AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507420 MtrunA17_Chr3g0111451 98.734 395 5 0 1 395 1 395 0.0 786
Msa0507420 MtrunA17_Chr5g0435041 74.176 364 93 1 33 395 12 375 4.16e-180 505
Msa0507420 MtrunA17_Chr5g0429231 45.151 299 161 2 48 344 41 338 6.60e-72 229
Msa0507420 MtrunA17_Chr6g0449461 35.913 323 190 8 48 360 9 324 1.00e-45 160
Msa0507420 MtrunA17_Chr3g0134761 33.133 332 203 8 5 325 10 333 5.84e-35 131
Msa0507420 MtrunA17_Chr1g0152561 31.692 325 212 6 3 325 23 339 3.05e-32 124
Msa0507420 MtrunA17_Chr7g0261371 32.759 290 187 5 31 318 504 787 2.32e-31 126
Msa0507420 MtrunA17_Chr3g0106931 32.857 280 180 5 41 318 553 826 3.76e-31 125
Msa0507420 MtrunA17_Chr3g0137061 30.286 350 208 9 56 375 126 469 8.21e-30 120
Msa0507420 MtrunA17_Chr4g0031431 33.333 273 175 5 45 315 357 624 4.50e-29 119
Msa0507420 MtrunA17_Chr7g0237931 32.061 262 169 5 58 317 351 605 3.03e-27 113
Msa0507420 MtrunA17_Chr8g0377151 33.462 260 158 6 81 331 474 727 1.39e-26 112
Msa0507420 MtrunA17_Chr2g0284461 32.500 280 178 7 45 318 400 674 5.46e-26 110
Msa0507420 MtrunA17_Chr1g0149941 32.000 275 170 7 56 318 189 458 2.72e-25 107
Msa0507420 MtrunA17_Chr2g0290151 32.000 275 146 5 85 320 179 451 4.08e-23 100
Msa0507420 MtrunA17_Chr2g0290151 29.464 224 123 5 124 317 147 365 3.74e-11 64.7
Msa0507420 MtrunA17_Chr1g0183781 30.035 283 150 6 78 318 437 713 1.43e-22 100
Msa0507420 MtrunA17_Chr3g0122721 35.088 228 135 7 97 319 489 708 4.23e-20 92.4
Msa0507420 MtrunA17_Chr5g0437411 30.072 276 183 8 48 317 412 683 1.62e-19 90.9
Msa0507420 MtrunA17_Chr5g0437411 28.977 176 121 3 124 298 406 578 1.74e-11 65.9
Msa0507420 MtrunA17_Chr4g0044411 27.402 281 159 4 80 319 372 648 5.25e-19 89.0
Msa0507420 MtrunA17_Chr7g0248251 29.455 275 175 6 54 320 380 643 6.77e-18 85.9
Msa0507420 MtrunA17_Chr1g0199321 25.979 281 161 5 80 318 344 619 2.86e-16 80.9
Msa0507420 MtrunA17_Chr4g0059201 27.875 287 181 10 48 319 429 704 6.05e-14 73.6
Msa0507420 MtrunA17_Chr8g0373031 26.816 179 126 2 141 319 536 709 1.82e-13 72.0
Msa0507420 MtrunA17_Chr5g0404311 25.616 203 143 3 128 326 520 718 1.15e-12 69.7
Msa0507420 MtrunA17_Chr7g0234671 27.407 270 180 9 58 318 188 450 1.26e-12 68.9
Msa0507420 MtrunA17_Chr7g0275081 25.735 272 187 5 59 321 189 454 1.63e-12 68.6
Msa0507420 MtrunA17_Chr2g0280671 25.830 271 180 8 56 318 122 379 1.79e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507420 AT3G03440.1 70.920 337 96 2 41 375 66 402 1.26e-147 424
Msa0507420 AT4G12710.1 47.164 335 169 5 51 378 57 390 6.41e-80 251
Msa0507420 AT5G14510.1 36.760 321 188 8 48 360 9 322 1.71e-42 152
Msa0507420 AT2G23140.3 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0507420 AT2G23140.5 32.857 280 180 5 41 318 354 627 2.82e-35 137
Msa0507420 AT2G23140.2 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0507420 AT2G23140.4 32.857 280 180 5 41 318 543 816 5.92e-35 137
Msa0507420 AT2G23140.1 32.857 280 180 5 41 318 546 819 6.05e-35 137
Msa0507420 AT3G01400.1 34.815 270 166 6 58 325 82 343 3.05e-33 127
Msa0507420 AT5G67340.1 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0507420 AT5G67340.2 33.808 281 177 6 41 318 423 697 8.49e-31 124
Msa0507420 AT5G58680.1 34.586 266 164 7 58 319 80 339 3.37e-30 119
Msa0507420 AT3G54790.2 33.929 280 176 6 48 324 445 718 3.39e-30 123
Msa0507420 AT3G54790.3 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0507420 AT3G54790.1 33.929 280 176 6 48 324 481 754 4.55e-30 122
Msa0507420 AT2G25130.1 34.657 277 156 8 54 318 132 395 1.41e-27 114
Msa0507420 AT1G71020.2 33.451 284 182 6 40 320 194 473 2.22e-26 110
Msa0507420 AT1G71020.1 33.451 284 182 6 40 320 342 621 2.86e-26 111
Msa0507420 AT4G31890.3 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0507420 AT4G31890.2 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0507420 AT4G31890.1 34.182 275 163 8 56 318 160 428 1.79e-25 108
Msa0507420 AT1G29340.1 31.288 326 202 11 12 327 384 697 2.09e-25 108
Msa0507420 AT3G46510.1 31.852 270 177 5 48 315 361 625 3.00e-24 105
Msa0507420 AT1G67530.2 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0507420 AT1G67530.1 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0507420 AT1G67530.4 30.986 284 177 7 54 326 439 714 3.41e-24 105
Msa0507420 AT4G16490.1 30.175 285 149 6 85 326 189 466 2.57e-23 101
Msa0507420 AT1G24330.1 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0507420 AT1G24330.2 32.031 256 155 7 84 329 475 721 1.54e-22 100
Msa0507420 AT3G54850.1 31.541 279 182 6 45 320 351 623 3.98e-21 95.9
Msa0507420 AT1G23030.1 27.402 281 160 5 81 320 333 610 1.61e-20 94.0
Msa0507420 AT1G27910.1 29.900 301 192 10 31 319 411 704 1.15e-18 88.6
Msa0507420 AT2G28830.1 27.306 271 188 7 48 314 292 557 1.47e-18 88.2
Msa0507420 AT5G42340.1 28.114 281 161 6 79 320 379 657 1.11e-16 82.4
