AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1377300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377300 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa1377300 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 4.16e-180 505
Msa1377300 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 6.60e-72 229
Msa1377300 MtrunA17_Chr6g0449461 35.913 323 190 8 48 360 9 324 1.00e-45 160
Msa1377300 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.84e-35 131
Msa1377300 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.05e-32 124
Msa1377300 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.32e-31 126
Msa1377300 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.76e-31 125
Msa1377300 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 8.21e-30 120
Msa1377300 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 4.50e-29 119
Msa1377300 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 3.03e-27 113
Msa1377300 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.39e-26 112
Msa1377300 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.46e-26 110
Msa1377300 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.72e-25 107
Msa1377300 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.08e-23 100
Msa1377300 MtrunA17_Chr2g0290151 29.464 224 123 5 124 317 147 365 3.74e-11 64.7
Msa1377300 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.43e-22 100
Msa1377300 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 4.23e-20 92.4
Msa1377300 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.62e-19 90.9
Msa1377300 MtrunA17_Chr5g0437411 28.977 176 121 3 124 298 406 578 1.74e-11 65.9
Msa1377300 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.25e-19 89.0
Msa1377300 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 6.77e-18 85.9
Msa1377300 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 2.86e-16 80.9
Msa1377300 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 6.05e-14 73.6
Msa1377300 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.82e-13 72.0
Msa1377300 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.15e-12 69.7
Msa1377300 MtrunA17_Chr7g0234671 27.407 270 180 9 58 318 188 450 1.26e-12 68.9
Msa1377300 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.63e-12 68.6
Msa1377300 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.79e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1377300 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.26e-147 424
Msa1377300 AT4G12710.1 47.164 335 169 5 51 378 57 390 6.41e-80 251
Msa1377300 AT5G14510.1 36.760 321 188 8 48 360 9 322 1.71e-42 152
Msa1377300 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa1377300 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa1377300 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa1377300 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa1377300 AT2G23140.1 32.857 280 180 5 41 318 546 819 6.05e-35 137
Msa1377300 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.05e-33 127
Msa1377300 AT5G67340.1 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa1377300 AT5G67340.2 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa1377300 AT5G58680.1 34.586 266 164 7 58 319 80 339 3.37e-30 119
Msa1377300 AT3G54790.2 33.929 280 176 6 48 324 445 718 3.39e-30 123
Msa1377300 AT3G54790.3 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa1377300 AT3G54790.1 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa1377300 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.41e-27 114
Msa1377300 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.22e-26 110
Msa1377300 AT1G71020.1 33.451 284 182 6 40 320 342 621 2.86e-26 111
Msa1377300 AT4G31890.3 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1377300 AT4G31890.2 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1377300 AT4G31890.1 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1377300 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.09e-25 108
Msa1377300 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.00e-24 105
Msa1377300 AT1G67530.2 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1377300 AT1G67530.1 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1377300 AT1G67530.4 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1377300 AT4G16490.1 30.175 285 149 6 85 326 189 466 2.57e-23 101
Msa1377300 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa1377300 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa1377300 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.98e-21 95.9
Msa1377300 AT1G23030.1 27.402 281 160 5 81 320 333 610 1.61e-20 94.0
Msa1377300 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.15e-18 88.6
Msa1377300 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.47e-18 88.2
Msa1377300 AT5G42340.1 28.114 281 161 6 79 320 379 657 1.11e-16 82.4
Msa1377300 AT3G07360.5 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.3 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.9 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.6 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.2 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.8 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.10 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.7 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.4 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1377300 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.05e-14 75.9
