Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062220 | XP_013468628.2 | 83.548 | 310 | 18 | 2 | 4 | 280 | 10 | 319 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062220 | sp|Q9FFJ8|LIMYB_ARATH | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.89e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062220 | A0A072VX43 | 82.581 | 310 | 21 | 2 | 4 | 280 | 10 | 319 | 0.0 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719090 | Msa1062220 | 0.800041 | 1.735577e-48 | -8.615850e-47 |
| Msa0427350 | Msa1062220 | 0.912081 | 2.927918e-83 | -8.615850e-47 |
| Msa0475870 | Msa1062220 | 0.821236 | 4.495718e-53 | -8.615850e-47 |
| Msa0269940 | Msa1062220 | 0.899470 | 1.920052e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062220 | MtrunA17_Chr8g0362511 | 79.032 | 310 | 32 | 1 | 4 | 280 | 62 | 371 | 5.63e-177 | 492 |
| Msa1062220 | MtrunA17_Chr5g0402821 | 47.284 | 313 | 109 | 5 | 10 | 272 | 16 | 322 | 9.83e-89 | 266 |
| Msa1062220 | MtrunA17_Chr2g0285481 | 39.597 | 149 | 89 | 1 | 2 | 149 | 14 | 162 | 1.02e-32 | 122 |
| Msa1062220 | MtrunA17_Chr1g0172741 | 39.597 | 149 | 89 | 1 | 2 | 149 | 14 | 162 | 1.15e-32 | 122 |
| Msa1062220 | MtrunA17_Chr8g0334551 | 31.884 | 207 | 118 | 4 | 10 | 216 | 22 | 205 | 4.61e-28 | 110 |
| Msa1062220 | MtrunA17_Chr3g0113081 | 26.792 | 265 | 167 | 9 | 1 | 258 | 374 | 618 | 3.45e-20 | 90.1 |
| Msa1062220 | MtrunA17_Chr3g0113081 | 32.090 | 134 | 89 | 2 | 10 | 143 | 185 | 316 | 2.26e-18 | 84.7 |
| Msa1062220 | MtrunA17_Chr3g0113081 | 30.645 | 124 | 84 | 2 | 10 | 133 | 8 | 129 | 1.89e-15 | 76.3 |
| Msa1062220 | MtrunA17_Chr2g0321391 | 45.122 | 82 | 45 | 0 | 68 | 149 | 3 | 84 | 6.69e-19 | 83.6 |
| Msa1062220 | MtrunA17_Chr5g0422691 | 40.217 | 92 | 54 | 1 | 2 | 92 | 14 | 105 | 2.40e-17 | 75.9 |
| Msa1062220 | MtrunA17_Chr7g0254281 | 42.466 | 73 | 42 | 0 | 200 | 272 | 15 | 87 | 4.82e-17 | 74.7 |
| Msa1062220 | MtrunA17_Chr3g0098031 | 58.929 | 56 | 23 | 0 | 109 | 164 | 1 | 56 | 7.69e-17 | 73.9 |
| Msa1062220 | MtrunA17_Chr5g0405761 | 25.180 | 278 | 186 | 6 | 1 | 261 | 41 | 313 | 6.37e-13 | 67.8 |
| Msa1062220 | MtrunA17_Chr1g0176881 | 27.500 | 120 | 86 | 1 | 16 | 135 | 198 | 316 | 5.88e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1062220 | AT5G05800.1 | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.99e-17 | 80.9 |
| Msa1062220 | AT5G05800.5 | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.99e-17 | 80.9 |
| Msa1062220 | AT5G05800.3 | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.99e-17 | 80.9 |
| Msa1062220 | AT5G05800.2 | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.99e-17 | 80.9 |
| Msa1062220 | AT5G05800.4 | 25.362 | 276 | 181 | 7 | 1 | 258 | 158 | 426 | 5.99e-17 | 80.9 |
Find 59 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTTTCTCTCCAATATT+TGG | 0.180945 | 7_2:+52856529 | None:intergenic |
| TAAGAAACCATCTAATATTT+AGG | 0.205786 | 7_2:-52856197 | None:intergenic |
| ACATAAGTCAAGTAAAATTT+TGG | 0.222616 | 7_2:+52857153 | None:intergenic |
| ACGACATGGAAACAATTAAT+TGG | 0.237993 | 7_2:-52856980 | Msa1062220:CDS |
| GATGAATTGGAATTCATATA+TGG | 0.262668 | 7_2:-52856738 | Msa1062220:CDS |
| TTCAATAATTTAACGCAATC+TGG | 0.268422 | 7_2:+52856367 | None:intergenic |
