AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0385730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385730 MtrunA17_Chr3g0143671 99.632 544 2 0 1 544 1 544 0.0 1114
Msa0385730 MtrunA17_Chr1g0157341 85.055 542 77 1 7 544 2 543 0.0 942
Msa0385730 MtrunA17_Chr4g0038671 74.906 534 133 1 11 544 11 543 0.0 849
Msa0385730 MtrunA17_Chr4g0024861 71.042 518 150 0 23 540 20 537 0.0 793
Msa0385730 MtrunA17_Chr2g0322441 72.921 517 140 0 23 539 23 539 0.0 785
Msa0385730 MtrunA17_Chr4g0075071 70.872 539 156 1 7 544 7 545 0.0 763
Msa0385730 MtrunA17_Chr4g0024641 67.865 445 142 1 92 536 13 456 0.0 644
Msa0385730 MtrunA17_Chr4g0024641 59.302 86 35 0 455 540 871 956 2.42e-26 114
Msa0385730 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 499 580 6.97e-25 109
Msa0385730 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 561 642 6.97e-25 109
Msa0385730 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 623 704 6.97e-25 109
Msa0385730 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 685 766 6.97e-25 109
Msa0385730 MtrunA17_Chr4g0024641 59.756 82 33 0 455 536 809 890 6.97e-25 109
Msa0385730 MtrunA17_Chr4g0024641 58.537 82 34 0 455 536 437 518 6.23e-24 106
Msa0385730 MtrunA17_Chr4g0024641 58.537 82 34 0 455 536 747 828 7.85e-24 106
Msa0385730 MtrunA17_Chr8g0374271 60.928 517 199 2 25 540 26 540 0.0 644
Msa0385730 MtrunA17_Chr5g0402831 59.923 519 204 2 22 540 23 537 0.0 627
Msa0385730 MtrunA17_Chr8g0374261 56.809 514 219 3 24 536 23 534 0.0 609
Msa0385730 MtrunA17_Chr4g0043251 53.008 532 241 4 11 534 8 538 0.0 561
Msa0385730 MtrunA17_Chr4g0043261 52.052 536 249 5 3 534 1 532 0.0 560
Msa0385730 MtrunA17_Chr3g0121151 51.481 540 250 5 3 534 42 577 0.0 550
Msa0385730 MtrunA17_Chr3g0121161 51.296 540 251 5 3 534 42 577 0.0 547
Msa0385730 MtrunA17_Chr4g0056511 52.294 545 239 7 11 535 8 551 0.0 533
Msa0385730 MtrunA17_Chr3g0079321 51.705 528 234 7 27 534 26 552 1.01e-180 521
Msa0385730 MtrunA17_Chr7g0234061 52.632 532 226 9 27 537 26 552 6.63e-179 517
Msa0385730 MtrunA17_Chr3g0121171 51.481 540 250 5 3 534 577 1112 7.74e-177 550
Msa0385730 MtrunA17_Chr3g0121171 51.296 540 251 5 3 534 1152 1687 5.46e-176 548
Msa0385730 MtrunA17_Chr3g0121171 52.703 518 236 4 25 534 21 537 2.77e-174 543
Msa0385730 MtrunA17_Chr3g0121171 49.907 537 248 6 6 534 1730 2253 4.51e-165 517
Msa0385730 MtrunA17_Chr1g0197301 48.182 330 168 3 208 534 1 330 4.72e-96 295
Msa0385730 MtrunA17_Chr4g0075781 52.885 208 55 2 134 339 1 167 6.72e-61 198
Msa0385730 MtrunA17_Chr5g0404361 30.351 570 347 18 5 533 51 611 1.84e-60 210
Msa0385730 MtrunA17_Chr5g0404341 29.550 555 335 19 20 533 27 566 2.59e-57 201
Msa0385730 MtrunA17_Chr3g0104061 28.014 564 363 13 5 533 1 556 9.62e-55 193
Msa0385730 MtrunA17_Chr5g0429511 27.866 567 364 16 3 533 1 558 8.82e-54 191
Msa0385730 MtrunA17_Chr5g0436461 28.757 539 341 13 30 533 24 554 1.08e-53 191
Msa0385730 MtrunA17_Chr3g0118321 27.504 589 345 22 5 537 4 566 2.45e-51 184
Msa0385730 MtrunA17_Chr4g0005921 27.437 554 365 12 11 533 10 557 6.53e-50 180
Msa0385730 MtrunA17_Chr1g0197311 40.928 237 100 5 15 212 8 243 5.45e-49 169
Msa0385730 MtrunA17_Chr8g0382691 25.818 581 335 18 20 538 26 572 8.30e-44 164
Msa0385730 MtrunA17_Chr3g0118331 25.823 577 361 17 10 537 7 565 1.59e-43 163
Msa0385730 MtrunA17_Chr5g0431581 28.846 572 342 21 12 533 4 560 2.43e-42 159
Msa0385730 MtrunA17_Chr3g0114211 28.367 490 303 14 51 499 54 536 1.37e-40 154
Msa0385730 MtrunA17_Chr7g0237441 24.357 583 380 16 2 533 8 580 4.03e-40 153
Msa0385730 MtrunA17_Chr2g0278811 26.860 551 333 17 51 533 59 607 1.57e-39 152
Msa0385730 MtrunA17_Chr8g0346581 26.121 513 341 11 30 506 34 544 1.19e-38 149
Msa0385730 MtrunA17_Chr7g0240991 28.827 503 299 20 47 498 42 536 2.03e-38 148
Msa0385730 MtrunA17_Chr7g0238351 23.827 554 367 15 30 533 33 581 9.11e-37 144
Msa0385730 MtrunA17_Chr7g0237491 24.368 554 363 17 30 533 33 580 2.10e-36 142
Msa0385730 MtrunA17_Chr5g0437681 25.992 504 309 15 48 499 42 533 1.57e-35 140
Msa0385730 MtrunA17_Chr7g0238941 24.682 551 362 16 30 533 34 578 4.77e-35 139
Msa0385730 MtrunA17_Chr7g0238981 25.095 526 339 16 21 499 42 559 8.11e-34 135
Msa0385730 MtrunA17_Chr7g0240971 25.824 546 336 18 1 493 1 530 1.81e-33 134
Msa0385730 MtrunA17_Chr4g0031901 25.382 524 320 18 29 499 46 551 4.29e-33 133
Msa0385730 MtrunA17_Chr4g0024651 82.812 64 11 0 23 86 20 83 2.66e-32 119
Msa0385730 MtrunA17_Chr4g0008521 26.316 551 347 16 34 533 30 572 9.68e-32 129
Msa0385730 MtrunA17_Chr3g0118351 22.029 345 217 9 233 537 5 337 1.81e-19 90.1
Msa0385730 MtrunA17_Chr3g0133871 29.714 175 119 4 44 216 46 218 1.76e-18 84.7
Msa0385730 MtrunA17_Chr3g0118341 32.941 170 104 7 11 175 8 172 1.30e-17 81.6
Msa0385730 MtrunA17_Chr3g0133861 28.803 309 177 12 227 499 5 306 1.07e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0385730 AT1G76160.1 79.777 539 108 1 6 544 4 541 0.0 908
Msa0385730 AT1G41830.1 79.104 536 111 1 9 544 8 542 0.0 894
Msa0385730 AT1G21850.1 74.187 523 133 2 19 541 18 538 0.0 814
Msa0385730 AT1G21860.1 70.130 539 155 3 2 540 5 537 0.0 796
Msa0385730 AT4G22010.1 69.444 540 161 2 6 544 5 541 0.0 781
Msa0385730 AT4G38420.1 67.844 538 167 3 12 543 12 549 0.0 760
Msa0385730 AT4G28090.1 62.152 539 192 6 9 540 8 541 0.0 692
Msa0385730 AT4G38420.3 66.596 470 151 3 12 475 12 481 0.0 645
Msa0385730 AT5G66920.1 58.189 519 215 1 22 540 29 545 0.0 637
Msa0385730 AT4G38420.2 67.043 443 140 3 12 448 12 454 0.0 608
Msa0385730 AT1G55570.1 54.917 539 233 4 10 539 9 546 0.0 592
Msa0385730 AT3G13400.2 54.851 536 232 5 11 538 9 542 0.0 582
Msa0385730 AT3G13400.1 54.851 536 232 5 11 538 9 542 0.0 582
Msa0385730 AT1G55560.1 53.918 536 237 5 11 538 8 541 0.0 578
Msa0385730 AT4G37160.1 53.817 524 236 3 22 544 23 541 0.0 572
Msa0385730 AT2G23630.2 54.943 526 233 3 17 542 23 544 0.0 569
Msa0385730 AT2G23630.1 54.943 526 233 3 17 542 18 539 0.0 569
Msa0385730 AT3G13390.1 55.556 522 222 4 26 538 24 544 0.0 568
Msa0385730 AT5G48450.1 52.865 541 238 10 12 537 8 546 0.0 546
Msa0385730 AT5G48450.2 52.865 541 238 10 12 537 8 546 0.0 546
Msa0385730 AT4G12420.1 52.102 547 241 7 11 537 6 551 0.0 544
Msa0385730 AT4G12420.2 52.102 547 241 7 11 537 6 551 0.0 544
Msa0385730 AT1G75790.1 49.534 537 260 3 11 536 8 544 0.0 526
Msa0385730 AT4G25240.2 50.452 553 253 8 1 534 1 551 0.0 525
Msa0385730 AT4G25240.1 50.452 553 253 8 1 534 1 551 0.0 525
Msa0385730 AT5G51480.1 49.813 536 248 9 19 534 17 551 0.0 525
Msa0385730 AT4G37160.2 54.673 428 192 2 22 448 23 449 1.56e-165 478
Msa0385730 AT4G39830.1 28.857 551 325 15 11 506 17 555 2.09e-55 196
Msa0385730 AT2G38080.1 27.339 545 352 13 25 533 22 558 4.92e-54 192
Msa0385730 AT5G58910.2 28.196 571 352 16 11 533 7 567 1.84e-52 188
Msa0385730 AT5G21105.1 27.586 551 326 16 12 507 22 554 1.11e-51 186
Msa0385730 AT5G03260.1 28.470 562 352 18 11 533 7 557 1.12e-51 186
Msa0385730 AT5G58910.3 29.032 527 320 15 51 533 50 566 6.20e-51 184
Msa0385730 AT5G21105.3 28.037 535 312 16 12 491 22 538 2.99e-50 181
Msa0385730 AT5G01190.1 27.580 533 354 12 32 533 27 558 1.20e-49 180
Msa0385730 AT5G21100.1 26.715 554 333 17 34 534 28 561 2.56e-49 179
Msa0385730 AT5G01190.2 28.210 514 337 12 51 533 32 544 4.16e-49 178
Msa0385730 AT5G58910.1 28.463 527 316 16 51 533 14 523 1.46e-46 171
Msa0385730 AT2G46570.1 25.603 539 352 13 30 527 32 562 1.89e-41 157