Msa0507420 AT3G07360.5 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.3 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.9 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.6 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.2 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.8 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.10 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.7 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.4 27.407 270 183 6 59 320 54 318 7.99e-15 75.5
Msa0507420 AT3G07360.1 27.407 270 183 6 59 320 189 453 1.05e-14 75.9
Msa0507420 AT5G62560.1 27.239 268 171 9 63 318 258 513 1.69e-14 75.5
Msa0507420 AT1G60190.1 28.808 302 200 11 30 319 366 664 9.66e-13 70.5
Msa0507420 AT5G65200.1 26.740 273 174 8 63 319 248 510 1.65e-12 69.3
Msa0507420 AT4G21350.1 24.907 269 191 5 56 321 111 371 7.46e-11 63.5

Find 128 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATAAGGCTAAGATTATT+AGG 0.196913 3_4:-54940286 None:intergenic
TTGTTGATAACTTAACTTAT+AGG 0.206381 3_4:-54937041 None:intergenic
CCCTCCTTCCCATGAATAAT+TGG 0.239502 3_4:-54937199 None:intergenic
TTGGATTTGTTTCGAGAATA+AGG 0.252961 3_4:-54940300 None:intergenic
GCGCCACAACCACTAATAAT+TGG 0.256313 3_4:-54940175 None:intergenic
AGAGAGAGAGTGGGATTTGA+AGG 0.287224 3_4:-54937107 None:intergenic
TTCAAGCCGCACGTGATATT+AGG 0.298964 3_4:+54937325 Msa0507420:CDS
TCAGAAGCACAGCCAGCTAT+AGG 0.347463 3_4:-54940859 None:intergenic
GACAAATACATAAAGTCATA+TGG 0.361269 3_4:-54937019 None:intergenic
ATCAACAAACCAATTATTAG+TGG 0.366264 3_4:+54940166 Msa0507420:CDS
CAACAGCATGTTCCCTACTT+TGG 0.373828 3_4:-54940492 None:intergenic
CCTCCTCCTCCAATTATTCA+TGG 0.379335 3_4:+54937190 Msa0507420:CDS
CTGGAATGACACCTTCTCTA+AGG 0.385946 3_4:-54940567 None:intergenic
CTTAGAGAAGGTGTCATTCC+AGG 0.394977 3_4:+54940568 Msa0507420:CDS
AGAGAGTGGGATTTGAAGGT+AGG 0.398737 3_4:-54937103 None:intergenic
GAGCACGACGGACGGCTAAC+GGG 0.401496 3_4:-54937266 None:intergenic
CAGAAGCACAGCCAGCTATA+GGG 0.409997 3_4:-54940858 None:intergenic
ATTCTCTTAGTAGTTGCAAA+AGG 0.416206 3_4:-54940645 None:intergenic
TGGATTTCAGATCTTGGATA+AGG 0.427057 3_4:-54940670 None:intergenic
TCGGGTTGGATTTCAGATCT+TGG 0.431604 3_4:-54940676 None:intergenic
GAGGAGGAGGAACAGGAGGA+AGG 0.436210 3_4:-54937174 None:intergenic
AAAGTGATCGATGTAAATAC+AGG 0.437224 3_4:+54940536 Msa0507420:CDS
GAACAGGAGGAAGGTGAATG+AGG 0.441315 3_4:-54937165 None:intergenic
TTTATCTCACAAACCCCAAA+TGG 0.442137 3_4:-54940946 None:intergenic
TTCTATGCTCCGAGTCGACT+CGG 0.444577 3_4:+54937410 Msa0507420:CDS
GAGAGTGGGATTTGAAGGTA+GGG 0.446446 3_4:-54937102 None:intergenic
GTCAGAAAATCTAAATCTAC+AGG 0.455369 3_4:+54940102 Msa0507420:CDS
CCAGCTATAGGGAGATCACT+TGG 0.456109 3_4:-54940847 None:intergenic
CTGCATCAGCTTTCGCCTGT+GGG 0.462869 3_4:-54940234 None:intergenic
GAATAAGGCTAAGATTATTA+GGG 0.463501 3_4:-54940285 None:intergenic
ATATCAACTATGTGAGGGAT+TGG 0.465329 3_4:-54940319 None:intergenic
ACAAATACATAAAGTCATAT+GGG 0.466442 3_4:-54937018 None:intergenic
GCTCTTCAGCTTCTTAAATC+CGG 0.467072 3_4:+54937285 Msa0507420:CDS
AAAATCAATATTGTGGAGGC+TGG 0.467906 3_4:+54940049 Msa0507420:CDS
AAACCAATTATTAGTGGTTG+TGG 0.468936 3_4:+54940172 Msa0507420:CDS
CTCTAAGAATCTCGACAAGA+AGG 0.481238 3_4:-54940204 None:intergenic
AAAACGGCACTCTCCAAAGT+AGG 0.483193 3_4:+54940479 Msa0507420:CDS
TGCTTTGATAGAACCCTTGG+TGG 0.484494 3_4:+54940387 Msa0507420:CDS
TGAATAATTGGAGGAGGAGG+AGG 0.484728 3_4:-54937187 None:intergenic
CTACTTGAGCTCACTGTACA+AGG 0.484972 3_4:+54940592 Msa0507420:CDS
CTCGGTTGAGTCTCATGAAC+CGG 0.490645 3_4:+54937428 Msa0507420:CDS
ACTATATTCTCAAGAGTGTC+GGG 0.493669 3_4:-54940694 None:intergenic
ACCTCCACAATGGCCTGGAC+TGG 0.494679 3_4:-54941020 None:intergenic
AAAGAAAATGCTAGCTGAGA+TGG 0.495708 3_4:+54940765 Msa0507420:CDS
TACTATATTCTCAAGAGTGT+CGG 0.498640 3_4:-54940695 None:intergenic
GTCGTGGAGGTTCTTGAAAA+CGG 0.500560 3_4:+54940463 Msa0507420:CDS
TGTATTTACATCGATCACTT+TGG 0.506488 3_4:-54940534 None:intergenic
ACATCATATCTCAAATTGAC+GGG 0.506554 3_4:+54940722 Msa0507420:CDS
GGGATTTGAAGGTAGGGTGG+AGG 0.509242 3_4:-54937096 None:intergenic
ACTGCATCAGCTTTCGCCTG+TGG 0.510766 3_4:-54940235 None:intergenic
CCAAGTGATCTCCCTATAGC+TGG 0.512340 3_4:+54940847 Msa0507420:CDS
AAAATTGCTTACAATAGTAA+AGG 0.514770 3_4:+54941131 Msa0507420:three_prime_UTR
TCTGAGGCATTTACAGCAAA+GGG 0.516038 3_4:+54940810 Msa0507420:CDS
AGTGGGATTTGAAGGTAGGG+TGG 0.523055 3_4:-54937099 None:intergenic
GACTTGAGGAAACTAAGTAT+TGG 0.523232 3_4:-54940082 None:intergenic
TAGATACCTCCACAATGGCC+TGG 0.524367 3_4:-54941025 None:intergenic
GCTTCTTAAATCCGGCGTGC+CGG 0.525457 3_4:+54937293 Msa0507420:CDS
TGCAAGAATACCACCTTCCT+CGG 0.525981 3_4:-54940440 None:intergenic
TTAAGCAAAGCAAGAAGAGC+CGG 0.529207 3_4:-54937447 None:intergenic
TTCTCTTAGTAGTTGCAAAA+GGG 0.529464 3_4:-54940644 None:intergenic
