AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443950 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa1443950 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 4.16e-180 505
Msa1443950 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 6.60e-72 229
Msa1443950 MtrunA17_Chr6g0449461 35.913 323 190 8 48 360 9 324 1.00e-45 160
Msa1443950 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.84e-35 131
Msa1443950 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.05e-32 124
Msa1443950 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.32e-31 126
Msa1443950 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.76e-31 125
Msa1443950 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 8.21e-30 120
Msa1443950 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 4.50e-29 119
Msa1443950 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 3.03e-27 113
Msa1443950 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.39e-26 112
Msa1443950 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.46e-26 110
Msa1443950 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.72e-25 107
Msa1443950 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.08e-23 100
Msa1443950 MtrunA17_Chr2g0290151 29.464 224 123 5 124 317 147 365 3.74e-11 64.7
Msa1443950 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.43e-22 100
Msa1443950 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 4.23e-20 92.4
Msa1443950 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.62e-19 90.9
Msa1443950 MtrunA17_Chr5g0437411 28.977 176 121 3 124 298 406 578 1.74e-11 65.9
Msa1443950 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.25e-19 89.0
Msa1443950 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 6.77e-18 85.9
Msa1443950 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 2.86e-16 80.9
Msa1443950 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 6.05e-14 73.6
Msa1443950 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.82e-13 72.0
Msa1443950 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.15e-12 69.7
Msa1443950 MtrunA17_Chr7g0234671 27.407 270 180 9 58 318 188 450 1.26e-12 68.9
Msa1443950 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.63e-12 68.6
Msa1443950 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.79e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443950 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.26e-147 424
Msa1443950 AT4G12710.1 47.164 335 169 5 51 378 57 390 6.41e-80 251
Msa1443950 AT5G14510.1 36.760 321 188 8 48 360 9 322 1.71e-42 152
Msa1443950 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa1443950 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa1443950 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa1443950 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa1443950 AT2G23140.1 32.857 280 180 5 41 318 546 819 6.05e-35 137
Msa1443950 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.05e-33 127
Msa1443950 AT5G67340.1 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa1443950 AT5G67340.2 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa1443950 AT5G58680.1 34.586 266 164 7 58 319 80 339 3.37e-30 119
Msa1443950 AT3G54790.2 33.929 280 176 6 48 324 445 718 3.39e-30 123
Msa1443950 AT3G54790.3 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa1443950 AT3G54790.1 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa1443950 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.41e-27 114
Msa1443950 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.22e-26 110
Msa1443950 AT1G71020.1 33.451 284 182 6 40 320 342 621 2.86e-26 111
Msa1443950 AT4G31890.3 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1443950 AT4G31890.2 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1443950 AT4G31890.1 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa1443950 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.09e-25 108
Msa1443950 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.00e-24 105
Msa1443950 AT1G67530.2 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1443950 AT1G67530.1 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1443950 AT1G67530.4 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa1443950 AT4G16490.1 30.175 285 149 6 85 326 189 466 2.57e-23 101
Msa1443950 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa1443950 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa1443950 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.98e-21 95.9
Msa1443950 AT1G23030.1 27.402 281 160 5 81 320 333 610 1.61e-20 94.0
Msa1443950 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.15e-18 88.6
Msa1443950 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.47e-18 88.2
Msa1443950 AT5G42340.1 28.114 281 161 6 79 320 379 657 1.11e-16 82.4
Msa1443950 AT3G07360.5 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.3 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.9 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.6 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.2 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.8 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.10 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.7 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.4 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa1443950 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.05e-14 75.9
Msa1443950 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.69e-14 75.5
Msa1443950 AT1G60190.1 28.808 302 200 11 30 319 366 664 9.66e-13 70.5
Msa1443950 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.65e-12 69.3
Msa1443950 AT4G21350.1 24.907 269 191 5 56 321 111 371 7.46e-11 63.5

