AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0461980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461980 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa0461980 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 4.16e-180 505
Msa0461980 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 6.60e-72 229
Msa0461980 MtrunA17_Chr6g0449461 35.913 323 190 8 48 360 9 324 1.00e-45 160
Msa0461980 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.84e-35 131
Msa0461980 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.05e-32 124
Msa0461980 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.32e-31 126
Msa0461980 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.76e-31 125
Msa0461980 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 8.21e-30 120
Msa0461980 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 4.50e-29 119
Msa0461980 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 3.03e-27 113
Msa0461980 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.39e-26 112
Msa0461980 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.46e-26 110
Msa0461980 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.72e-25 107
Msa0461980 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.08e-23 100
Msa0461980 MtrunA17_Chr2g0290151 29.464 224 123 5 124 317 147 365 3.74e-11 64.7
Msa0461980 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.43e-22 100
Msa0461980 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 4.23e-20 92.4
Msa0461980 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.62e-19 90.9
Msa0461980 MtrunA17_Chr5g0437411 28.977 176 121 3 124 298 406 578 1.74e-11 65.9
Msa0461980 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.25e-19 89.0
Msa0461980 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 6.77e-18 85.9
Msa0461980 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 2.86e-16 80.9
Msa0461980 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 6.05e-14 73.6
Msa0461980 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.82e-13 72.0
Msa0461980 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.15e-12 69.7
Msa0461980 MtrunA17_Chr7g0234671 27.407 270 180 9 58 318 188 450 1.26e-12 68.9
Msa0461980 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.63e-12 68.6
Msa0461980 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.79e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461980 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.26e-147 424
Msa0461980 AT4G12710.1 47.164 335 169 5 51 378 57 390 6.41e-80 251
Msa0461980 AT5G14510.1 36.760 321 188 8 48 360 9 322 1.71e-42 152
Msa0461980 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0461980 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0461980 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0461980 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0461980 AT2G23140.1 32.857 280 180 5 41 318 546 819 6.05e-35 137
Msa0461980 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.05e-33 127
Msa0461980 AT5G67340.1 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0461980 AT5G67340.2 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0461980 AT5G58680.1 34.586 266 164 7 58 319 80 339 3.37e-30 119
Msa0461980 AT3G54790.2 33.929 280 176 6 48 324 445 718 3.39e-30 123
Msa0461980 AT3G54790.3 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0461980 AT3G54790.1 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0461980 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.41e-27 114
Msa0461980 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.22e-26 110
Msa0461980 AT1G71020.1 33.451 284 182 6 40 320 342 621 2.86e-26 111
Msa0461980 AT4G31890.3 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0461980 AT4G31890.2 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0461980 AT4G31890.1 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0461980 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.09e-25 108
Msa0461980 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.00e-24 105
Msa0461980 AT1G67530.2 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0461980 AT1G67530.1 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0461980 AT1G67530.4 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0461980 AT4G16490.1 30.175 285 149 6 85 326 189 466 2.57e-23 101
Msa0461980 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0461980 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0461980 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.98e-21 95.9
Msa0461980 AT1G23030.1 27.402 281 160 5 81 320 333 610 1.61e-20 94.0
Msa0461980 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.15e-18 88.6
Msa0461980 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.47e-18 88.2
Msa0461980 AT5G42340.1 28.114 281 161 6 79 320 379 657 1.11e-16 82.4
Msa0461980 AT3G07360.5 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.3 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.9 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.6 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.2 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.8 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.10 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.7 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.4 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0461980 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.05e-14 75.9
Msa0461980 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.69e-14 75.5
Msa0461980 AT1G60190.1 28.808 302 200 11 30 319 366 664 9.66e-13 70.5
Msa0461980 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.65e-12 69.3