| AGAAAGGTTTCACCAAATAT+TGG | 0.287033 | 7_2:-52856541 | Msa1062220:CDS |
| TTTGGAATTTCGTGATGAAT+TGG | 0.307078 | 7_2:-52856751 | Msa1062220:CDS |
| GACCGGGCTTTCCACATTTA+CGG | 0.308674 | 7_2:+52857119 | None:intergenic |
| ATCTTAACCTAAATATTAGA+TGG | 0.348450 | 7_2:+52856190 | None:intergenic |
| AAAAGAGTCGAAGGAAGATT+TGG | 0.364686 | 7_2:-52856248 | Msa1062220:CDS |
| CAATTAATTGGTAAAGAAAC+AGG | 0.372346 | 7_2:-52856968 | Msa1062220:CDS |
| ATTGGTAAAGAAACAGGTTT+GGG | 0.383062 | 7_2:-52856962 | Msa1062220:CDS |
| AAAATTTCGCTATCAAGGTT+TGG | 0.385837 | 7_2:-52856769 | Msa1062220:CDS |
| ACACCAATGGACACCAGCTT+TGG | 0.388131 | 7_2:-52856694 | Msa1062220:CDS |
| TATTTAAAATTTCGCTATCA+AGG | 0.406698 | 7_2:-52856774 | Msa1062220:CDS |
| AATTGGTAAAGAAACAGGTT+TGG | 0.414579 | 7_2:-52856963 | Msa1062220:CDS |
| CGAAGGAAGATTTGGTAGAG+TGG | 0.418271 | 7_2:-52856240 | Msa1062220:CDS |
| CACCAATGGACACCAGCTTT+GGG | 0.429567 | 7_2:-52856693 | Msa1062220:CDS |
| TTGAAAAGTGCAAAGGATGA+TGG | 0.438052 | 7_2:-52856349 | Msa1062220:CDS |
| ATTAAGGTATATTGCAGCTA+TGG | 0.438851 | 7_2:-52857227 | None:intergenic |
| ATGAATTGGAATTCATATAT+GGG | 0.451875 | 7_2:-52856737 | Msa1062220:CDS |
| TGGTGACCACTTTAGCCCTC+TGG | 0.472733 | 7_2:-52856586 | Msa1062220:intron |
| CTTATTCCTAAAAGCAAGAC+CGG | 0.476233 | 7_2:+52857102 | None:intergenic |
| CATGGTGGGATGCTAAGATA+AGG | 0.494064 | 7_2:-52856901 | Msa1062220:CDS |
| AGGTCATAATGAAGTTGAAA+AGG | 0.499240 | 7_2:-52856434 | Msa1062220:CDS |
| ATATTGATGCTGATGCTTCA+TGG | 0.500130 | 7_2:-52856919 | Msa1062220:CDS |
| ATCCGTAAATGTGGAAAGCC+CGG | 0.502131 | 7_2:-52857121 | Msa1062220:CDS |
| ACAAAGGGAAAGGCAAAGGT+TGG | 0.515623 | 7_2:-52856508 | Msa1062220:CDS |
| CACCCAAAGCTGGTGTCCAT+TGG | 0.517260 | 7_2:+52856691 | None:intergenic |
| TGGATGCTTTGAGAAATGAT+TGG | 0.530048 | 7_2:-52857003 | Msa1062220:CDS |
| GTAAAGAAACAGGTTTGGGA+TGG | 0.538168 | 7_2:-52856958 | Msa1062220:CDS |
| ATTGGAGAGAAAGTGACAAA+GGG | 0.539994 | 7_2:-52856523 | Msa1062220:CDS |
| TCTAATGGCACACCCAAAGC+TGG | 0.551818 | 7_2:+52856681 | None:intergenic |
| AAAATTCAGTAAAAGCAACT+TGG | 0.557465 | 7_2:-52857192 | Msa1062220:CDS |
| TAAATTATTGAAAAGTGCAA+AGG | 0.562498 | 7_2:-52856356 | Msa1062220:CDS |
| ATGGTGGGATGCTAAGATAA+GGG | 0.562867 | 7_2:-52856900 | Msa1062220:intron |
| CAAAGGGAAAGGCAAAGGTT+GGG | 0.568855 | 7_2:-52856507 | Msa1062220:CDS |
| GCGGCCACCTCTCATGTCCA+TGG | 0.573543 | 7_2:-52856403 | Msa1062220:CDS |
| TGAGAAATGATTGGACGACA+TGG | 0.575579 | 7_2:-52856994 | Msa1062220:CDS |
| CTGGAATAGAGTACTCTCCA+TGG | 0.582152 | 7_2:+52856386 | None:intergenic |
| AATAACCTTAAAAGAGTCGA+AGG | 0.582919 | 7_2:-52856257 | Msa1062220:CDS |
| AGGTTTGGGATGGAATCCTC+AGG | 0.587284 | 7_2:-52856948 | Msa1062220:CDS |
| TATTGGAGAGAAAGTGACAA+AGG | 0.587956 | 7_2:-52856524 | Msa1062220:CDS |
| CGGTTAGTTGAAGCAGCTGA+AGG | 0.604811 | 7_2:-52856454 | Msa1062220:CDS |
| TGGCAACAAGTCAACACCAA+TGG | 0.615706 | 7_2:-52856707 | Msa1062220:CDS |
| GCATCAATATTTCCTACCTG+AGG | 0.624235 | 7_2:+52856932 | None:intergenic |
| AGTTGAAAAGGCTCAAATTG+CGG | 0.627899 | 7_2:-52856422 | Msa1062220:CDS |
| AGAGAAAGTGACAAAGGGAA+AGG | 0.634836 | 7_2:-52856518 | Msa1062220:CDS |
| AGTGACAAAGGGAAAGGCAA+AGG | 0.637371 | 7_2:-52856512 | Msa1062220:CDS |