Msa1377300 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.69e-14 75.5
Msa1377300 AT1G60190.1 28.808 302 200 11 30 319 366 664 9.66e-13 70.5
Msa1377300 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.65e-12 69.3
Msa1377300 AT4G21350.1 24.907 269 191 5 56 321 111 371 7.46e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAGGCTAAGATTATT+AGG 0.196913 tig0019900:-5726 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 tig0019900:-2454 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 tig0019900:-2607 None:intergenic
TTGGATTTGTTTCGAGAATA+AGG 0.252961 tig0019900:-5740 None:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 tig0019900:-5615 None:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 tig0019900:+2733 Msa1377300:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 tig0019900:-6299 None:intergenic
AGAGAGTGGGATTTGAAGGT+AGG 0.350100 tig0019900:-2516 None:intergenic
GACAAATACATAAAGTCATA+TGG 0.355469 tig0019900:-2432 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.365119 tig0019900:+6008 Msa1377300:CDS
ATCAACAAACCAATTATTAG+TGG 0.366264 tig0019900:+5606 Msa1377300:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 tig0019900:-5932 None:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 tig0019900:+2598 Msa1377300:CDS
GAGCACGACGGACGGCTAAC+GGG 0.401496 tig0019900:-2674 None:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 tig0019900:-6298 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 tig0019900:-6085 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 tig0019900:-6110 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 tig0019900:-6116 None:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 tig0019900:-2582 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 tig0019900:+5976 Msa1377300:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 tig0019900:-2573 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 tig0019900:-6386 None:intergenic
GAGAGTGGGATTTGAAGGTA+GGG 0.442292 tig0019900:-2515 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 tig0019900:+2818 Msa1377300:CDS
GTCAGAAAATCTAAATCTAC+AGG 0.455369 tig0019900:+5542 Msa1377300:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 tig0019900:-6287 None:intergenic
CTGCATCAGCTTTCGCCTGT+GGG 0.462869 tig0019900:-5674 None:intergenic
GAATAAGGCTAAGATTATTA+GGG 0.463501 tig0019900:-5725 None:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 tig0019900:-5759 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 tig0019900:+2693 Msa1377300:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 tig0019900:+5489 Msa1377300:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 tig0019900:+5612 Msa1377300:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 tig0019900:-5644 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 tig0019900:+5919 Msa1377300:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.484494 tig0019900:+5827 Msa1377300:CDS
ACAAATACATAAAGTCATAT+GGG 0.484531 tig0019900:-2431 None:intergenic
TGAATAATTGGAGGAGGAGG+AGG 0.484728 tig0019900:-2595 None:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 tig0019900:+6032 Msa1377300:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 tig0019900:+2836 Msa1377300:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 tig0019900:-6134 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 tig0019900:-6460 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 tig0019900:+6205 Msa1377300:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 tig0019900:-6135 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 tig0019900:+5903 Msa1377300:CDS
GAGAGAAGAGCAGTTGCTGT+TGG 0.503379 tig0019900:-2378 None:intergenic
TGTATTTACATCGATCACTT+TGG 0.506488 tig0019900:-5974 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 tig0019900:+6162 Msa1377300:CDS
GGGATTTGAAGGTAGGGTGG+AGG 0.509242 tig0019900:-2509 None:intergenic
ACTGCATCAGCTTTCGCCTG+TGG 0.510766 tig0019900:-5675 None:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 tig0019900:+6287 Msa1377300:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 tig0019900:+6571 Msa1377300:three_prime_UTR
TCTGAGGCATTTACAGCAAA+GGG 0.516038 tig0019900:+6250 Msa1377300:CDS
AGTGGGATTTGAAGGTAGGG+TGG 0.523055 tig0019900:-2512 None:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.523232 tig0019900:-5522 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 tig0019900:-6465 None:intergenic
ATGACACCTTCTCTAAGAAT+CGG 0.525032 tig0019900:-6002 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 tig0019900:+2701 Msa1377300:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 tig0019900:-5880 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 tig0019900:-2855 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 tig0019900:-6084 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 tig0019900:+6176 Msa1377300:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 tig0019900:-2496 None:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 tig0019900:+6249 Msa1377300:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 tig0019900:-6026 None:intergenic
AGAGCACGACGGACGGCTAA+CGG 0.537195 tig0019900:-2675 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 tig0019900:-6286 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 tig0019900:-5643 None:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 tig0019900:-2598 None:intergenic
CTGTGCTTTGATAGAACCCT+TGG 0.544422 tig0019900:+5824 Msa1377300:CDS