Msa0461980 AT4G21350.1 24.907 269 191 5 56 321 111 371 7.46e-11 63.5

Find 129 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAGGCTAAGATTATT+AGG 0.196913 3_3:-60702535 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 3_3:-60699286 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 3_3:-60699444 None:intergenic
TTGGATTTGTTTCGAGAATA+AGG 0.252961 3_3:-60702549 None:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 3_3:-60702424 None:intergenic
AGAGAGAGAGTGGGATTTGA+AGG 0.287224 3_3:-60699352 None:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 3_3:+60699570 Msa0461980:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 3_3:-60703108 None:intergenic
GACAAATACATAAAGTCATA+TGG 0.361269 3_3:-60699264 None:intergenic
ATCAACAAACCAATTATTAG+TGG 0.366264 3_3:+60702415 Msa0461980:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 3_3:-60702741 None:intergenic
GAGCACGACGGACGGCTAAT+GGG 0.381866 3_3:-60699511 None:intergenic
AGAGCACGACGGACGGCTAA+TGG 0.382767 3_3:-60699512 None:intergenic
CTGGAATGACACCTTCTCTA+AGG 0.385946 3_3:-60702816 None:intergenic
ATTGGAGGAGGATGAGGAAC+AGG 0.389002 3_3:-60699426 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.394977 3_3:+60702817 Msa0461980:CDS
AGAGAGTGGGATTTGAAGGT+AGG 0.398737 3_3:-60699348 None:intergenic
CATCCTCCTCCAATTATTCA+TGG 0.401271 3_3:+60699435 Msa0461980:CDS
CAGAAGCACAGCCAGCTATA+GGG 0.409997 3_3:-60703107 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 3_3:-60702894 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 3_3:-60702919 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 3_3:-60702925 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 3_3:+60702785 Msa0461980:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.438876 3_3:-60699410 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 3_3:-60703195 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 3_3:+60699655 Msa0461980:CDS
GAGAGTGGGATTTGAAGGTA+GGG 0.446446 3_3:-60699347 None:intergenic
GAGGATGAGGAACAGGAGGA+AGG 0.453661 3_3:-60699419 None:intergenic
GTCAGAAAATCTAAATCTAC+AGG 0.455369 3_3:+60702351 Msa0461980:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 3_3:-60703096 None:intergenic
TGAATAATTGGAGGAGGATG+AGG 0.459752 3_3:-60699432 None:intergenic
CTGCATCAGCTTTCGCCTGT+GGG 0.462869 3_3:-60702483 None:intergenic
GAATAAGGCTAAGATTATTA+GGG 0.463501 3_3:-60702534 None:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 3_3:-60702568 None:intergenic
ACAAATACATAAAGTCATAT+GGG 0.466442 3_3:-60699263 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 3_3:+60699530 Msa0461980:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 3_3:+60702298 Msa0461980:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 3_3:+60702421 Msa0461980:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 3_3:-60702453 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 3_3:+60702728 Msa0461980:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.484494 3_3:+60702636 Msa0461980:CDS
CTACTTGAGCTCACTGTACA+AGG 0.484972 3_3:+60702841 Msa0461980:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 3_3:+60699673 Msa0461980:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 3_3:-60702943 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 3_3:-60703269 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 3_3:+60703014 Msa0461980:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 3_3:-60702944 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 3_3:+60702712 Msa0461980:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 3_3:-60702783 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 3_3:+60702971 Msa0461980:CDS
GGGATTTGAAGGTAGGGTGG+AGG 0.509242 3_3:-60699341 None:intergenic
ACTGCATCAGCTTTCGCCTG+TGG 0.510766 3_3:-60702484 None:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 3_3:+60703096 Msa0461980:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 3_3:+60703380 Msa0461980:three_prime_UTR
TCTGAGGCATTTACAGCAAA+GGG 0.516038 3_3:+60703059 Msa0461980:CDS
AGTGGGATTTGAAGGTAGGG+TGG 0.523055 3_3:-60699344 None:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.523232 3_3:-60702331 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 3_3:-60703274 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 3_3:+60699538 Msa0461980:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 3_3:-60702689 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 3_3:-60699692 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 3_3:-60702893 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 3_3:+60702985 Msa0461980:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 3_3:-60699328 None:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 3_3:+60703058 Msa0461980:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 3_3:-60702835 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 3_3:-60703095 None:intergenic
AGAGAGAGAGCAGTTGCTGT+TGG 0.538410 3_3:-60699210 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 3_3:-60702452 None:intergenic
CTGTGCTTTGATAGAACCCT+TGG 0.544422 3_3:+60702633 Msa0461980:CDS
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 3_3:+60699546 Msa0461980:CDS
GGAGGAGGATGAGGAACAGG+AGG 0.545987 3_3:-60699423 None:intergenic
GGCGAAAGCTGATGCAGTAA+TGG 0.549627 3_3:+60702489 Msa0461980:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 3_3:-60699441 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 3_3:+60699443 Msa0461980:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 3_3:+60702742 Msa0461980:CDS