| ATTCATATATGGGGATGCAG+TGG | 0.646143 | 7_2:-52856727 | Msa1062220:CDS |
| CTCTCCATGGACATGAGAGG+TGG | 0.646702 | 7_2:+52856399 | None:intergenic |
| GTACTCTCCATGGACATGAG+AGG | 0.646753 | 7_2:+52856396 | None:intergenic |
| TGATGCTGATGCTTCATGGT+GGG | 0.646760 | 7_2:-52856915 | Msa1062220:CDS |
| TTATTCCTAAAAGCAAGACC+GGG | 0.648563 | 7_2:+52857103 | None:intergenic |
| ATGGGTGAGATCCGTAAATG+TGG | 0.672000 | 7_2:-52857130 | Msa1062220:CDS |
| TGAATTGGAATTCATATATG+GGG | 0.675974 | 7_2:-52856736 | Msa1062220:CDS |
| TTGGGATGGAATCCTCAGGT+AGG | 0.678607 | 7_2:-52856944 | Msa1062220:CDS |
| TTGATGCTGATGCTTCATGG+TGG | 0.719368 | 7_2:-52856916 | Msa1062220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr7_2:52856602-52856621 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr7_2:52856601-52856620 | Msa1062220:intron | 15.0% |
| !! | AATAACAAGAGAAAATATTT+AGG | + | chr7_2:52856602-52856621 | None:intergenic | 15.0% |
| !!! | TAAATATTTTCTCTTGTTAT+TGG | - | chr7_2:52856601-52856620 | Msa1062220:intron | 15.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr7_2:52856268-52856287 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr7_2:52856269-52856288 | Msa1062220:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr7_2:52856270-52856289 | Msa1062220:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr7_2:52856644-52856663 | Msa1062220:intron | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr7_2:52856681-52856700 | Msa1062220:intron | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr7_2:52857062-52857081 | Msa1062220:CDS | 20.0% |
| !!! | ACATAAGTCAAGTAAAATTT+TGG | + | chr7_2:52856268-52856287 | None:intergenic | 20.0% |
| !!! | AATTTTACTTGACTTATGTA+TGG | - | chr7_2:52856269-52856288 | Msa1062220:CDS | 20.0% |
| !!! | ATTTTACTTGACTTATGTAT+GGG | - | chr7_2:52856270-52856289 | Msa1062220:CDS | 20.0% |
| !!! | TATTTAAAATTTCGCTATCA+AGG | - | chr7_2:52856644-52856663 | Msa1062220:intron | 20.0% |
| !! | ATGAATTGGAATTCATATAT+GGG | - | chr7_2:52856681-52856700 | Msa1062220:intron | 20.0% |
| !!! | TAAATTATTGAAAAGTGCAA+AGG | - | chr7_2:52857062-52857081 | Msa1062220:CDS | 20.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr7_2:52856226-52856245 | Msa1062220:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr7_2:52856258-52856277 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr7_2:52856322-52856341 | Msa1062220:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr7_2:52856323-52856342 | Msa1062220:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr7_2:52856395-52856414 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr7_2:52856395-52856414 | Msa1062220:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr7_2:52856450-52856469 | Msa1062220:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr7_2:52856680-52856699 | Msa1062220:intron | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr7_2:52856682-52856701 | Msa1062220:intron | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr7_2:52856755-52856774 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr7_2:52856812-52856831 | Msa1062220:intron | 25.0% |
| !! | TGAAACCTTTCTTTTCTTTT+TGG | + | chr7_2:52856869-52856888 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr7_2:52857054-52857073 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr7_2:52857158-52857177 | None:intergenic | 25.0% |