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 tig0019900:+2709 Msa1377300:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 tig0019900:+2599 Msa1377300:CDS
GGCGAAAGCTGATGCAGTAA+TGG 0.549627 tig0019900:+5680 Msa1377300:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 tig0019900:-2604 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 tig0019900:+2606 Msa1377300:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 tig0019900:+5933 Msa1377300:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 tig0019900:-2720 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 tig0019900:-6130 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 tig0019900:+2603 Msa1377300:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 tig0019900:-5598 None:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 tig0019900:-2633 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 tig0019900:+2607 Msa1377300:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 tig0019900:+6447 Msa1377300:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 tig0019900:+6473 Msa1377300:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 tig0019900:+5482 Msa1377300:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 tig0019900:-2637 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 tig0019900:+5887 Msa1377300:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 tig0019900:+6515 Msa1377300:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 tig0019900:-5642 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 tig0019900:+5659 Msa1377300:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 tig0019900:-5764 None:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 tig0019900:-2601 None:intergenic
AGCACGACGGACGGCTAACG+GGG 0.589929 tig0019900:-2673 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 tig0019900:-5765 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 tig0019900:-2827 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 tig0019900:+6456 Msa1377300:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 tig0019900:-5637 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 tig0019900:-2682 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 tig0019900:+2786 Msa1377300:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 tig0019900:+2763 Msa1377300:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 tig0019900:+6161 Msa1377300:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 tig0019900:+6459 Msa1377300:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 tig0019900:-2712 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 tig0019900:+5648 Msa1377300:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 tig0019900:+2545 Msa1377300:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 tig0019900:+5920 Msa1377300:CDS
AGCTATAGGGAGATCACTTG+GGG 0.628255 tig0019900:-6285 None:intergenic
ACTGCATTGACATCCGAGGA+AGG 0.632924 tig0019900:+5867 Msa1377300:CDS
CAAATACATAAAGTCATATG+GGG 0.637123 tig0019900:-2430 None:intergenic
CATTCATCATAGTCCACCAA+GGG 0.639137 tig0019900:-5840 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 tig0019900:+5890 Msa1377300:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 tig0019900:+5485 Msa1377300:CDS
AGGGAACCGATTCTTAGAGA+AGG 0.647481 tig0019900:+5996 Msa1377300:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 tig0019900:-2739 None:intergenic
AAGTGATCGATGTAAATACA+GGG 0.660329 tig0019900:+5977 Msa1377300:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 tig0019900:+6163 Msa1377300:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 tig0019900:+6220 Msa1377300:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 tig0019900:+6234 Msa1377300:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 tig0019900:-5841 None:intergenic
CAGAACTGCATTGACATCCG+AGG 0.673802 tig0019900:+5863 Msa1377300:CDS
CGGACGGCTAACGGGGTCTG+CGG 0.676544 tig0019900:-2666 None:intergenic
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 tig0019900:-2554 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 tig0019900:-6470 None:intergenic
GCATTGACATCCGAGGAAGG+TGG 0.729651 tig0019900:+5870 Msa1377300:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 tig0019900:-2686 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 tig0019900:+2757 Msa1377300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTCTATAGAAAAAAA+AGG + tig0019900:6406-6425 Msa1377300:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + tig0019900:6407-6426 Msa1377300:three_prime_UTR 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + tig0019900:2972-2991 Msa1377300:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + tig0019900:3427-3446 Msa1377300:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + tig0019900:3799-3818 Msa1377300:intron 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + tig0019900:3968-3987 Msa1377300:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - tig0019900:5362-5381 None:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG - tig0019900:2434-2453 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - tig0019900:2457-2476 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - tig0019900:2919-2938 None:intergenic 20.0%
!!! TTTTTTGCATAAGAATGATA+AGG + tig0019900:3248-3267 Msa1377300:intron 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - tig0019900:3472-3491 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - tig0019900:3473-3492 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + tig0019900:3519-3538 Msa1377300:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + tig0019900:3606-3625 Msa1377300:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + tig0019900:3607-3626 Msa1377300:intron 20.0%