ATCCTCCTCCAATTATTCAT+GGG 0.557975 3_3:+60699436 Msa0461980:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 3_3:-60699557 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 3_3:-60702939 None:intergenic
AATTGGTTTGTTGATTGAAG+AGG 0.565249 3_3:-60702407 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.566299 3_3:+60699440 Msa0461980:CDS
TCTATAATAATTGTGTCGGT+AGG 0.566656 3_3:-60699470 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 3_3:+60699444 Msa0461980:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 3_3:+60703256 Msa0461980:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 3_3:+60703282 Msa0461980:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 3_3:+60702291 Msa0461980:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 3_3:-60699474 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 3_3:+60702696 Msa0461980:CDS
TTCCCATGAATAATTGGAGG+AGG 0.574863 3_3:-60699438 None:intergenic
TTGTAAGACATTAAGAAACA+TGG 0.576017 3_3:+60703324 Msa0461980:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 3_3:-60702451 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 3_3:+60702468 Msa0461980:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 3_3:-60702573 None:intergenic
AGCACGACGGACGGCTAATG+GGG 0.582077 3_3:-60699510 None:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 3_3:-60699262 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 3_3:-60702574 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 3_3:-60699664 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 3_3:+60703265 Msa0461980:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 3_3:-60702446 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 3_3:-60699519 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 3_3:+60699623 Msa0461980:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 3_3:+60699600 Msa0461980:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 3_3:+60702970 Msa0461980:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 3_3:+60703268 Msa0461980:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 3_3:-60699549 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 3_3:+60702457 Msa0461980:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 3_3:+60699382 Msa0461980:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 3_3:+60702729 Msa0461980:CDS
ATGACACCTTCTCTAAGGAT+CGG 0.626935 3_3:-60702811 None:intergenic
AGCTATAGGGAGATCACTTG+GGG 0.628255 3_3:-60703094 None:intergenic
ACTGCATTGACATCCGAGGA+AGG 0.632924 3_3:+60702676 Msa0461980:CDS
CATTCATCATAGTCCACCAA+GGG 0.639137 3_3:-60702649 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 3_3:+60702699 Msa0461980:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 3_3:+60702294 Msa0461980:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 3_3:-60699576 None:intergenic
AGGGAACCGATCCTTAGAGA+AGG 0.656837 3_3:+60702805 Msa0461980:CDS
AAGTGATCGATGTAAATACA+GGG 0.660329 3_3:+60702786 Msa0461980:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 3_3:+60702972 Msa0461980:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 3_3:+60703029 Msa0461980:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 3_3:+60703043 Msa0461980:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 3_3:-60702650 None:intergenic
CAGAACTGCATTGACATCCG+AGG 0.673802 3_3:+60702672 Msa0461980:CDS
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 3_3:-60699391 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 3_3:-60703279 None:intergenic
AAATACATAAAGTCATATGG+GGG 0.701924 3_3:-60699261 None:intergenic
CGGACGGCTAATGGGGTCTG+CGG 0.717038 3_3:-60699503 None:intergenic
GCATTGACATCCGAGGAAGG+TGG 0.729651 3_3:+60702679 Msa0461980:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 3_3:-60699523 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 3_3:+60699594 Msa0461980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAACAAAAAAAATTAAT+TGG + chr3_3:60699782-60699801 Msa0461980:intron 10.0%
!!! CTTTATTTTTTATTTAAAGT+CGG - chr3_3:60702086-60702105 None:intergenic 10.0%
!! AAAATTTCTATAGAAAAAAA+AGG + chr3_3:60703215-60703234 Msa0461980:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + chr3_3:60703216-60703235 Msa0461980:three_prime_UTR 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + chr3_3:60699812-60699831 Msa0461980:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + chr3_3:60700277-60700296 Msa0461980:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + chr3_3:60700649-60700668 Msa0461980:intron 15.0%
!!! GATAAACTTTTTTTTTTTAG+AGG - chr3_3:60700815-60700834 None:intergenic 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + chr3_3:60700819-60700838 Msa0461980:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - chr3_3:60702171-60702190 None:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG - chr3_3:60699266-60699285 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - chr3_3:60699289-60699308 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - chr3_3:60699757-60699776 None:intergenic 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - chr3_3:60700322-60700341 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - chr3_3:60700323-60700342 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + chr3_3:60700369-60700388 Msa0461980:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + chr3_3:60700456-60700475 Msa0461980:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + chr3_3:60700457-60700476 Msa0461980:intron 20.0%
