AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481960 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa0481960 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 4.16e-180 505
Msa0481960 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 6.60e-72 229
Msa0481960 MtrunA17_Chr6g0449461 35.913 323 190 8 48 360 9 324 1.00e-45 160
Msa0481960 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.84e-35 131
Msa0481960 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.05e-32 124
Msa0481960 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.32e-31 126
Msa0481960 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.76e-31 125
Msa0481960 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 8.21e-30 120
Msa0481960 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 4.50e-29 119
Msa0481960 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 3.03e-27 113
Msa0481960 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.39e-26 112
Msa0481960 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.46e-26 110
Msa0481960 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.72e-25 107
Msa0481960 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.08e-23 100
Msa0481960 MtrunA17_Chr2g0290151 29.464 224 123 5 124 317 147 365 3.74e-11 64.7
Msa0481960 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.43e-22 100
Msa0481960 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 4.23e-20 92.4
Msa0481960 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.62e-19 90.9
Msa0481960 MtrunA17_Chr5g0437411 28.977 176 121 3 124 298 406 578 1.74e-11 65.9
Msa0481960 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.25e-19 89.0
Msa0481960 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 6.77e-18 85.9
Msa0481960 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 2.86e-16 80.9
Msa0481960 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 6.05e-14 73.6
Msa0481960 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.82e-13 72.0
Msa0481960 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.15e-12 69.7
Msa0481960 MtrunA17_Chr7g0234671 27.407 270 180 9 58 318 188 450 1.26e-12 68.9
Msa0481960 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.63e-12 68.6
Msa0481960 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.79e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481960 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.26e-147 424
Msa0481960 AT4G12710.1 47.164 335 169 5 51 378 57 390 6.41e-80 251
Msa0481960 AT5G14510.1 36.760 321 188 8 48 360 9 322 1.71e-42 152
Msa0481960 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0481960 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0481960 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0481960 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0481960 AT2G23140.1 32.857 280 180 5 41 318 546 819 6.05e-35 137
Msa0481960 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.05e-33 127
Msa0481960 AT5G67340.1 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0481960 AT5G67340.2 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0481960 AT5G58680.1 34.586 266 164 7 58 319 80 339 3.37e-30 119
Msa0481960 AT3G54790.2 33.929 280 176 6 48 324 445 718 3.39e-30 123
Msa0481960 AT3G54790.3 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0481960 AT3G54790.1 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0481960 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.41e-27 114
Msa0481960 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.22e-26 110
Msa0481960 AT1G71020.1 33.451 284 182 6 40 320 342 621 2.86e-26 111
Msa0481960 AT4G31890.3 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0481960 AT4G31890.2 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0481960 AT4G31890.1 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0481960 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.09e-25 108
Msa0481960 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.00e-24 105
Msa0481960 AT1G67530.2 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0481960 AT1G67530.1 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0481960 AT1G67530.4 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0481960 AT4G16490.1 30.175 285 149 6 85 326 189 466 2.57e-23 101
Msa0481960 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0481960 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0481960 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.98e-21 95.9
Msa0481960 AT1G23030.1 27.402 281 160 5 81 320 333 610 1.61e-20 94.0
Msa0481960 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.15e-18 88.6
Msa0481960 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.47e-18 88.2
Msa0481960 AT5G42340.1 28.114 281 161 6 79 320 379 657 1.11e-16 82.4
Msa0481960 AT3G07360.5 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.3 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.9 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.6 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.2 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.8 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.10 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.7 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.4 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0481960 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.05e-14 75.9
Msa0481960 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.69e-14 75.5
Msa0481960 AT1G60190.1 28.808 302 200 11 30 319 366 664 9.66e-13 70.5
Msa0481960 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.65e-12 69.3
Msa0481960 AT4G21350.1 24.907 269 191 5 56 321 111 371 7.46e-11 63.5