Find 128 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAGGCTAAGATTATT+AGG 0.196913 tig0030624:-5347 Msa1443950:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 tig0030624:-2108 Msa1443950:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 tig0030624:-2266 Msa1443950:intergenic
TTGGATTTGTTTCGAGAATA+AGG 0.252961 tig0030624:-5361 Msa1443950:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 tig0030624:-5236 Msa1443950:intergenic
AGAGAGAGAGTGGGATTTGA+AGG 0.287224 tig0030624:-2174 Msa1443950:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 tig0030624:+2392 Msa1443950:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 tig0030624:-5920 Msa1443950:intergenic
GACAAATACATAAAGTCATA+TGG 0.361269 tig0030624:-2086 Msa1443950:intergenic
ATCAACAAACCAATTATTAG+TGG 0.366264 tig0030624:+5227 Msa1443950:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 tig0030624:-5553 Msa1443950:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 tig0030624:+2257 Msa1443950:CDS
GAGCACGACGGACGGCTAAT+GGG 0.381866 tig0030624:-2333 Msa1443950:intergenic
AGAGCACGACGGACGGCTAA+TGG 0.382767 tig0030624:-2334 Msa1443950:intergenic
CTGGAATGACACCTTCTCTA+AGG 0.385946 tig0030624:-5628 Msa1443950:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.394977 tig0030624:+5629 Msa1443950:CDS
AGAGAGTGGGATTTGAAGGT+AGG 0.398737 tig0030624:-2170 Msa1443950:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 tig0030624:-5919 Msa1443950:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 tig0030624:-5706 Msa1443950:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 tig0030624:-5731 Msa1443950:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 tig0030624:-5737 Msa1443950:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 tig0030624:-2241 Msa1443950:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 tig0030624:+5597 Msa1443950:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 tig0030624:-2232 Msa1443950:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 tig0030624:-6007 Msa1443950:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 tig0030624:+2477 Msa1443950:CDS
GAGAGTGGGATTTGAAGGTA+GGG 0.446446 tig0030624:-2169 Msa1443950:intergenic
GTCAGAAAATCTAAATCTAC+AGG 0.455369 tig0030624:+5163 Msa1443950:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 tig0030624:-5908 Msa1443950:intergenic
CTGCATCAGCTTTCGCCTGT+GGG 0.462869 tig0030624:-5295 Msa1443950:intergenic
GAATAAGGCTAAGATTATTA+GGG 0.463501 tig0030624:-5346 Msa1443950:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 tig0030624:-5380 Msa1443950:intergenic
ACAAATACATAAAGTCATAT+GGG 0.466442 tig0030624:-2085 Msa1443950:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 tig0030624:+2352 Msa1443950:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 tig0030624:+5110 Msa1443950:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 tig0030624:+5233 Msa1443950:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 tig0030624:-5265 Msa1443950:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 tig0030624:+5540 Msa1443950:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.484494 tig0030624:+5448 Msa1443950:CDS
TGAATAATTGGAGGAGGAGG+AGG 0.484728 tig0030624:-2254 Msa1443950:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 tig0030624:+5653 Msa1443950:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 tig0030624:+2495 Msa1443950:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 tig0030624:-5755 Msa1443950:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 tig0030624:-6081 Msa1443950:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 tig0030624:+5826 Msa1443950:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 tig0030624:-5756 Msa1443950:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 tig0030624:+5524 Msa1443950:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 tig0030624:-5595 Msa1443950:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 tig0030624:+5783 Msa1443950:CDS
GGGATTTGAAGGTAGGGTGG+AGG 0.509242 tig0030624:-2163 Msa1443950:intergenic
ACTGCATCAGCTTTCGCCTG+TGG 0.510766 tig0030624:-5296 Msa1443950:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 tig0030624:+5908 Msa1443950:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 tig0030624:+6192 Msa1443950:three_prime_UTR
TCTGAGGCATTTACAGCAAA+GGG 0.516038 tig0030624:+5871 Msa1443950:CDS
AGTGGGATTTGAAGGTAGGG+TGG 0.523055 tig0030624:-2166 Msa1443950:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.523232 tig0030624:-5143 Msa1443950:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 tig0030624:-6086 Msa1443950:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 tig0030624:+2360 Msa1443950:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 tig0030624:-5501 Msa1443950:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 tig0030624:-2514 Msa1443950:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 tig0030624:-5705 Msa1443950:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 tig0030624:+5797 Msa1443950:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 tig0030624:-2150 Msa1443950:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 tig0030624:+5870 Msa1443950:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 tig0030624:-5647 Msa1443950:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 tig0030624:-5907 Msa1443950:intergenic
AGAGAGAGAGCAGTTGCTGT+TGG 0.538410 tig0030624:-2032 Msa1443950:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 tig0030624:-5264 Msa1443950:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 tig0030624:-2257 Msa1443950:intergenic
CTGTGCTTTGATAGAACCCT+TGG 0.544422 tig0030624:+5445 Msa1443950:CDS
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 tig0030624:+2368 Msa1443950:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 tig0030624:+2258 Msa1443950:CDS