!!! CTTTTTTTTTTTAGAGGAAT+TGG - chr3_3:60700809-60700828 None:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG - chr3_3:60700888-60700907 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + chr3_3:60701050-60701069 Msa0461980:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + chr3_3:60701051-60701070 Msa0461980:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + chr3_3:60702108-60702127 Msa0461980:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG + chr3_3:60702258-60702277 Msa0461980:intron 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG + chr3_3:60703168-60703187 Msa0461980:three_prime_UTR 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG + chr3_3:60703181-60703200 Msa0461980:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + chr3_3:60703224-60703243 Msa0461980:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + chr3_3:60703225-60703244 Msa0461980:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + chr3_3:60703380-60703399 Msa0461980:three_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG - chr3_3:60699264-60699283 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG - chr3_3:60699265-60699284 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - chr3_3:60699267-60699286 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - chr3_3:60699477-60699496 None:intergenic 25.0%
! TAGAAATTTCTTGTGGAAAA+AGG - chr3_3:60699750-60699769 None:intergenic 25.0%
!!! TTCTCTTTTTTGCATAAGAA+TGG + chr3_3:60700093-60700112 Msa0461980:intron 25.0%
!!! TTTTTTGCATAAGAATGGTA+AGG + chr3_3:60700098-60700117 Msa0461980:intron 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + chr3_3:60700462-60700481 Msa0461980:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - chr3_3:60700515-60700534 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + chr3_3:60700761-60700780 Msa0461980:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG - chr3_3:60700903-60700922 None:intergenic 25.0%
! AGAGTAGGAAAAAAATACAA+AGG - chr3_3:60701009-60701028 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + chr3_3:60701058-60701077 Msa0461980:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + chr3_3:60701153-60701172 Msa0461980:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + chr3_3:60701154-60701173 Msa0461980:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - chr3_3:60701421-60701440 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - chr3_3:60701578-60701597 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - chr3_3:60701760-60701779 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + chr3_3:60701759-60701778 Msa0461980:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + chr3_3:60701836-60701855 Msa0461980:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + chr3_3:60701837-60701856 Msa0461980:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG + chr3_3:60702050-60702069 Msa0461980:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - chr3_3:60702197-60702216 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - chr3_3:60702221-60702240 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + chr3_3:60702291-60702310 Msa0461980:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + chr3_3:60702294-60702313 Msa0461980:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + chr3_3:60702415-60702434 Msa0461980:CDS 25.0%
! GAATAAGGCTAAGATTATTA+GGG - chr3_3:60702537-60702556 None:intergenic 25.0%
! AGAATAAGGCTAAGATTATT+AGG - chr3_3:60702538-60702557 None:intergenic 25.0%
! AACATCATATCTCAAATTGA+CGG + chr3_3:60702970-60702989 Msa0461980:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + chr3_3:60703137-60703156 Msa0461980:exon 25.0%
! CAAATGGAAAACCAAAAATA+AGG - chr3_3:60703182-60703201 None:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG + chr3_3:60703180-60703199 Msa0461980:three_prime_UTR 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG + chr3_3:60703182-60703201 Msa0461980:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + chr3_3:60703324-60703343 Msa0461980:three_prime_UTR 25.0%
! TCTATAATAATTGTGTCGGT+AGG - chr3_3:60699473-60699492 None:intergenic 30.0%
!! TGCTTACTTTTCATCTTTGA+CGG - chr3_3:60699723-60699742 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + chr3_3:60699818-60699837 Msa0461980:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + chr3_3:60699883-60699902 Msa0461980:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + chr3_3:60699884-60699903 Msa0461980:intron 30.0%
TTGCATAATCAATTCCTTTC+TGG + chr3_3:60700202-60700221 Msa0461980:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + chr3_3:60700229-60700248 Msa0461980:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - chr3_3:60700451-60700470 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + chr3_3:60700461-60700480 Msa0461980:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + chr3_3:60700463-60700482 Msa0461980:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - chr3_3:60700541-60700560 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + chr3_3:60700541-60700560 Msa0461980:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - chr3_3:60700627-60700646 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + chr3_3:60700654-60700673 Msa0461980:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - chr3_3:60700658-60700677 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + chr3_3:60700826-60700845 Msa0461980:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - chr3_3:60700837-60700856 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + chr3_3:60700837-60700856 Msa0461980:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG - chr3_3:60700940-60700959 None:intergenic 30.0%
