 30.0% |
| AAGATTCAGAGGCTAAATTT+CGG | + | chr3_3:79156748-79156767 | None:intergenic | 30.0% | |
| GCAACCTTTGCATATATAAA+TGG | - | chr3_3:79157015-79157034 | Msa0475730:intron | 30.0% | |
| ACTAGAGTTAGAACTCAAAT+TGG | - | chr3_3:79157049-79157068 | Msa0475730:intron | 30.0% | |
| CATAATATGGGTAATCAGTT+AGG | + | chr3_3:79157079-79157098 | None:intergenic | 30.0% | |
| ! | ATTTTCTGTAGCATGTAGGA+TGG | - | chr3_3:79154595-79154614 | Msa0475730:three_prime_UTR | 35.0% |
| TTCACACTCAACTTGTGATT+AGG | + | chr3_3:79154669-79154688 | None:intergenic | 35.0% | |
| TCCAGAAAATCAAGCTGTTA+TGG | - | chr3_3:79154970-79154989 | Msa0475730:CDS | 35.0% | |
| ! | ACCATAACAGCTTGATTTTC+TGG | + | chr3_3:79154974-79154993 | None:intergenic | 35.0% |
| GAACCAAGACTGAAGATAAA+GGG | + | chr3_3:79155068-79155087 | None:intergenic | 35.0% | |
| AGAACCAAGACTGAAGATAA+AGG | + | chr3_3:79155069-79155088 | None:intergenic | 35.0% | |
| !! | GGTTCTGAAAGGAAGTTATA+AGG | - | chr3_3:79155083-79155102 | Msa0475730:CDS | 35.0% |
| CTAGAAATGTAAACAAGCAG+AGG | + | chr3_3:79155196-79155215 | None:intergenic | 35.0% | |
| AGCAAAACCATAGGGTTAAA+TGG | + | chr3_3:79155248-79155267 | None:intergenic | 35.0% | |
| TGAATAGCAGCAAAACCATA+GGG | + | chr3_3:79155256-79155275 | None:intergenic | 35.0% | |
| AGGCAATACATAAATGACAC+AGG | + | chr3_3:79155468-79155487 | None:intergenic | 35.0% | |
| AATCTAGTCTCACCTTAACA+CGG | + | chr3_3:79155746-79155765 | None:intergenic | 35.0% | |
| AGCAACTCAATTGTATTAGC+TGG | - | chr3_3:79155877-79155896 | Msa0475730:intron | 35.0% | |
| !!! | GCTTGTTGCTTTTGTACATT+TGG | - | chr3_3:79156099-79156118 | Msa0475730:intron | 35.0% |
| TTTCCATGTGATAAAACAGG+AGG | - | chr3_3:79156367-79156386 | Msa0475730:intron | 35.0% | |
| TCTAAGAAGATCCAAGAGAA+TGG | + | chr3_3:79156393-79156412 | None:intergenic | 35.0% | |
| TGTACATCTTCTGAATTGTG+CGG | + | chr3_3:79156454-79156473 | None:intergenic | 35.0% | |
| AATTTGTGAATGGGAAAGAG+TGG | + | chr3_3:79156544-79156563 | None:intergenic | 35.0% | |
| !! | GTTGAAGGCTTAGCTTTATA+AGG | + | chr3_3:79156569-79156588 | None:intergenic | 35.0% |
| TATCAAGGTTTCACGAATCT+TGG | + | chr3_3:79156624-79156643 | None:intergenic | 35.0% | |
| ! | ATTCGTGAAACCTTGATAAC+TGG | - | chr3_3:79156626-79156645 | Msa0475730:CDS | 35.0% |
| AGATTCAGAGGCTAAATTTC+GGG | + | chr3_3:79156747-79156766 | None:intergenic | 35.0% | |
| TGGATTATCAGAAGATTCAG+AGG | + | chr3_3:79156759-79156778 | None:intergenic | 35.0% | |
| TTCTGATAATCCAGTTCAGA+AGG | - | chr3_3:79156766-79156785 | Msa0475730:intron | 35.0% | |
| TTATCAAGCTTATGTCAAGC+TGG | - | chr3_3:79156960-79156979 | Msa0475730:intron | 35.0% | |
| TATCAAGCTTATGTCAAGCT+GGG | - | chr3_3:79156961-79156980 | Msa0475730:intron | 35.0% | |