!!! ACTTTTTTTTTTAGAGGAAT+TGG - tig0019900:3959-3978 None:intergenic 20.0%
!!! GGATAAACTTTTTTTTTTAG+AGG - tig0019900:3965-3984 None:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG - tig0019900:4037-4056 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + tig0019900:4242-4261 Msa1377300:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + tig0019900:4243-4262 Msa1377300:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + tig0019900:5299-5318 Msa1377300:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG + tig0019900:5449-5468 Msa1377300:intron 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG + tig0019900:6359-6378 Msa1377300:three_prime_UTR 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG + tig0019900:6372-6391 Msa1377300:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + tig0019900:6415-6434 Msa1377300:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + tig0019900:6416-6435 Msa1377300:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + tig0019900:6571-6590 Msa1377300:three_prime_UTR 20.0%
! CAAATACATAAAGTCATATG+GGG - tig0019900:2433-2452 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - tig0019900:2435-2454 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - tig0019900:2640-2659 None:intergenic 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + tig0019900:3612-3631 Msa1377300:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - tig0019900:3665-3684 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + tig0019900:3911-3930 Msa1377300:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG - tig0019900:4052-4071 None:intergenic 25.0%
! TAGGAAAAAAAATACAAAGG+TGG - tig0019900:4197-4216 None:intergenic 25.0%
! GAGTAGGAAAAAAAATACAA+AGG - tig0019900:4200-4219 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + tig0019900:4250-4269 Msa1377300:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + tig0019900:4344-4363 Msa1377300:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + tig0019900:4345-4364 Msa1377300:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - tig0019900:4611-4630 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - tig0019900:4769-4788 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - tig0019900:4951-4970 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + tig0019900:4950-4969 Msa1377300:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + tig0019900:5027-5046 Msa1377300:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + tig0019900:5028-5047 Msa1377300:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG + tig0019900:5241-5260 Msa1377300:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - tig0019900:5388-5407 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - tig0019900:5412-5431 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + tig0019900:5482-5501 Msa1377300:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + tig0019900:5485-5504 Msa1377300:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + tig0019900:5606-5625 Msa1377300:CDS 25.0%
! GAATAAGGCTAAGATTATTA+GGG - tig0019900:5728-5747 None:intergenic 25.0%
! AGAATAAGGCTAAGATTATT+AGG - tig0019900:5729-5748 None:intergenic 25.0%
! AACATCATATCTCAAATTGA+CGG + tig0019900:6161-6180 Msa1377300:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + tig0019900:6328-6347 Msa1377300:exon 25.0%
! CAAATGGAAAACCAAAAATA+AGG - tig0019900:6373-6392 None:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG + tig0019900:6371-6390 Msa1377300:three_prime_UTR 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG + tig0019900:6373-6392 Msa1377300:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + tig0019900:6515-6534 Msa1377300:three_prime_UTR 25.0%
!! AGAGAAAGTTTTTAGAGAGT+GGG - tig0019900:2532-2551 None:intergenic 30.0%
! TCTATAATAATTGTGTCGGT+AGG - tig0019900:2636-2655 None:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG - tig0019900:2886-2905 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + tig0019900:2978-2997 Msa1377300:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + tig0019900:3043-3062 Msa1377300:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + tig0019900:3044-3063 Msa1377300:intron 30.0%
TTGCATAATCAATTCCTTTC+TGG + tig0019900:3352-3371 Msa1377300:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + tig0019900:3379-3398 Msa1377300:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - tig0019900:3601-3620 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + tig0019900:3611-3630 Msa1377300:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + tig0019900:3613-3632 Msa1377300:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - tig0019900:3691-3710 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + tig0019900:3691-3710 Msa1377300:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - tig0019900:3777-3796 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + tig0019900:3804-3823 Msa1377300:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - tig0019900:3808-3827 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + tig0019900:3975-3994 Msa1377300:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - tig0019900:3986-4005 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + tig0019900:3986-4005 Msa1377300:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG - tig0019900:4089-4108 None:intergenic 30.0%