Msa0385730 AT4G39830.3 28.942 463 263 14 98 506 8 458 4.86e-41 155
Msa0385730 AT4G39830.2 28.942 463 263 14 98 506 10 460 5.76e-41 154
Msa0385730 AT2G30210.1 27.788 529 331 16 10 493 8 530 9.61e-41 155
Msa0385730 AT5G05390.1 28.138 494 314 13 44 499 41 531 7.76e-40 152
Msa0385730 AT5G09360.1 28.719 484 303 13 51 498 57 534 1.13e-39 152
Msa0385730 AT5G01050.1 25.508 541 348 13 41 535 39 570 1.17e-38 149
Msa0385730 AT5G01040.1 26.160 539 345 14 41 535 39 568 7.23e-38 147
Msa0385730 AT2G29130.1 25.501 549 359 17 30 533 30 573 9.68e-38 147
Msa0385730 AT5G48100.1 27.146 501 315 16 51 507 43 537 2.50e-37 145
Msa0385730 AT3G09220.1 26.769 523 338 13 10 493 11 527 3.28e-37 145
Msa0385730 AT4G39830.4 28.078 463 254 14 98 506 10 447 9.39e-37 142
Msa0385730 AT5G07130.1 28.063 506 306 16 51 506 45 542 1.34e-36 143
Msa0385730 AT1G18140.1 26.731 520 314 19 32 493 31 541 2.81e-35 140
Msa0385730 AT2G40370.1 25.174 576 375 15 12 533 7 580 3.50e-34 137
Msa0385730 AT2G46570.2 25.519 482 310 13 87 527 4 477 2.35e-33 133
Msa0385730 AT5G21105.2 28.746 327 194 9 206 507 51 363 1.27e-31 126
Msa0385730 AT3G09220.2 26.107 429 278 11 103 493 3 430 1.99e-26 112
Msa0385730 AT5G07130.2 27.155 464 280 16 93 506 2 457 8.48e-26 111
Msa0385730 AT5G07130.3 27.155 464 280 16 93 506 2 457 8.48e-26 111
Msa0385730 AT5G60020.2 25.784 287 194 7 5 279 6 285 3.19e-24 107
Msa0385730 AT5G60020.1 25.784 287 194 7 5 279 6 285 3.35e-24 107
Msa0385730 AT5G60020.3 27.386 241 162 6 51 279 14 253 1.12e-23 105

Find 192 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAAGCAGCTGGCGGTTT+TGG 0.198928 3_1:-89423540 Msa0385730:CDS
TTCATTTGATGTATTGAATA+TGG 0.237506 3_1:-89418761 Msa0385730:three_prime_UTR
AAATAGTTGTAAATGTTAAT+TGG 0.242479 3_1:+89425480 None:intergenic
GGAGATTACACTGTCCTTAT+TGG 0.249934 3_1:-89423462 Msa0385730:CDS
CCACAGAGACGTGCATTCTT+TGG 0.252281 3_1:+89419136 None:intergenic
GAACAATGTTCTCGTTGTTT+TGG 0.267342 3_1:+89420012 None:intergenic
ACCAGTATTATTATAAAGTA+TGG 0.269501 3_1:-89418832 Msa0385730:three_prime_UTR
TTCCAGTTGAAGAATTTATA+AGG 0.277879 3_1:+89425316 None:intergenic
GGCTACTCTTTCTTTGTTGT+TGG 0.288891 3_1:-89419972 Msa0385730:CDS
GGAACTTGAGGACCGAGTTT+TGG 0.289721 3_1:-89419237 Msa0385730:CDS
GGGAAAGGAACTGGAATTCT+AGG 0.292928 3_1:+89423495 None:intergenic
AGCTCTCCTGGTCAGGTTAA+TGG 0.304843 3_1:-89420224 Msa0385730:CDS
TCATTCGAAGATGGTGTTTC+GGG 0.308208 3_1:-89423660 Msa0385730:CDS
CTCATTCGAAGATGGTGTTT+CGG 0.314795 3_1:-89423661 Msa0385730:CDS
AACTCTGCAGGCGCAGTATC+AGG 0.316792 3_1:-89420736 Msa0385730:CDS
GTGTAATCTCCAGCTGGTTC+AGG 0.327562 3_1:+89423474 None:intergenic
ATCCTTATAAATTCTTCAAC+TGG 0.330656 3_1:-89425318 Msa0385730:CDS
CTTCAAGTGAAGGATCAAAT+TGG 0.340873 3_1:-89423594 Msa0385730:CDS
TGGTAGGATCCTTGTGGGTT+AGG 0.342056 3_1:+89420287 None:intergenic
GTTCAGAGCTATCATCTTGA+TGG 0.346311 3_1:-89419993 Msa0385730:CDS
TAAAGGTATATCCCTATTCA+TGG 0.349134 3_1:-89419297 Msa0385730:intron
TTGATCAATGGGCAATTTCC+TGG 0.354638 3_1:-89425118 Msa0385730:CDS
ATCAATGGTCGTGGACCTAA+TGG 0.358266 3_1:-89421138 Msa0385730:CDS
ATAAATAGCCGTCCATGAAT+AGG 0.359487 3_1:+89419285 None:intergenic
TTGAAGCTTAAGAGCCTGTT+TGG 0.360513 3_1:-89418658 Msa0385730:three_prime_UTR
AAGTTCCTCCCTGGTGGGAT+GGG 0.362034 3_1:+89423627 None:intergenic
GCTACTCTTTCTTTGTTGTT+GGG 0.364251 3_1:-89419971 Msa0385730:intron
GCGAGCTTAAGAGGCGTGTC+TGG 0.366650 3_1:+89420161 None:intergenic
AAAATTGAAGGGGATTCATT+TGG 0.371109 3_1:+89425648 None:intergenic
GGGAGGGGTCAGAAATGATT+AGG 0.372948 3_1:+89425542 None:intergenic
CACAACAAAGACAATCATTC+TGG 0.374461 3_1:-89420249 Msa0385730:CDS
GATCCTTGTGGGTTAGGCCT+TGG 0.380517 3_1:+89420293 None:intergenic
TAGGTCCACGACCATTGATT+AGG 0.384593 3_1:+89421142 None:intergenic
ACGTTGAATGATAATCCATT+AGG 0.386904 3_1:+89421123 None:intergenic
TAAACCTTTGCTAGCTCAAA+GGG 0.388940 3_1:+89419087 None:intergenic
ACCATACTTTATAATAATAC+TGG 0.392296 3_1:+89418831 None:intergenic
GTTAATGGCAAGCAAAGATA+TGG 0.394297 3_1:-89420209 Msa0385730:CDS
ACACTGTCCTTATTGGTGAT+TGG 0.395975 3_1:-89423455 Msa0385730:CDS
TACAGGGTATATTGATCAAT+GGG 0.402058 3_1:-89425129 Msa0385730:intron
CGAATGAGTTCCTTCTCTGC+TGG 0.403249 3_1:+89423676 None:intergenic
AAGTAATCAGCGAGCTTAAG+AGG 0.406604 3_1:+89420152 None:intergenic
ACTTGTACCAATCACCAATA+AGG 0.411862 3_1:+89423448 None:intergenic
ATCATTCTGGCTAGCTCTCC+TGG 0.412395 3_1:-89420236 Msa0385730:CDS
TAAATAGCCGTCCATGAATA+GGG 0.412871 3_1:+89419286 None:intergenic
CTTCTACCAACTTCAGTTTG+TGG 0.415762 3_1:+89420929 None:intergenic
AATACCTGATTGAGCGGGCT+TGG 0.429385 3_1:+89420668 None:intergenic
TCTGGCTAGCTCTCCTGGTC+AGG 0.435795 3_1:-89420231 Msa0385730:CDS
GAAGTTCCTCCCTGGTGGGA+TGG 0.436120 3_1:+89423626 None:intergenic
GCCTTGGTCCACTTGCTGTA+AGG 0.436164 3_1:+89420309 None:intergenic
TTACAGGGTATATTGATCAA+TGG 0.440666 3_1:-89425130 Msa0385730:intron
GCTGGTTCAGGGAAAGGAAC+TGG 0.441020 3_1:+89423486 None:intergenic
TGAACCAAGCCCGCTCAATC+AGG 0.441372 3_1:-89420672 Msa0385730:intron
AGACGTGCATTCTTTGGAAT+AGG 0.443501 3_1:+89419142 None:intergenic
ATTGAAAGCCCATCTTGATA+AGG 0.446007 3_1:-89421193 Msa0385730:CDS
AACTGCTGATCAACCTTCTC+AGG 0.451706 3_1:-89420830 Msa0385730:CDS
GACCAATCAACTTGGATTGT+AGG 0.454328 3_1:+89420697 None:intergenic
TTGAAAGCCCATCTTGATAA+GGG 0.458638 3_1:-89421192 Msa0385730:CDS
TGGACAACTTCTAGCAGAAA+CGG 0.460958 3_1:-89419636 Msa0385730:CDS
GTTCCTTTCCCTGAACCAGC+TGG 0.461491 3_1:-89423483 Msa0385730:CDS
ATTAGGACTCCATCAGGTAT+AGG 0.466437 3_1:+89421159 None:intergenic
AGTTCCTCCCTGGTGGGATG+GGG 0.469341 3_1:+89423628 None:intergenic
TAAAAGAGAGGGAAAATTGA+AGG 0.469894 3_1:+89425636 None:intergenic
ACTCTCAATTTAGCTGCTGT+TGG 0.471199 3_1:-89425394 Msa0385730:CDS
GCTTCTTTCCCTTATCAAGA+TGG 0.472069 3_1:+89421184 None:intergenic
CTTCTTTCCCTTATCAAGAT+GGG 0.472616 3_1:+89421185 None:intergenic
AAACGCGTAAATAAAATTGT+TGG 0.475981 3_1:+89419197 None:intergenic
TTTGTAACAGAATGAATGTC+TGG 0.477062 3_1:+89425094 None:intergenic
TACGGTGACATTTACCCACT+TGG 0.481704 3_1:-89425286 Msa0385730:CDS
CGTCTCTGTGGTAGGGCAAG+TGG 0.486667 3_1:-89419124 Msa0385730:CDS
TGTAATCTCCAGCTGGTTCA+GGG 0.488077 3_1:+89423475 None:intergenic
AAGACACCGCGGAAGTGAAA+AGG 0.488846 3_1:+89418703 None:intergenic
CCACAAGGATCCTACCATTA+CGG 0.488883 3_1:-89420281 Msa0385730:CDS
TTCAACTGGAATGTTACTTA+CGG 0.490501 3_1:-89425304 Msa0385730:CDS
TGCTTGCCATTAACCTGACC+AGG 0.497002 3_1:+89420218 None:intergenic
GGAGGGGTCAGAAATGATTA+GGG 0.500859 3_1:+89425543 None:intergenic
CCCACTTGGAGTTCGTCAAA+GGG 0.500885 3_1:-89425272 Msa0385730:intron
GACCTACAATCCAAGTTGAT+TGG 0.501737 3_1:-89420699 Msa0385730:CDS
GTCTCTGTGGTAGGGCAAGT+GGG 0.506135 3_1:-89419123 Msa0385730:CDS
CAGGAAAGACTTATAGACTT+AGG 0.506224 3_1:-89420999 Msa0385730:CDS
CTCCTCACTTGATGTTCATG+TGG 0.506285 3_1:-89420875 Msa0385730:CDS
ATTGTATCATACCGTATGGT+TGG 0.507927 3_1:+89423425 None:intergenic
ACAACATGCCCCATCCCACC+AGG 0.510773 3_1:-89423636 Msa0385730:CDS
TCTCCAGCTGGTTCAGGGAA+AGG 0.511026 3_1:+89423480 None:intergenic
ACCCACTTGGAGTTCGTCAA+AGG 0.514899 3_1:-89425273 Msa0385730:CDS
CTTCGCTATAGCAACTCTGC+AGG 0.516465 3_1:-89420748 Msa0385730:CDS
TCAAAACCACAAACTGAAGT+TGG 0.517789 3_1:-89420935 Msa0385730:CDS
GGACAACTTCTAGCAGAAAC+GGG 0.518926 3_1:-89419635 Msa0385730:CDS
AGTGGTGGTGAGAATCTTAG+AGG 0.523161 3_1:+89420777 None:intergenic