GGCGAAAGCTGATGCAGTAA+TGG 0.549627 tig0030624:+5301 Msa1443950:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 tig0030624:-2263 Msa1443950:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 tig0030624:+2265 Msa1443950:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 tig0030624:+5554 Msa1443950:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 tig0030624:-2379 Msa1443950:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 tig0030624:-5751 Msa1443950:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 tig0030624:+2262 Msa1443950:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 tig0030624:-5219 Msa1443950:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 tig0030624:-2292 Msa1443950:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 tig0030624:+2266 Msa1443950:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 tig0030624:+6068 Msa1443950:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 tig0030624:+6094 Msa1443950:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 tig0030624:+5103 Msa1443950:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 tig0030624:-2296 Msa1443950:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 tig0030624:+5508 Msa1443950:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 tig0030624:+6136 Msa1443950:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 tig0030624:-5263 Msa1443950:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 tig0030624:+5280 Msa1443950:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 tig0030624:-5385 Msa1443950:intergenic
AGCACGACGGACGGCTAATG+GGG 0.582077 tig0030624:-2332 Msa1443950:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 tig0030624:-2260 Msa1443950:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 tig0030624:-2084 Msa1443950:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 tig0030624:-5386 Msa1443950:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 tig0030624:-2486 Msa1443950:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 tig0030624:+6077 Msa1443950:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 tig0030624:-5258 Msa1443950:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 tig0030624:-2341 Msa1443950:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 tig0030624:+2445 Msa1443950:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 tig0030624:+2422 Msa1443950:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 tig0030624:+5782 Msa1443950:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 tig0030624:+6080 Msa1443950:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 tig0030624:-2371 Msa1443950:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 tig0030624:+5269 Msa1443950:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 tig0030624:+2204 Msa1443950:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 tig0030624:+5541 Msa1443950:CDS
ATGACACCTTCTCTAAGGAT+CGG 0.626935 tig0030624:-5623 Msa1443950:intergenic
AGCTATAGGGAGATCACTTG+GGG 0.628255 tig0030624:-5906 Msa1443950:intergenic
ACTGCATTGACATCCGAGGA+AGG 0.632924 tig0030624:+5488 Msa1443950:CDS
CATTCATCATAGTCCACCAA+GGG 0.639137 tig0030624:-5461 Msa1443950:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 tig0030624:+5511 Msa1443950:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 tig0030624:+5106 Msa1443950:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 tig0030624:-2398 Msa1443950:intergenic
AGGGAACCGATCCTTAGAGA+AGG 0.656837 tig0030624:+5617 Msa1443950:CDS
AAGTGATCGATGTAAATACA+GGG 0.660329 tig0030624:+5598 Msa1443950:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 tig0030624:+5784 Msa1443950:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 tig0030624:+5841 Msa1443950:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 tig0030624:+5855 Msa1443950:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 tig0030624:-5462 Msa1443950:intergenic
CAGAACTGCATTGACATCCG+AGG 0.673802 tig0030624:+5484 Msa1443950:CDS
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 tig0030624:-2213 Msa1443950:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 tig0030624:-6091 Msa1443950:intergenic
AAATACATAAAGTCATATGG+GGG 0.701924 tig0030624:-2083 Msa1443950:intergenic
CGGACGGCTAATGGGGTCTG+CGG 0.717038 tig0030624:-2325 Msa1443950:intergenic
GCATTGACATCCGAGGAAGG+TGG 0.729651 tig0030624:+5491 Msa1443950:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 tig0030624:-2345 Msa1443950:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 tig0030624:+2416 Msa1443950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAACAAAAAAAAAATTAAT+TGG + tig0030624:2600-2619 Msa1443950:intron 10.0%
!!! CTTTATTTTTTATTTAAAGT+CGG - tig0030624:4898-4917 Msa1443950:intergenic 10.0%
!! AAAATTTCTATAGAAAAAAA+AGG + tig0030624:6027-6046 Msa1443950:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + tig0030624:6028-6047 Msa1443950:three_prime_UTR 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + tig0030624:2631-2650 Msa1443950:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + tig0030624:3091-3110 Msa1443950:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + tig0030624:3460-3479 Msa1443950:intron 15.0%
!!! GATAAACTTTTTTTTTTTAG+AGG - tig0030624:3626-3645 Msa1443950:intergenic 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + tig0030624:3630-3649 Msa1443950:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - tig0030624:4983-5002 Msa1443950:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG - tig0030624:2088-2107 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - tig0030624:2111-2130 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - tig0030624:2578-2597 Msa1443950:intergenic 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - tig0030624:3136-3155 Msa1443950:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - tig0030624:3137-3156 Msa1443950:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + tig0030624:3183-3202 Msa1443950:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + tig0030624:3270-3289 Msa1443950:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + tig0030624:3271-3290 Msa1443950:intron 20.0%