| ! | AAAATTCAGTAAAAGCAACT+TGG | - | chr7_2:52856226-52856245 | Msa1062220:CDS | 25.0% |
| !!! | AGTAAAATTTTGGTATCTGA+TGG | + | chr7_2:52856258-52856277 | None:intergenic | 25.0% |
| !!! | TTGCTTTTAGGAATAAGAAA+TGG | - | chr7_2:52856322-52856341 | Msa1062220:CDS | 25.0% |
| !!! | TGCTTTTAGGAATAAGAAAT+GGG | - | chr7_2:52856323-52856342 | Msa1062220:CDS | 25.0% |
| !!! | TTCTATTTTTCAACTGCTTT+TGG | + | chr7_2:52856395-52856414 | None:intergenic | 25.0% |
| ! | AAAGCAGTTGAAAAATAGAA+TGG | - | chr7_2:52856395-52856414 | Msa1062220:CDS | 25.0% |
| ! | CAATTAATTGGTAAAGAAAC+AGG | - | chr7_2:52856450-52856469 | Msa1062220:CDS | 25.0% |
| ! | GATGAATTGGAATTCATATA+TGG | - | chr7_2:52856680-52856699 | Msa1062220:intron | 25.0% |
| ! | TGAATTGGAATTCATATATG+GGG | - | chr7_2:52856682-52856701 | Msa1062220:intron | 25.0% |
| !! | TTTTTGCCATTAGATTCTAA+TGG | + | chr7_2:52856755-52856774 | None:intergenic | 25.0% |
| !! | GATGATAGTGAATTTGATAT+TGG | - | chr7_2:52856812-52856831 | Msa1062220:intron | 25.0% |
| !! | TGAAACCTTTCTTTTCTTTT+TGG | + | chr7_2:52856869-52856888 | None:intergenic | 25.0% |
| ! | TTCAATAATTTAACGCAATC+TGG | + | chr7_2:52857054-52857073 | None:intergenic | 25.0% |
| !!! | ACTCTTTTAAGGTTATTAGT+AGG | + | chr7_2:52857158-52857177 | None:intergenic | 25.0% |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr7_2:52856326-52856345 | Msa1062220:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr7_2:52856438-52856457 | Msa1062220:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr7_2:52856455-52856474 | Msa1062220:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr7_2:52856456-52856475 | Msa1062220:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr7_2:52856649-52856668 | Msa1062220:intron | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr7_2:52856667-52856686 | Msa1062220:intron | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr7_2:52856794-52856813 | None:intergenic | 30.0% |
| CTCAACCAAAAAGAAAAGAA+AGG | - | chr7_2:52856861-52856880 | Msa1062220:intron | 30.0% | |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr7_2:52856877-52856896 | Msa1062220:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr7_2:52856944-52856963 | Msa1062220:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr7_2:52856984-52857003 | Msa1062220:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr7_2:52857081-52857100 | Msa1062220:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr7_2:52857161-52857180 | Msa1062220:CDS | 30.0% | |
| !! | TTTTAGGAATAAGAAATGGG+AGG | - | chr7_2:52856326-52856345 | Msa1062220:CDS | 30.0% |
| ACGACATGGAAACAATTAAT+TGG | - | chr7_2:52856438-52856457 | Msa1062220:CDS | 30.0% | |
| AATTGGTAAAGAAACAGGTT+TGG | - | chr7_2:52856455-52856474 | Msa1062220:CDS | 30.0% | |
| ATTGGTAAAGAAACAGGTTT+GGG | - | chr7_2:52856456-52856475 | Msa1062220:CDS | 30.0% | |
| AAAATTTCGCTATCAAGGTT+TGG | - | chr7_2:52856649-52856668 | Msa1062220:intron | 30.0% | |
| ! | TTTGGAATTTCGTGATGAAT+TGG | - | chr7_2:52856667-52856686 | Msa1062220:intron | 30.0% |
| ! | TCAGAGTCAATTATTTCTTG+TGG | + | chr7_2:52856794-52856813 | None:intergenic | 30.0% |