GTAGGAAAAAAATACAAAGG+TGG - chr3_3:60701006-60701025 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + chr3_3:60701026-60701045 Msa0461980:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG - chr3_3:60701136-60701155 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + chr3_3:60701246-60701265 Msa0461980:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - chr3_3:60701277-60701296 None:intergenic 30.0%
CAAAACAAAAATGTAGGGTA+GGG - chr3_3:60701322-60701341 None:intergenic 30.0%
CTTGGCAAAACAAAAATGTA+GGG - chr3_3:60701327-60701346 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + chr3_3:60701415-60701434 Msa0461980:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + chr3_3:60701468-60701487 Msa0461980:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - chr3_3:60701630-60701649 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - chr3_3:60701674-60701693 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - chr3_3:60701999-60702018 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + chr3_3:60701999-60702018 Msa0461980:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + chr3_3:60702128-60702147 Msa0461980:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG - chr3_3:60702348-60702367 None:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG + chr3_3:60702351-60702370 Msa0461980:CDS 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - chr3_3:60702410-60702429 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + chr3_3:60702421-60702440 Msa0461980:CDS 30.0%
! TTGGATTTGTTTCGAGAATA+AGG - chr3_3:60702552-60702571 None:intergenic 30.0%
TGTATTTACATCGATCACTT+TGG - chr3_3:60702786-60702805 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + chr3_3:60702785-60702804 Msa0461980:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + chr3_3:60702786-60702805 Msa0461980:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - chr3_3:60702896-60702915 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - chr3_3:60702897-60702916 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - chr3_3:60702947-60702966 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + chr3_3:60702971-60702990 Msa0461980:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + chr3_3:60703336-60703355 Msa0461980:three_prime_UTR 30.0%
!!! AAGTTTTAGAGAGAGAGAGT+GGG - chr3_3:60699364-60699383 None:intergenic 35.0%
!!! AAAGTTTTAGAGAGAGAGAG+TGG - chr3_3:60699365-60699384 None:intergenic 35.0%
ATCCTCCTCCAATTATTCAT+GGG + chr3_3:60699436-60699455 Msa0461980:CDS 35.0%
AAGTTTCCTAATATCACGTG+CGG - chr3_3:60699579-60699598 None:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG + chr3_3:60699594-60699613 Msa0461980:CDS 35.0%
TTGTATGCAAAGATCCAGAA+AGG - chr3_3:60700219-60700238 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + chr3_3:60700235-60700254 Msa0461980:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + chr3_3:60700294-60700313 Msa0461980:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + chr3_3:60700295-60700314 Msa0461980:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + chr3_3:60700339-60700358 Msa0461980:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - chr3_3:60700343-60700362 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + chr3_3:60700343-60700362 Msa0461980:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - chr3_3:60700435-60700454 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + chr3_3:60700548-60700567 Msa0461980:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + chr3_3:60700613-60700632 Msa0461980:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - chr3_3:60700697-60700716 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + chr3_3:60700846-60700865 Msa0461980:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + chr3_3:60700849-60700868 Msa0461980:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - chr3_3:60700936-60700955 None:intergenic 35.0%
GGAAAAAAATACAAAGGTGG+TGG - chr3_3:60701003-60701022 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - chr3_3:60701024-60701043 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + chr3_3:60701093-60701112 Msa0461980:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - chr3_3:60701101-60701120 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + chr3_3:60701116-60701135 Msa0461980:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG + chr3_3:60701130-60701149 Msa0461980:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + chr3_3:60701169-60701188 Msa0461980:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + chr3_3:60701206-60701225 Msa0461980:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + chr3_3:60701245-60701264 Msa0461980:intron 35.0%
GCAAAACAAAAATGTAGGGT+AGG - chr3_3:60701323-60701342 None:intergenic 35.0%
GCTTGGCAAAACAAAAATGT+AGG - chr3_3:60701328-60701347 None:intergenic 35.0%
! TTTTGCCAAGCAATTGTGAA+GGG + chr3_3:60701337-60701356 Msa0461980:intron 35.0%
AAAATCCCTTCACAATTGCT+TGG - chr3_3:60701345-60701364 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - chr3_3:60701384-60701403 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + chr3_3:60701395-60701414 Msa0461980:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - chr3_3:60701659-60701678 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - chr3_3:60701660-60701679 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + chr3_3:60701663-60701682 Msa0461980:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + chr3_3:60701670-60701689 Msa0461980:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - chr3_3:60701675-60701694 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + chr3_3:60701685-60701704 Msa0461980:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + chr3_3:60701740-60701759 Msa0461980:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG - chr3_3:60701789-60701808 None:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG + chr3_3:60701858-60701877 Msa0461980:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + chr3_3:60701863-60701882 Msa0461980:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - chr3_3:60701953-60701972 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - chr3_3:60702037-60702056 None:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG + chr3_3:60702298-60702317 Msa0461980:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - chr3_3:60702334-60702353 None:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG - chr3_3:60702455-60702474 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - chr3_3:60702571-60702590 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - chr3_3:60702576-60702595 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - chr3_3:60702577-60702596 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - chr3_3:60702594-60702613 None:intergenic 35.0%
!!! GCATTTTTCAGCTGTTTTTG+AGG - chr3_3:60702614-60702633 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - chr3_3:60702922-60702941 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - chr3_3:60702946-60702965 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + chr3_3:60702972-60702991 Msa0461980:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + chr3_3:60703014-60703033 Msa0461980:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - chr3_3:60703198-60703217 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + chr3_3:60703256-60703275 Msa0461980:three_prime_UTR 35.0%
TTTCTCTCACCTCTTCACAA+TGG + chr3_3:60699382-60699401 Msa0461980:exon 40.0%
TGAATAATTGGAGGAGGATG+AGG - chr3_3:60699435-60699454 None:intergenic 40.0%
CATCCTCCTCCAATTATTCA+TGG + chr3_3:60699435-60699454 Msa0461980:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - chr3_3:60699441-60699460 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + chr3_3:60699440-60699459 Msa0461980:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - chr3_3:60699444-60699463 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + chr3_3:60699443-60699462 Msa0461980:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + chr3_3:60699444-60699463 Msa0461980:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + chr3_3:60699530-60699549 Msa0461980:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - chr3_3:60699695-60699714 None:intergenic 40.0%
AGTATCCTAAGCATAGCGTT+TGG + chr3_3:60700069-60700088 Msa0461980:intron 40.0%
AGAATCCAAACGCTATGCTT+AGG - chr3_3:60700077-60700096 None:intergenic 40.0%
AGAATGGTAAGGAGAAGACA+TGG + chr3_3:60700109-60700128 Msa0461980:intron 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + chr3_3:60700347-60700366 Msa0461980:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - chr3_3:60700681-60700700 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - chr3_3:60700933-60700952 None:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG + chr3_3:60701103-60701122 Msa0461980:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - chr3_3:60701319-60701338 None:intergenic 40.0%
! GTTTTGCCAAGCAATTGTGA+AGG + chr3_3:60701336-60701355 Msa0461980:intron 40.0%
AGATGAGAGGGTAGGTAATT+TGG - chr3_3:60701372-60701391 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - chr3_3:60701385-60701404 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - chr3_3:60701399-60701418 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - chr3_3:60701511-60701530 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + chr3_3:60701514-60701533 Msa0461980:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + chr3_3:60701563-60701582 Msa0461980:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - chr3_3:60701574-60701593 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - chr3_3:60701615-60701634 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + chr3_3:60701684-60701703 Msa0461980:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + chr3_3:60701689-60701708 Msa0461980:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - chr3_3:60701741-60701760 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + chr3_3:60701739-60701758 Msa0461980:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + chr3_3:60701741-60701760 Msa0461980:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - chr3_3:60701867-60701886 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - chr3_3:60701885-60701904 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + chr3_3:60702008-60702027 Msa0461980:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + chr3_3:60702009-60702028 Msa0461980:intron 40.0%
TAAAGTCGGAGTTCATTCTC+CGG - chr3_3:60702072-60702091 None:intergenic 40.0%
!! CATAACTGGTCTTATCTTGC+AGG + chr3_3:60702272-60702291 Msa0461980:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG - chr3_3:60702454-60702473 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - chr3_3:60702456-60702475 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + chr3_3:60702457-60702476 Msa0461980:CDS 40.0%
CATTCATCATAGTCCACCAA+GGG - chr3_3:60702652-60702671 None:intergenic 40.0%
! ATGACACCTTCTCTAAGGAT+CGG - chr3_3:60702814-60702833 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + chr3_3:60703059-60703078 Msa0461980:CDS 40.0%
AGGGTGGAGGTTATTTAGAG+AGG - chr3_3:60699331-60699350 None:intergenic 45.0%
GAGAGTGGGATTTGAAGGTA+GGG - chr3_3:60699350-60699369 None:intergenic 45.0%
AGAGAGTGGGATTTGAAGGT+AGG - chr3_3:60699351-60699370 None:intergenic 45.0%
AGAGAGAGAGTGGGATTTGA+AGG - chr3_3:60699355-60699374 None:intergenic 45.0%