| ATCCGCTCATTCACAACAAA+TGG | + | chr3_3:79154424-79154443 | None:intergenic | 40.0% | |
| !! | ATGAGGTTTCTGGTAAGTTG+AGG | - | chr3_3:79154464-79154483 | Msa0475730:three_prime_UTR | 40.0% |
| AAAATGGAAACCACTCACGT+TGG | + | chr3_3:79154536-79154555 | None:intergenic | 40.0% | |
| AGTTGAGTGTGAATGTTGTG+AGG | - | chr3_3:79154676-79154695 | Msa0475730:three_prime_UTR | 40.0% | |
| AAGATTGATGTGAGTGCTCT+TGG | - | chr3_3:79154765-79154784 | Msa0475730:CDS | 40.0% | |
| TGTGAGTGCTCTTGGTTTAA+TGG | - | chr3_3:79154773-79154792 | Msa0475730:CDS | 40.0% | |
| GCTATCGCATCTTAAAACTG+AGG | - | chr3_3:79154827-79154846 | Msa0475730:CDS | 40.0% | |
| ! | ATTGCACAGAAGGGTTTTTC+TGG | - | chr3_3:79154937-79154956 | Msa0475730:CDS | 40.0% |
| CTTCCCTTTATCTTCAGTCT+TGG | - | chr3_3:79155062-79155081 | Msa0475730:CDS | 40.0% | |
| !! | TCTTCAGTCTTGGTTCTGAA+AGG | - | chr3_3:79155072-79155091 | Msa0475730:CDS | 40.0% |
| ATGCTATGAGATGCATCTCA+AGG | + | chr3_3:79155113-79155132 | None:intergenic | 40.0% | |
| ! | CAAAGTACCATTAGGCTTGT+AGG | - | chr3_3:79155141-79155160 | Msa0475730:CDS | 40.0% |
| TACTAGGCCATTTAACCCTA+TGG | - | chr3_3:79155238-79155257 | Msa0475730:intron | 40.0% | |
| GTGAATAGCAGCAAAACCAT+AGG | + | chr3_3:79155257-79155276 | None:intergenic | 40.0% | |
| !! | TGAAGAGTATCTCCGTGTTA+AGG | - | chr3_3:79155731-79155750 | Msa0475730:intron | 40.0% |
| CTAGATTGACGATAGCAACT+TGG | - | chr3_3:79155759-79155778 | Msa0475730:intron | 40.0% | |
| ATGTACAAAAGCAACAAGCC+TGG | + | chr3_3:79156098-79156117 | None:intergenic | 40.0% | |
| CTTAGAGTCATCAGTCATCA+TGG | - | chr3_3:79156407-79156426 | Msa0475730:intron | 40.0% | |
| ATCTTCTGAATTGTGCGGAT+GGG | + | chr3_3:79156449-79156468 | None:intergenic | 40.0% | |
| GTGAAAAAATTGCCGCAACA+TGG | - | chr3_3:79156663-79156682 | Msa0475730:CDS | 40.0% | |
| ! | GGGTGATGTTTCTGATTTAG+AGG | + | chr3_3:79156792-79156811 | None:intergenic | 40.0% |
| !!! | ACACAGCTGTCTTTTTTAGC+TGG | - | chr3_3:79156868-79156887 | Msa0475730:CDS | 40.0% |
| !!! | CACAGCTGTCTTTTTTAGCT+GGG | - | chr3_3:79156869-79156888 | Msa0475730:CDS | 40.0% |
| TAATACTAGACTGCCCTCAA+TGG | + | chr3_3:79156943-79156962 | None:intergenic | 40.0% | |
| !! | GGCCATTTGTTGTGAATGAG+CGG | - | chr3_3:79154419-79154438 | Msa0475730:three_prime_UTR | 45.0% |
| TTCTGTAGCATGTAGGATGG+TGG | - | chr3_3:79154598-79154617 | Msa0475730:three_prime_UTR | 45.0% | |
| TGGTCACCAACAGTAGTTAG+AGG | - | chr3_3:79154618-79154637 | Msa0475730:three_prime_UTR | 45.0% | |
| TCAGCACCTCTAACTACTGT+TGG | + | chr3_3:79154627-79154646 | None:intergenic | 45.0% | |
| ! | TCACCTTGCTATCAGTCACT+TGG | - | chr3_3:79154734-79154753 | Msa0475730:CDS | 45.0% |
| CATCCAAGTGACTGATAGCA+AGG | + | chr3_3:79154740-79154759 | None:intergenic | 45.0% | |