GAAAAAAAATACAAAGGTGG+TGG - tig0019900:4194-4213 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + tig0019900:4218-4237 Msa1377300:intron 30.0%
! ATAACCTCTTTCTTTTTCCA+AGG - tig0019900:4328-4347 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + tig0019900:4437-4456 Msa1377300:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - tig0019900:4468-4487 None:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG - tig0019900:4513-4532 None:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG - tig0019900:4518-4537 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + tig0019900:4605-4624 Msa1377300:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + tig0019900:4659-4678 Msa1377300:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - tig0019900:4821-4840 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - tig0019900:4865-4884 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - tig0019900:5190-5209 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + tig0019900:5190-5209 Msa1377300:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + tig0019900:5319-5338 Msa1377300:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG - tig0019900:5539-5558 None:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG + tig0019900:5542-5561 Msa1377300:CDS 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - tig0019900:5601-5620 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + tig0019900:5612-5631 Msa1377300:CDS 30.0%
! TTGGATTTGTTTCGAGAATA+AGG - tig0019900:5743-5762 None:intergenic 30.0%
TGTATTTACATCGATCACTT+TGG - tig0019900:5977-5996 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + tig0019900:5976-5995 Msa1377300:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + tig0019900:5977-5996 Msa1377300:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - tig0019900:6087-6106 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - tig0019900:6088-6107 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - tig0019900:6138-6157 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + tig0019900:6162-6181 Msa1377300:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + tig0019900:6527-6546 Msa1377300:three_prime_UTR 30.0%
!! TTTTAGAGAGTGGGATTTGA+AGG - tig0019900:2523-2542 None:intergenic 35.0%
!! GAGAGAAAGTTTTTAGAGAG+TGG - tig0019900:2533-2552 None:intergenic 35.0%
AAGTTTCCTAATATCACGTG+CGG - tig0019900:2742-2761 None:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG + tig0019900:2757-2776 Msa1377300:CDS 35.0%
ATGCAAAAAACGCTATGCTT+AGG - tig0019900:3238-3257 None:intergenic 35.0%
AGAATGATAAGGAGAAGACA+TGG + tig0019900:3259-3278 Msa1377300:intron 35.0%
TTGTATGCAAAGATCCAGAA+AGG - tig0019900:3369-3388 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + tig0019900:3385-3404 Msa1377300:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + tig0019900:3444-3463 Msa1377300:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + tig0019900:3445-3464 Msa1377300:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + tig0019900:3489-3508 Msa1377300:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - tig0019900:3493-3512 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + tig0019900:3493-3512 Msa1377300:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - tig0019900:3585-3604 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + tig0019900:3698-3717 Msa1377300:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + tig0019900:3763-3782 Msa1377300:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - tig0019900:3847-3866 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + tig0019900:3995-4014 Msa1377300:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + tig0019900:3998-4017 Msa1377300:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - tig0019900:4085-4104 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - tig0019900:4216-4235 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + tig0019900:4285-4304 Msa1377300:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - tig0019900:4293-4312 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + tig0019900:4308-4327 Msa1377300:intron 35.0%
AGTTCCTTGGAAAAAGAAAG+AGG + tig0019900:4321-4340 Msa1377300:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + tig0019900:4360-4379 Msa1377300:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + tig0019900:4397-4416 Msa1377300:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + tig0019900:4436-4455 Msa1377300:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG - tig0019900:4514-4533 None:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG - tig0019900:4519-4538 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - tig0019900:4574-4593 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + tig0019900:4585-4604 Msa1377300:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - tig0019900:4850-4869 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - tig0019900:4851-4870 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + tig0019900:4854-4873 Msa1377300:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + tig0019900:4861-4880 Msa1377300:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - tig0019900:4866-4885 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + tig0019900:4876-4895 Msa1377300:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + tig0019900:4931-4950 Msa1377300:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG - tig0019900:4980-4999 None:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG + tig0019900:5049-5068 Msa1377300:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + tig0019900:5054-5073 Msa1377300:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - tig0019900:5144-5163 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - tig0019900:5228-5247 None:intergenic 35.0%