Find 129 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAGGCTAAGATTATT+AGG 0.196913 3_3:+88383220 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 3_3:+88386458 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 3_3:+88386300 None:intergenic
TTGGATTTGTTTCGAGAATA+AGG 0.252961 3_3:+88383206 None:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 3_3:+88383331 None:intergenic
AGAGAGAGAGTGGGATTTGA+AGG 0.287224 3_3:+88386392 None:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 3_3:-88386174 Msa0481960:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 3_3:+88382647 None:intergenic
GACAAATACATAAAGTCATA+TGG 0.361269 3_3:+88386480 None:intergenic
ATCAACAAACCAATTATTAG+TGG 0.366264 3_3:-88383340 Msa0481960:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 3_3:+88383014 None:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 3_3:-88386309 Msa0481960:CDS
GAGCACGACGGACGGCTAAT+GGG 0.381866 3_3:+88386233 None:intergenic
AGAGCACGACGGACGGCTAA+TGG 0.382767 3_3:+88386232 None:intergenic
CTGGAATGACACCTTCTCTA+AGG 0.385946 3_3:+88382939 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.394977 3_3:-88382938 Msa0481960:CDS
AGAGAGTGGGATTTGAAGGT+AGG 0.398737 3_3:+88386396 None:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 3_3:+88382648 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 3_3:+88382861 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 3_3:+88382836 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 3_3:+88382830 None:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 3_3:+88386325 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 3_3:-88382970 Msa0481960:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 3_3:+88386334 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 3_3:+88382560 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 3_3:-88386089 Msa0481960:CDS
GAGAGTGGGATTTGAAGGTA+GGG 0.446446 3_3:+88386397 None:intergenic
GTCAGAAAATCTAAATCTAC+AGG 0.455369 3_3:-88383404 Msa0481960:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 3_3:+88382659 None:intergenic
ACAAATACATAAAGTCATAT+GGG 0.459871 3_3:+88386481 None:intergenic
CTGCATCAGCTTTCGCCTGT+GGG 0.462869 3_3:+88383272 None:intergenic
GAATAAGGCTAAGATTATTA+GGG 0.463501 3_3:+88383221 None:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 3_3:+88383187 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 3_3:-88386214 Msa0481960:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 3_3:-88383457 Msa0481960:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 3_3:-88383334 Msa0481960:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 3_3:+88383302 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 3_3:-88383027 Msa0481960:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.484494 3_3:-88383119 Msa0481960:CDS
TGAATAATTGGAGGAGGAGG+AGG 0.484728 3_3:+88386312 None:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 3_3:-88382914 Msa0481960:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 3_3:-88386071 Msa0481960:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 3_3:+88382812 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 3_3:+88382486 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 3_3:-88382741 Msa0481960:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 3_3:+88382811 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 3_3:-88383043 Msa0481960:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 3_3:+88382972 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 3_3:-88382784 Msa0481960:CDS
GGGATTTGAAGGTAGGGTGG+AGG 0.509242 3_3:+88386403 None:intergenic
ACTGCATCAGCTTTCGCCTG+TGG 0.510766 3_3:+88383271 None:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 3_3:-88382659 Msa0481960:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 3_3:-88382375 Msa0481960:three_prime_UTR
TCTGAGGCATTTACAGCAAA+GGG 0.516038 3_3:-88382696 Msa0481960:CDS
AGTGGGATTTGAAGGTAGGG+TGG 0.523055 3_3:+88386400 None:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.523232 3_3:+88383424 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 3_3:+88382481 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 3_3:-88386206 Msa0481960:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 3_3:+88383066 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 3_3:+88386052 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 3_3:+88382862 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 3_3:-88382770 Msa0481960:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 3_3:+88386416 None:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 3_3:-88382697 Msa0481960:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 3_3:+88382920 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 3_3:+88382660 None:intergenic
AGAGAGAGAGCAGTTGCTGT+TGG 0.538410 3_3:+88386535 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 3_3:+88383303 None:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 3_3:+88386309 None:intergenic
CTGTGCTTTGATAGAACCCT+TGG 0.544422 3_3:-88383122 Msa0481960:CDS
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 3_3:-88386198 Msa0481960:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 3_3:-88386308 Msa0481960:CDS