ATTGACGGGGATGATCAATC+TGG 0.531432 3_4:+54940736 Msa0507420:CDS
AGGGTGGAGGTTATTTAGAG+AGG 0.532765 3_4:-54937083 None:intergenic
GTCTGAGGCATTTACAGCAA+AGG 0.533397 3_4:+54940809 Msa0507420:CDS
ACAGTGAGCTCAAGTAGTCC+TGG 0.534417 3_4:-54940586 None:intergenic
AGAGCACGACGGACGGCTAA+CGG 0.537195 3_4:-54937267 None:intergenic
CAGCTATAGGGAGATCACTT+GGG 0.537530 3_4:-54940846 None:intergenic
TCTAAGAATCTCGACAAGAA+GGG 0.542061 3_4:-54940203 None:intergenic
CCATGAATAATTGGAGGAGG+AGG 0.543600 3_4:-54937190 None:intergenic
CTGTGCTTTGATAGAACCCT+TGG 0.544422 3_4:+54940384 Msa0507420:CDS
AATCCGGCGTGCCGGAGTTG+CGG 0.545098 3_4:+54937301 Msa0507420:CDS
CTCCTCCTCCAATTATTCAT+GGG 0.546122 3_4:+54937191 Msa0507420:CDS
AGAGAAAGAGCAGTTGCTGT+TGG 0.548041 3_4:-54936967 None:intergenic
GGCGAAAGCTGATGCAGTAA+TGG 0.549627 3_4:+54940240 Msa0507420:CDS
TCCTTCCCATGAATAATTGG+AGG 0.550242 3_4:-54937196 None:intergenic
TCCAATTATTCATGGGAAGG+AGG 0.552701 3_4:+54937198 Msa0507420:CDS
CAAAGTAGGGAACATGCTGT+TGG 0.556934 3_4:+54940493 Msa0507420:CDS
GCGGCTTGAAGCCGCAACTC+CGG 0.558749 3_4:-54937312 None:intergenic
TATTCTCAAGAGTGTCGGGT+TGG 0.560573 3_4:-54940690 None:intergenic
TCCTCCAATTATTCATGGGA+AGG 0.564127 3_4:+54937195 Msa0507420:CDS
AATTGGTTTGTTGATTGAAG+AGG 0.565249 3_4:-54940158 None:intergenic
TCTATAATAATTGTGTCGGT+AGG 0.566656 3_4:-54937225 None:intergenic
CCAATTATTCATGGGAAGGA+GGG 0.567446 3_4:+54937199 Msa0507420:CDS
ATTATGAATTATGCCAGTCC+AGG 0.570094 3_4:+54941007 Msa0507420:three_prime_UTR
TTGTGGAGGTATCTAGTGAC+TGG 0.570735 3_4:+54941033 Msa0507420:three_prime_UTR
CAGGAATAAAATCAATATTG+TGG 0.571152 3_4:+54940042 Msa0507420:intron
AGCTTCTATAATAATTGTGT+CGG 0.572699 3_4:-54937229 None:intergenic
AGGTGGTATTCTTGCAGTCG+TGG 0.573719 3_4:+54940447 Msa0507420:CDS
TTGTAAGACATTAAGAAACA+TGG 0.576017 3_4:+54941075 Msa0507420:three_prime_UTR
CTAAGAATCTCGACAAGAAG+GGG 0.576621 3_4:-54940202 None:intergenic
TCTTAGAGACGGAAGCCCAC+AGG 0.580593 3_4:+54940219 Msa0507420:CDS
TGAGGATATCAACTATGTGA+GGG 0.581995 3_4:-54940324 None:intergenic
TTCCCATGAATAATTGGAGG+AGG 0.585638 3_4:-54937193 None:intergenic
CAAATACATAAAGTCATATG+GGG 0.586046 3_4:-54937017 None:intergenic
AGCACGACGGACGGCTAACG+GGG 0.589929 3_4:-54937265 None:intergenic
TTGAGGATATCAACTATGTG+AGG 0.590212 3_4:-54940325 None:intergenic
GAGACTCAACCGAGTCGACT+CGG 0.590880 3_4:-54937419 None:intergenic
TATGCCAGTCCAGGCCATTG+TGG 0.592164 3_4:+54941016 Msa0507420:three_prime_UTR
AATCTCGACAAGAAGGGGAA+TGG 0.593813 3_4:-54940197 None:intergenic
AAGCTGAAGAGCACGACGGA+CGG 0.604497 3_4:-54937274 None:intergenic
CGTCAGTTGTCTGAAGCTGT+CGG 0.607472 3_4:+54937378 Msa0507420:CDS
CGAAAACATCACAGAGGTGT+CGG 0.611962 3_4:+54937355 Msa0507420:CDS
AACATCATATCTCAAATTGA+CGG 0.612026 3_4:+54940721 Msa0507420:CDS
GCCAGTCCAGGCCATTGTGG+AGG 0.613077 3_4:+54941019 Msa0507420:three_prime_UTR
AAGCCGCAACTCCGGCACGC+CGG 0.613231 3_4:-54937304 None:intergenic
CTTGTCGAGATTCTTAGAGA+CGG 0.615547 3_4:+54940208 Msa0507420:CDS
TTTCTCTCACCTCTTCACAA+TGG 0.622249 3_4:+54937137 Msa0507420:exon
AAACGGCACTCTCCAAAGTA+GGG 0.624721 3_4:+54940480 Msa0507420:CDS
ATGACACCTTCTCTAAGGAT+CGG 0.626935 3_4:-54940562 None:intergenic
AGCTATAGGGAGATCACTTG+GGG 0.628255 3_4:-54940845 None:intergenic
ACTGCATTGACATCCGAGGA+AGG 0.632924 3_4:+54940427 Msa0507420:CDS
CATTCATCATAGTCCACCAA+GGG 0.639137 3_4:-54940400 None:intergenic
TGGTATTCTTGCAGTCGTGG+AGG 0.644268 3_4:+54940450 Msa0507420:CDS
GAATAAAATCAATATTGTGG+AGG 0.645985 3_4:+54940045 Msa0507420:CDS
AAGTTTCCTAATATCACGTG+CGG 0.647498 3_4:-54937331 None:intergenic
AGGGAACCGATCCTTAGAGA+AGG 0.656837 3_4:+54940556 Msa0507420:CDS
AAGTGATCGATGTAAATACA+GGG 0.660329 3_4:+54940537 Msa0507420:CDS
CATCATATCTCAAATTGACG+GGG 0.663210 3_4:+54940723 Msa0507420:CDS
TGAGATGGTTCAAGTCAGCA+TGG 0.664334 3_4:+54940780 Msa0507420:CDS
TCAGCATGGAACAAAGTCTG+AGG 0.668450 3_4:+54940794 Msa0507420:CDS
GCATTCATCATAGTCCACCA+AGG 0.671799 3_4:-54940401 None:intergenic
CAGAACTGCATTGACATCCG+AGG 0.673802 3_4:+54940423 Msa0507420:CDS
CGGACGGCTAACGGGGTCTG+CGG 0.676544 3_4:-54937258 None:intergenic
GAGGAGTGTCCATTGTGAAG+AGG 0.676784 3_4:-54937146 None:intergenic
GTCACTAGATACCTCCACAA+TGG 0.692250 3_4:-54941030 None:intergenic
AAATACATAAAGTCATATGG+GGG 0.701924 3_4:-54937016 None:intergenic
GCATTGACATCCGAGGAAGG+TGG 0.729651 3_4:+54940430 Msa0507420:CDS
TAAGAAGCTGAAGAGCACGA+CGG 0.746959 3_4:-54937278 None:intergenic
AACTTACGAAAACATCACAG+AGG 0.790561 3_4:+54937349 Msa0507420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTATTTTTTATTTAAAGT+CGG - chr3_4:54939837-54939856 None:intergenic 10.0%
!! AAAATTTCTATAGAAAAAAA+AGG + chr3_4:54940966-54940985 Msa0507420:three_prime_UTR 10.0%
!! AAATTTCTATAGAAAAAAAA+GGG + chr3_4:54940967-54940986 Msa0507420:three_prime_UTR 10.0%
!!! TTTTTTTGTGTATAGATTAT+TGG + chr3_4:54937563-54937582 Msa0507420:intron 15.0%