TAAAATCGGAGTTCATTCTC+CGG - tig0019900:5263-5282 None:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG + tig0019900:5489-5508 Msa1377300:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - tig0019900:5525-5544 None:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG - tig0019900:5646-5665 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - tig0019900:5762-5781 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - tig0019900:5767-5786 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - tig0019900:5768-5787 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - tig0019900:5785-5804 None:intergenic 35.0%
! ATGACACCTTCTCTAAGAAT+CGG - tig0019900:6005-6024 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - tig0019900:6113-6132 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - tig0019900:6137-6156 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + tig0019900:6163-6182 Msa1377300:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + tig0019900:6205-6224 Msa1377300:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - tig0019900:6389-6408 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + tig0019900:6447-6466 Msa1377300:three_prime_UTR 35.0%
TTTCTCTCACCTCTTCACAA+TGG + tig0019900:2545-2564 Msa1377300:exon 40.0%
CTCCTCCTCCAATTATTCAT+GGG + tig0019900:2599-2618 Msa1377300:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - tig0019900:2604-2623 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + tig0019900:2603-2622 Msa1377300:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - tig0019900:2607-2626 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + tig0019900:2606-2625 Msa1377300:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + tig0019900:2607-2626 Msa1377300:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + tig0019900:2693-2712 Msa1377300:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - tig0019900:2858-2877 None:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + tig0019900:3497-3516 Msa1377300:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - tig0019900:3831-3850 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - tig0019900:4082-4101 None:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG + tig0019900:4295-4314 Msa1377300:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - tig0019900:4510-4529 None:intergenic 40.0%
AGATGAGAGGGTAGGTAATT+TGG - tig0019900:4562-4581 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - tig0019900:4575-4594 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - tig0019900:4589-4608 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - tig0019900:4702-4721 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + tig0019900:4705-4724 Msa1377300:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + tig0019900:4754-4773 Msa1377300:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - tig0019900:4765-4784 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - tig0019900:4806-4825 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + tig0019900:4875-4894 Msa1377300:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + tig0019900:4880-4899 Msa1377300:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - tig0019900:4932-4951 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + tig0019900:4930-4949 Msa1377300:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + tig0019900:4932-4951 Msa1377300:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - tig0019900:5058-5077 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - tig0019900:5076-5095 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + tig0019900:5199-5218 Msa1377300:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + tig0019900:5200-5219 Msa1377300:intron 40.0%
!! CATAACTGGTCTTATCTTGC+AGG + tig0019900:5463-5482 Msa1377300:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG - tig0019900:5645-5664 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - tig0019900:5647-5666 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + tig0019900:5648-5667 Msa1377300:CDS 40.0%
!! GCATTTTTCAGCTGTTTTCG+AGG - tig0019900:5805-5824 None:intergenic 40.0%
CATTCATCATAGTCCACCAA+GGG - tig0019900:5843-5862 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + tig0019900:6250-6269 Msa1377300:CDS 40.0%
AGGGTGGAGGTTATTTAGAG+AGG - tig0019900:2499-2518 None:intergenic 45.0%
GAGAGTGGGATTTGAAGGTA+GGG - tig0019900:2518-2537 None:intergenic 45.0%
AGAGAGTGGGATTTGAAGGT+AGG - tig0019900:2519-2538 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG - tig0019900:2598-2617 None:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG - tig0019900:2601-2620 None:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG + tig0019900:2598-2617 Msa1377300:CDS 45.0%