| CTCAACCAAAAAGAAAAGAA+AGG | - | chr7_2:52856861-52856880 | Msa1062220:intron | 30.0% | |
| AGAAAGGTTTCACCAAATAT+TGG | - | chr7_2:52856877-52856896 | Msa1062220:intron | 30.0% | |
| CTATGAGAAAAACATTTGAG+CGG | - | chr7_2:52856944-52856963 | Msa1062220:CDS | 30.0% | |
| AGGTCATAATGAAGTTGAAA+AGG | - | chr7_2:52856984-52857003 | Msa1062220:CDS | 30.0% | |
| !!! | AAGGATGATGGTTTTTTGAA+TGG | - | chr7_2:52857081-52857100 | Msa1062220:CDS | 30.0% |
| AATAACCTTAAAAGAGTCGA+AGG | - | chr7_2:52857161-52857180 | Msa1062220:CDS | 30.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr7_2:52856318-52856337 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr7_2:52856319-52856338 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr7_2:52856415-52856434 | Msa1062220:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr7_2:52856499-52856518 | Msa1062220:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr7_2:52856610-52856629 | Msa1062220:intron | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr7_2:52856850-52856869 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr7_2:52856851-52856870 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr7_2:52856892-52856911 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr7_2:52856894-52856913 | Msa1062220:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr7_2:52856895-52856914 | Msa1062220:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr7_2:52856996-52857015 | Msa1062220:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr7_2:52857069-52857088 | Msa1062220:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr7_2:52857169-52857188 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr7_2:52857170-52857189 | Msa1062220:CDS | 35.0% | |
| TTATTCCTAAAAGCAAGACC+GGG | + | chr7_2:52856318-52856337 | None:intergenic | 35.0% | |
| CTTATTCCTAAAAGCAAGAC+CGG | + | chr7_2:52856319-52856338 | None:intergenic | 35.0% | |
| !! | TGGATGCTTTGAGAAATGAT+TGG | - | chr7_2:52856415-52856434 | Msa1062220:CDS | 35.0% |
| ATATTGATGCTGATGCTTCA+TGG | - | chr7_2:52856499-52856518 | Msa1062220:CDS | 35.0% | |
| !! | TCTCTTGTTATTGGTTATGC+AGG | - | chr7_2:52856610-52856629 | Msa1062220:intron | 35.0% |
| ! | TTGGTTGAGTATTTTCCAGA+GGG | + | chr7_2:52856850-52856869 | None:intergenic | 35.0% |
| ! | TTTGGTTGAGTATTTTCCAG+AGG | + | chr7_2:52856851-52856870 | None:intergenic | 35.0% |
| ! | GTCACTTTCTCTCCAATATT+TGG | + | chr7_2:52856892-52856911 | None:intergenic | 35.0% |
| TATTGGAGAGAAAGTGACAA+AGG | - | chr7_2:52856894-52856913 | Msa1062220:intron | 35.0% | |
| ATTGGAGAGAAAGTGACAAA+GGG | - | chr7_2:52856895-52856914 | Msa1062220:intron | 35.0% | |
| AGTTGAAAAGGCTCAAATTG+CGG | - | chr7_2:52856996-52857015 | Msa1062220:CDS | 35.0% | |
| ! | TTGAAAAGTGCAAAGGATGA+TGG | - | chr7_2:52857069-52857088 | Msa1062220:CDS | 35.0% |
| ! | ATCTTCCTTCGACTCTTTTA+AGG | + | chr7_2:52857169-52857188 | None:intergenic | 35.0% |