!!! CTTTTTTTTTTTAGAGGAAT+TGG - tig0030624:3620-3639 Msa1443950:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG - tig0030624:3699-3718 Msa1443950:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + tig0030624:3862-3881 Msa1443950:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + tig0030624:3863-3882 Msa1443950:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + tig0030624:4920-4939 Msa1443950:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG + tig0030624:5070-5089 Msa1443950:intron 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG + tig0030624:5980-5999 Msa1443950:three_prime_UTR 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG + tig0030624:5993-6012 Msa1443950:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + tig0030624:6036-6055 Msa1443950:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + tig0030624:6037-6056 Msa1443950:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + tig0030624:6192-6211 Msa1443950:three_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG - tig0030624:2086-2105 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG - tig0030624:2087-2106 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - tig0030624:2089-2108 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - tig0030624:2299-2318 Msa1443950:intergenic 25.0%
!! TCTTTTTGCATAAGAATGTA+AGG + tig0030624:2912-2931 Msa1443950:intron 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + tig0030624:3276-3295 Msa1443950:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - tig0030624:3329-3348 Msa1443950:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + tig0030624:3572-3591 Msa1443950:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG - tig0030624:3714-3733 Msa1443950:intergenic 25.0%
! TAGGAAAAAAAATACAAAGG+TGG - tig0030624:3817-3836 Msa1443950:intergenic 25.0%
! GAGTAGGAAAAAAAATACAA+AGG - tig0030624:3820-3839 Msa1443950:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + tig0030624:3870-3889 Msa1443950:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + tig0030624:3965-3984 Msa1443950:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + tig0030624:3966-3985 Msa1443950:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - tig0030624:4233-4252 Msa1443950:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - tig0030624:4390-4409 Msa1443950:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - tig0030624:4572-4591 Msa1443950:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + tig0030624:4571-4590 Msa1443950:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + tig0030624:4648-4667 Msa1443950:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + tig0030624:4649-4668 Msa1443950:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG + tig0030624:4862-4881 Msa1443950:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - tig0030624:5009-5028 Msa1443950:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - tig0030624:5033-5052 Msa1443950:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + tig0030624:5103-5122 Msa1443950:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + tig0030624:5106-5125 Msa1443950:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + tig0030624:5227-5246 Msa1443950:CDS 25.0%
! GAATAAGGCTAAGATTATTA+GGG - tig0030624:5349-5368 Msa1443950:intergenic 25.0%
! AGAATAAGGCTAAGATTATT+AGG - tig0030624:5350-5369 Msa1443950:intergenic 25.0%
! AACATCATATCTCAAATTGA+CGG + tig0030624:5782-5801 Msa1443950:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + tig0030624:5949-5968 Msa1443950:exon 25.0%
! CAAATGGAAAACCAAAAATA+AGG - tig0030624:5994-6013 Msa1443950:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG + tig0030624:5992-6011 Msa1443950:three_prime_UTR 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG + tig0030624:5994-6013 Msa1443950:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + tig0030624:6136-6155 Msa1443950:three_prime_UTR 25.0%
! TCTATAATAATTGTGTCGGT+AGG - tig0030624:2295-2314 Msa1443950:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG - tig0030624:2545-2564 Msa1443950:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + tig0030624:2637-2656 Msa1443950:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + tig0030624:2702-2721 Msa1443950:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + tig0030624:2703-2722 Msa1443950:intron 30.0%
AAAGAAAAAACGCTATGCTT+AGG - tig0030624:2897-2916 Msa1443950:intergenic 30.0%
TTGCATAATCAATTCCTTTC+TGG + tig0030624:3016-3035 Msa1443950:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + tig0030624:3043-3062 Msa1443950:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - tig0030624:3265-3284 Msa1443950:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + tig0030624:3275-3294 Msa1443950:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + tig0030624:3277-3296 Msa1443950:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - tig0030624:3355-3374 Msa1443950:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + tig0030624:3355-3374 Msa1443950:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - tig0030624:3438-3457 Msa1443950:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + tig0030624:3465-3484 Msa1443950:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - tig0030624:3469-3488 Msa1443950:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + tig0030624:3637-3656 Msa1443950:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - tig0030624:3648-3667 Msa1443950:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + tig0030624:3648-3667 Msa1443950:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG - tig0030624:3751-3770 Msa1443950:intergenic 30.0%