!!! ATTTGTATAAGAATTTTTCT+TGG + chr3_4:54938022-54938041 Msa0507420:intron 15.0%
!!! TATTTTCCTTTTATTTTTCA+TGG + chr3_4:54938394-54938413 Msa0507420:intron 15.0%
!!! AAACTTTTTTTTTTTTTGAG+AGG - chr3_4:54938560-54938579 None:intergenic 15.0%
!! AAAAAAAAAGTTTATCCAAT+TGG + chr3_4:54938567-54938586 Msa0507420:intron 15.0%
!!! AACAAACAAGATAATATTTT+TGG - chr3_4:54939922-54939941 None:intergenic 15.0%
!! ACAAATACATAAAGTCATAT+GGG - chr3_4:54937021-54937040 None:intergenic 20.0%
!!! TTGTTGATAACTTAACTTAT+AGG - chr3_4:54937044-54937063 None:intergenic 20.0%
!!! ATTTTCTTAGAAATTTCTTG+TGG - chr3_4:54937511-54937530 None:intergenic 20.0%
!!! TTTTTTGCATAAGAATGATA+AGG + chr3_4:54937843-54937862 Msa0507420:intron 20.0%
!! GGAAAAAAAAGAAAATGAAA+GGG - chr3_4:54938067-54938086 None:intergenic 20.0%
!! TGGAAAAAAAAGAAAATGAA+AGG - chr3_4:54938068-54938087 None:intergenic 20.0%
!! GAAAATATAGAAAATTTGAG+TGG + chr3_4:54938114-54938133 Msa0507420:intron 20.0%
!!! AGATAGTTTGTTAAGAATAA+TGG + chr3_4:54938201-54938220 Msa0507420:intron 20.0%
!!! GATAGTTTGTTAAGAATAAT+GGG + chr3_4:54938202-54938221 Msa0507420:intron 20.0%
!!! TTTTTTTTTTTGAGAGGAAT+TGG - chr3_4:54938554-54938573 None:intergenic 20.0%
!! TTAAAAGGAAAAGAAACAAA+AGG - chr3_4:54938636-54938655 None:intergenic 20.0%
!! GTAGGAAAAAAAAAATACAA+AGG - chr3_4:54938757-54938776 None:intergenic 20.0%
!! TGCAGAGATATTTAATAAAT+TGG + chr3_4:54938801-54938820 Msa0507420:intron 20.0%
!! GCAGAGATATTTAATAAATT+GGG + chr3_4:54938802-54938821 Msa0507420:intron 20.0%
!!! GAATTTTGATTTCTTTTGTT+TGG + chr3_4:54939859-54939878 Msa0507420:intron 20.0%
!! AATTCAATCATATTCATAAC+TGG + chr3_4:54940009-54940028 Msa0507420:intron 20.0%
!!! GTATCTTTTTTCCTTATTTT+TGG + chr3_4:54940919-54940938 Msa0507420:three_prime_UTR 20.0%
!!! TTATTTTTGGTTTTCCATTT+GGG + chr3_4:54940932-54940951 Msa0507420:three_prime_UTR 20.0%
!! ATAGAAAAAAAAGGGAAAAA+AGG + chr3_4:54940975-54940994 Msa0507420:three_prime_UTR 20.0%
!! TAGAAAAAAAAGGGAAAAAA+GGG + chr3_4:54940976-54940995 Msa0507420:three_prime_UTR 20.0%
!! AAAATTGCTTACAATAGTAA+AGG + chr3_4:54941131-54941150 Msa0507420:three_prime_UTR 20.0%
! AAATACATAAAGTCATATGG+GGG - chr3_4:54937019-54937038 None:intergenic 25.0%
! CAAATACATAAAGTCATATG+GGG - chr3_4:54937020-54937039 None:intergenic 25.0%
! GACAAATACATAAAGTCATA+TGG - chr3_4:54937022-54937041 None:intergenic 25.0%
! AGCTTCTATAATAATTGTGT+CGG - chr3_4:54937232-54937251 None:intergenic 25.0%
!!! TTTGTTAAGAATAATGGGTT+GGG + chr3_4:54938207-54938226 Msa0507420:intron 25.0%
! TCTTATTCTTATGTCAAAGA+TGG - chr3_4:54938260-54938279 None:intergenic 25.0%
! AATATGACATCAGAAAGAAT+TGG + chr3_4:54938506-54938525 Msa0507420:intron 25.0%
! AGAAAGAAGATAAGCTTAAA+AGG - chr3_4:54938651-54938670 None:intergenic 25.0%
! AAAAAAAAATACAAAGGTGG+TGG - chr3_4:54938751-54938770 None:intergenic 25.0%
! GGAAAAAAAAAATACAAAGG+TGG - chr3_4:54938754-54938773 None:intergenic 25.0%
! TATTTAATAAATTGGGACAC+AGG + chr3_4:54938809-54938828 Msa0507420:intron 25.0%
! TTATGCGTGTTCAAAAATAA+AGG + chr3_4:54938904-54938923 Msa0507420:intron 25.0%
! TATGCGTGTTCAAAAATAAA+GGG + chr3_4:54938905-54938924 Msa0507420:intron 25.0%
! AAGCCAAAACAAGAAATTTA+AGG - chr3_4:54939172-54939191 None:intergenic 25.0%
! TTAATTCAATAACCACTTTG+CGG - chr3_4:54939329-54939348 None:intergenic 25.0%
! AAAGTAAAATTTAATTCCCC+TGG - chr3_4:54939511-54939530 None:intergenic 25.0%
!! AGGGGAATTAAATTTTACTT+TGG + chr3_4:54939510-54939529 Msa0507420:intron 25.0%
! TTGTTAAGTAGATAATCGTT+TGG + chr3_4:54939587-54939606 Msa0507420:intron 25.0%
! TGTTAAGTAGATAATCGTTT+GGG + chr3_4:54939588-54939607 Msa0507420:intron 25.0%
! TGAAATTTATTGCTATAGAC+CGG + chr3_4:54939801-54939820 Msa0507420:intron 25.0%
!! ATCTGAAATAAAGAGCAAAA+AGG - chr3_4:54939948-54939967 None:intergenic 25.0%
! CAAAAAGTTAATCAATACTG+TGG - chr3_4:54939972-54939991 None:intergenic 25.0%
! CAGGAATAAAATCAATATTG+TGG + chr3_4:54940042-54940061 Msa0507420:intron 25.0%
! GAATAAAATCAATATTGTGG+AGG + chr3_4:54940045-54940064 Msa0507420:CDS 25.0%
! ATCAACAAACCAATTATTAG+TGG + chr3_4:54940166-54940185 Msa0507420:CDS 25.0%
! GAATAAGGCTAAGATTATTA+GGG - chr3_4:54940288-54940307 None:intergenic 25.0%
! AGAATAAGGCTAAGATTATT+AGG - chr3_4:54940289-54940308 None:intergenic 25.0%
! AACATCATATCTCAAATTGA+CGG + chr3_4:54940721-54940740 Msa0507420:CDS 25.0%
!!! TTTTAAGTAATAGTTGCACT+TGG + chr3_4:54940888-54940907 Msa0507420:exon 25.0%
! CAAATGGAAAACCAAAAATA+AGG - chr3_4:54940933-54940952 None:intergenic 25.0%
!!! CTTATTTTTGGTTTTCCATT+TGG + chr3_4:54940931-54940950 Msa0507420:three_prime_UTR 25.0%
!!! TATTTTTGGTTTTCCATTTG+GGG + chr3_4:54940933-54940952 Msa0507420:three_prime_UTR 25.0%
! TTGTAAGACATTAAGAAACA+TGG + chr3_4:54941075-54941094 Msa0507420:three_prime_UTR 25.0%
! TCTATAATAATTGTGTCGGT+AGG - chr3_4:54937228-54937247 None:intergenic 30.0%