| CTTGCGCATATCAGCTATGA+TGG | + | chr3_3:79154882-79154901 | None:intergenic | 45.0% | |
| CATCATAGCTGATATGCGCA+AGG | - | chr3_3:79154880-79154899 | Msa0475730:CDS | 45.0% | |
| ! | AGCTGATATGCGCAAGGTTT+TGG | - | chr3_3:79154886-79154905 | Msa0475730:CDS | 45.0% |
| ATGCATCTCATAGCATAGCC+AGG | - | chr3_3:79155117-79155136 | Msa0475730:CDS | 45.0% | |
| TGCATCTCATAGCATAGCCA+GGG | - | chr3_3:79155118-79155137 | Msa0475730:CDS | 45.0% | |
| ATTGCCACCGTAGTTGAATC+AGG | - | chr3_3:79155279-79155298 | Msa0475730:intron | 45.0% | |
| GAAACCTGATTCAACTACGG+TGG | + | chr3_3:79155286-79155305 | None:intergenic | 45.0% | |
| ! | TGATTGGCTATCTTCACCCA+TGG | - | chr3_3:79155512-79155531 | Msa0475730:intron | 45.0% |
| AAATGCTTCATTGCCGCCAT+GGG | + | chr3_3:79155531-79155550 | None:intergenic | 45.0% | |
| TAAATGCTTCATTGCCGCCA+TGG | + | chr3_3:79155532-79155551 | None:intergenic | 45.0% | |
| ! | TGGCCTCCTGTTTTATCACA+TGG | + | chr3_3:79156373-79156392 | None:intergenic | 45.0% |
| AAAACAGGAGGCCATTCTCT+TGG | - | chr3_3:79156379-79156398 | Msa0475730:intron | 45.0% | |
| TCATCAGTCATCATGGAGCT+CGG | - | chr3_3:79156414-79156433 | Msa0475730:intron | 45.0% | |
| CATCTTCTGAATTGTGCGGA+TGG | + | chr3_3:79156450-79156469 | None:intergenic | 45.0% | |
| GTGAAAATGGGGTCGTCAAA+TGG | + | chr3_3:79156500-79156519 | None:intergenic | 45.0% | |
| CTCTCGAACGAGTGAAAATG+GGG | + | chr3_3:79156511-79156530 | None:intergenic | 45.0% | |
| GCTCTCGAACGAGTGAAAAT+GGG | + | chr3_3:79156512-79156531 | None:intergenic | 45.0% | |
| TGCTCTCGAACGAGTGAAAA+TGG | + | chr3_3:79156513-79156532 | None:intergenic | 45.0% | |
| TTTCACTCGTTCGAGAGCAA+AGG | - | chr3_3:79156514-79156533 | Msa0475730:intron | 45.0% | |
| TTCACTCGTTCGAGAGCAAA+GGG | - | chr3_3:79156515-79156534 | Msa0475730:intron | 45.0% | |
| TGGGACTTTACACTGGATGA+GGG | + | chr3_3:79156692-79156711 | None:intergenic | 45.0% | |
| CTTATCCTGGGACTTTACAC+TGG | + | chr3_3:79156699-79156718 | None:intergenic | 45.0% | |
| GATTTAGAGGCCTTCTGAAC+TGG | + | chr3_3:79156779-79156798 | None:intergenic | 45.0% | |
| CCTCAATGGCTAATCAGCTA+GGG | + | chr3_3:79156929-79156948 | None:intergenic | 45.0% | |
| ! | CCTAGCTGATTAGCCATTGA+GGG | - | chr3_3:79156927-79156946 | Msa0475730:CDS | 45.0% |
| CTTATGTCAAGCTGGGTCTA+TGG | - | chr3_3:79156968-79156987 | Msa0475730:intron | 45.0% | |
| ! | GCACAGAAGGGTTTTTCTGG+AGG | - | chr3_3:79154940-79154959 | Msa0475730:CDS | 50.0% |
| ! | AGCCAGGGCAAAGTACCATT+AGG | - | chr3_3:79155133-79155152 | Msa0475730:CDS | 50.0% |
| AGCCTAATGGTACTTTGCCC+TGG | + | chr3_3:79155138-79155157 | None:intergenic | 50.0% | |
| GCTACAGCCTACAAGCCTAA+TGG | + | chr3_3:79155151-79155170 | None:intergenic | 50.0% | |