ACTTGGATTGTAGGTCCACC+AGG 0.525149 3_1:+89420706 None:intergenic
ATGAACCCTTTCTCATCTCA+TGG 0.525350 3_1:-89425036 Msa0385730:intron
CAAACTGAAGTTGGTAGAAG+TGG 0.526063 3_1:-89420926 Msa0385730:CDS
AGGACTAACCTTACAGCAAG+TGG 0.527132 3_1:-89420317 Msa0385730:CDS
CCTGATGGAGTCCTAATCAA+TGG 0.528672 3_1:-89421153 Msa0385730:CDS
TCACAGATGTGTCAAGGTAA+AGG 0.529173 3_1:+89420072 None:intergenic
CTAGCATTTCAGAAAGCAGC+TGG 0.529779 3_1:-89423549 Msa0385730:CDS
GGTTCAAAGACCAATCAACT+TGG 0.532843 3_1:+89420689 None:intergenic
CTTGTACCATGAGATGAGAA+AGG 0.533419 3_1:+89425030 None:intergenic
GCTGATTACTTCAAAATCTC+CGG 0.535779 3_1:-89420140 Msa0385730:CDS
CGAGCTTAAGAGGCGTGTCT+GGG 0.536643 3_1:+89420162 None:intergenic
AGAATGCACGTCTCTGTGGT+AGG 0.539128 3_1:-89419132 Msa0385730:CDS
TTAAACCTTTGCTAGCTCAA+AGG 0.539316 3_1:+89419086 None:intergenic
TAGGGAGGTGCGGTGCAAGA+AGG 0.541201 3_1:+89425561 None:intergenic
ATTTCAATGTGTAGTATGGA+TGG 0.541372 3_1:-89419666 Msa0385730:intron
AAGAAGCTTCCTATACCTGA+TGG 0.542552 3_1:-89421168 Msa0385730:CDS
TCTGAGAGACCCACTGGTGG+TGG 0.543627 3_1:-89420095 Msa0385730:CDS
TGCGGTGCAAGAAGGGACTA+AGG 0.544701 3_1:+89425569 None:intergenic
AAGGTAAAGGCCACCACCAG+TGG 0.545521 3_1:+89420085 None:intergenic
AGGAAACTCGTCTCTGATTG+AGG 0.545951 3_1:+89419162 None:intergenic
CCATTGATTAGGACTCCATC+AGG 0.546662 3_1:+89421153 None:intergenic
AAAAGAGAGGGAAAATTGAA+GGG 0.549950 3_1:+89425637 None:intergenic
GTGACAAGGATTGCAGAAGT+TGG 0.550179 3_1:-89418810 Msa0385730:three_prime_UTR
AAGATTCTAGATAATACAAA+GGG 0.551114 3_1:+89418855 None:intergenic
CATCCATTCCATGCTTGAGA+AGG 0.551848 3_1:-89419060 Msa0385730:three_prime_UTR
TTGAAGGGGATTCATTTGGA+AGG 0.552658 3_1:+89425652 None:intergenic
AGAAGGAACTCATTCGAAGA+TGG 0.555890 3_1:-89423669 Msa0385730:CDS
CGTAATGGTAGGATCCTTGT+GGG 0.556156 3_1:+89420282 None:intergenic
CTAGAATGCCTTCTCAAGCA+TGG 0.557137 3_1:+89419052 None:intergenic
AGGGAGGTGCGGTGCAAGAA+GGG 0.557743 3_1:+89425562 None:intergenic
GTAAGCATTGCCGCGTAGAG+AGG 0.558899 3_1:-89425454 Msa0385730:five_prime_UTR
GGAATGGGATCCAGCAGAGA+AGG 0.564212 3_1:-89423686 Msa0385730:CDS
GCTTTCTGAAATGCTAGAGA+TGG 0.570090 3_1:+89423555 None:intergenic
TTGTACCATGAGATGAGAAA+GGG 0.571758 3_1:+89425031 None:intergenic
TGTTGAAGACATTGATAATG+AGG 0.576283 3_1:+89425065 None:intergenic
ATGCCTTCTCAAGCATGGAA+TGG 0.576826 3_1:+89419057 None:intergenic
AGCATATCTGAGAGACCCAC+TGG 0.578496 3_1:-89420101 Msa0385730:CDS
CACTTGACAACGTTGGAATG+TGG 0.580641 3_1:-89419258 Msa0385730:CDS
CACTTATATACTTCAAGTGA+AGG 0.581224 3_1:-89423604 Msa0385730:CDS
TATGTTGCACTTGACAACGT+TGG 0.582455 3_1:-89419265 Msa0385730:CDS
GGAGTCCTAATCAATGGTCG+TGG 0.582546 3_1:-89421147 Msa0385730:CDS
AAAATGTTAAAATAAAAGAG+AGG 0.585654 3_1:+89425624 None:intergenic
ATACTGTCGTGCCCAAAACT+CGG 0.586339 3_1:+89419225 None:intergenic
TTATCATTCAACGTTGAACA+AGG 0.591618 3_1:-89421114 Msa0385730:intron
AATCTTAGAGGAGAATCTTG+TGG 0.591739 3_1:+89420789 None:intergenic
AGGACAGTGTAATCTCCAGC+TGG 0.591788 3_1:+89423468 None:intergenic
GAATGCACGTCTCTGTGGTA+GGG 0.593245 3_1:-89419131 Msa0385730:CDS
AAATGTTAAAATAAAAGAGA+GGG 0.593942 3_1:+89425625 None:intergenic
GTGGTCGTTCTTGATACGAC+AGG 0.597343 3_1:+89418950 None:intergenic
ACCCTTTGACGAACTCCAAG+TGG 0.599197 3_1:+89425271 None:intergenic
AACCTTTGCTAGCTCAAAGG+GGG 0.603610 3_1:+89419089 None:intergenic
AGTAGCAACACATAGAAGCA+AGG 0.603929 3_1:+89425369 None:intergenic
TTGTGTTTATGAGACCGTAA+TGG 0.605518 3_1:+89420267 None:intergenic
ACAGAATGAATGTCTGGACC+AGG 0.605888 3_1:+89425100 None:intergenic
CTGAAGTTGGTAGAAGTGGA+AGG 0.607607 3_1:-89420922 Msa0385730:CDS
AGTGAAATACCTGATTGAGC+GGG 0.607815 3_1:+89420663 None:intergenic
AGTAGCGCGTTGCACCACTC+AGG 0.609268 3_1:-89419595 Msa0385730:intron
ATATAAGTGAAGTTCCTCCC+TGG 0.613485 3_1:+89423618 None:intergenic
CCGTAATGGTAGGATCCTTG+TGG 0.613529 3_1:+89420281 None:intergenic
AAGTGAAATACCTGATTGAG+CGG 0.617943 3_1:+89420662 None:intergenic
GTCTGAAAGACCTCAGCTCG+AGG 0.618688 3_1:-89418918 Msa0385730:three_prime_UTR
ACGTTGGAATGTGGAACTTG+AGG 0.618713 3_1:-89419249 Msa0385730:CDS
ATAGCGAAGCACCGCAGTGG+TGG 0.618940 3_1:+89420762 None:intergenic
ACAATGTAGTAGTCCTGAGA+AGG 0.622508 3_1:+89420817 None:intergenic
GTTTATGAGACCGTAATGGT+AGG 0.623341 3_1:+89420271 None:intergenic
TATTATAAAGTATGGTGACA+AGG 0.623446 3_1:-89418824 Msa0385730:three_prime_UTR
TTGGTACAAGTCCAACCATA+CGG 0.625373 3_1:-89423436 Msa0385730:intron
TAAGATTCTAGATAATACAA+AGG 0.625730 3_1:+89418854 None:intergenic
TCCTCACTTGATGTTCATGT+GGG 0.629604 3_1:-89420874 Msa0385730:CDS
TAAGTGAAGTTCCTCCCTGG+TGG 0.629747 3_1:+89423621 None:intergenic
AAGAATGTGACCTCGAGCTG+AGG 0.629756 3_1:+89418908 None:intergenic
CTTGGATTGTAGGTCCACCA+GGG 0.631318 3_1:+89420707 None:intergenic
AAGTGAAGTTCCTCCCTGGT+GGG 0.631783 3_1:+89423622 None:intergenic
AAAGAGAGGGAAAATTGAAG+GGG 0.633156 3_1:+89425638 None:intergenic
CTTGCATCACAGATGTGTCA+AGG 0.635259 3_1:+89420066 None:intergenic
GGTATATCCCTATTCATGGA+CGG 0.635653 3_1:-89419293 Msa0385730:CDS
CCAAAGAATGCACGTCTCTG+TGG 0.641933 3_1:-89419136 Msa0385730:CDS
ACCTTACAGCAAGTGGACCA+AGG 0.643171 3_1:-89420310 Msa0385730:CDS
CAGAAATGATTAGGGAGGTG+CGG 0.649286 3_1:+89425551 None:intergenic
GAGGCATTAGGATACTCAGT+AGG 0.651245 3_1:-89423518 Msa0385730:CDS
AACATCAAGTGAGGAGTACG+TGG 0.656057 3_1:+89420882 None:intergenic
AGGTAAAGGCCACCACCAGT+GGG 0.656498 3_1:+89420086 None:intergenic
GGACCAAGGCCTAACCCACA+AGG 0.659246 3_1:-89420296 Msa0385730:CDS
CCCTTTGACGAACTCCAAGT+GGG 0.661178 3_1:+89425272 None:intergenic
TCAATGTGTAGTATGGATGG+AGG 0.663408 3_1:-89419663 Msa0385730:intron
GCATTTCAGAAAGCAGCTGG+CGG 0.666254 3_1:-89423546 Msa0385730:CDS
TTCTCAGGACTACTACATTG+TGG 0.670612 3_1:-89420815 Msa0385730:CDS
CAACATGCCCCATCCCACCA+GGG 0.673364 3_1:-89423635 Msa0385730:CDS
TAGACTTAGGATATCAAACG+TGG 0.675596 3_1:-89420986 Msa0385730:CDS
TCCCACATGAACATCAAGTG+AGG 0.677217 3_1:+89420873 None:intergenic
AAAACTCTTGCCTCTCTACG+CGG 0.677360 3_1:+89425444 None:intergenic
TAATATGATTCTCACCTGAG+TGG 0.682067 3_1:+89419581 None:intergenic
TTGGATTGTAGGTCCACCAG+GGG 0.683406 3_1:+89420708 None:intergenic
AAACCTTTGCTAGCTCAAAG+GGG 0.688074 3_1:+89419088 None:intergenic
GCTATAGCGAAGCACCGCAG+TGG 0.699087 3_1:+89420759 None:intergenic
AGACTTAGGATATCAAACGT+GGG 0.700576 3_1:-89420985 Msa0385730:CDS
AGGTCTTTCAGACTCAAACG+TGG 0.710556 3_1:+89418928 None:intergenic
GGGGTCAGAAATGATTAGGG+AGG 0.714872 3_1:+89425546 None:intergenic
ATATCTGAGAGACCCACTGG+TGG 0.716405 3_1:-89420098 Msa0385730:CDS
TCTTTCAGACTCAAACGTGG+TGG 0.724306 3_1:+89418931 None:intergenic
CATGCCCCATCCCACCAGGG+AGG 0.735313 3_1:-89423632 Msa0385730:CDS
GTAGTATGGATGGAGGACAG+TGG 0.742907 3_1:-89419656 Msa0385730:intron
TGGATTGTAGGTCCACCAGG+GGG 0.761885 3_1:+89420709 None:intergenic
TAAGATTCTCACCACCACTG+CGG 0.773633 3_1:-89420773 Msa0385730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAATAAAAAAAAA+TGG + chr3_1:89419145-89419164 None:intergenic 0.0%
!!! CTTATAAATCAATTTTAAAA+TGG + chr3_1:89419336-89419355 None:intergenic 10.0%
!! AAATTAAAACATTTAAAAAG+TGG + chr3_1:89420029-89420048 None:intergenic 10.0%
!!! TTAAAATGAATTTTTTTACA+AGG - chr3_1:89421505-89421524 Msa0385730:intron 10.0%
!!! CAGTTTTTTTTTTTTATATA+AGG + chr3_1:89422660-89422679 None:intergenic 10.0%
!!! TTATTTAAAAAAACTTTTCT+TGG - chr3_1:89422692-89422711 Msa0385730:intron 10.0%