!! AGCTTACTTTTCATCTTTGA+CGG - chr3_4:54937478-54937497 None:intergenic 30.0%
TGTGTATAGATTATTGGTAG+TGG + chr3_4:54937569-54937588 Msa0507420:intron 30.0%
!!! TTGAACGTGCTTTTGATTTA+TGG + chr3_4:54937634-54937653 Msa0507420:intron 30.0%
!!! TGAACGTGCTTTTGATTTAT+GGG + chr3_4:54937635-54937654 Msa0507420:intron 30.0%
TTGCATAATCAATTCCTTTC+TGG + chr3_4:54937947-54937966 Msa0507420:intron 30.0%
TTGCATACAAGTAGCATATA+CGG + chr3_4:54937974-54937993 Msa0507420:intron 30.0%
CTTAACAAACTATCTAGTCT+AGG - chr3_4:54938196-54938215 None:intergenic 30.0%
!! GTTTGTTAAGAATAATGGGT+TGG + chr3_4:54938206-54938225 Msa0507420:intron 30.0%
!! TTGTTAAGAATAATGGGTTG+GGG + chr3_4:54938208-54938227 Msa0507420:intron 30.0%
TAAGCAAAGTCATGAAAAAG+TGG - chr3_4:54938286-54938305 None:intergenic 30.0%
!! CTTTTTCATGACTTTGCTTA+TGG + chr3_4:54938286-54938305 Msa0507420:intron 30.0%
ACAGAAAAACACCAATTTCA+TGG - chr3_4:54938372-54938391 None:intergenic 30.0%
!!! TCCTTTTATTTTTCATGGTG+AGG + chr3_4:54938399-54938418 Msa0507420:intron 30.0%
TCCTCACCATGAAAAATAAA+AGG - chr3_4:54938403-54938422 None:intergenic 30.0%
AAGTTTATCCAATTGGATAG+TGG + chr3_4:54938574-54938593 Msa0507420:intron 30.0%
AAGAAAATCCACTATCCAAT+TGG - chr3_4:54938585-54938604 None:intergenic 30.0%
!!! ATTGGATAGTGGATTTTCTT+TGG + chr3_4:54938585-54938604 Msa0507420:intron 30.0%
ATGAGAACAATTAGAACCTT+AGG - chr3_4:54938688-54938707 None:intergenic 30.0%
TCTACAACTCAGATGATAAA+AGG + chr3_4:54938777-54938796 Msa0507420:intron 30.0%
! TAACCTCTTTTCTTTTTCCA+AGG - chr3_4:54938887-54938906 None:intergenic 30.0%
GAAAATCACTTTCATGCTAT+GGG + chr3_4:54938997-54939016 Msa0507420:intron 30.0%
! CATTTACACCTCACAAATTT+TGG - chr3_4:54939028-54939047 None:intergenic 30.0%
CATAACAAAAATGTAGGGTA+GGG - chr3_4:54939073-54939092 None:intergenic 30.0%
CTTGGCATAACAAAAATGTA+GGG - chr3_4:54939078-54939097 None:intergenic 30.0%
!! TGGCCTTAAATTTCTTGTTT+TGG + chr3_4:54939166-54939185 Msa0507420:intron 30.0%
!! TAGATGCTTTTTGAGAAGAA+AGG + chr3_4:54939219-54939238 Msa0507420:intron 30.0%
! GGAGTATTTATTTCTTTGCT+AGG - chr3_4:54939381-54939400 None:intergenic 30.0%
! ACCTTTTGCCTCTAATAAAA+GGG - chr3_4:54939425-54939444 None:intergenic 30.0%
AAGATGCAAGAAACTAATCA+TGG - chr3_4:54939750-54939769 None:intergenic 30.0%
!! TGATTAGTTTCTTGCATCTT+AGG + chr3_4:54939750-54939769 Msa0507420:intron 30.0%
!! TGGTATATCATGTTGCTTTA+TGG + chr3_4:54939879-54939898 Msa0507420:intron 30.0%
!! GATTTAGATTTTCTGACTTG+AGG - chr3_4:54940099-54940118 None:intergenic 30.0%
GTCAGAAAATCTAAATCTAC+AGG + chr3_4:54940102-54940121 Msa0507420:CDS 30.0%
!! AATTGGTTTGTTGATTGAAG+AGG - chr3_4:54940161-54940180 None:intergenic 30.0%
AAACCAATTATTAGTGGTTG+TGG + chr3_4:54940172-54940191 Msa0507420:CDS 30.0%
! TTGGATTTGTTTCGAGAATA+AGG - chr3_4:54940303-54940322 None:intergenic 30.0%
TGTATTTACATCGATCACTT+TGG - chr3_4:54940537-54940556 None:intergenic 30.0%
AAAGTGATCGATGTAAATAC+AGG + chr3_4:54940536-54940555 Msa0507420:CDS 30.0%
AAGTGATCGATGTAAATACA+GGG + chr3_4:54940537-54940556 Msa0507420:CDS 30.0%
TTCTCTTAGTAGTTGCAAAA+GGG - chr3_4:54940647-54940666 None:intergenic 30.0%
ATTCTCTTAGTAGTTGCAAA+AGG - chr3_4:54940648-54940667 None:intergenic 30.0%
! TACTATATTCTCAAGAGTGT+CGG - chr3_4:54940698-54940717 None:intergenic 30.0%
ACATCATATCTCAAATTGAC+GGG + chr3_4:54940722-54940741 Msa0507420:CDS 30.0%
!!! AAGAAACATGGTTTTGTAGT+TGG + chr3_4:54941087-54941106 Msa0507420:three_prime_UTR 30.0%
!!! AAGTTTTAGAGAGAGAGAGT+GGG - chr3_4:54937119-54937138 None:intergenic 35.0%
!!! AAAGTTTTAGAGAGAGAGAG+TGG - chr3_4:54937120-54937139 None:intergenic 35.0%
AAGTTTCCTAATATCACGTG+CGG - chr3_4:54937334-54937353 None:intergenic 35.0%
AACTTACGAAAACATCACAG+AGG + chr3_4:54937349-54937368 Msa0507420:CDS 35.0%
ATGCAAAAAACGCTATGCTT+AGG - chr3_4:54937833-54937852 None:intergenic 35.0%
AGAATGATAAGGAGAAGACA+TGG + chr3_4:54937854-54937873 Msa0507420:intron 35.0%
TTGTATGCAAAGATCCAGAA+AGG - chr3_4:54937964-54937983 None:intergenic 35.0%
ACAAGTAGCATATACGGTTT+AGG + chr3_4:54937980-54937999 Msa0507420:intron 35.0%
TCTTGGATTCTGTTCTTTGT+TGG + chr3_4:54938039-54938058 Msa0507420:intron 35.0%
CTTGGATTCTGTTCTTTGTT+GGG + chr3_4:54938040-54938059 Msa0507420:intron 35.0%
TCCATATCTTTGCATCTCAT+TGG + chr3_4:54938084-54938103 Msa0507420:intron 35.0%
ACCAATGAGATGCAAAGATA+TGG - chr3_4:54938088-54938107 None:intergenic 35.0%
TATCTTTGCATCTCATTGGT+TGG + chr3_4:54938088-54938107 Msa0507420:intron 35.0%
! GTCTAGGTTGAAAGAAAGAA+TGG - chr3_4:54938180-54938199 None:intergenic 35.0%
ATGACTTTGCTTATGGTACT+TGG + chr3_4:54938293-54938312 Msa0507420:intron 35.0%
CAGAAGATAAGCCATGAAAT+TGG + chr3_4:54938358-54938377 Msa0507420:intron 35.0%
CATCTTAGTTGACATTCTAG+TGG - chr3_4:54938442-54938461 None:intergenic 35.0%
!! TGGATTTTCTTTGGTTCACT+TGG + chr3_4:54938594-54938613 Msa0507420:intron 35.0%