CCCTCCTTCCCATGAATAAT+TGG - chr3_3:60699447-60699466 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - chr3_3:60699526-60699545 None:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG + chr3_3:60699570-60699589 Msa0461980:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG + chr3_3:60699600-60699619 Msa0461980:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - chr3_3:60699951-60699970 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + chr3_3:60700346-60700365 Msa0461980:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + chr3_3:60700921-60700940 Msa0461980:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG + chr3_3:60701187-60701206 Msa0461980:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + chr3_3:60701221-60701240 Msa0461980:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - chr3_3:60701225-60701244 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + chr3_3:60701266-60701285 Msa0461980:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + chr3_3:60701283-60701302 Msa0461980:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - chr3_3:60701380-60701399 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - chr3_3:60701541-60701560 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - chr3_3:60701609-60701628 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_3:60701693-60701712 Msa0461980:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - chr3_3:60701892-60701911 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + chr3_3:60701900-60701919 Msa0461980:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - chr3_3:60701906-60701925 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - chr3_3:60701907-60701926 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - chr3_3:60701910-60701929 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + chr3_3:60701910-60701929 Msa0461980:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + chr3_3:60702021-60702040 Msa0461980:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - chr3_3:60702025-60702044 None:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG - chr3_3:60702427-60702446 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - chr3_3:60702449-60702468 None:intergenic 45.0%
CTGTGCTTTGATAGAACCCT+TGG + chr3_3:60702633-60702652 Msa0461980:CDS 45.0%
TGCTTTGATAGAACCCTTGG+TGG + chr3_3:60702636-60702655 Msa0461980:CDS 45.0%
GCATTCATCATAGTCCACCA+AGG - chr3_3:60702653-60702672 None:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG - chr3_3:60702692-60702711 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + chr3_3:60702712-60702731 Msa0461980:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + chr3_3:60702728-60702747 Msa0461980:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + chr3_3:60702729-60702748 Msa0461980:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - chr3_3:60702744-60702763 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + chr3_3:60702742-60702761 Msa0461980:CDS 45.0%
CTGGAATGACACCTTCTCTA+AGG - chr3_3:60702819-60702838 None:intergenic 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + chr3_3:60702817-60702836 Msa0461980:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + chr3_3:60702841-60702860 Msa0461980:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - chr3_3:60702928-60702947 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - chr3_3:60702942-60702961 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + chr3_3:60702985-60703004 Msa0461980:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + chr3_3:60703029-60703048 Msa0461980:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + chr3_3:60703043-60703062 Msa0461980:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + chr3_3:60703058-60703077 Msa0461980:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - chr3_3:60703097-60703116 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - chr3_3:60703098-60703117 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - chr3_3:60703282-60703301 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + chr3_3:60703282-60703301 Msa0461980:three_prime_UTR 45.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + chr3_3:60700395-60700414 Msa0461980:intron 5.0%
AGAGAGAGAGCAGTTGCTGT+TGG - chr3_3:60699213-60699232 None:intergenic 50.0%
TCATATGGGGGAGAGAGAGA+AGG - chr3_3:60699252-60699271 None:intergenic 50.0%
AGTGGGATTTGAAGGTAGGG+TGG - chr3_3:60699347-60699366 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - chr3_3:60699394-60699413 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - chr3_3:60699413-60699432 None:intergenic 50.0%
ATTGGAGGAGGATGAGGAAC+AGG - chr3_3:60699429-60699448 None:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + chr3_3:60699623-60699642 Msa0461980:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + chr3_3:60699655-60699674 Msa0461980:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + chr3_3:60699673-60699692 Msa0461980:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + chr3_3:60699931-60699950 Msa0461980:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + chr3_3:60699937-60699956 Msa0461980:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - chr3_3:60699943-60699962 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + chr3_3:60701176-60701195 Msa0461980:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + chr3_3:60701220-60701239 Msa0461980:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - chr3_3:60701226-60701245 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + chr3_3:60701224-60701243 Msa0461980:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + chr3_3:60701521-60701540 Msa0461980:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + chr3_3:60701522-60701541 Msa0461980:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - chr3_3:60701651-60701670 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - chr3_3:60701655-60701674 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_3:60701692-60701711 Msa0461980:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + chr3_3:60701702-60701721 Msa0461980:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG - chr3_3:60701930-60701949 None:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG + chr3_3:60701934-60701953 Msa0461980:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG + chr3_3:60701935-60701954 Msa0461980:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG - chr3_3:60701944-60701963 None:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + chr3_3:60702020-60702039 Msa0461980:intron 50.0%
GGCGAAAGCTGATGCAGTAA+TGG + chr3_3:60702489-60702508 Msa0461980:CDS 50.0%
! CAGAACTGCATTGACATCCG+AGG + chr3_3:60702672-60702691 Msa0461980:CDS 50.0%
! ACTGCATTGACATCCGAGGA+AGG + chr3_3:60702676-60702695 Msa0461980:CDS 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + chr3_3:60702696-60702715 Msa0461980:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + chr3_3:60702699-60702718 Msa0461980:CDS 50.0%
AGGGAACCGATCCTTAGAGA+AGG + chr3_3:60702805-60702824 Msa0461980:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - chr3_3:60702838-60702857 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - chr3_3:60702871-60702890 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - chr3_3:60703099-60703118 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + chr3_3:60703096-60703115 Msa0461980:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - chr3_3:60703110-60703129 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - chr3_3:60703111-60703130 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - chr3_3:60703277-60703296 None:intergenic 50.0%
GGGATTTGAAGGTAGGGTGG+AGG - chr3_3:60699344-60699363 None:intergenic 55.0%
GAGGATGAGGAACAGGAGGA+AGG - chr3_3:60699422-60699441 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - chr3_3:60699522-60699541 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + chr3_3:60699538-60699557 Msa0461980:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - chr3_3:60699667-60699686 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + chr3_3:60700476-60700495 Msa0461980:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + chr3_3:60701523-60701542 Msa0461980:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - chr3_3:60701529-60701548 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - chr3_3:60701652-60701671 None:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG - chr3_3:60701939-60701958 None:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG + chr3_3:60701938-60701957 Msa0461980:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG - chr3_3:60701943-60701962 None:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG - chr3_3:60701945-60701964 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + chr3_3:60702468-60702487 Msa0461980:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - chr3_3:60702486-60702505 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - chr3_3:60702487-60702506 None:intergenic 55.0%
! GCATTGACATCCGAGGAAGG+TGG + chr3_3:60702679-60702698 Msa0461980:CDS 55.0%
TATGCCAGTCCAGGCCATTG+TGG + chr3_3:60703265-60703284 Msa0461980:three_prime_UTR 55.0%
GGAGGAGGATGAGGAACAGG+AGG - chr3_3:60699426-60699445 None:intergenic 60.0%
AGCACGACGGACGGCTAATG+GGG - chr3_3:60699513-60699532 None:intergenic 60.0%
GAGCACGACGGACGGCTAAT+GGG - chr3_3:60699514-60699533 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+TGG - chr3_3:60699515-60699534 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - chr3_3:60701526-60701545 None:intergenic 60.0%
ACCTCCACAATGGCCTGGAC+TGG - chr3_3:60703272-60703291 None:intergenic 60.0%
CGGACGGCTAATGGGGTCTG+CGG - chr3_3:60699506-60699525 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + chr3_3:60699546-60699565 Msa0461980:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - chr3_3:60699560-60699579 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + chr3_3:60703268-60703287 Msa0461980:three_prime_UTR 65.0%
AAGCCGCAACTCCGGCACGC+CGG - chr3_3:60699552-60699571 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 60699205 60703417 60699205 ID=Msa0461980;Name=Msa0461980
chr3_3 mRNA 60699205 60703417 60699205 ID=Msa0461980-mRNA-1;Parent=Msa0461980;Name=Msa0461980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=196|1|1|1|1|1|2|271|395
chr3_3 exon 60699205 60699735 60699205 ID=Msa0461980-mRNA-1:exon:12674;Parent=Msa0461980-mRNA-1
chr3_3 exon 60702294 60703417 60702294 ID=Msa0461980-mRNA-1:exon:12675;Parent=Msa0461980-mRNA-1
chr3_3 five_prime_UTR 60699205 60699400 60699205 ID=Msa0461980-mRNA-1:five_prime_utr;Parent=Msa0461980-mRNA-1
chr3_3 CDS 60699401 60699735 60699401 ID=Msa0461980-mRNA-1:cds;Parent=Msa0461980-mRNA-1
chr3_3 CDS 60702294 60703146 60702294 ID=Msa0461980-mRNA-1:cds;Parent=Msa0461980-mRNA-1
chr3_3 three_prime_UTR 60703147 60703417 60703147 ID=Msa0461980-mRNA-1:three_prime_utr;Parent=Msa0461980-mRNA-1
Gene Sequence

>Msa0461980

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCATCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCATTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCCTTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATCCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa0461980

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSLILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*