!! AAATGTTAAAATAAAAGAGA+GGG + chr3_1:89418671-89418690 None:intergenic 15.0%
!! AAAATGTTAAAATAAAAGAG+AGG + chr3_1:89418672-89418691 None:intergenic 15.0%
!! AAATAGTTGTAAATGTTAAT+TGG + chr3_1:89418816-89418835 None:intergenic 15.0%
!! GAAATTGAAACATATAATAT+AGG + chr3_1:89419110-89419129 None:intergenic 15.0%
!! TTTATCTATCAAAATGAAAA+AGG - chr3_1:89419463-89419482 Msa0385730:intron 15.0%
!! TGTATATTAGTAGAAAAATA+CGG + chr3_1:89420191-89420210 None:intergenic 15.0%
!! ATATTACATATTATATGCAT+CGG + chr3_1:89421196-89421215 None:intergenic 15.0%
!! AATTTAAAAAGTTAAACTCA+CGG - chr3_1:89421268-89421287 Msa0385730:intron 15.0%
!! CATAAATATTATATGTTGTA+AGG + chr3_1:89423889-89423908 None:intergenic 15.0%
!!! TTAAACAATCCTTATTTATT+TGG - chr3_1:89424435-89424454 Msa0385730:intron 15.0%
!!! ATGATTTTCAATTTTCTTAA+AGG - chr3_1:89424979-89424998 Msa0385730:intron 15.0%
!!! ACATATATAGTATTCTTTTT+CGG + chr3_1:89425417-89425436 None:intergenic 15.0%
!! GATAATCTAATTCATATCTT+TGG - chr3_1:89419715-89419734 Msa0385730:intron 20.0%
!!! AAAATTGCACATTTTCAAAT+GGG + chr3_1:89420151-89420170 None:intergenic 20.0%
!! TTAAATCCACATTTCTTAAA+CGG + chr3_1:89420572-89420591 None:intergenic 20.0%
!! ATGAAATAGCTATAAAAAGA+AGG + chr3_1:89420905-89420924 None:intergenic 20.0%
!! TATTCATTCACTAAACAATA+TGG - chr3_1:89420932-89420951 Msa0385730:CDS 20.0%
!! ATTTAAAAAGTTAAACTCAC+GGG - chr3_1:89421269-89421288 Msa0385730:intron 20.0%
!! CTTAAATTCGTATAAAGAAA+TGG + chr3_1:89421304-89421323 None:intergenic 20.0%
!! CTTTATACGAATTTAAGAAA+TGG - chr3_1:89421307-89421326 Msa0385730:intron 20.0%
!! TTAAAAATGAAAGAAAGATG+TGG + chr3_1:89421489-89421508 None:intergenic 20.0%
!! TTAAGTATCTTAAAACTTGT+AGG + chr3_1:89422136-89422155 None:intergenic 20.0%
!! CTATTGTAAAACAAAAAAAC+CGG - chr3_1:89422280-89422299 Msa0385730:intron 20.0%
!! TATTGTAAAACAAAAAAACC+GGG - chr3_1:89422281-89422300 Msa0385730:intron 20.0%
!!! GCAAGAAGTTTTTTTTTTTT+TGG + chr3_1:89422586-89422605 None:intergenic 20.0%
!! TCAAATTTGTGTATTTAAAC+CGG - chr3_1:89422976-89422995 Msa0385730:intron 20.0%
!!! TTAGAATGTATTTTTTCATC+CGG + chr3_1:89422998-89423017 None:intergenic 20.0%
!! AGGAATTTATTAACATTATG+TGG - chr3_1:89423064-89423083 Msa0385730:intron 20.0%
!! TAGTCATTTATTTAAAGAGT+AGG + chr3_1:89423864-89423883 None:intergenic 20.0%
!! TTACAAATGCCAAATAAATA+AGG + chr3_1:89424447-89424466 None:intergenic 20.0%
!! AATTATTTCAATGTGTAGTA+TGG - chr3_1:89424623-89424642 Msa0385730:intron 20.0%
!! AGTTAGAAACAACAAAAATT+GGG + chr3_1:89424949-89424968 None:intergenic 20.0%
!! AAGATTCTAGATAATACAAA+GGG + chr3_1:89425441-89425460 None:intergenic 20.0%
!! TAAGATTCTAGATAATACAA+AGG + chr3_1:89425442-89425461 None:intergenic 20.0%
!! ACCAGTATTATTATAAAGTA+TGG - chr3_1:89425461-89425480 Msa0385730:five_prime_UTR 20.0%
!! ACCATACTTTATAATAATAC+TGG + chr3_1:89425465-89425484 None:intergenic 20.0%
!! TTCATTTGATGTATTGAATA+TGG - chr3_1:89425532-89425551 Msa0385730:five_prime_UTR 20.0%
! ATCCTTATAAATTCTTCAAC+TGG - chr3_1:89418975-89418994 Msa0385730:three_prime_UTR 25.0%
! TTCCAGTTGAAGAATTTATA+AGG + chr3_1:89418980-89418999 None:intergenic 25.0%
! ACACTAATCACATGATTATT+TGG + chr3_1:89419398-89419417 None:intergenic 25.0%
! CATATAACAAACATTCAAAG+TGG + chr3_1:89419496-89419515 None:intergenic 25.0%
! TTATGGTACTTAATGGAATT+AGG - chr3_1:89419669-89419688 Msa0385730:intron 25.0%
! TAGGTATTAATGTTACTAGT+TGG - chr3_1:89419688-89419707 Msa0385730:intron 25.0%
! AGGTATTAATGTTACTAGTT+GGG - chr3_1:89419689-89419708 Msa0385730:intron 25.0%
! TTTACTCTCTTCAATTCAAT+CGG + chr3_1:89419810-89419829 None:intergenic 25.0%
! AGTAAAAGGTTAATTGATGA+TGG + chr3_1:89419926-89419945 None:intergenic 25.0%
!! TAACCTTTTACTATTTTCGT+TGG - chr3_1:89419934-89419953 Msa0385730:intron 25.0%
!! CAAAATTGCACATTTTCAAA+TGG + chr3_1:89420152-89420171 None:intergenic 25.0%
! TAAACAGTTATGATAAGTGA+GGG - chr3_1:89420385-89420404 Msa0385730:intron 25.0%
! ACTGTATTACATGAATTTAG+TGG - chr3_1:89420484-89420503 Msa0385730:intron 25.0%
! ATTAATTGTATCATACCGTA+TGG + chr3_1:89420875-89420894 None:intergenic 25.0%
! ACATTTAAATGTGAAGAAGT+GGG - chr3_1:89421152-89421171 Msa0385730:CDS 25.0%
! TATCAGTTGAGTTAAACTTA+TGG - chr3_1:89421219-89421238 Msa0385730:intron 25.0%
!! CTTATGTTTGAAACAATCTA+CGG + chr3_1:89421369-89421388 None:intergenic 25.0%
! GATTGTTTCAAACATAAGTA+AGG - chr3_1:89421371-89421390 Msa0385730:intron 25.0%
! TTTCAAACATAAGTAAGGAA+TGG - chr3_1:89421376-89421395 Msa0385730:intron 25.0%
! ACCATTAGTAAGAATATTTG+GGG + chr3_1:89421687-89421706 None:intergenic 25.0%
! GACCATTAGTAAGAATATTT+GGG + chr3_1:89421688-89421707 None:intergenic 25.0%
! TGACCATTAGTAAGAATATT+TGG + chr3_1:89421689-89421708 None:intergenic 25.0%
! ACTAATGGTCAAAATTTGAT+TGG - chr3_1:89421698-89421717 Msa0385730:intron 25.0%
! AATTAAATACGTAGTCAGAT+CGG + chr3_1:89421819-89421838 None:intergenic 25.0%
! AATACTAGTACTAGTATAGT+TGG + chr3_1:89421991-89422010 None:intergenic 25.0%
!! AGGAATTTACAAAAGTTGAT+AGG + chr3_1:89422608-89422627 None:intergenic 25.0%
!! TATCATTTTGTTCGATATAG+AGG + chr3_1:89422830-89422849 None:intergenic 25.0%
!! ATCAATTACTTGAACTTTTG+TGG - chr3_1:89422867-89422886 Msa0385730:intron 25.0%
!!! GTTTTGAATTCGAAAGTTAA+GGG + chr3_1:89423345-89423364 None:intergenic 25.0%
! GTTTCTATATTTAACCTTTC+CGG - chr3_1:89424899-89424918 Msa0385730:intron 25.0%
! GTTAGAAACAACAAAAATTG+GGG + chr3_1:89424948-89424967 None:intergenic 25.0%
! CAGTTAGAAACAACAAAAAT+TGG + chr3_1:89424950-89424969 None:intergenic 25.0%
! AAACGCGTAAATAAAATTGT+TGG + chr3_1:89425099-89425118 None:intergenic 25.0%
! TATTATAAAGTATGGTGACA+AGG - chr3_1:89425469-89425488 Msa0385730:five_prime_UTR 25.0%
AAAATTGAAGGGGATTCATT+TGG + chr3_1:89418648-89418667 None:intergenic 30.0%
AAAAGAGAGGGAAAATTGAA+GGG + chr3_1:89418659-89418678 None:intergenic 30.0%
TAAAAGAGAGGGAAAATTGA+AGG + chr3_1:89418660-89418679 None:intergenic 30.0%
!! AAGAGACTTTTAAAAGAGGT+GGG + chr3_1:89418776-89418795 None:intergenic 30.0%
!! AAAGAGACTTTTAAAAGAGG+TGG + chr3_1:89418777-89418796 None:intergenic 30.0%
!! GAGAAAGAGACTTTTAAAAG+AGG + chr3_1:89418780-89418799 None:intergenic 30.0%
!!! AGTTTTGTTAGTTAAGTGTG+TGG - chr3_1:89418866-89418885 Msa0385730:three_prime_UTR 30.0%
!! GTTTTGTTAGTTAAGTGTGT+GGG - chr3_1:89418867-89418886 Msa0385730:three_prime_UTR 30.0%
! TTCAACTGGAATGTTACTTA+CGG - chr3_1:89418989-89419008 Msa0385730:three_prime_UTR 30.0%
TTACAGGGTATATTGATCAA+TGG - chr3_1:89419163-89419182 Msa0385730:CDS 30.0%
TACAGGGTATATTGATCAAT+GGG - chr3_1:89419164-89419183 Msa0385730:CDS 30.0%
TTTGTAACAGAATGAATGTC+TGG + chr3_1:89419202-89419221 None:intergenic 30.0%
!! TGTTGAAGACATTGATAATG+AGG + chr3_1:89419231-89419250 None:intergenic 30.0%
!! ATTAGTGTTGACACACTTAA+GGG - chr3_1:89419410-89419429 Msa0385730:intron 30.0%
ATATGACTCTAGCTAAATAG+TGG - chr3_1:89419511-89419530 Msa0385730:intron 30.0%
CACATGATTATGGTACTTAA+TGG - chr3_1:89419662-89419681 Msa0385730:intron 30.0%
TATTAATGTTACTAGTTGGG+AGG - chr3_1:89419692-89419711 Msa0385730:intron 30.0%
ATTAATGTTACTAGTTGGGA+GGG - chr3_1:89419693-89419712 Msa0385730:intron 30.0%
TAACAAGAAAGCAACCATTA+TGG - chr3_1:89419740-89419759 Msa0385730:intron 30.0%
AACACTTACGCTTTACATTA+TGG - chr3_1:89419888-89419907 Msa0385730:intron 30.0%
!! ATTGATGATGGATTATGGAT+GGG + chr3_1:89419914-89419933 None:intergenic 30.0%
!! AATTGATGATGGATTATGGA+TGG + chr3_1:89419915-89419934 None:intergenic 30.0%