GGCGAAAGCTGATGCAGTAA+TGG 0.549627 3_3:-88383266 Msa0481960:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 3_3:+88386303 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 3_3:-88386301 Msa0481960:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 3_3:-88383013 Msa0481960:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 3_3:+88386187 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 3_3:+88382816 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 3_3:-88386304 Msa0481960:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 3_3:+88383348 None:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 3_3:+88386274 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 3_3:-88386300 Msa0481960:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 3_3:-88382499 Msa0481960:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 3_3:-88382473 Msa0481960:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 3_3:-88383464 Msa0481960:CDS
AGCTTCTATAATAATTGTGT+CGG 0.572699 3_3:+88386270 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 3_3:-88383059 Msa0481960:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 3_3:-88382431 Msa0481960:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 3_3:+88383304 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 3_3:-88383287 Msa0481960:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 3_3:+88383182 None:intergenic
AGCACGACGGACGGCTAATG+GGG 0.582077 3_3:+88386234 None:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 3_3:+88386306 None:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 3_3:+88386482 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 3_3:+88383181 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 3_3:+88386080 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 3_3:-88382490 Msa0481960:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 3_3:+88383309 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 3_3:+88386225 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 3_3:-88386121 Msa0481960:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 3_3:-88386144 Msa0481960:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 3_3:-88382785 Msa0481960:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 3_3:-88382487 Msa0481960:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 3_3:+88386195 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 3_3:-88383298 Msa0481960:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 3_3:-88386362 Msa0481960:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 3_3:-88383026 Msa0481960:CDS
ATGACACCTTCTCTAAGGAT+CGG 0.626935 3_3:+88382944 None:intergenic
AGCTATAGGGAGATCACTTG+GGG 0.628255 3_3:+88382661 None:intergenic
ACTGCATTGACATCCGAGGA+AGG 0.632924 3_3:-88383079 Msa0481960:CDS
CATTCATCATAGTCCACCAA+GGG 0.639137 3_3:+88383106 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 3_3:-88383056 Msa0481960:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 3_3:-88383461 Msa0481960:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 3_3:+88386168 None:intergenic
AGGGAACCGATCCTTAGAGA+AGG 0.656837 3_3:-88382950 Msa0481960:CDS
AAGTGATCGATGTAAATACA+GGG 0.660329 3_3:-88382969 Msa0481960:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 3_3:-88382783 Msa0481960:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 3_3:-88382726 Msa0481960:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 3_3:-88382712 Msa0481960:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 3_3:+88383105 None:intergenic
CAGAACTGCATTGACATCCG+AGG 0.673802 3_3:-88383083 Msa0481960:CDS
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 3_3:+88386353 None:intergenic
AAATACATAAAGTCATATGG+GGG 0.689008 3_3:+88386483 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 3_3:+88382476 None:intergenic
AATACATAAAGTCATATGGG+GGG 0.709695 3_3:+88386484 None:intergenic
CGGACGGCTAATGGGGTCTG+CGG 0.717038 3_3:+88386241 None:intergenic
GCATTGACATCCGAGGAAGG+TGG 0.729651 3_3:-88383076 Msa0481960:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 3_3:+88386221 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 3_3:-88386150 Msa0481960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAACAAAAAAAATTAAT+TGG - chr3_3:88382937-88382956 Msa0481960:CDS 10.0%
!!! CTTTATTTTTTATTTAAAGT+CGG + chr3_3:88385231-88385250 None:intergenic 10.0%
!! AAAATTTCTATAGAAAAAAA+AGG - chr3_3:88386360-88386379 Msa0481960:exon 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG - chr3_3:88386361-88386380 Msa0481960:exon 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG - chr3_3:88382966-88382985 Msa0481960:CDS 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG - chr3_3:88383419-88383438 Msa0481960:CDS 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG - chr3_3:88383791-88383810 Msa0481960:intron 15.0%
!!! GATAAACTTTTTTTTTTTAG+AGG + chr3_3:88383957-88383976 None:intergenic 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG - chr3_3:88383961-88383980 Msa0481960:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG + chr3_3:88385316-88385335 None:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG + chr3_3:88382422-88382441 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG + chr3_3:88382445-88382464 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG + chr3_3:88382912-88382931 None:intergenic 20.0%
!!! TTTTTTGCATAAGAATGATA+AGG - chr3_3:88383240-88383259 Msa0481960:CDS 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG + chr3_3:88383464-88383483 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG + chr3_3:88383465-88383484 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG - chr3_3:88383511-88383530 Msa0481960:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG - chr3_3:88383598-88383617 Msa0481960:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG - chr3_3:88383599-88383618 Msa0481960:intron 20.0%
!!! CTTTTTTTTTTTAGAGGAAT+TGG + chr3_3:88383951-88383970 None:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG + chr3_3:88384030-88384049 None:intergenic 20.0%