GAAAAAAAATACAAAGGTGG+TGG - tig0030624:3814-3833 Msa1443950:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + tig0030624:3838-3857 Msa1443950:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG - tig0030624:3948-3967 Msa1443950:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + tig0030624:4058-4077 Msa1443950:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - tig0030624:4089-4108 Msa1443950:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG - tig0030624:4134-4153 Msa1443950:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG - tig0030624:4139-4158 Msa1443950:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + tig0030624:4227-4246 Msa1443950:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + tig0030624:4280-4299 Msa1443950:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - tig0030624:4442-4461 Msa1443950:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - tig0030624:4486-4505 Msa1443950:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - tig0030624:4811-4830 Msa1443950:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + tig0030624:4811-4830 Msa1443950:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + tig0030624:4940-4959 Msa1443950:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG - tig0030624:5160-5179 Msa1443950:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG + tig0030624:5163-5182 Msa1443950:CDS 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - tig0030624:5222-5241 Msa1443950:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + tig0030624:5233-5252 Msa1443950:CDS 30.0%
! TTGGATTTGTTTCGAGAATA+AGG - tig0030624:5364-5383 Msa1443950:intergenic 30.0%
TGTATTTACATCGATCACTT+TGG - tig0030624:5598-5617 Msa1443950:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + tig0030624:5597-5616 Msa1443950:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + tig0030624:5598-5617 Msa1443950:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - tig0030624:5708-5727 Msa1443950:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - tig0030624:5709-5728 Msa1443950:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - tig0030624:5759-5778 Msa1443950:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + tig0030624:5783-5802 Msa1443950:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + tig0030624:6148-6167 Msa1443950:three_prime_UTR 30.0%
!!! AAGTTTTAGAGAGAGAGAGT+GGG - tig0030624:2186-2205 None:intergenic 35.0%
!!! AAAGTTTTAGAGAGAGAGAG+TGG - tig0030624:2187-2206 None:intergenic 35.0%
AAGTTTCCTAATATCACGTG+CGG - tig0030624:2401-2420 Msa1443950:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG + tig0030624:2416-2435 Msa1443950:CDS 35.0%
AAGAATGTAAGGAGAAGACA+TGG + tig0030624:2923-2942 Msa1443950:intron 35.0%
TTGTATGCAAAGATCCAGAA+AGG - tig0030624:3033-3052 Msa1443950:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + tig0030624:3049-3068 Msa1443950:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + tig0030624:3108-3127 Msa1443950:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + tig0030624:3109-3128 Msa1443950:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + tig0030624:3153-3172 Msa1443950:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - tig0030624:3157-3176 Msa1443950:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + tig0030624:3157-3176 Msa1443950:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - tig0030624:3249-3268 Msa1443950:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + tig0030624:3362-3381 Msa1443950:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + tig0030624:3424-3443 Msa1443950:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - tig0030624:3508-3527 Msa1443950:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + tig0030624:3657-3676 Msa1443950:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + tig0030624:3660-3679 Msa1443950:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - tig0030624:3747-3766 Msa1443950:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - tig0030624:3836-3855 Msa1443950:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + tig0030624:3905-3924 Msa1443950:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - tig0030624:3913-3932 Msa1443950:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + tig0030624:3928-3947 Msa1443950:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG + tig0030624:3942-3961 Msa1443950:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + tig0030624:3981-4000 Msa1443950:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + tig0030624:4018-4037 Msa1443950:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + tig0030624:4057-4076 Msa1443950:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG - tig0030624:4135-4154 Msa1443950:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG - tig0030624:4140-4159 Msa1443950:intergenic 35.0%
TTATGCCAAGCAATTGTGAA+GGG + tig0030624:4149-4168 Msa1443950:intron 35.0%