!! GGTTAATTGATGATGGATTA+TGG + chr3_1:89419919-89419938 None:intergenic 30.0%
AAATACGGTCAAAGTAAGTT+AGG + chr3_1:89420176-89420195 None:intergenic 30.0%
TCAACTGTGTCAAGTATTAT+AGG - chr3_1:89420349-89420368 Msa0385730:intron 30.0%
GTAAACAGTTATGATAAGTG+AGG - chr3_1:89420384-89420403 Msa0385730:intron 30.0%
ATTTAATTGAATGAAACCGC+AGG - chr3_1:89420586-89420605 Msa0385730:intron 30.0%
CACTTATATACTTCAAGTGA+AGG - chr3_1:89420689-89420708 Msa0385730:CDS 30.0%
CACATTTAAATGTGAAGAAG+TGG - chr3_1:89421151-89421170 Msa0385730:CDS 30.0%
AAATGAAAGAAAGATGTGGT+GGG + chr3_1:89421485-89421504 None:intergenic 30.0%
AAAATGAAAGAAAGATGTGG+TGG + chr3_1:89421486-89421505 None:intergenic 30.0%
!! GAAAAAAGAGTACTAGAAAC+TGG - chr3_1:89421625-89421644 Msa0385730:intron 30.0%
CCATTAGTAAGAATATTTGG+GGG + chr3_1:89421686-89421705 None:intergenic 30.0%
AATGGTCAAAATTTGATTGG+CGG - chr3_1:89421701-89421720 Msa0385730:intron 30.0%
GAACTTTCAATGTAATACAG+CGG - chr3_1:89421893-89421912 Msa0385730:intron 30.0%
AACTTTCAATGTAATACAGC+GGG - chr3_1:89421894-89421913 Msa0385730:intron 30.0%
! AGTATTGAATCTGTAACGTT+TGG - chr3_1:89422005-89422024 Msa0385730:intron 30.0%
TTTAAACGAGACAGTTTCTA+TGG - chr3_1:89422454-89422473 Msa0385730:intron 30.0%
ACGTTGAATGATAATCCATT+AGG + chr3_1:89423173-89423192 None:intergenic 30.0%
TTATCATTCAACGTTGAACA+AGG - chr3_1:89423179-89423198 Msa0385730:intron 30.0%
!!! GGTTTTGAATTCGAAAGTTA+AGG + chr3_1:89423346-89423365 None:intergenic 30.0%
TAAAGAGTAGGAATCGAATT+CGG + chr3_1:89423852-89423871 None:intergenic 30.0%
AAGCTATGATCCATAATTTC+AGG - chr3_1:89423956-89423975 Msa0385730:intron 30.0%
! TAAGGTTAGTCCTGAAATTA+TGG + chr3_1:89423969-89423988 None:intergenic 30.0%
CTAATGAGCATTAAAGTGAA+AGG + chr3_1:89424381-89424400 None:intergenic 30.0%
TTCAATTGATATTGTGTCTC+TGG - chr3_1:89424570-89424589 Msa0385730:intron 30.0%
ATTTCAATGTGTAGTATGGA+TGG - chr3_1:89424627-89424646 Msa0385730:intron 30.0%
TAAACACTGCTACTATGTAT+AGG + chr3_1:89424848-89424867 None:intergenic 30.0%
ACATAGTAGCAGTGTTTAAT+CGG - chr3_1:89424850-89424869 Msa0385730:intron 30.0%
! TAAAGGTATATCCCTATTCA+TGG - chr3_1:89424996-89425015 Msa0385730:intron 30.0%
!!! TATAGTATTCTTTTTCGGCT+GGG + chr3_1:89425412-89425431 None:intergenic 30.0%
!!! ATATAGTATTCTTTTTCGGC+TGG + chr3_1:89425413-89425432 None:intergenic 30.0%
AAAGAGAGGGAAAATTGAAG+GGG + chr3_1:89418658-89418677 None:intergenic 35.0%
!! AGAGACTTTTAAAAGAGGTG+GGG + chr3_1:89418775-89418794 None:intergenic 35.0%
TTGTACCATGAGATGAGAAA+GGG + chr3_1:89419265-89419284 None:intergenic 35.0%
!! GATTAGTGTTGACACACTTA+AGG - chr3_1:89419409-89419428 Msa0385730:intron 35.0%
ATGTTTGTTTGATGCTGATG+TGG - chr3_1:89419434-89419453 Msa0385730:intron 35.0%
AAAAACAAGTGAACCAGATC+TGG + chr3_1:89419591-89419610 None:intergenic 35.0%
!! GTGCTTTTGCTCTTTTAGAA+AGG + chr3_1:89419645-89419664 None:intergenic 35.0%
! AGAGCAAAAGCACATGATTA+TGG - chr3_1:89419652-89419671 Msa0385730:CDS 35.0%
CAACCATTATGGCATATTGT+CGG - chr3_1:89419751-89419770 Msa0385730:intron 35.0%
ATTCCGACAATATGCCATAA+TGG + chr3_1:89419757-89419776 None:intergenic 35.0%
TTCAATTCAATCGGTACCTT+AGG + chr3_1:89419801-89419820 None:intergenic 35.0%
GTTGGTCGTTATGTAATGTA+AGG - chr3_1:89419852-89419871 Msa0385730:intron 35.0%
CAGCCAACGAAAATAGTAAA+AGG + chr3_1:89419940-89419959 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG + chr3_1:89420138-89420157 None:intergenic 35.0%
! ATGCATTGACATGCGTAATA+AGG - chr3_1:89420326-89420345 Msa0385730:intron 35.0%
CTGTGTCAAGTATTATAGGA+AGG - chr3_1:89420353-89420372 Msa0385730:intron 35.0%
TGTCAAGTATTATAGGAAGG+AGG - chr3_1:89420356-89420375 Msa0385730:intron 35.0%
GTCAAGTATTATAGGAAGGA+GGG - chr3_1:89420357-89420376 Msa0385730:intron 35.0%
CATATCTACAATTGCCCTTT+GGG + chr3_1:89420529-89420548 None:intergenic 35.0%
ACTGAACCGTTTAAGAAATG+TGG - chr3_1:89420563-89420582 Msa0385730:intron 35.0%
CTTCAAGTGAAGGATCAAAT+TGG - chr3_1:89420699-89420718 Msa0385730:CDS 35.0%
ACTTGTACCAATCACCAATA+AGG + chr3_1:89420848-89420867 None:intergenic 35.0%
ATTGTATCATACCGTATGGT+TGG + chr3_1:89420871-89420890 None:intergenic 35.0%
! AAGAACTACTCGACTTTTTG+TGG - chr3_1:89421429-89421448 Msa0385730:intron 35.0%
ATGAACTACGCGTTCAATAT+TGG - chr3_1:89421539-89421558 Msa0385730:intron 35.0%
CCCCCAAATATTCTTACTAA+TGG - chr3_1:89421683-89421702 Msa0385730:intron 35.0%
ACTTTCAATGTAATACAGCG+GGG - chr3_1:89421895-89421914 Msa0385730:intron 35.0%
!! AACTTTAAAACACATGCACC+CGG + chr3_1:89422302-89422321 None:intergenic 35.0%
AGACAGTTTCTATGGTTATC+CGG - chr3_1:89422462-89422481 Msa0385730:intron 35.0%
AAGCATCACATGAAAACTCA+CGG + chr3_1:89422501-89422520 None:intergenic 35.0%
TCCTTACAGATTACAGAACT+GGG + chr3_1:89423048-89423067 None:intergenic 35.0%
TTCCTTACAGATTACAGAAC+TGG + chr3_1:89423049-89423068 None:intergenic 35.0%
ATTGAAAGCCCATCTTGATA+AGG - chr3_1:89423100-89423119 Msa0385730:intron 35.0%
TTGAAAGCCCATCTTGATAA+GGG - chr3_1:89423101-89423120 Msa0385730:intron 35.0%
CTTCTTTCCCTTATCAAGAT+GGG + chr3_1:89423111-89423130 None:intergenic 35.0%
TATCACCATTTGTACACAAC+AGG - chr3_1:89423275-89423294 Msa0385730:intron 35.0%
TCTTTCCTGTTGTGTACAAA+TGG + chr3_1:89423283-89423302 None:intergenic 35.0%
CAGGAAAGACTTATAGACTT+AGG - chr3_1:89423294-89423313 Msa0385730:intron 35.0%
TAGACTTAGGATATCAAACG+TGG - chr3_1:89423307-89423326 Msa0385730:intron 35.0%
AGACTTAGGATATCAAACGT+GGG - chr3_1:89423308-89423327 Msa0385730:intron 35.0%
TCAAAACCACAAACTGAAGT+TGG - chr3_1:89423358-89423377 Msa0385730:intron 35.0%
AATCTTAGAGGAGAATCTTG+TGG + chr3_1:89423507-89423526 None:intergenic 35.0%
AAGTGAAATACCTGATTGAG+CGG + chr3_1:89423634-89423653 None:intergenic 35.0%
TTGTGTTTATGAGACCGTAA+TGG + chr3_1:89424029-89424048 None:intergenic 35.0%
CACAACAAAGACAATCATTC+TGG - chr3_1:89424044-89424063 Msa0385730:intron 35.0%
GTTAATGGCAAGCAAAGATA+TGG - chr3_1:89424084-89424103 Msa0385730:intron 35.0%
GCTGATTACTTCAAAATCTC+CGG - chr3_1:89424153-89424172 Msa0385730:intron 35.0%
! GAACAATGTTCTCGTTGTTT+TGG + chr3_1:89424284-89424303 None:intergenic 35.0%
!! GCTACTCTTTCTTTGTTGTT+GGG - chr3_1:89424322-89424341 Msa0385730:intron 35.0%
GAGACACAATATCAGTAACA+TGG + chr3_1:89424513-89424532 None:intergenic 35.0%
TGTTACTGATATTGTGTCTC+TGG - chr3_1:89424513-89424532 Msa0385730:intron 35.0%
TAATATGATTCTCACCTGAG+TGG + chr3_1:89424715-89424734 None:intergenic 35.0%
GTAACTAACCAACTAGTAAC+TGG + chr3_1:89424782-89424801 None:intergenic 35.0%
TCACATAACAGAAAGAAAGC+CGG + chr3_1:89424921-89424940 None:intergenic 35.0%
TAAATAGCCGTCCATGAATA+GGG + chr3_1:89425010-89425029 None:intergenic 35.0%
ATAAATAGCCGTCCATGAAT+AGG + chr3_1:89425011-89425030 None:intergenic 35.0%
TAAACCTTTGCTAGCTCAAA+GGG + chr3_1:89425209-89425228 None:intergenic 35.0%
TTAAACCTTTGCTAGCTCAA+AGG + chr3_1:89425210-89425229 None:intergenic 35.0%
AGAAAAACTTGGTACCAAAC+AGG + chr3_1:89425652-89425671 None:intergenic 35.0%
TTGAAGGGGATTCATTTGGA+AGG + chr3_1:89418644-89418663 None:intergenic 40.0%
!! GAGACTTTTAAAAGAGGTGG+GGG + chr3_1:89418774-89418793 None:intergenic 40.0%
ACTCTCAATTTAGCTGCTGT+TGG - chr3_1:89418899-89418918 Msa0385730:three_prime_UTR 40.0%
AGTAGCAACACATAGAAGCA+AGG + chr3_1:89418927-89418946 None:intergenic 40.0%
TTGATCAATGGGCAATTTCC+TGG - chr3_1:89419175-89419194 Msa0385730:CDS 40.0%
ATGAACCCTTTCTCATCTCA+TGG - chr3_1:89419257-89419276 Msa0385730:CDS 40.0%