| AAAAGAGTCGAAGGAAGATT+TGG | - | chr7_2:52857170-52857189 | Msa1062220:CDS | 35.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr7_2:52856424-52856443 | Msa1062220:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr7_2:52856460-52856479 | Msa1062220:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr7_2:52856489-52856508 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr7_2:52856518-52856537 | Msa1062220:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr7_2:52856691-52856710 | Msa1062220:intron | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr7_2:52856746-52856765 | Msa1062220:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr7_2:52856841-52856860 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr7_2:52856900-52856919 | Msa1062220:intron | 40.0% | |
| TGAGAAATGATTGGACGACA+TGG | - | chr7_2:52856424-52856443 | Msa1062220:CDS | 40.0% | |
| GTAAAGAAACAGGTTTGGGA+TGG | - | chr7_2:52856460-52856479 | Msa1062220:CDS | 40.0% | |
| GCATCAATATTTCCTACCTG+AGG | + | chr7_2:52856489-52856508 | None:intergenic | 40.0% | |
| ! | ATGGTGGGATGCTAAGATAA+GGG | - | chr7_2:52856518-52856537 | Msa1062220:CDS | 40.0% |
| ATTCATATATGGGGATGCAG+TGG | - | chr7_2:52856691-52856710 | Msa1062220:intron | 40.0% | |
| ! | GGTGTGCCATTAGAATCTAA+TGG | - | chr7_2:52856746-52856765 | Msa1062220:CDS | 40.0% |
| ! | TATTTTCCAGAGGGCTAAAG+TGG | + | chr7_2:52856841-52856860 | None:intergenic | 40.0% |
| AGAGAAAGTGACAAAGGGAA+AGG | - | chr7_2:52856900-52856919 | Msa1062220:intron | 40.0% | |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr7_2:52856288-52856307 | Msa1062220:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr7_2:52856297-52856316 | Msa1062220:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr7_2:52856502-52856521 | Msa1062220:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr7_2:52856503-52856522 | Msa1062220:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr7_2:52856517-52856536 | Msa1062220:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr7_2:52856711-52856730 | Msa1062220:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr7_2:52856906-52856925 | Msa1062220:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr7_2:52856910-52856929 | Msa1062220:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr7_2:52856911-52856930 | Msa1062220:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr7_2:52857035-52857054 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr7_2:52857178-52857197 | Msa1062220:CDS | 45.0% |
| ATGGGTGAGATCCGTAAATG+TGG | - | chr7_2:52856288-52856307 | Msa1062220:CDS | 45.0% | |
| ATCCGTAAATGTGGAAAGCC+CGG | - | chr7_2:52856297-52856316 | Msa1062220:CDS | 45.0% | |
| TTGATGCTGATGCTTCATGG+TGG | - | chr7_2:52856502-52856521 | Msa1062220:CDS | 45.0% | |
| TGATGCTGATGCTTCATGGT+GGG | - | chr7_2:52856503-52856522 | Msa1062220:CDS | 45.0% | |
| ! | CATGGTGGGATGCTAAGATA+AGG | - | chr7_2:52856517-52856536 | Msa1062220:CDS | 45.0% |
| TGGCAACAAGTCAACACCAA+TGG | - | chr7_2:52856711-52856730 | Msa1062220:CDS | 45.0% | |
| AGTGACAAAGGGAAAGGCAA+AGG | - | chr7_2:52856906-52856925 | Msa1062220:CDS | 45.0% | |
| ACAAAGGGAAAGGCAAAGGT+TGG | - | chr7_2:52856910-52856929 | Msa1062220:CDS | 45.0% | |
| CAAAGGGAAAGGCAAAGGTT+GGG | - | chr7_2:52856911-52856930 | Msa1062220:CDS | 45.0% | |
| ! | CTGGAATAGAGTACTCTCCA+TGG | + | chr7_2:52857035-52857054 | None:intergenic | 45.0% |
| ! | CGAAGGAAGATTTGGTAGAG+TGG | - | chr7_2:52857178-52857197 | Msa1062220:CDS | 45.0% |