AAAATCCCTTCACAATTGCT+TGG - tig0030624:4157-4176 Msa1443950:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - tig0030624:4196-4215 Msa1443950:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + tig0030624:4207-4226 Msa1443950:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - tig0030624:4471-4490 Msa1443950:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - tig0030624:4472-4491 Msa1443950:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + tig0030624:4475-4494 Msa1443950:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + tig0030624:4482-4501 Msa1443950:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - tig0030624:4487-4506 Msa1443950:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + tig0030624:4497-4516 Msa1443950:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + tig0030624:4552-4571 Msa1443950:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG - tig0030624:4601-4620 Msa1443950:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG + tig0030624:4670-4689 Msa1443950:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + tig0030624:4675-4694 Msa1443950:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - tig0030624:4765-4784 Msa1443950:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - tig0030624:4849-4868 Msa1443950:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG + tig0030624:5110-5129 Msa1443950:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - tig0030624:5146-5165 Msa1443950:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG - tig0030624:5267-5286 Msa1443950:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - tig0030624:5383-5402 Msa1443950:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - tig0030624:5388-5407 Msa1443950:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - tig0030624:5389-5408 Msa1443950:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - tig0030624:5406-5425 Msa1443950:intergenic 35.0%
!!! GCATTTTTCAGCTGTTTTTG+AGG - tig0030624:5426-5445 Msa1443950:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - tig0030624:5734-5753 Msa1443950:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - tig0030624:5758-5777 Msa1443950:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + tig0030624:5784-5803 Msa1443950:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + tig0030624:5826-5845 Msa1443950:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - tig0030624:6010-6029 Msa1443950:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + tig0030624:6068-6087 Msa1443950:three_prime_UTR 35.0%
TTTCTCTCACCTCTTCACAA+TGG + tig0030624:2204-2223 Msa1443950:exon 40.0%
CTCCTCCTCCAATTATTCAT+GGG + tig0030624:2258-2277 Msa1443950:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - tig0030624:2263-2282 Msa1443950:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + tig0030624:2262-2281 Msa1443950:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - tig0030624:2266-2285 Msa1443950:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + tig0030624:2265-2284 Msa1443950:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + tig0030624:2266-2285 Msa1443950:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + tig0030624:2352-2371 Msa1443950:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - tig0030624:2517-2536 Msa1443950:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + tig0030624:3161-3180 Msa1443950:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - tig0030624:3492-3511 Msa1443950:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - tig0030624:3744-3763 Msa1443950:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG + tig0030624:3915-3934 Msa1443950:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - tig0030624:4131-4150 Msa1443950:intergenic 40.0%
GTTATGCCAAGCAATTGTGA+AGG + tig0030624:4148-4167 Msa1443950:intron 40.0%
AGATGAGAGGGTAGGTAATT+TGG - tig0030624:4184-4203 Msa1443950:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - tig0030624:4197-4216 Msa1443950:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - tig0030624:4211-4230 Msa1443950:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - tig0030624:4323-4342 Msa1443950:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + tig0030624:4326-4345 Msa1443950:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + tig0030624:4375-4394 Msa1443950:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - tig0030624:4386-4405 Msa1443950:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - tig0030624:4427-4446 Msa1443950:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + tig0030624:4496-4515 Msa1443950:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + tig0030624:4501-4520 Msa1443950:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - tig0030624:4553-4572 Msa1443950:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + tig0030624:4551-4570 Msa1443950:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + tig0030624:4553-4572 Msa1443950:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - tig0030624:4679-4698 Msa1443950:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - tig0030624:4697-4716 Msa1443950:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + tig0030624:4820-4839 Msa1443950:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + tig0030624:4821-4840 Msa1443950:intron 40.0%
TAAAGTCGGAGTTCATTCTC+CGG - tig0030624:4884-4903 Msa1443950:intergenic 40.0%
!! CATAACTGGTCTTATCTTGC+AGG + tig0030624:5084-5103 Msa1443950:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG - tig0030624:5266-5285 Msa1443950:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - tig0030624:5268-5287 Msa1443950:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + tig0030624:5269-5288 Msa1443950:CDS 40.0%
CATTCATCATAGTCCACCAA+GGG - tig0030624:5464-5483 Msa1443950:intergenic 40.0%
! ATGACACCTTCTCTAAGGAT+CGG - tig0030624:5626-5645 Msa1443950:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + tig0030624:5871-5890 Msa1443950:CDS 40.0%
AGGGTGGAGGTTATTTAGAG+AGG - tig0030624:2153-2172 None:intergenic 45.0%
GAGAGTGGGATTTGAAGGTA+GGG - tig0030624:2172-2191 None:intergenic 45.0%
AGAGAGTGGGATTTGAAGGT+AGG - tig0030624:2173-2192 None:intergenic 45.0%