!! GTAGGAAAAAAAAAATACAA+AGG + chr3_3:88384150-88384169 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG - chr3_3:88384194-88384213 Msa0481960:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG - chr3_3:88384195-88384214 Msa0481960:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG - chr3_3:88385253-88385272 Msa0481960:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG - chr3_3:88385403-88385422 Msa0481960:intron 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG - chr3_3:88386313-88386332 Msa0481960:CDS 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG - chr3_3:88386326-88386345 Msa0481960:CDS 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG - chr3_3:88386369-88386388 Msa0481960:five_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG - chr3_3:88386370-88386389 Msa0481960:five_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG - chr3_3:88386525-88386544 Msa0481960:five_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG + chr3_3:88382420-88382439 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG + chr3_3:88382421-88382440 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG + chr3_3:88382423-88382442 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG + chr3_3:88382633-88382652 None:intergenic 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG - chr3_3:88383604-88383623 Msa0481960:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG + chr3_3:88383657-88383676 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG - chr3_3:88383903-88383922 Msa0481960:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG + chr3_3:88384045-88384064 None:intergenic 25.0%
! AAAAAAAAATACAAAGGTGG+TGG + chr3_3:88384144-88384163 None:intergenic 25.0%
! GGAAAAAAAAAATACAAAGG+TGG + chr3_3:88384147-88384166 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG - chr3_3:88384202-88384221 Msa0481960:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG - chr3_3:88384297-88384316 Msa0481960:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG - chr3_3:88384298-88384317 Msa0481960:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG + chr3_3:88384565-88384584 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG + chr3_3:88384723-88384742 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG + chr3_3:88384905-88384924 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG - chr3_3:88384904-88384923 Msa0481960:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG - chr3_3:88384981-88385000 Msa0481960:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG - chr3_3:88384982-88385001 Msa0481960:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG - chr3_3:88385195-88385214 Msa0481960:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG + chr3_3:88385342-88385361 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG + chr3_3:88385366-88385385 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG - chr3_3:88385436-88385455 Msa0481960:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG - chr3_3:88385439-88385458 Msa0481960:intron 25.0%
! ATCAACAAACCAATTATTAG+TGG - chr3_3:88385560-88385579 Msa0481960:intron 25.0%
! GAATAAGGCTAAGATTATTA+GGG + chr3_3:88385682-88385701 None:intergenic 25.0%
! AGAATAAGGCTAAGATTATT+AGG + chr3_3:88385683-88385702 None:intergenic 25.0%
! AACATCATATCTCAAATTGA+CGG - chr3_3:88386115-88386134 Msa0481960:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG - chr3_3:88386282-88386301 Msa0481960:CDS 25.0%
! CAAATGGAAAACCAAAAATA+AGG + chr3_3:88386327-88386346 None:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG - chr3_3:88386325-88386344 Msa0481960:CDS 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG - chr3_3:88386327-88386346 Msa0481960:CDS 25.0%
! TTGTAAGACATTAAGAAACA+TGG - chr3_3:88386469-88386488 Msa0481960:five_prime_UTR 25.0%
AATACATAAAGTCATATGGG+GGG + chr3_3:88382419-88382438 None:intergenic 30.0%
! TCTATAATAATTGTGTCGGT+AGG + chr3_3:88382629-88382648 None:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG + chr3_3:88382879-88382898 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG - chr3_3:88382972-88382991 Msa0481960:CDS 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG - chr3_3:88383037-88383056 Msa0481960:CDS 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG - chr3_3:88383038-88383057 Msa0481960:CDS 30.0%
TTGCATAATCAATTCCTTTC+TGG - chr3_3:88383344-88383363 Msa0481960:CDS 30.0%
TTGCATACAAGTAGCATATA+CGG - chr3_3:88383371-88383390 Msa0481960:CDS 30.0%
CTTAACAAACTATCTAGTCT+AGG + chr3_3:88383593-88383612 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG - chr3_3:88383603-88383622 Msa0481960:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG - chr3_3:88383605-88383624 Msa0481960:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG + chr3_3:88383683-88383702 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG - chr3_3:88383683-88383702 Msa0481960:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG + chr3_3:88383769-88383788 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG - chr3_3:88383796-88383815 Msa0481960:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG + chr3_3:88383800-88383819 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG - chr3_3:88383968-88383987 Msa0481960:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG + chr3_3:88383979-88383998 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG - chr3_3:88383979-88383998 Msa0481960:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG + chr3_3:88384082-88384101 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG - chr3_3:88384170-88384189 Msa0481960:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG + chr3_3:88384280-88384299 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG - chr3_3:88384390-88384409 Msa0481960:intron 30.0%