CCCTCCTTCCCATGAATAAT+TGG - tig0019900:2610-2629 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - tig0019900:2689-2708 None:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG + tig0019900:2733-2752 Msa1377300:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG + tig0019900:2763-2782 Msa1377300:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - tig0019900:3111-3130 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + tig0019900:3496-3515 Msa1377300:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + tig0019900:4070-4089 Msa1377300:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG + tig0019900:4378-4397 Msa1377300:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + tig0019900:4412-4431 Msa1377300:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - tig0019900:4416-4435 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + tig0019900:4457-4476 Msa1377300:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + tig0019900:4474-4493 Msa1377300:intron 45.0%
TGTTATGCCAAGCAATTGCG+AGG + tig0019900:4526-4545 Msa1377300:intron 45.0%
GTTATGCCAAGCAATTGCGA+GGG + tig0019900:4527-4546 Msa1377300:intron 45.0%
GAAAATCCCTCGCAATTGCT+TGG - tig0019900:4536-4555 None:intergenic 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - tig0019900:4570-4589 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - tig0019900:4732-4751 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - tig0019900:4800-4819 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + tig0019900:4884-4903 Msa1377300:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - tig0019900:5083-5102 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + tig0019900:5091-5110 Msa1377300:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - tig0019900:5097-5116 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - tig0019900:5098-5117 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - tig0019900:5101-5120 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + tig0019900:5101-5120 Msa1377300:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + tig0019900:5212-5231 Msa1377300:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - tig0019900:5216-5235 None:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG - tig0019900:5618-5637 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - tig0019900:5640-5659 None:intergenic 45.0%
CTGTGCTTTGATAGAACCCT+TGG + tig0019900:5824-5843 Msa1377300:CDS 45.0%
TGCTTTGATAGAACCCTTGG+TGG + tig0019900:5827-5846 Msa1377300:CDS 45.0%
GCATTCATCATAGTCCACCA+AGG - tig0019900:5844-5863 None:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG - tig0019900:5883-5902 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + tig0019900:5903-5922 Msa1377300:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + tig0019900:5919-5938 Msa1377300:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + tig0019900:5920-5939 Msa1377300:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - tig0019900:5935-5954 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + tig0019900:5933-5952 Msa1377300:CDS 45.0%
! AGGGAACCGATTCTTAGAGA+AGG + tig0019900:5996-6015 Msa1377300:CDS 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + tig0019900:6008-6027 Msa1377300:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + tig0019900:6032-6051 Msa1377300:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - tig0019900:6119-6138 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - tig0019900:6133-6152 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + tig0019900:6176-6195 Msa1377300:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + tig0019900:6220-6239 Msa1377300:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + tig0019900:6234-6253 Msa1377300:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + tig0019900:6249-6268 Msa1377300:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - tig0019900:6288-6307 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - tig0019900:6289-6308 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - tig0019900:6473-6492 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + tig0019900:6473-6492 Msa1377300:three_prime_UTR 45.0%
!! AAACAAAAAAAAAAATTAAT+TGG + tig0019900:2942-2961 Msa1377300:intron 5.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + tig0019900:3545-3564 Msa1377300:intron 5.0%
!!! CTTTATTTTTTATTTAAAAT+CGG - tig0019900:5277-5296 None:intergenic 5.0%
GAGAGAAGAGCAGTTGCTGT+TGG - tig0019900:2381-2400 None:intergenic 50.0%
CATATGGGGAGAGAGAGAGA+AGG - tig0019900:2419-2438 None:intergenic 50.0%
AGTGGGATTTGAAGGTAGGG+TGG - tig0019900:2515-2534 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - tig0019900:2557-2576 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - tig0019900:2576-2595 None:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + tig0019900:2786-2805 Msa1377300:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + tig0019900:2818-2837 Msa1377300:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + tig0019900:2836-2855 Msa1377300:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + tig0019900:3091-3110 Msa1377300:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + tig0019900:3097-3116 Msa1377300:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - tig0019900:3103-3122 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + tig0019900:4367-4386 Msa1377300:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + tig0019900:4411-4430 Msa1377300:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - tig0019900:4417-4436 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + tig0019900:4415-4434 Msa1377300:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + tig0019900:4712-4731 