CTTGTACCATGAGATGAGAA+AGG + chr3_1:89419266-89419285 None:intergenic 40.0%
TGTTTGATGCTGATGTGGAT+TGG - chr3_1:89419439-89419458 Msa0385730:intron 40.0%
ACACATTTGATCCAGCACAT+GGG + chr3_1:89419551-89419570 None:intergenic 40.0%
AAATGTGTGGACACTAGACA+CGG - chr3_1:89419563-89419582 Msa0385730:intron 40.0%
GGCATATTGTCGGAATTATG+TGG - chr3_1:89419761-89419780 Msa0385730:intron 40.0%
GGTAGAAGAAACTACTCCTA+AGG - chr3_1:89419782-89419801 Msa0385730:intron 40.0%
CCAACTACAACAACTACTTC+TGG + chr3_1:89419837-89419856 None:intergenic 40.0%
CCAGAAGTAGTTGTTGTAGT+TGG - chr3_1:89419834-89419853 Msa0385730:intron 40.0%
GAGTAGGTGGTAAGCTATAA+TGG + chr3_1:89419978-89419997 None:intergenic 40.0%
! TGATTTTGGACAAACCGAGA+TGG + chr3_1:89420000-89420019 None:intergenic 40.0%
! AAAAGTGGCGCATGTGATTT+TGG + chr3_1:89420014-89420033 None:intergenic 40.0%
TCAAATGGGTCATCTATTGC+GGG + chr3_1:89420137-89420156 None:intergenic 40.0%
!!! TTTTTTGTTCCTGAGCCCAA+AGG - chr3_1:89420511-89420530 Msa0385730:intron 40.0%
! TTTTTGTTCCTGAGCCCAAA+GGG - chr3_1:89420512-89420531 Msa0385730:intron 40.0%
CCATATCTACAATTGCCCTT+TGG + chr3_1:89420530-89420549 None:intergenic 40.0%
CCAAAGGGCAATTGTAGATA+TGG - chr3_1:89420527-89420546 Msa0385730:intron 40.0%
ATTGAATGAAACCGCAGGAA+TGG - chr3_1:89420591-89420610 Msa0385730:intron 40.0%
TTGAATGAAACCGCAGGAAT+GGG - chr3_1:89420592-89420611 Msa0385730:intron 40.0%
AGAAGGAACTCATTCGAAGA+TGG - chr3_1:89420624-89420643 Msa0385730:intron 40.0%
CTCATTCGAAGATGGTGTTT+CGG - chr3_1:89420632-89420651 Msa0385730:intron 40.0%
TCATTCGAAGATGGTGTTTC+GGG - chr3_1:89420633-89420652 Msa0385730:intron 40.0%
ATATAAGTGAAGTTCCTCCC+TGG + chr3_1:89420678-89420697 None:intergenic 40.0%
!! GCTTTCTGAAATGCTAGAGA+TGG + chr3_1:89420741-89420760 None:intergenic 40.0%
GGAGATTACACTGTCCTTAT+TGG - chr3_1:89420831-89420850 Msa0385730:CDS 40.0%
! ACACTGTCCTTATTGGTGAT+TGG - chr3_1:89420838-89420857 Msa0385730:CDS 40.0%
TTGGTACAAGTCCAACCATA+CGG - chr3_1:89420857-89420876 Msa0385730:CDS 40.0%
!! AGTACTAGAAACTGGTTTGC+TGG - chr3_1:89421633-89421652 Msa0385730:intron 40.0%
TTTGCTGGCAAATTACGAAG+TGG - chr3_1:89421648-89421667 Msa0385730:intron 40.0%
!!! CATTTTGAGTTGTGTGCCAA+GGG - chr3_1:89421775-89421794 Msa0385730:intron 40.0%
GACAGTTTCTATGGTTATCC+GGG - chr3_1:89422463-89422482 Msa0385730:intron 40.0%
TCACGGACAAAATTTGAACC+CGG + chr3_1:89422484-89422503 None:intergenic 40.0%
TCCCAGTTCTGTAATCTGTA+AGG - chr3_1:89423044-89423063 Msa0385730:intron 40.0%
GCTTCTTTCCCTTATCAAGA+TGG + chr3_1:89423112-89423131 None:intergenic 40.0%
AAGAAGCTTCCTATACCTGA+TGG - chr3_1:89423125-89423144 Msa0385730:intron 40.0%
ATTAGGACTCCATCAGGTAT+AGG + chr3_1:89423137-89423156 None:intergenic 40.0%
CTTCTACCAACTTCAGTTTG+TGG + chr3_1:89423367-89423386 None:intergenic 40.0%
!! CAAACTGAAGTTGGTAGAAG+TGG - chr3_1:89423367-89423386 Msa0385730:intron 40.0%
TCCTCACTTGATGTTCATGT+GGG - chr3_1:89423419-89423438 Msa0385730:intron 40.0%
ACAATGTAGTAGTCCTGAGA+AGG + chr3_1:89423479-89423498 None:intergenic 40.0%
TTCTCAGGACTACTACATTG+TGG - chr3_1:89423478-89423497 Msa0385730:CDS 40.0%
!! GACCTACAATCCAAGTTGAT+TGG - chr3_1:89423594-89423613 Msa0385730:CDS 40.0%
GACCAATCAACTTGGATTGT+AGG + chr3_1:89423599-89423618 None:intergenic 40.0%
GGTTCAAAGACCAATCAACT+TGG + chr3_1:89423607-89423626 None:intergenic 40.0%
AGTGAAATACCTGATTGAGC+GGG + chr3_1:89423633-89423652 None:intergenic 40.0%
GTTTATGAGACCGTAATGGT+AGG + chr3_1:89424025-89424044 None:intergenic 40.0%
AAGTAATCAGCGAGCTTAAG+AGG + chr3_1:89424144-89424163 None:intergenic 40.0%
TCACAGATGTGTCAAGGTAA+AGG + chr3_1:89424224-89424243 None:intergenic 40.0%
GTTCAGAGCTATCATCTTGA+TGG - chr3_1:89424300-89424319 Msa0385730:intron 40.0%
! GGCTACTCTTTCTTTGTTGT+TGG - chr3_1:89424321-89424340 Msa0385730:intron 40.0%
TCAATGTGTAGTATGGATGG+AGG - chr3_1:89424630-89424649 Msa0385730:intron 40.0%
TGGACAACTTCTAGCAGAAA+CGG - chr3_1:89424657-89424676 Msa0385730:intron 40.0%
TATGTATAGGACAGCTAGGT+AGG + chr3_1:89424835-89424854 None:intergenic 40.0%
CTACTATGTATAGGACAGCT+AGG + chr3_1:89424839-89424858 None:intergenic 40.0%
TAACAGAAAGAAAGCCGGAA+AGG + chr3_1:89424916-89424935 None:intergenic 40.0%
GGTATATCCCTATTCATGGA+CGG - chr3_1:89425000-89425019 Msa0385730:intron 40.0%
TATGTTGCACTTGACAACGT+TGG - chr3_1:89425028-89425047 Msa0385730:intron 40.0%
!! AGACGTGCATTCTTTGGAAT+AGG + chr3_1:89425154-89425173 None:intergenic 40.0%
AAACCTTTGCTAGCTCAAAG+GGG + chr3_1:89425208-89425227 None:intergenic 40.0%
! ACATATCCTTTTCACTTCCG+CGG - chr3_1:89425584-89425603 Msa0385730:five_prime_UTR 40.0%
TTGAAGCTTAAGAGCCTGTT+TGG - chr3_1:89425635-89425654 Msa0385730:five_prime_UTR 40.0%
CAGAAATGATTAGGGAGGTG+CGG + chr3_1:89418745-89418764 None:intergenic 45.0%
GGAGGGGTCAGAAATGATTA+GGG + chr3_1:89418753-89418772 None:intergenic 45.0%
!! TTTTAAAAGAGGTGGGGGAG+GGG + chr3_1:89418769-89418788 None:intergenic 45.0%
!! CTTTTAAAAGAGGTGGGGGA+GGG + chr3_1:89418770-89418789 None:intergenic 45.0%
!! ACTTTTAAAAGAGGTGGGGG+AGG + chr3_1:89418771-89418790 None:intergenic 45.0%
AAAACTCTTGCCTCTCTACG+CGG + chr3_1:89418852-89418871 None:intergenic 45.0%
TACGGTGACATTTACCCACT+TGG - chr3_1:89419007-89419026 Msa0385730:three_prime_UTR 45.0%
ACAGAATGAATGTCTGGACC+AGG + chr3_1:89419196-89419215 None:intergenic 45.0%
CACACATTTGATCCAGCACA+TGG + chr3_1:89419552-89419571 None:intergenic 45.0%
CATGTGCTGGATCAAATGTG+TGG - chr3_1:89419550-89419569 Msa0385730:intron 45.0%
CTAGCATTTCAGAAAGCAGC+TGG - chr3_1:89420744-89420763 Msa0385730:CDS 45.0%
! GAGGCATTAGGATACTCAGT+AGG - chr3_1:89420775-89420794 Msa0385730:CDS 45.0%
GGGAAAGGAACTGGAATTCT+AGG + chr3_1:89420801-89420820 None:intergenic 45.0%
! TGTAATCTCCAGCTGGTTCA+GGG + chr3_1:89420821-89420840 None:intergenic 45.0%
ATGTGAAGAAGTGGGATGTC+TGG - chr3_1:89421160-89421179 Msa0385730:CDS 45.0%
TGTGAAGAAGTGGGATGTCT+GGG - chr3_1:89421161-89421180 Msa0385730:CDS 45.0%
! AAGAAAGATGTGGTGGGAGT+GGG + chr3_1:89421479-89421498 None:intergenic 45.0%
! AAAGAAAGATGTGGTGGGAG+TGG + chr3_1:89421480-89421499 None:intergenic 45.0%
CCTTGGCACACAACTCAAAA+TGG + chr3_1:89421777-89421796 None:intergenic 45.0%
!!! CCATTTTGAGTTGTGTGCCA+AGG - chr3_1:89421774-89421793 Msa0385730:intron 45.0%
TCAGATCGGATAGAAGAGGA+GGG + chr3_1:89421805-89421824 None:intergenic 45.0%
GTAGTCAGATCGGATAGAAG+AGG + chr3_1:89421809-89421828 None:intergenic 45.0%
CTCTTAAGCAAGTTGCCAAG+CGG - chr3_1:89421841-89421860 Msa0385730:intron 45.0%
TCTAATGAGTGATCACCGCT+TGG + chr3_1:89421859-89421878 None:intergenic 45.0%
TATACTCCCTCAGTGTCCAT+GGG + chr3_1:89422754-89422773 None:intergenic 45.0%
TTATACTCCCTCAGTGTCCA+TGG + chr3_1:89422755-89422774 None:intergenic 45.0%
! CCATTGATTAGGACTCCATC+AGG + chr3_1:89423143-89423162 None:intergenic 45.0%
CCTGATGGAGTCCTAATCAA+TGG - chr3_1:89423140-89423159 Msa0385730:intron 45.0%
! TAGGTCCACGACCATTGATT+AGG + chr3_1:89423154-89423173 None:intergenic 45.0%
ATCAATGGTCGTGGACCTAA+TGG - chr3_1:89423155-89423174 Msa0385730:intron 45.0%
!! CTGAAGTTGGTAGAAGTGGA+AGG - chr3_1:89423371-89423390 Msa0385730:intron 45.0%
! AACATCAAGTGAGGAGTACG+TGG + chr3_1:89423414-89423433 None:intergenic 45.0%
CTCCTCACTTGATGTTCATG+TGG - chr3_1:89423418-89423437 Msa0385730:intron 45.0%
TCCCACATGAACATCAAGTG+AGG + chr3_1:89423423-89423442 None:intergenic 45.0%
AACTGCTGATCAACCTTCTC+AGG - chr3_1:89423463-89423482 Msa0385730:CDS 45.0%