! CATTTACACCTCACAAATTT+TGG + chr3_3:88384421-88384440 None:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG + chr3_3:88384466-88384485 None:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG + chr3_3:88384471-88384490 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG - chr3_3:88384559-88384578 Msa0481960:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG - chr3_3:88384613-88384632 Msa0481960:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG + chr3_3:88384775-88384794 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG + chr3_3:88384819-88384838 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG + chr3_3:88385144-88385163 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG - chr3_3:88385144-88385163 Msa0481960:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG - chr3_3:88385273-88385292 Msa0481960:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG + chr3_3:88385493-88385512 None:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG - chr3_3:88385496-88385515 Msa0481960:intron 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG + chr3_3:88385555-88385574 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG - chr3_3:88385566-88385585 Msa0481960:intron 30.0%
! TTGGATTTGTTTCGAGAATA+AGG + chr3_3:88385697-88385716 None:intergenic 30.0%
TGTATTTACATCGATCACTT+TGG + chr3_3:88385931-88385950 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG - chr3_3:88385930-88385949 Msa0481960:intron 30.0%
AAGTGATCGATGTAAATACA+GGG - chr3_3:88385931-88385950 Msa0481960:intron 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG + chr3_3:88386041-88386060 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG + chr3_3:88386042-88386061 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG + chr3_3:88386092-88386111 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG - chr3_3:88386116-88386135 Msa0481960:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG - chr3_3:88386481-88386500 Msa0481960:five_prime_UTR 30.0%
!!! AAGTTTTAGAGAGAGAGAGT+GGG + chr3_3:88382520-88382539 None:intergenic 35.0%
!!! AAAGTTTTAGAGAGAGAGAG+TGG + chr3_3:88382521-88382540 None:intergenic 35.0%
AAGTTTCCTAATATCACGTG+CGG + chr3_3:88382735-88382754 None:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG - chr3_3:88382750-88382769 Msa0481960:CDS 35.0%
ATGCAAAAAACGCTATGCTT+AGG + chr3_3:88383230-88383249 None:intergenic 35.0%
AGAATGATAAGGAGAAGACA+TGG - chr3_3:88383251-88383270 Msa0481960:CDS 35.0%
TTGTATGCAAAGATCCAGAA+AGG + chr3_3:88383361-88383380 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG - chr3_3:88383377-88383396 Msa0481960:CDS 35.0%
TCTTGGATTCTGTTCTTTGT+TGG - chr3_3:88383436-88383455 Msa0481960:CDS 35.0%
CTTGGATTCTGTTCTTTGTT+GGG - chr3_3:88383437-88383456 Msa0481960:CDS 35.0%
TCCATATCTTTGCATCTCAT+TGG - chr3_3:88383481-88383500 Msa0481960:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG + chr3_3:88383485-88383504 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG - chr3_3:88383485-88383504 Msa0481960:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG + chr3_3:88383577-88383596 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG - chr3_3:88383690-88383709 Msa0481960:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG - chr3_3:88383755-88383774 Msa0481960:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG + chr3_3:88383839-88383858 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG - chr3_3:88383988-88384007 Msa0481960:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG - chr3_3:88383991-88384010 Msa0481960:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG + chr3_3:88384078-88384097 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG + chr3_3:88384168-88384187 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG - chr3_3:88384237-88384256 Msa0481960:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG + chr3_3:88384245-88384264 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG - chr3_3:88384260-88384279 Msa0481960:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG - chr3_3:88384274-88384293 Msa0481960:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG - chr3_3:88384313-88384332 Msa0481960:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG - chr3_3:88384350-88384369 Msa0481960:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG - chr3_3:88384389-88384408 Msa0481960:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG + chr3_3:88384467-88384486 None:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG + chr3_3:88384472-88384491 None:intergenic 35.0%
TTATGCCAAGCAATTGTGAA+GGG - chr3_3:88384481-88384500 Msa0481960:intron 35.0%
AAAATCCCTTCACAATTGCT+TGG + chr3_3:88384489-88384508 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG + chr3_3:88384528-88384547 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG - chr3_3:88384539-88384558 Msa0481960:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG + chr3_3:88384804-88384823 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG + chr3_3:88384805-88384824 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG - chr3_3:88384808-88384827 Msa0481960:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG - chr3_3:88384815-88384834 Msa0481960:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG + chr3_3:88384820-88384839 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG - chr3_3:88384830-88384849 Msa0481960:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG - chr3_3:88384885-88384904 Msa0481960:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG + chr3_3:88384934-88384953 None:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG - chr3_3:88385003-88385022 Msa0481960:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG - chr3_3:88385008-88385027 Msa0481960:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG + chr3_3:88385098-88385117 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG + chr3_3:88385182-88385201 None:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG - chr3_3:88385443-88385462 Msa0481960:intron 35.0%