AGAGAGAGAGTGGGATTTGA+AGG - tig0030624:2177-2196 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG - tig0030624:2257-2276 Msa1443950:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG - tig0030624:2260-2279 Msa1443950:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG + tig0030624:2257-2276 Msa1443950:CDS 45.0%
CCCTCCTTCCCATGAATAAT+TGG - tig0030624:2269-2288 Msa1443950:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - tig0030624:2348-2367 Msa1443950:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG + tig0030624:2392-2411 Msa1443950:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG + tig0030624:2422-2441 Msa1443950:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - tig0030624:2770-2789 Msa1443950:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + tig0030624:3160-3179 Msa1443950:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + tig0030624:3732-3751 Msa1443950:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG + tig0030624:3999-4018 Msa1443950:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + tig0030624:4033-4052 Msa1443950:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - tig0030624:4037-4056 Msa1443950:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + tig0030624:4078-4097 Msa1443950:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + tig0030624:4095-4114 Msa1443950:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - tig0030624:4192-4211 Msa1443950:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - tig0030624:4353-4372 Msa1443950:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - tig0030624:4421-4440 Msa1443950:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + tig0030624:4505-4524 Msa1443950:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - tig0030624:4704-4723 Msa1443950:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + tig0030624:4712-4731 Msa1443950:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - tig0030624:4718-4737 Msa1443950:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - tig0030624:4719-4738 Msa1443950:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - tig0030624:4722-4741 Msa1443950:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + tig0030624:4722-4741 Msa1443950:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + tig0030624:4833-4852 Msa1443950:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - tig0030624:4837-4856 Msa1443950:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG - tig0030624:5239-5258 Msa1443950:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - tig0030624:5261-5280 Msa1443950:intergenic 45.0%
CTGTGCTTTGATAGAACCCT+TGG + tig0030624:5445-5464 Msa1443950:CDS 45.0%
TGCTTTGATAGAACCCTTGG+TGG + tig0030624:5448-5467 Msa1443950:CDS 45.0%
GCATTCATCATAGTCCACCA+AGG - tig0030624:5465-5484 Msa1443950:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG - tig0030624:5504-5523 Msa1443950:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + tig0030624:5524-5543 Msa1443950:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + tig0030624:5540-5559 Msa1443950:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + tig0030624:5541-5560 Msa1443950:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - tig0030624:5556-5575 Msa1443950:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + tig0030624:5554-5573 Msa1443950:CDS 45.0%
CTGGAATGACACCTTCTCTA+AGG - tig0030624:5631-5650 Msa1443950:intergenic 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + tig0030624:5629-5648 Msa1443950:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + tig0030624:5653-5672 Msa1443950:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - tig0030624:5740-5759 Msa1443950:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - tig0030624:5754-5773 Msa1443950:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + tig0030624:5797-5816 Msa1443950:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + tig0030624:5841-5860 Msa1443950:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + tig0030624:5855-5874 Msa1443950:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + tig0030624:5870-5889 Msa1443950:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - tig0030624:5909-5928 Msa1443950:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - tig0030624:5910-5929 Msa1443950:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - tig0030624:6094-6113 Msa1443950:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + tig0030624:6094-6113 Msa1443950:three_prime_UTR 45.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + tig0030624:3209-3228 Msa1443950:intron 5.0%
AGAGAGAGAGCAGTTGCTGT+TGG - tig0030624:2035-2054 None:intergenic 50.0%
TCATATGGGGGAGAGAGAGA+AGG - tig0030624:2074-2093 None:intergenic 50.0%
AGTGGGATTTGAAGGTAGGG+TGG - tig0030624:2169-2188 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - tig0030624:2216-2235 Msa1443950:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - tig0030624:2235-2254 Msa1443950:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + tig0030624:2445-2464 Msa1443950:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + tig0030624:2477-2496 Msa1443950:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + tig0030624:2495-2514 Msa1443950:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + tig0030624:2750-2769 Msa1443950:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + tig0030624:2756-2775 Msa1443950:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - tig0030624:2762-2781 Msa1443950:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + tig0030624:3988-4007 Msa1443950:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + tig0030624:4032-4051 Msa1443950:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - tig0030624:4038-4057 Msa1443950:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + tig0030624:4036-4055 Msa1443950:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + tig0030624:4333-4352 Msa1443950:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + tig0030624:4334-4353 Msa1443950:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - tig0030624:4463-4482 Msa1443950:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - tig0030624:4467-4486 Msa1443950:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + tig0030624:4504-4523 Msa1443950:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + tig0030624:4514-4533 Msa1443950:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG - tig0030624:4742-4761 Msa1443950:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG + tig0030624:4746-4765 Msa1443950:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG + tig0030624:4747-4766 Msa1443950:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG - tig0030624:4756-4775 Msa1443950:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + tig0030624:4832-4851 Msa1443950:intron 50.0%
GGCGAAAGCTGATGCAGTAA+TGG + tig0030624:5301-5320 Msa1443950:CDS 50.0%
! CAGAACTGCATTGACATCCG+AGG + tig0030624:5484-5503 Msa1443950:CDS 50.0%
! ACTGCATTGACATCCGAGGA+AGG + tig0030624:5488-5507 Msa1443950:CDS 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + tig0030624:5508-5527 Msa1443950:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + tig0030624:5511-5530 Msa1443950:CDS 50.0%
AGGGAACCGATCCTTAGAGA+AGG + tig0030624:5617-5636 Msa1443950:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - tig0030624:5650-5669 Msa1443950:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - tig0030624:5683-5702 Msa1443950:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - tig0030624:5911-5930 Msa1443950:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + tig0030624:5908-5927 Msa1443950:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - tig0030624:5922-5941 Msa1443950:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - tig0030624:5923-5942 Msa1443950:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - tig0030624:6089-6108 Msa1443950:intergenic 50.0%
GGGATTTGAAGGTAGGGTGG+AGG - tig0030624:2166-2185 None:intergenic 55.0%
ATTGGAGGAGGAGGAGGAAC+AGG - tig0030624:2251-2270 Msa1443950:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - tig0030624:2344-2363 Msa1443950:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + tig0030624:2360-2379 Msa1443950:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - tig0030624:2489-2508 Msa1443950:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + tig0030624:3290-3309 Msa1443950:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + tig0030624:4335-4354 Msa1443950:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - tig0030624:4341-4360 Msa1443950:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - tig0030624:4464-4483 Msa1443950:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG - tig0030624:4751-4770 Msa1443950:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG + tig0030624:4750-4769 Msa1443950:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG - tig0030624:4755-4774 Msa1443950:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG - tig0030624:4757-4776 Msa1443950:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + tig0030624:5280-5299 Msa1443950:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - tig0030624:5298-5317 Msa1443950:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - tig0030624:5299-5318 Msa1443950:intergenic 55.0%
! GCATTGACATCCGAGGAAGG+TGG + tig0030624:5491-5510 Msa1443950:CDS 55.0%
TATGCCAGTCCAGGCCATTG+TGG + tig0030624:6077-6096 Msa1443950:three_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG - tig0030624:2244-2263 Msa1443950:intergenic 60.0%
AGCACGACGGACGGCTAATG+GGG - tig0030624:2335-2354 Msa1443950:intergenic 60.0%
GAGCACGACGGACGGCTAAT+GGG - tig0030624:2336-2355 Msa1443950:intergenic 60.0%
AGAGCACGACGGACGGCTAA+TGG - tig0030624:2337-2356 Msa1443950:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - tig0030624:4338-4357 Msa1443950:intergenic 60.0%
ACCTCCACAATGGCCTGGAC+TGG - tig0030624:6084-6103 Msa1443950:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG - tig0030624:2248-2267 Msa1443950:intergenic 65.0%
CGGACGGCTAATGGGGTCTG+CGG - tig0030624:2328-2347 Msa1443950:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + tig0030624:2368-2387 Msa1443950:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - tig0030624:2382-2401 Msa1443950:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + tig0030624:6080-6099 Msa1443950:three_prime_UTR 65.0%
AAGCCGCAACTCCGGCACGC+CGG - tig0030624:2374-2393 Msa1443950:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0030624 gene 2027 6229 2027 ID=Msa1443950;Name=Msa1443950
tig0030624 mRNA 2027 6229 2027 ID=Msa1443950-mRNA-1;Parent=Msa1443950;Name=Msa1443950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=196|1|1|1|1|1|2|271|395
tig0030624 exon 2027 2557 2027 ID=Msa1443950-mRNA-1:exon:14191;Parent=Msa1443950-mRNA-1
tig0030624 exon 5106 6229 5106 ID=Msa1443950-mRNA-1:exon:14192;Parent=Msa1443950-mRNA-1
tig0030624 five_prime_UTR 2027 2222 2027 ID=Msa1443950-mRNA-1:five_prime_utr;Parent=Msa1443950-mRNA-1
tig0030624 CDS 2223 2557 2223 ID=Msa1443950-mRNA-1:cds;Parent=Msa1443950-mRNA-1
tig0030624 CDS 5106 5958 5106 ID=Msa1443950-mRNA-1:cds;Parent=Msa1443950-mRNA-1
tig0030624 three_prime_UTR 5959 6229 5959 ID=Msa1443950-mRNA-1:three_prime_utr;Parent=Msa1443950-mRNA-1
Gene Sequence

>Msa1443950

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCATTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCCTTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATCCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa1443950

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSLILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*