!! ATTTTCTTTGGTTCACTTGG+TGG + chr3_4:54938597-54938616 Msa0507420:intron 35.0%
GAACAATTAGAACCTTAGGA+AGG - chr3_4:54938684-54938703 None:intergenic 35.0%
TATCATCTGAGTTGTAGAGT+AGG - chr3_4:54938775-54938794 None:intergenic 35.0%
! ATTTTCCATTTCTCAGCACT+TGG + chr3_4:54938844-54938863 Msa0507420:intron 35.0%
!! TAATACCAAGTGCTGAGAAA+TGG - chr3_4:54938852-54938871 None:intergenic 35.0%
TATTATGTGGCTAAGTTCCT+TGG + chr3_4:54938867-54938886 Msa0507420:intron 35.0%
GTTCCTTGGAAAAAGAAAAG+AGG + chr3_4:54938881-54938900 Msa0507420:intron 35.0%
ATAAAGGGAAAGTGAGAGTA+CGG + chr3_4:54938920-54938939 Msa0507420:intron 35.0%
!!! AAGGTATTGATTTTCACCCA+TGG + chr3_4:54938957-54938976 Msa0507420:intron 35.0%
GGAAAATCACTTTCATGCTA+TGG + chr3_4:54938996-54939015 Msa0507420:intron 35.0%
GCATAACAAAAATGTAGGGT+AGG - chr3_4:54939074-54939093 None:intergenic 35.0%
GCTTGGCATAACAAAAATGT+AGG - chr3_4:54939079-54939098 None:intergenic 35.0%
TTATGCCAAGCAATTGTGAA+GGG + chr3_4:54939088-54939107 Msa0507420:intron 35.0%
AAAATCCCTTCACAATTGCT+TGG - chr3_4:54939096-54939115 None:intergenic 35.0%
CATATAGGTAGTAGATGAGA+GGG - chr3_4:54939135-54939154 None:intergenic 35.0%
ACCTATATGCAAAACAAGCA+TGG + chr3_4:54939146-54939165 Msa0507420:intron 35.0%
!! TAAAAGGGTGCTTACATGTA+GGG - chr3_4:54939410-54939429 None:intergenic 35.0%
!! ATAAAAGGGTGCTTACATGT+AGG - chr3_4:54939411-54939430 None:intergenic 35.0%
! TGTAAGCACCCTTTTATTAG+AGG + chr3_4:54939414-54939433 Msa0507420:intron 35.0%
! ACCCTTTTATTAGAGGCAAA+AGG + chr3_4:54939421-54939440 Msa0507420:intron 35.0%
! CACCTTTTGCCTCTAATAAA+AGG - chr3_4:54939426-54939445 None:intergenic 35.0%
!! GCAAAAGGTGCTTACATATA+GGG + chr3_4:54939436-54939455 Msa0507420:intron 35.0%
ATCACAAGATTGTTAAGCCA+GGG + chr3_4:54939491-54939510 Msa0507420:intron 35.0%
! AATGAATGATAAGAGTGCAG+AGG - chr3_4:54939540-54939559 None:intergenic 35.0%
GGAGAACCAGATTTCAAATA+TGG + chr3_4:54939609-54939628 Msa0507420:intron 35.0%
ACCAGATTTCAAATATGGAC+CGG + chr3_4:54939614-54939633 Msa0507420:intron 35.0%
!!! AATTTTTTGTCTCCACCCTT+CGG - chr3_4:54939704-54939723 None:intergenic 35.0%
AATTTCAATCACACCCTAGA+AGG - chr3_4:54939788-54939807 None:intergenic 35.0%
AAAATCAATATTGTGGAGGC+TGG + chr3_4:54940049-54940068 Msa0507420:CDS 35.0%
GACTTGAGGAAACTAAGTAT+TGG - chr3_4:54940085-54940104 None:intergenic 35.0%
TCTAAGAATCTCGACAAGAA+GGG - chr3_4:54940206-54940225 None:intergenic 35.0%
ATATCAACTATGTGAGGGAT+TGG - chr3_4:54940322-54940341 None:intergenic 35.0%
TGAGGATATCAACTATGTGA+GGG - chr3_4:54940327-54940346 None:intergenic 35.0%
TTGAGGATATCAACTATGTG+AGG - chr3_4:54940328-54940347 None:intergenic 35.0%
! AGGACTTTTTGCATGTTTTG+AGG - chr3_4:54940345-54940364 None:intergenic 35.0%
!!! GCATTTTTCAGCTGTTTTTG+AGG - chr3_4:54940365-54940384 None:intergenic 35.0%
TGGATTTCAGATCTTGGATA+AGG - chr3_4:54940673-54940692 None:intergenic 35.0%
!! ACTATATTCTCAAGAGTGTC+GGG - chr3_4:54940697-54940716 None:intergenic 35.0%
CATCATATCTCAAATTGACG+GGG + chr3_4:54940723-54940742 Msa0507420:CDS 35.0%
AAAGAAAATGCTAGCTGAGA+TGG + chr3_4:54940765-54940784 Msa0507420:CDS 35.0%
TTTATCTCACAAACCCCAAA+TGG - chr3_4:54940949-54940968 None:intergenic 35.0%
ATTATGAATTATGCCAGTCC+AGG + chr3_4:54941007-54941026 Msa0507420:three_prime_UTR 35.0%
TTTCTCTCACCTCTTCACAA+TGG + chr3_4:54937137-54937156 Msa0507420:exon 40.0%
CTCCTCCTCCAATTATTCAT+GGG + chr3_4:54937191-54937210 Msa0507420:CDS 40.0%
TTCCCATGAATAATTGGAGG+AGG - chr3_4:54937196-54937215 None:intergenic 40.0%
TCCTCCAATTATTCATGGGA+AGG + chr3_4:54937195-54937214 Msa0507420:CDS 40.0%
TCCTTCCCATGAATAATTGG+AGG - chr3_4:54937199-54937218 None:intergenic 40.0%
TCCAATTATTCATGGGAAGG+AGG + chr3_4:54937198-54937217 Msa0507420:CDS 40.0%
CCAATTATTCATGGGAAGGA+GGG + chr3_4:54937199-54937218 Msa0507420:CDS 40.0%
GCTCTTCAGCTTCTTAAATC+CGG + chr3_4:54937285-54937304 Msa0507420:CDS 40.0%
TTAAGCAAAGCAAGAAGAGC+CGG - chr3_4:54937450-54937469 None:intergenic 40.0%
! TTTGCATCTCATTGGTTGGT+GGG + chr3_4:54938092-54938111 Msa0507420:intron 40.0%
CTAGTGGTCATAAGATGACA+TGG - chr3_4:54938426-54938445 None:intergenic 40.0%
CAATTAGAACCTTAGGAAGG+AGG - chr3_4:54938681-54938700 None:intergenic 40.0%
TCTCAGCACTTGGTATTATG+TGG + chr3_4:54938854-54938873 Msa0507420:intron 40.0%
AACAAAAATGTAGGGTAGGG+AGG - chr3_4:54939070-54939089 None:intergenic 40.0%
GTTATGCCAAGCAATTGTGA+AGG + chr3_4:54939087-54939106 Msa0507420:intron 40.0%
AGATGAGAGGGTAGGTAATT+TGG - chr3_4:54939123-54939142 None:intergenic 40.0%
GCATATAGGTAGTAGATGAG+AGG - chr3_4:54939136-54939155 None:intergenic 40.0%
!!! GCCATGCTTGTTTTGCATAT+AGG - chr3_4:54939150-54939169 None:intergenic 40.0%
AAAGGTGGAAATGAGAGAGA+TGG - chr3_4:54939262-54939281 None:intergenic 40.0%
CTCTCATTTCCACCTTTCTT+CGG + chr3_4:54939265-54939284 Msa0507420:intron 40.0%
ATATTTGTCCAACCGCAAAG+TGG + chr3_4:54939314-54939333 Msa0507420:intron 40.0%