GACTTGAGGAAACTAAGTAT+TGG + chr3_3:88385479-88385498 None:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG + chr3_3:88385600-88385619 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG + chr3_3:88385716-88385735 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG + chr3_3:88385721-88385740 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG + chr3_3:88385722-88385741 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG + chr3_3:88385739-88385758 None:intergenic 35.0%
!!! GCATTTTTCAGCTGTTTTTG+AGG + chr3_3:88385759-88385778 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG + chr3_3:88386067-88386086 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG + chr3_3:88386091-88386110 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG - chr3_3:88386117-88386136 Msa0481960:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG - chr3_3:88386159-88386178 Msa0481960:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG + chr3_3:88386343-88386362 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG - chr3_3:88386401-88386420 Msa0481960:five_prime_UTR 35.0%
TTTCTCTCACCTCTTCACAA+TGG - chr3_3:88382538-88382557 Msa0481960:three_prime_UTR 40.0%
CTCCTCCTCCAATTATTCAT+GGG - chr3_3:88382592-88382611 Msa0481960:three_prime_UTR 40.0%
TTCCCATGAATAATTGGAGG+AGG + chr3_3:88382597-88382616 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG - chr3_3:88382596-88382615 Msa0481960:three_prime_UTR 40.0%
TCCTTCCCATGAATAATTGG+AGG + chr3_3:88382600-88382619 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG - chr3_3:88382599-88382618 Msa0481960:three_prime_UTR 40.0%
CCAATTATTCATGGGAAGGA+GGG - chr3_3:88382600-88382619 Msa0481960:three_prime_UTR 40.0%
GCTCTTCAGCTTCTTAAATC+CGG - chr3_3:88382686-88382705 Msa0481960:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG + chr3_3:88382851-88382870 None:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG - chr3_3:88383489-88383508 Msa0481960:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG + chr3_3:88383823-88383842 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG + chr3_3:88384075-88384094 None:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG - chr3_3:88384247-88384266 Msa0481960:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG + chr3_3:88384463-88384482 None:intergenic 40.0%
GTTATGCCAAGCAATTGTGA+AGG - chr3_3:88384480-88384499 Msa0481960:intron 40.0%
AGATGAGAGGGTAGGTAATT+TGG + chr3_3:88384516-88384535 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG + chr3_3:88384529-88384548 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG + chr3_3:88384543-88384562 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG + chr3_3:88384656-88384675 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG - chr3_3:88384659-88384678 Msa0481960:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG - chr3_3:88384708-88384727 Msa0481960:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG + chr3_3:88384719-88384738 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG + chr3_3:88384760-88384779 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG - chr3_3:88384829-88384848 Msa0481960:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG - chr3_3:88384834-88384853 Msa0481960:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG + chr3_3:88384886-88384905 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG - chr3_3:88384884-88384903 Msa0481960:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG - chr3_3:88384886-88384905 Msa0481960:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG + chr3_3:88385012-88385031 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG + chr3_3:88385030-88385049 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG - chr3_3:88385153-88385172 Msa0481960:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG - chr3_3:88385154-88385173 Msa0481960:intron 40.0%
TAAAGTCGGAGTTCATTCTC+CGG + chr3_3:88385217-88385236 None:intergenic 40.0%
!! CATAACTGGTCTTATCTTGC+AGG - chr3_3:88385417-88385436 Msa0481960:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG + chr3_3:88385599-88385618 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG + chr3_3:88385601-88385620 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG - chr3_3:88385602-88385621 Msa0481960:intron 40.0%
CATTCATCATAGTCCACCAA+GGG + chr3_3:88385797-88385816 None:intergenic 40.0%
! ATGACACCTTCTCTAAGGAT+CGG + chr3_3:88385959-88385978 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG - chr3_3:88386204-88386223 Msa0481960:CDS 40.0%
AGGGTGGAGGTTATTTAGAG+AGG + chr3_3:88382487-88382506 None:intergenic 45.0%
GAGAGTGGGATTTGAAGGTA+GGG + chr3_3:88382506-88382525 None:intergenic 45.0%
AGAGAGTGGGATTTGAAGGT+AGG + chr3_3:88382507-88382526 None:intergenic 45.0%
AGAGAGAGAGTGGGATTTGA+AGG + chr3_3:88382511-88382530 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG + chr3_3:88382591-88382610 None:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG + chr3_3:88382594-88382613 None:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG - chr3_3:88382591-88382610 Msa0481960:three_prime_UTR 45.0%