! AGTGGTGGTGAGAATCTTAG+AGG + chr3_1:89423519-89423538 None:intergenic 45.0%
TAAGATTCTCACCACCACTG+CGG - chr3_1:89423520-89423539 Msa0385730:CDS 45.0%
GATCGACTACTCCTTAACCA+CGG - chr3_1:89423769-89423788 Msa0385730:intron 45.0%
ATCGACTACTCCTTAACCAC+GGG - chr3_1:89423770-89423789 Msa0385730:intron 45.0%
AGGACTAACCTTACAGCAAG+TGG - chr3_1:89423976-89423995 Msa0385730:intron 45.0%
CGTAATGGTAGGATCCTTGT+GGG + chr3_1:89424014-89424033 None:intergenic 45.0%
CCACAAGGATCCTACCATTA+CGG - chr3_1:89424012-89424031 Msa0385730:intron 45.0%
CTTGCATCACAGATGTGTCA+AGG + chr3_1:89424230-89424249 None:intergenic 45.0%
GGACAACTTCTAGCAGAAAC+GGG - chr3_1:89424658-89424677 Msa0385730:intron 45.0%
GCAAACGACCAGTTACTAGT+TGG - chr3_1:89424771-89424790 Msa0385730:intron 45.0%
CACTTGACAACGTTGGAATG+TGG - chr3_1:89425035-89425054 Msa0385730:intron 45.0%
ACGTTGGAATGTGGAACTTG+AGG - chr3_1:89425044-89425063 Msa0385730:CDS 45.0%
! GAACTTGAGGACCGAGTTTT+GGG - chr3_1:89425057-89425076 Msa0385730:CDS 45.0%
ATACTGTCGTGCCCAAAACT+CGG + chr3_1:89425071-89425090 None:intergenic 45.0%
! TTTTGGGCACGACAGTATCT+TGG - chr3_1:89425073-89425092 Msa0385730:CDS 45.0%
AGGAAACTCGTCTCTGATTG+AGG + chr3_1:89425134-89425153 None:intergenic 45.0%
AACCTTTGCTAGCTCAAAGG+GGG + chr3_1:89425207-89425226 None:intergenic 45.0%
CATCCATTCCATGCTTGAGA+AGG - chr3_1:89425233-89425252 Msa0385730:intron 45.0%
ATGCCTTCTCAAGCATGGAA+TGG + chr3_1:89425239-89425258 None:intergenic 45.0%
CTAGAATGCCTTCTCAAGCA+TGG + chr3_1:89425244-89425263 None:intergenic 45.0%
TCTTTCAGACTCAAACGTGG+TGG + chr3_1:89425365-89425384 None:intergenic 45.0%
AGGTCTTTCAGACTCAAACG+TGG + chr3_1:89425368-89425387 None:intergenic 45.0%
GTGACAAGGATTGCAGAAGT+TGG - chr3_1:89425483-89425502 Msa0385730:five_prime_UTR 45.0%
GCTGTTACAAAAAGACACCG+CGG + chr3_1:89425604-89425623 None:intergenic 45.0%
!!! TTTTTTTATTTAATTTTTAC+AGG - chr3_1:89419147-89419166 Msa0385730:CDS 5.0%
!!! TTTTTTATTTAATTTTTACA+GGG - chr3_1:89419148-89419167 Msa0385730:CDS 5.0%
!! AAAAATTACAATAAAAAAAA+TGG - chr3_1:89421078-89421097 Msa0385730:intron 5.0%
!!! TAATTAATATTTTATTTTTC+TGG - chr3_1:89422071-89422090 Msa0385730:intron 5.0%
!! TAAATTAACTTATAAAAATA+TGG - chr3_1:89422153-89422172 Msa0385730:intron 5.0%
!! AAATTAACTTATAAAAATAT+GGG - chr3_1:89422154-89422173 Msa0385730:intron 5.0%
GGGGTCAGAAATGATTAGGG+AGG + chr3_1:89418750-89418769 None:intergenic 50.0%
GGGAGGGGTCAGAAATGATT+AGG + chr3_1:89418754-89418773 None:intergenic 50.0%
ACCCACTTGGAGTTCGTCAA+AGG - chr3_1:89419020-89419039 Msa0385730:three_prime_UTR 50.0%
CCCTTTGACGAACTCCAAGT+GGG + chr3_1:89419024-89419043 None:intergenic 50.0%
CCCACTTGGAGTTCGTCAAA+GGG - chr3_1:89419021-89419040 Msa0385730:three_prime_UTR 50.0%
ACCCTTTGACGAACTCCAAG+TGG + chr3_1:89419025-89419044 None:intergenic 50.0%
CACTAAAGTCTCCCATGTGC+TGG - chr3_1:89419537-89419556 Msa0385730:intron 50.0%
ACTAGACACGGATCCAGATC+TGG - chr3_1:89419575-89419594 Msa0385730:intron 50.0%
!! TTCGTTGGCTGTTAGCTTGC+TGG - chr3_1:89419949-89419968 Msa0385730:intron 50.0%
GCTTACCACCTACTCCATCT+CGG - chr3_1:89419983-89420002 Msa0385730:CDS 50.0%
ACAAACCGAGATGGAGTAGG+TGG + chr3_1:89419991-89420010 None:intergenic 50.0%
TGGACAAACCGAGATGGAGT+AGG + chr3_1:89419994-89420013 None:intergenic 50.0%
ATGGGTCATCTATTGCGGGA+CGG + chr3_1:89420133-89420152 None:intergenic 50.0%
TACAATTGCCCTTTGGGCTC+AGG + chr3_1:89420523-89420542 None:intergenic 50.0%
CGAATGAGTTCCTTCTCTGC+TGG + chr3_1:89420620-89420639 None:intergenic 50.0%
AAGTGAAGTTCCTCCCTGGT+GGG + chr3_1:89420674-89420693 None:intergenic 50.0%
TAAGTGAAGTTCCTCCCTGG+TGG + chr3_1:89420675-89420694 None:intergenic 50.0%
GCATTTCAGAAAGCAGCTGG+CGG - chr3_1:89420747-89420766 Msa0385730:CDS 50.0%
! GTGTAATCTCCAGCTGGTTC+AGG + chr3_1:89420822-89420841 None:intergenic 50.0%
AGGACAGTGTAATCTCCAGC+TGG + chr3_1:89420828-89420847 None:intergenic 50.0%
! AGAAAGATGTGGTGGGAGTG+GGG + chr3_1:89421478-89421497 None:intergenic 50.0%
AGAAGAGGAGGGTTATCCCT+TGG + chr3_1:89421794-89421813 None:intergenic 50.0%
GTCAGATCGGATAGAAGAGG+AGG + chr3_1:89421806-89421825 None:intergenic 50.0%
! CGCTTGGCAACTTGCTTAAG+AGG + chr3_1:89421843-89421862 None:intergenic 50.0%
ATACTCCCTCAGTGTCCATG+GGG + chr3_1:89422753-89422772 None:intergenic 50.0%
GGAGTCCTAATCAATGGTCG+TGG - chr3_1:89423146-89423165 Msa0385730:intron 50.0%
CTTCGCTATAGCAACTCTGC+AGG - chr3_1:89423545-89423564 Msa0385730:CDS 50.0%
TTGGATTGTAGGTCCACCAG+GGG + chr3_1:89423588-89423607 None:intergenic 50.0%
CTTGGATTGTAGGTCCACCA+GGG + chr3_1:89423589-89423608 None:intergenic 50.0%
ACTTGGATTGTAGGTCCACC+AGG + chr3_1:89423590-89423609 None:intergenic 50.0%
! AATACCTGATTGAGCGGGCT+TGG + chr3_1:89423628-89423647 None:intergenic 50.0%
TCGACTACTCCTTAACCACG+GGG - chr3_1:89423771-89423790 Msa0385730:intron 50.0%
ACCTTACAGCAAGTGGACCA+AGG - chr3_1:89423983-89424002 Msa0385730:intron 50.0%
TGGTAGGATCCTTGTGGGTT+AGG + chr3_1:89424009-89424028 None:intergenic 50.0%
CCGTAATGGTAGGATCCTTG+TGG + chr3_1:89424015-89424034 None:intergenic 50.0%
! ATCATTCTGGCTAGCTCTCC+TGG - chr3_1:89424057-89424076 Msa0385730:intron 50.0%
AGCTCTCCTGGTCAGGTTAA+TGG - chr3_1:89424069-89424088 Msa0385730:intron 50.0%
TGCTTGCCATTAACCTGACC+AGG + chr3_1:89424078-89424097 None:intergenic 50.0%
! ATCTCCGGTGTTTTTCGCGT+TGG - chr3_1:89424168-89424187 Msa0385730:intron 50.0%
GCTTCCAACGCGAAAAACAC+CGG + chr3_1:89424175-89424194 None:intergenic 50.0%
AGCATATCTGAGAGACCCAC+TGG - chr3_1:89424192-89424211 Msa0385730:intron 50.0%
ATATCTGAGAGACCCACTGG+TGG - chr3_1:89424195-89424214 Msa0385730:intron 50.0%
GTAGTATGGATGGAGGACAG+TGG - chr3_1:89424637-89424656 Msa0385730:intron 50.0%
! GGAACTTGAGGACCGAGTTT+TGG - chr3_1:89425056-89425075 Msa0385730:CDS 50.0%
CCACAGAGACGTGCATTCTT+TGG + chr3_1:89425160-89425179 None:intergenic 50.0%
CCAAAGAATGCACGTCTCTG+TGG - chr3_1:89425157-89425176 Msa0385730:intron 50.0%
AGAATGCACGTCTCTGTGGT+AGG - chr3_1:89425161-89425180 Msa0385730:intron 50.0%
GAATGCACGTCTCTGTGGTA+GGG - chr3_1:89425162-89425181 Msa0385730:intron 50.0%
GTGGTCGTTCTTGATACGAC+AGG + chr3_1:89425346-89425365 None:intergenic 50.0%
AAGAATGTGACCTCGAGCTG+AGG + chr3_1:89425388-89425407 None:intergenic 50.0%
AAGACACCGCGGAAGTGAAA+AGG + chr3_1:89425593-89425612 None:intergenic 50.0%
TGCGGTGCAAGAAGGGACTA+AGG + chr3_1:89418727-89418746 None:intergenic 55.0%
! GTAAGCATTGCCGCGTAGAG+AGG - chr3_1:89418839-89418858 Msa0385730:three_prime_UTR 55.0%
GTCATCTATTGCGGGACGGA+GGG + chr3_1:89420129-89420148 None:intergenic 55.0%
TCTGCTGGATCCCATTCCTG+CGG + chr3_1:89420605-89420624 None:intergenic 55.0%
GGAATGGGATCCAGCAGAGA+AGG - chr3_1:89420607-89420626 Msa0385730:intron 55.0%
AAGTTCCTCCCTGGTGGGAT+GGG + chr3_1:89420669-89420688 None:intergenic 55.0%
! CAGAAAGCAGCTGGCGGTTT+TGG - chr3_1:89420753-89420772 Msa0385730:CDS 55.0%
!! AAAGCAGCTGGCGGTTTTGG+AGG - chr3_1:89420756-89420775 Msa0385730:CDS 55.0%
!!! CTGGCGGTTTTGGAGGCATT+AGG - chr3_1:89420763-89420782 Msa0385730:CDS 55.0%
! GCTGGTTCAGGGAAAGGAAC+TGG + chr3_1:89420810-89420829 None:intergenic 55.0%
GTTCCTTTCCCTGAACCAGC+TGG - chr3_1:89420810-89420829 Msa0385730:CDS 55.0%
! TCTCCAGCTGGTTCAGGGAA+AGG + chr3_1:89420816-89420835 None:intergenic 55.0%
AACTCTGCAGGCGCAGTATC+AGG - chr3_1:89423557-89423576 Msa0385730:CDS 55.0%
TGGATTGTAGGTCCACCAGG+GGG + chr3_1:89423587-89423606 None:intergenic 55.0%