TTCAATAACCACTTTGCGGT+TGG - chr3_4:54939325-54939344 None:intergenic 40.0%
! TTGCTAGGCACAAGTTTTCA+TGG - chr3_4:54939366-54939385 None:intergenic 40.0%
!! GGCAAAAGGTGCTTACATAT+AGG + chr3_4:54939435-54939454 Msa0507420:intron 40.0%
! AAGGTGCTTACATATAGGGA+CGG + chr3_4:54939440-54939459 Msa0507420:intron 40.0%
CTGGCTTAACAATCTTGTGA+TGG - chr3_4:54939492-54939511 None:intergenic 40.0%
CATCACAAGATTGTTAAGCC+AGG + chr3_4:54939490-54939509 Msa0507420:intron 40.0%
TCACAAGATTGTTAAGCCAG+GGG + chr3_4:54939492-54939511 Msa0507420:intron 40.0%
! TCCGGTCCATATTTGAAATC+TGG - chr3_4:54939618-54939637 None:intergenic 40.0%
! GGTATGTAAAGTCTGGTTTC+CGG - chr3_4:54939636-54939655 None:intergenic 40.0%
! TCTTGCATCTTAGGCCTTAT+TGG + chr3_4:54939759-54939778 Msa0507420:intron 40.0%
!! CTTGCATCTTAGGCCTTATT+GGG + chr3_4:54939760-54939779 Msa0507420:intron 40.0%
TAAAGTCGGAGTTCATTCTC+CGG - chr3_4:54939823-54939842 None:intergenic 40.0%
!! CATAACTGGTCTTATCTTGC+AGG + chr3_4:54940023-54940042 Msa0507420:intron 40.0%
CTAAGAATCTCGACAAGAAG+GGG - chr3_4:54940205-54940224 None:intergenic 40.0%
! CTCTAAGAATCTCGACAAGA+AGG - chr3_4:54940207-54940226 None:intergenic 40.0%
CTTGTCGAGATTCTTAGAGA+CGG + chr3_4:54940208-54940227 Msa0507420:CDS 40.0%
CATTCATCATAGTCCACCAA+GGG - chr3_4:54940403-54940422 None:intergenic 40.0%
! ATGACACCTTCTCTAAGGAT+CGG - chr3_4:54940565-54940584 None:intergenic 40.0%
! TCTGAGGCATTTACAGCAAA+GGG + chr3_4:54940810-54940829 Msa0507420:CDS 40.0%
AGAGAAAGAGCAGTTGCTGT+TGG - chr3_4:54936970-54936989 None:intergenic 45.0%
AGGGTGGAGGTTATTTAGAG+AGG - chr3_4:54937086-54937105 None:intergenic 45.0%
GAGAGTGGGATTTGAAGGTA+GGG - chr3_4:54937105-54937124 None:intergenic 45.0%
AGAGAGTGGGATTTGAAGGT+AGG - chr3_4:54937106-54937125 None:intergenic 45.0%
AGAGAGAGAGTGGGATTTGA+AGG - chr3_4:54937110-54937129 None:intergenic 45.0%
TGAATAATTGGAGGAGGAGG+AGG - chr3_4:54937190-54937209 None:intergenic 45.0%
CCATGAATAATTGGAGGAGG+AGG - chr3_4:54937193-54937212 None:intergenic 45.0%
CCTCCTCCTCCAATTATTCA+TGG + chr3_4:54937190-54937209 Msa0507420:CDS 45.0%
CCCTCCTTCCCATGAATAAT+TGG - chr3_4:54937202-54937221 None:intergenic 45.0%
! TAAGAAGCTGAAGAGCACGA+CGG - chr3_4:54937281-54937300 None:intergenic 45.0%
TTCAAGCCGCACGTGATATT+AGG + chr3_4:54937325-54937344 Msa0507420:CDS 45.0%
! CGAAAACATCACAGAGGTGT+CGG + chr3_4:54937355-54937374 Msa0507420:CDS 45.0%
AGATCGAATCTCCAACACCA+TGG - chr3_4:54937702-54937721 None:intergenic 45.0%
! CTTTGCATCTCATTGGTTGG+TGG + chr3_4:54938091-54938110 Msa0507420:intron 45.0%
CTGAAGTAACCTCCTTCCTA+AGG + chr3_4:54938669-54938688 Msa0507420:intron 45.0%
TACGGAGTGTGGTAGAAGTA+AGG + chr3_4:54938938-54938957 Msa0507420:intron 45.0%
!! ACCCATGGTTTCTAGCTAGA+GGG + chr3_4:54938972-54938991 Msa0507420:intron 45.0%
ACCCTCTAGCTAGAAACCAT+GGG - chr3_4:54938976-54938995 None:intergenic 45.0%
GGGAGTGACCAAAATTTGTG+AGG + chr3_4:54939017-54939036 Msa0507420:intron 45.0%
GTGAGGTGTAAATGAGTTGC+AGG + chr3_4:54939034-54939053 Msa0507420:intron 45.0%
TAGGTAGTAGATGAGAGGGT+AGG - chr3_4:54939131-54939150 None:intergenic 45.0%
GTTCTTTCAACAACTCCCCT+AGG - chr3_4:54939292-54939311 None:intergenic 45.0%
! GGCACAAGTTTTCATGGTAC+TGG - chr3_4:54939360-54939379 None:intergenic 45.0%
TGCTTACATATAGGGACGGA+GGG + chr3_4:54939444-54939463 Msa0507420:intron 45.0%
! ACAGGAGGGTATGTAAAGTC+TGG - chr3_4:54939643-54939662 None:intergenic 45.0%
ATACCCTCCTGTTCAAACTC+TGG + chr3_4:54939651-54939670 Msa0507420:intron 45.0%
GATCCAGAGTTTGAACAGGA+GGG - chr3_4:54939657-54939676 None:intergenic 45.0%
TGATCCAGAGTTTGAACAGG+AGG - chr3_4:54939658-54939677 None:intergenic 45.0%
TGGTGATCCAGAGTTTGAAC+AGG - chr3_4:54939661-54939680 None:intergenic 45.0%
GTTCAAACTCTGGATCACCA+AGG + chr3_4:54939661-54939680 Msa0507420:intron 45.0%
! GCCTTATTGGGTACCTTCTA+GGG + chr3_4:54939772-54939791 Msa0507420:intron 45.0%
!! ACCCTAGAAGGTACCCAATA+AGG - chr3_4:54939776-54939795 None:intergenic 45.0%
GCGCCACAACCACTAATAAT+TGG - chr3_4:54940178-54940197 None:intergenic 45.0%
AATCTCGACAAGAAGGGGAA+TGG - chr3_4:54940200-54940219 None:intergenic 45.0%
CTGTGCTTTGATAGAACCCT+TGG + chr3_4:54940384-54940403 Msa0507420:CDS 45.0%
TGCTTTGATAGAACCCTTGG+TGG + chr3_4:54940387-54940406 Msa0507420:CDS 45.0%
GCATTCATCATAGTCCACCA+AGG - chr3_4:54940404-54940423 None:intergenic 45.0%
TGCAAGAATACCACCTTCCT+CGG - chr3_4:54940443-54940462 None:intergenic 45.0%
GTCGTGGAGGTTCTTGAAAA+CGG + chr3_4:54940463-54940482 Msa0507420:CDS 45.0%
AAAACGGCACTCTCCAAAGT+AGG + chr3_4:54940479-54940498 Msa0507420:CDS 45.0%
AAACGGCACTCTCCAAAGTA+GGG + chr3_4:54940480-54940499 Msa0507420:CDS 45.0%
CAACAGCATGTTCCCTACTT+TGG - chr3_4:54940495-54940514 None:intergenic 45.0%
CAAAGTAGGGAACATGCTGT+TGG + chr3_4:54940493-54940512 Msa0507420:CDS 45.0%
CTGGAATGACACCTTCTCTA+AGG - chr3_4:54940570-54940589 None:intergenic 45.0%