CCCTCCTTCCCATGAATAAT+TGG + chr3_3:88382603-88382622 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG + chr3_3:88382682-88382701 None:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG - chr3_3:88382726-88382745 Msa0481960:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG - chr3_3:88382756-88382775 Msa0481960:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG + chr3_3:88383105-88383124 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG - chr3_3:88383488-88383507 Msa0481960:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG - chr3_3:88384063-88384082 Msa0481960:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG - chr3_3:88384331-88384350 Msa0481960:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG - chr3_3:88384365-88384384 Msa0481960:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG + chr3_3:88384369-88384388 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG - chr3_3:88384410-88384429 Msa0481960:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG - chr3_3:88384427-88384446 Msa0481960:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG + chr3_3:88384524-88384543 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG + chr3_3:88384686-88384705 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG + chr3_3:88384754-88384773 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG - chr3_3:88384838-88384857 Msa0481960:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG + chr3_3:88385037-88385056 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG - chr3_3:88385045-88385064 Msa0481960:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG + chr3_3:88385051-88385070 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG + chr3_3:88385052-88385071 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG + chr3_3:88385055-88385074 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG - chr3_3:88385055-88385074 Msa0481960:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG - chr3_3:88385166-88385185 Msa0481960:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG + chr3_3:88385170-88385189 None:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG + chr3_3:88385572-88385591 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG + chr3_3:88385594-88385613 None:intergenic 45.0%
CTGTGCTTTGATAGAACCCT+TGG - chr3_3:88385778-88385797 Msa0481960:intron 45.0%
TGCTTTGATAGAACCCTTGG+TGG - chr3_3:88385781-88385800 Msa0481960:intron 45.0%
GCATTCATCATAGTCCACCA+AGG + chr3_3:88385798-88385817 None:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG + chr3_3:88385837-88385856 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG - chr3_3:88385857-88385876 Msa0481960:intron 45.0%
AAAACGGCACTCTCCAAAGT+AGG - chr3_3:88385873-88385892 Msa0481960:intron 45.0%
AAACGGCACTCTCCAAAGTA+GGG - chr3_3:88385874-88385893 Msa0481960:intron 45.0%
CAACAGCATGTTCCCTACTT+TGG + chr3_3:88385889-88385908 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG - chr3_3:88385887-88385906 Msa0481960:intron 45.0%
CTGGAATGACACCTTCTCTA+AGG + chr3_3:88385964-88385983 None:intergenic 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG - chr3_3:88385962-88385981 Msa0481960:intron 45.0%
CTACTTGAGCTCACTGTACA+AGG - chr3_3:88385986-88386005 Msa0481960:intron 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG + chr3_3:88386073-88386092 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG + chr3_3:88386087-88386106 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG - chr3_3:88386130-88386149 Msa0481960:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG - chr3_3:88386174-88386193 Msa0481960:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG - chr3_3:88386188-88386207 Msa0481960:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG - chr3_3:88386203-88386222 Msa0481960:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG + chr3_3:88386242-88386261 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG + chr3_3:88386243-88386262 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG + chr3_3:88386427-88386446 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG - chr3_3:88386427-88386446 Msa0481960:five_prime_UTR 45.0%
!!! TTTATTTTGTTTTTTATTAT+TGG - chr3_3:88383537-88383556 Msa0481960:intron 5.0%
AGAGAGAGAGCAGTTGCTGT+TGG + chr3_3:88382368-88382387 None:intergenic 50.0%
AGTGGGATTTGAAGGTAGGG+TGG + chr3_3:88382503-88382522 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG + chr3_3:88382550-88382569 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG + chr3_3:88382569-88382588 None:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG - chr3_3:88382779-88382798 Msa0481960:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG - chr3_3:88382811-88382830 Msa0481960:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG - chr3_3:88382829-88382848 Msa0481960:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG - chr3_3:88383085-88383104 Msa0481960:CDS 50.0%
ATGCCTTGAAGCCATGGTGT+TGG - chr3_3:88383091-88383110 Msa0481960:CDS 50.0%