| GACCGGGCTTTCCACATTTA+CGG | + | chr7_2:52856302-52856321 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr7_2:52856310-52856329 | Msa1062220:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr7_2:52856470-52856489 | Msa1062220:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr7_2:52856474-52856493 | Msa1062220:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr7_2:52856724-52856743 | Msa1062220:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr7_2:52856725-52856744 | Msa1062220:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr7_2:52856740-52856759 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr7_2:52856964-52856983 | Msa1062220:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr7_2:52857025-52857044 | None:intergenic | 50.0% | |
| GACCGGGCTTTCCACATTTA+CGG | + | chr7_2:52856302-52856321 | None:intergenic | 50.0% | |
| !! | GAAAGCCCGGTCTTGCTTTT+AGG | - | chr7_2:52856310-52856329 | Msa1062220:CDS | 50.0% |
| ! | AGGTTTGGGATGGAATCCTC+AGG | - | chr7_2:52856470-52856489 | Msa1062220:CDS | 50.0% |
| TTGGGATGGAATCCTCAGGT+AGG | - | chr7_2:52856474-52856493 | Msa1062220:CDS | 50.0% | |
| ACACCAATGGACACCAGCTT+TGG | - | chr7_2:52856724-52856743 | Msa1062220:CDS | 50.0% | |
| CACCAATGGACACCAGCTTT+GGG | - | chr7_2:52856725-52856744 | Msa1062220:CDS | 50.0% | |
| TCTAATGGCACACCCAAAGC+TGG | + | chr7_2:52856740-52856759 | None:intergenic | 50.0% | |
| ! | CGGTTAGTTGAAGCAGCTGA+AGG | - | chr7_2:52856964-52856983 | Msa1062220:CDS | 50.0% |
| GTACTCTCCATGGACATGAG+AGG | + | chr7_2:52857025-52857044 | None:intergenic | 50.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr7_2:52856730-52856749 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr7_2:52856832-52856851 | Msa1062220:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr7_2:52857022-52857041 | None:intergenic | 55.0% | |
| CACCCAAAGCTGGTGTCCAT+TGG | + | chr7_2:52856730-52856749 | None:intergenic | 55.0% | |
| TGGTGACCACTTTAGCCCTC+TGG | - | chr7_2:52856832-52856851 | Msa1062220:intron | 55.0% | |
| CTCTCCATGGACATGAGAGG+TGG | + | chr7_2:52857022-52857041 | None:intergenic | 55.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr7_2:52857015-52857034 | Msa1062220:CDS | 65.0% | |
| GCGGCCACCTCTCATGTCCA+TGG | - | chr7_2:52857015-52857034 | Msa1062220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 52856198 | 52857242 | 52856198 | ID=Msa1062220;Name=Msa1062220 |
| chr7_2 | mRNA | 52856198 | 52857242 | 52856198 | ID=Msa1062220-mRNA-1;Parent=Msa1062220;Name=Msa1062220-mRNA-1;_AED=0.08;_eAED=0.08;_QI=12|0.5|0.33|1|1|1|3|0|280 |
| chr7_2 | exon | 52856198 | 52856593 | 52856198 | ID=Msa1062220-mRNA-1:exon:9551;Parent=Msa1062220-mRNA-1 |
| chr7_2 | exon | 52856692 | 52856808 | 52856692 | ID=Msa1062220-mRNA-1:exon:9550;Parent=Msa1062220-mRNA-1 |
| chr7_2 | exon | 52856901 | 52857242 | 52856901 | ID=Msa1062220-mRNA-1:exon:9549;Parent=Msa1062220-mRNA-1 |
| chr7_2 | five_prime_UTR | 52857231 | 52857242 | 52857231 | ID=Msa1062220-mRNA-1:five_prime_utr;Parent=Msa1062220-mRNA-1 |
| chr7_2 | CDS | 52856901 | 52857230 | 52856901 | ID=Msa1062220-mRNA-1:cds;Parent=Msa1062220-mRNA-1 |
| chr7_2 | CDS | 52856692 | 52856808 | 52856692 | ID=Msa1062220-mRNA-1:cds;Parent=Msa1062220-mRNA-1 |
| chr7_2 | CDS | 52856198 | 52856593 | 52856198 | ID=Msa1062220-mRNA-1:cds;Parent=Msa1062220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