| AGGCTTGTAGGCTGTAGCTA+TGG | - | chr3_3:79155153-79155172 | Msa0475730:CDS | 50.0% | |
| TTGGCTATCTTCACCCATGG+CGG | - | chr3_3:79155515-79155534 | Msa0475730:intron | 50.0% | |
| GCTGATATCGGAGATTGTCC+AGG | - | chr3_3:79156077-79156096 | Msa0475730:intron | 50.0% | |
| CTGGGACTTTACACTGGATG+AGG | + | chr3_3:79156693-79156712 | None:intergenic | 50.0% | |
| CTCATCCAGTGTAAAGTCCC+AGG | - | chr3_3:79156691-79156710 | Msa0475730:intron | 50.0% | |
| ! | CCCTAGCTGATTAGCCATTG+AGG | - | chr3_3:79156926-79156945 | Msa0475730:CDS | 50.0% |
| CCCTCAATGGCTAATCAGCT+AGG | + | chr3_3:79156930-79156949 | None:intergenic | 50.0% | |
| GTCAAGCTGGGTCTATGGAA+TGG | - | chr3_3:79156973-79156992 | Msa0475730:intron | 50.0% | |
| GCTGGGTCTATGGAATGGTT+CGG | - | chr3_3:79156978-79156997 | Msa0475730:intron | 50.0% | |
| !! | GGTCTATGGAATGGTTCGGT+TGG | - | chr3_3:79156982-79157001 | Msa0475730:intron | 50.0% |
| GCGAACTGATCCAACGTGAG+TGG | - | chr3_3:79154523-79154542 | Msa0475730:three_prime_UTR | 55.0% | |
| CTGAATTGTGCGGATGGGTG+TGG | + | chr3_3:79156444-79156463 | None:intergenic | 55.0% | |
| !! | GGATGAGGGCGTCCATGTTG+CGG | + | chr3_3:79156678-79156697 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79154403 | 79157175 | 79154403 | ID=Msa0475730;Name=Msa0475730 |
| chr3_3 | mRNA | 79154403 | 79157175 | 79154403 | ID=Msa0475730-mRNA-1;Parent=Msa0475730;Name=Msa0475730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.4|1|0.75|0.8|5|307|295 |
| chr3_3 | exon | 79154403 | 79155192 | 79154403 | ID=Msa0475730-mRNA-1:exon:21460;Parent=Msa0475730-mRNA-1 |
| chr3_3 | exon | 79155826 | 79155882 | 79155826 | ID=Msa0475730-mRNA-1:exon:21459;Parent=Msa0475730-mRNA-1 |
| chr3_3 | exon | 79156587 | 79156700 | 79156587 | ID=Msa0475730-mRNA-1:exon:21458;Parent=Msa0475730-mRNA-1 |
| chr3_3 | exon | 79156805 | 79156965 | 79156805 | ID=Msa0475730-mRNA-1:exon:21457;Parent=Msa0475730-mRNA-1 |
| chr3_3 | exon | 79157103 | 79157175 | 79157103 | ID=Msa0475730-mRNA-1:exon:21456;Parent=Msa0475730-mRNA-1 |
| chr3_3 | CDS | 79157103 | 79157175 | 79157103 | ID=Msa0475730-mRNA-1:cds;Parent=Msa0475730-mRNA-1 |
| chr3_3 | CDS | 79156805 | 79156965 | 79156805 | ID=Msa0475730-mRNA-1:cds;Parent=Msa0475730-mRNA-1 |
| chr3_3 | CDS | 79156587 | 79156700 | 79156587 | ID=Msa0475730-mRNA-1:cds;Parent=Msa0475730-mRNA-1 |
| chr3_3 | CDS | 79155826 | 79155882 | 79155826 | ID=Msa0475730-mRNA-1:cds;Parent=Msa0475730-mRNA-1 |
| chr3_3 | CDS | 79154710 | 79155192 | 79154710 | ID=Msa0475730-mRNA-1:cds;Parent=Msa0475730-mRNA-1 |
| chr3_3 | three_prime_UTR | 79154403 | 79154709 | 79154403 | ID=Msa0475730-mRNA-1:three_prime_utr;Parent=Msa0475730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