TCTCCAACACCATGGCTTCA+AGG + chr3_3:88383097-88383116 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG - chr3_3:88384320-88384339 Msa0481960:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG - chr3_3:88384364-88384383 Msa0481960:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG + chr3_3:88384370-88384389 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG - chr3_3:88384368-88384387 Msa0481960:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG - chr3_3:88384666-88384685 Msa0481960:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG - chr3_3:88384667-88384686 Msa0481960:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG + chr3_3:88384796-88384815 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG + chr3_3:88384800-88384819 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG - chr3_3:88384837-88384856 Msa0481960:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG - chr3_3:88384847-88384866 Msa0481960:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG + chr3_3:88385075-88385094 None:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG - chr3_3:88385079-88385098 Msa0481960:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG - chr3_3:88385080-88385099 Msa0481960:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG + chr3_3:88385089-88385108 None:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG - chr3_3:88385165-88385184 Msa0481960:intron 50.0%
GGCGAAAGCTGATGCAGTAA+TGG - chr3_3:88385634-88385653 Msa0481960:intron 50.0%
! CAGAACTGCATTGACATCCG+AGG - chr3_3:88385817-88385836 Msa0481960:intron 50.0%
! ACTGCATTGACATCCGAGGA+AGG - chr3_3:88385821-88385840 Msa0481960:intron 50.0%
AGGTGGTATTCTTGCAGTCG+TGG - chr3_3:88385841-88385860 Msa0481960:intron 50.0%
TGGTATTCTTGCAGTCGTGG+AGG - chr3_3:88385844-88385863 Msa0481960:intron 50.0%
AGGGAACCGATCCTTAGAGA+AGG - chr3_3:88385950-88385969 Msa0481960:intron 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG + chr3_3:88385983-88386002 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG + chr3_3:88386016-88386035 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG + chr3_3:88386244-88386263 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG - chr3_3:88386241-88386260 Msa0481960:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG + chr3_3:88386255-88386274 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG + chr3_3:88386256-88386275 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG + chr3_3:88386422-88386441 None:intergenic 50.0%
CATATGGGGGGAGAGAGAGA+AGG + chr3_3:88382407-88382426 None:intergenic 55.0%
GGGATTTGAAGGTAGGGTGG+AGG + chr3_3:88382500-88382519 None:intergenic 55.0%
ATTGGAGGAGGAGGAGGAAC+AGG + chr3_3:88382585-88382604 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG + chr3_3:88382678-88382697 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG - chr3_3:88382694-88382713 Msa0481960:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG + chr3_3:88382823-88382842 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG - chr3_3:88383618-88383637 Msa0481960:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG - chr3_3:88384668-88384687 Msa0481960:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG + chr3_3:88384674-88384693 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG + chr3_3:88384797-88384816 None:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG + chr3_3:88385084-88385103 None:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG - chr3_3:88385083-88385102 Msa0481960:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG + chr3_3:88385088-88385107 None:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG + chr3_3:88385090-88385109 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG - chr3_3:88385613-88385632 Msa0481960:intron 55.0%
CTGCATCAGCTTTCGCCTGT+GGG + chr3_3:88385631-88385650 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG + chr3_3:88385632-88385651 None:intergenic 55.0%
! GCATTGACATCCGAGGAAGG+TGG - chr3_3:88385824-88385843 Msa0481960:intron 55.0%
TATGCCAGTCCAGGCCATTG+TGG - chr3_3:88386410-88386429 Msa0481960:five_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG + chr3_3:88382578-88382597 None:intergenic 60.0%
AGCACGACGGACGGCTAATG+GGG + chr3_3:88382669-88382688 None:intergenic 60.0%
GAGCACGACGGACGGCTAAT+GGG + chr3_3:88382670-88382689 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+TGG + chr3_3:88382671-88382690 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG + chr3_3:88384671-88384690 None:intergenic 60.0%
ACCTCCACAATGGCCTGGAC+TGG + chr3_3:88386417-88386436 None:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG + chr3_3:88382582-88382601 None:intergenic 65.0%
CGGACGGCTAATGGGGTCTG+CGG + chr3_3:88382662-88382681 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG - chr3_3:88382702-88382721 Msa0481960:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG + chr3_3:88382716-88382735 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG - chr3_3:88386413-88386432 Msa0481960:five_prime_UTR 65.0%
AAGCCGCAACTCCGGCACGC+CGG + chr3_3:88382708-88382727 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 88382360 88386562 88382360 ID=Msa0481960;Name=Msa0481960
chr3_3 mRNA 88382360 88386562 88382360 ID=Msa0481960-mRNA-1;Parent=Msa0481960;Name=Msa0481960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197|1|1|1|1|1|2|271|395
chr3_3 exon 88382360 88383483 88382360 ID=Msa0481960-mRNA-1:exon:25737;Parent=Msa0481960-mRNA-1
chr3_3 exon 88386031 88386562 88386031 ID=Msa0481960-mRNA-1:exon:25736;Parent=Msa0481960-mRNA-1
chr3_3 five_prime_UTR 88386366 88386562 88386366 ID=Msa0481960-mRNA-1:five_prime_utr;Parent=Msa0481960-mRNA-1
chr3_3 CDS 88386031 88386365 88386031 ID=Msa0481960-mRNA-1:cds;Parent=Msa0481960-mRNA-1
chr3_3 CDS 88382631 88383483 88382631 ID=Msa0481960-mRNA-1:cds;Parent=Msa0481960-mRNA-1
chr3_3 three_prime_UTR 88382360 88382630 88382360 ID=Msa0481960-mRNA-1:three_prime_utr;Parent=Msa0481960-mRNA-1
Gene Sequence

>Msa0481960

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCATTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCCTTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATCCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa0481960

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSLILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*