Msa1377300:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + tig0019900:4713-4732 Msa1377300:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - tig0019900:4842-4861 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - tig0019900:4846-4865 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + tig0019900:4883-4902 Msa1377300:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + tig0019900:4893-4912 Msa1377300:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG - tig0019900:5121-5140 None:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG + tig0019900:5125-5144 Msa1377300:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG + tig0019900:5126-5145 Msa1377300:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG - tig0019900:5135-5154 None:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + tig0019900:5211-5230 Msa1377300:intron 50.0%
GGCGAAAGCTGATGCAGTAA+TGG + tig0019900:5680-5699 Msa1377300:CDS 50.0%
! CAGAACTGCATTGACATCCG+AGG + tig0019900:5863-5882 Msa1377300:CDS 50.0%
! ACTGCATTGACATCCGAGGA+AGG + tig0019900:5867-5886 Msa1377300:CDS 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + tig0019900:5887-5906 Msa1377300:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + tig0019900:5890-5909 Msa1377300:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - tig0019900:6029-6048 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - tig0019900:6062-6081 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - tig0019900:6290-6309 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + tig0019900:6287-6306 Msa1377300:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - tig0019900:6301-6320 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - tig0019900:6302-6321 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - tig0019900:6468-6487 None:intergenic 50.0%
GGGATTTGAAGGTAGGGTGG+AGG - tig0019900:2512-2531 None:intergenic 55.0%
ATTGGAGGAGGAGGAGGAAC+AGG - tig0019900:2592-2611 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - tig0019900:2685-2704 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + tig0019900:2701-2720 Msa1377300:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - tig0019900:2830-2849 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + tig0019900:3626-3645 Msa1377300:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + tig0019900:4714-4733 Msa1377300:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - tig0019900:4720-4739 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - tig0019900:4843-4862 None:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG - tig0019900:5130-5149 None:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG + tig0019900:5129-5148 Msa1377300:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG - tig0019900:5134-5153 None:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG - tig0019900:5136-5155 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + tig0019900:5659-5678 Msa1377300:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - tig0019900:5677-5696 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - tig0019900:5678-5697 None:intergenic 55.0%
! GCATTGACATCCGAGGAAGG+TGG + tig0019900:5870-5889 Msa1377300:CDS 55.0%
TATGCCAGTCCAGGCCATTG+TGG + tig0019900:6456-6475 Msa1377300:three_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG - tig0019900:2585-2604 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+CGG - tig0019900:2678-2697 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - tig0019900:4717-4736 None:intergenic 60.0%
ACCTCCACAATGGCCTGGAC+TGG - tig0019900:6463-6482 None:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG - tig0019900:2589-2608 None:intergenic 65.0%
AGCACGACGGACGGCTAACG+GGG - tig0019900:2676-2695 None:intergenic 65.0%
GAGCACGACGGACGGCTAAC+GGG - tig0019900:2677-2696 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + tig0019900:2709-2728 Msa1377300:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - tig0019900:2723-2742 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + tig0019900:6459-6478 Msa1377300:three_prime_UTR 65.0%
CGGACGGCTAACGGGGTCTG+CGG - tig0019900:2669-2688 None:intergenic 70.0%
AAGCCGCAACTCCGGCACGC+CGG - tig0019900:2715-2734 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0019900 gene 2373 6608 2373 ID=Msa1377300;Name=Msa1377300
tig0019900 mRNA 2373 6608 2373 ID=Msa1377300-mRNA-1;Parent=Msa1377300;Name=Msa1377300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=191|1|1|1|1|1|2|271|395
tig0019900 exon 2373 2898 2373 ID=Msa1377300-mRNA-1:exon:5559;Parent=Msa1377300-mRNA-1
tig0019900 exon 5485 6608 5485 ID=Msa1377300-mRNA-1:exon:5560;Parent=Msa1377300-mRNA-1
tig0019900 five_prime_UTR 2373 2563 2373 ID=Msa1377300-mRNA-1:five_prime_utr;Parent=Msa1377300-mRNA-1
tig0019900 CDS 2564 2898 2564 ID=Msa1377300-mRNA-1:cds;Parent=Msa1377300-mRNA-1
tig0019900 CDS 5485 6337 5485 ID=Msa1377300-mRNA-1:cds;Parent=Msa1377300-mRNA-1
tig0019900 three_prime_UTR 6338 6608 6338 ID=Msa1377300-mRNA-1:three_prime_utr;Parent=Msa1377300-mRNA-1
Gene Sequence

>Msa1377300

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCGTTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCCTTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCGAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATTCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa1377300

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSLILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*