TGAACCAAGCCCGCTCAATC+AGG - chr3_1:89423621-89423640 Msa0385730:CDS 55.0%
CGACTACTCCTTAACCACGG+GGG - chr3_1:89423772-89423791 Msa0385730:intron 55.0%
!! GCCTTGGTCCACTTGCTGTA+AGG + chr3_1:89423987-89424006 None:intergenic 55.0%
!! GATCCTTGTGGGTTAGGCCT+TGG + chr3_1:89424003-89424022 None:intergenic 55.0%
! CGAGCTTAAGAGGCGTGTCT+GGG + chr3_1:89424134-89424153 None:intergenic 55.0%
AGGTAAAGGCCACCACCAGT+GGG + chr3_1:89424210-89424229 None:intergenic 55.0%
AAGGTAAAGGCCACCACCAG+TGG + chr3_1:89424211-89424230 None:intergenic 55.0%
GTCTCTGTGGTAGGGCAAGT+GGG - chr3_1:89425170-89425189 Msa0385730:intron 55.0%
TTTGCTAGCTCAAAGGGGGC+GGG + chr3_1:89425203-89425222 None:intergenic 55.0%
CTTTGCTAGCTCAAAGGGGG+CGG + chr3_1:89425204-89425223 None:intergenic 55.0%
GTCTGAAAGACCTCAGCTCG+AGG - chr3_1:89425375-89425394 Msa0385730:CDS 55.0%
! AGGGAGGTGCGGTGCAAGAA+GGG + chr3_1:89418734-89418753 None:intergenic 60.0%
! TAGGGAGGTGCGGTGCAAGA+AGG + chr3_1:89418735-89418754 None:intergenic 60.0%
GGTCATCTATTGCGGGACGG+AGG + chr3_1:89420130-89420149 None:intergenic 60.0%
ACAACATGCCCCATCCCACC+AGG - chr3_1:89420657-89420676 Msa0385730:intron 60.0%
CAACATGCCCCATCCCACCA+GGG - chr3_1:89420658-89420677 Msa0385730:intron 60.0%
AGTTCCTCCCTGGTGGGATG+GGG + chr3_1:89420668-89420687 None:intergenic 60.0%
GAAGTTCCTCCCTGGTGGGA+TGG + chr3_1:89420670-89420689 None:intergenic 60.0%
!! ATAGCGAAGCACCGCAGTGG+TGG + chr3_1:89423534-89423553 None:intergenic 60.0%
!! GCTATAGCGAAGCACCGCAG+TGG + chr3_1:89423537-89423556 None:intergenic 60.0%
TTGTAGGTCCACCAGGGGGT+GGG + chr3_1:89423583-89423602 None:intergenic 60.0%
ATTGTAGGTCCACCAGGGGG+TGG + chr3_1:89423584-89423603 None:intergenic 60.0%
GCACTAGACCCCCGTGGTTA+AGG + chr3_1:89423783-89423802 None:intergenic 60.0%
GGACCAAGGCCTAACCCACA+AGG - chr3_1:89423997-89424016 Msa0385730:intron 60.0%
! TCTGGCTAGCTCTCCTGGTC+AGG - chr3_1:89424062-89424081 Msa0385730:intron 60.0%
! GCGAGCTTAAGAGGCGTGTC+TGG + chr3_1:89424135-89424154 None:intergenic 60.0%
TCTGAGAGACCCACTGGTGG+TGG - chr3_1:89424198-89424217 Msa0385730:intron 60.0%
AGTAGCGCGTTGCACCACTC+AGG - chr3_1:89424698-89424717 Msa0385730:intron 60.0%
CGTCTCTGTGGTAGGGCAAG+TGG - chr3_1:89425169-89425188 Msa0385730:intron 60.0%
CGCCCCCTTTGAGCTAGCAA+AGG - chr3_1:89425202-89425221 Msa0385730:intron 60.0%
TGCCGCCCCATGGACACTGA+GGG - chr3_1:89422745-89422764 Msa0385730:intron 65.0%
CTCCCTCAGTGTCCATGGGG+CGG + chr3_1:89422750-89422769 None:intergenic 65.0%
CCACTTGCACTAGACCCCCG+TGG + chr3_1:89423789-89423808 None:intergenic 65.0%
CCACGGGGGTCTAGTGCAAG+TGG - chr3_1:89423786-89423805 Msa0385730:intron 65.0%
CATGCCCCATCCCACCAGGG+AGG - chr3_1:89420661-89420680 Msa0385730:intron 70.0%
CTACCTCTGCTGCCGCCCCA+TGG - chr3_1:89422735-89422754 Msa0385730:intron 70.0%
TGTCCATGGGGCGGCAGCAG+AGG + chr3_1:89422741-89422760 None:intergenic 70.0%
CTGCCGCCCCATGGACACTG+AGG - chr3_1:89422744-89422763 Msa0385730:intron 70.0%
GCAGTATCAGGCCCACCCCC+TGG - chr3_1:89423569-89423588 Msa0385730:CDS 70.0%
GTATCAGGCCCACCCCCTGG+TGG - chr3_1:89423572-89423591 Msa0385730:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 89418639 89425676 89418639 ID=Msa0385730;Name=Msa0385730
chr3_1 mRNA 89418639 89425676 89418639 ID=Msa0385730-mRNA-1;Parent=Msa0385730;Name=Msa0385730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=257|1|1|1|1|1|8|463|544
chr3_1 exon 89418639 89419314 89418639 ID=Msa0385730-mRNA-1:exon:24368;Parent=Msa0385730-mRNA-1
chr3_1 exon 89419596 89419674 89419596 ID=Msa0385730-mRNA-1:exon:24367;Parent=Msa0385730-mRNA-1
chr3_1 exon 89419972 89420337 89419972 ID=Msa0385730-mRNA-1:exon:24366;Parent=Msa0385730-mRNA-1
chr3_1 exon 89420673 89421018 89420673 ID=Msa0385730-mRNA-1:exon:24365;Parent=Msa0385730-mRNA-1
chr3_1 exon 89421115 89421217 89421115 ID=Msa0385730-mRNA-1:exon:24364;Parent=Msa0385730-mRNA-1
chr3_1 exon 89423437 89423707 89423437 ID=Msa0385730-mRNA-1:exon:24363;Parent=Msa0385730-mRNA-1
chr3_1 exon 89425037 89425146 89425037 ID=Msa0385730-mRNA-1:exon:24362;Parent=Msa0385730-mRNA-1
chr3_1 exon 89425273 89425676 89425273 ID=Msa0385730-mRNA-1:exon:24361;Parent=Msa0385730-mRNA-1
chr3_1 five_prime_UTR 89425420 89425676 89425420 ID=Msa0385730-mRNA-1:five_prime_utr;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89425273 89425419 89425273 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89425037 89425146 89425037 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89423437 89423707 89423437 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89421115 89421217 89421115 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89420673 89421018 89420673 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89419972 89420337 89419972 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89419596 89419674 89419596 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 CDS 89419102 89419314 89419102 ID=Msa0385730-mRNA-1:cds;Parent=Msa0385730-mRNA-1
chr3_1 three_prime_UTR 89418639 89419101 89418639 ID=Msa0385730-mRNA-1:three_prime_utr;Parent=Msa0385730-mRNA-1
Gene Sequence

>Msa0385730

ATGACTCTCAATTTAGCTGCTGTTGGAGCCTTGCTTCTATGTGTTGCTACTTCTTTGTTTCACATTACTTCAGCTGAAGATCCTTATAAATTCTTCAACTGGAATGTTACTTACGGTGACATTTACCCACTTGGAGTTCGTCAAAGGGGTATATTGATCAATGGGCAATTTCCTGGTCCAGACATTCATTCTGTTACAAACGACAACCTCATTATCAATGTCTTCAACAGTTTGAATGAACCCTTTCTCATCTCATGGAATGGGATCCAGCAGAGAAGGAACTCATTCGAAGATGGTGTTTCGGGAACAACATGCCCCATCCCACCAGGGAGGAACTTCACTTATATACTTCAAGTGAAGGATCAAATTGGAAGCTTTTACTACTTTCCATCTCTAGCATTTCAGAAAGCAGCTGGCGGTTTTGGAGGCATTAGGATACTCAGTAGGCCTAGAATTCCAGTTCCTTTCCCTGAACCAGCTGGAGATTACACTGTCCTTATTGGTGATTGGTACAAGTCCAACCATACGACATTGAAAGCCCATCTTGATAAGGGAAAGAAGCTTCCTATACCTGATGGAGTCCTAATCAATGGTCGTGGACCTAATGGATTATCATTCAACGTTGAACAAGGAAAGACTTATAGACTTAGGATATCAAACGTGGGATTGCAACATTCCCTTAACTTTCGAATTCAAAACCACAAACTGAAGTTGGTAGAAGTGGAAGGAACACACACACTTCAAACCACGTACTCCTCACTTGATGTTCATGTGGGACAATCTTACTCAGTGCTAGTAACTGCTGATCAACCTTCTCAGGACTACTACATTGTGGCTTCCACAAGATTCTCCTCTAAGATTCTCACCACCACTGCGGTGCTTCGCTATAGCAACTCTGCAGGCGCAGTATCAGGCCCACCCCCTGGTGGACCTACAATCCAAGTTGATTGGTCTTTGAACCAAGCCCGCTCAATCAGGACTAACCTTACAGCAAGTGGACCAAGGCCTAACCCACAAGGATCCTACCATTACGGTCTCATAAACACAACAAAGACAATCATTCTGGCTAGCTCTCCTGGTCAGGTTAATGGCAAGCAAAGATATGGAATAAACAGTGTGTCTTATGTTGTCCCAGACACGCCTCTTAAGCTCGCTGATTACTTCAAAATCTCCGGTGTTTTTCGCGTTGGAAGCATATCTGAGAGACCCACTGGTGGTGGCCTTTACCTTGACACATCTGTGATGCAAGCTGATTACAGATCTTTTGTTGAGATTGTCTTCCAAAACAACGAGAACATTGTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGTATGGATGGAGGACAGTGGACAACTTCTAGCAGAAACGGGTACAATCTTCGAGATGCAGTAGCGCGTTGCACCACTCAGGTATATCCCTATTCATGGACGGCTATTTATGTTGCACTTGACAACGTTGGAATGTGGAACTTGAGGACCGAGTTTTGGGCACGACAGTATCTTGGCCAACAATTTTATTTACGCGTTTACACAGCATCAACCTCAATCAGAGACGAGTTTCCTATTCCAAAGAATGCACGTCTCTGTGGTAGGGCAAGTGGGAGACATACCCGCCCCCTTTGA
Protein sequence

>Msa0385730

MTLNLAAVGALLLCVATSLFHITSAEDPYKFFNWNVTYGDIYPLGVRQRGILINGQFPGPDIHSVTNDNLIINVFNSLNEPFLISWNGIQQRRNSFEDGVSGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFQKAAGGFGGIRILSRPRIPVPFPEPAGDYTVLIGDWYKSNHTTLKAHLDKGKKLPIPDGVLINGRGPNGLSFNVEQGKTYRLRISNVGLQHSLNFRIQNHKLKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPSQDYYIVASTRFSSKILTTTAVLRYSNSAGAVSGPPPGGPTIQVDWSLNQARSIRTNLTASGPRPNPQGSYHYGLINTTKTIILASSPGQVNGKQRYGINSVSYVVPDTPLKLADYFKISGVFRVGSISERPTGGGLYLDTSVMQADYRSFVEIVFQNNENIVQSYHLDGYSFFVVGMDGGQWTTSSRNGYNLRDAVARCTTQVYPYSWTAIYVALDNVGMWNLRTEFWARQYLGQQFYLRVYTASTSIRDEFPIPKNARLCGRASGRHTRPL*