!! CTTAGAGAAGGTGTCATTCC+AGG + chr3_4:54940568-54940587 Msa0507420:CDS 45.0%
CTACTTGAGCTCACTGTACA+AGG + chr3_4:54940592-54940611 Msa0507420:CDS 45.0%
!! TCGGGTTGGATTTCAGATCT+TGG - chr3_4:54940679-54940698 None:intergenic 45.0%
!! TATTCTCAAGAGTGTCGGGT+TGG - chr3_4:54940693-54940712 None:intergenic 45.0%
ATTGACGGGGATGATCAATC+TGG + chr3_4:54940736-54940755 Msa0507420:CDS 45.0%
TGAGATGGTTCAAGTCAGCA+TGG + chr3_4:54940780-54940799 Msa0507420:CDS 45.0%
TCAGCATGGAACAAAGTCTG+AGG + chr3_4:54940794-54940813 Msa0507420:CDS 45.0%
! GTCTGAGGCATTTACAGCAA+AGG + chr3_4:54940809-54940828 Msa0507420:CDS 45.0%
AGCTATAGGGAGATCACTTG+GGG - chr3_4:54940848-54940867 None:intergenic 45.0%
CAGCTATAGGGAGATCACTT+GGG - chr3_4:54940849-54940868 None:intergenic 45.0%
GTCACTAGATACCTCCACAA+TGG - chr3_4:54941033-54941052 None:intergenic 45.0%
!! TTGTGGAGGTATCTAGTGAC+TGG + chr3_4:54941033-54941052 Msa0507420:three_prime_UTR 45.0%
!! AAACAAAAAAAAAAATTAAT+TGG + chr3_4:54937534-54937553 Msa0507420:intron 5.0%
!!! TTTATTTTGTTTTTTATTAT+TGG + chr3_4:54938140-54938159 Msa0507420:intron 5.0%
TCATATGGGGGAGAGAGAGA+AGG - chr3_4:54937007-54937026 None:intergenic 50.0%
AGTGGGATTTGAAGGTAGGG+TGG - chr3_4:54937102-54937121 None:intergenic 50.0%
!! GAGGAGTGTCCATTGTGAAG+AGG - chr3_4:54937149-54937168 None:intergenic 50.0%
GAACAGGAGGAAGGTGAATG+AGG - chr3_4:54937168-54937187 None:intergenic 50.0%
! CGTCAGTTGTCTGAAGCTGT+CGG + chr3_4:54937378-54937397 Msa0507420:CDS 50.0%
TTCTATGCTCCGAGTCGACT+CGG + chr3_4:54937410-54937429 Msa0507420:CDS 50.0%
CTCGGTTGAGTCTCATGAAC+CGG + chr3_4:54937428-54937447 Msa0507420:CDS 50.0%
CATGTGATGCCTTGAAGCCA+TGG + chr3_4:54937682-54937701 Msa0507420:intron 50.0%
ATGCCTTGAAGCCATGGTGT+TGG + chr3_4:54937688-54937707 Msa0507420:intron 50.0%
TCTCCAACACCATGGCTTCA+AGG - chr3_4:54937694-54937713 None:intergenic 50.0%
! GAAAGTGAGAGTACGGAGTG+TGG + chr3_4:54938927-54938946 Msa0507420:intron 50.0%
!! CACCCATGGTTTCTAGCTAG+AGG + chr3_4:54938971-54938990 Msa0507420:intron 50.0%
CACCCTCTAGCTAGAAACCA+TGG - chr3_4:54938977-54938996 None:intergenic 50.0%
!! CATGGTTTCTAGCTAGAGGG+TGG + chr3_4:54938975-54938994 Msa0507420:intron 50.0%
TTCCACCTTTCTTCGGTCCT+AGG + chr3_4:54939272-54939291 Msa0507420:intron 50.0%
TCCACCTTTCTTCGGTCCTA+GGG + chr3_4:54939273-54939292 Msa0507420:intron 50.0%
TGCTTACATGTAGGGACGGA+GGG - chr3_4:54939402-54939421 None:intergenic 50.0%
! AGGGTGCTTACATGTAGGGA+CGG - chr3_4:54939406-54939425 None:intergenic 50.0%
GTGCTTACATATAGGGACGG+AGG + chr3_4:54939443-54939462 Msa0507420:intron 50.0%
! ATAGGGACGGAGGGAGTATA+TGG + chr3_4:54939453-54939472 Msa0507420:intron 50.0%
TTATCAGGGGAAGGAAGCCT+TGG - chr3_4:54939681-54939700 None:intergenic 50.0%
TTCCTTCCCCTGATAACCGA+AGG + chr3_4:54939685-54939704 Msa0507420:intron 50.0%
TCCTTCCCCTGATAACCGAA+GGG + chr3_4:54939686-54939705 Msa0507420:intron 50.0%
TCTCCACCCTTCGGTTATCA+GGG - chr3_4:54939695-54939714 None:intergenic 50.0%
!! GGCCTTATTGGGTACCTTCT+AGG + chr3_4:54939771-54939790 Msa0507420:intron 50.0%
GGCGAAAGCTGATGCAGTAA+TGG + chr3_4:54940240-54940259 Msa0507420:CDS 50.0%
! CAGAACTGCATTGACATCCG+AGG + chr3_4:54940423-54940442 Msa0507420:CDS 50.0%
! ACTGCATTGACATCCGAGGA+AGG + chr3_4:54940427-54940446 Msa0507420:CDS 50.0%
AGGTGGTATTCTTGCAGTCG+TGG + chr3_4:54940447-54940466 Msa0507420:CDS 50.0%
TGGTATTCTTGCAGTCGTGG+AGG + chr3_4:54940450-54940469 Msa0507420:CDS 50.0%
AGGGAACCGATCCTTAGAGA+AGG + chr3_4:54940556-54940575 Msa0507420:CDS 50.0%
ACAGTGAGCTCAAGTAGTCC+TGG - chr3_4:54940589-54940608 None:intergenic 50.0%
!! CGCGCTTTTGTCTGAGACTT+CGG - chr3_4:54940622-54940641 None:intergenic 50.0%
CCAGCTATAGGGAGATCACT+TGG - chr3_4:54940850-54940869 None:intergenic 50.0%
CCAAGTGATCTCCCTATAGC+TGG + chr3_4:54940847-54940866 Msa0507420:CDS 50.0%
! CAGAAGCACAGCCAGCTATA+GGG - chr3_4:54940861-54940880 None:intergenic 50.0%
! TCAGAAGCACAGCCAGCTAT+AGG - chr3_4:54940862-54940881 None:intergenic 50.0%
TAGATACCTCCACAATGGCC+TGG - chr3_4:54941028-54941047 None:intergenic 50.0%
GGGATTTGAAGGTAGGGTGG+AGG - chr3_4:54937099-54937118 None:intergenic 55.0%
ATTGGAGGAGGAGGAGGAAC+AGG - chr3_4:54937184-54937203 None:intergenic 55.0%
! AAGCTGAAGAGCACGACGGA+CGG - chr3_4:54937277-54937296 None:intergenic 55.0%
GCTTCTTAAATCCGGCGTGC+CGG + chr3_4:54937293-54937312 Msa0507420:CDS 55.0%
GAGACTCAACCGAGTCGACT+CGG - chr3_4:54937422-54937441 None:intergenic 55.0%
! TGGGTTGGGGTGTAGAGAGT+TGG + chr3_4:54938221-54938240 Msa0507420:intron 55.0%
CCACCTTTCTTCGGTCCTAG+GGG + chr3_4:54939274-54939293 Msa0507420:intron 55.0%
ACTCCCCTAGGACCGAAGAA+AGG - chr3_4:54939280-54939299 None:intergenic 55.0%
GTGCTTACATGTAGGGACGG+AGG - chr3_4:54939403-54939422 None:intergenic 55.0%
ACCCTTCGGTTATCAGGGGA+AGG - chr3_4:54939690-54939709 None:intergenic 55.0%
TTCCCCTGATAACCGAAGGG+TGG + chr3_4:54939689-54939708 Msa0507420:intron 55.0%
CTCCACCCTTCGGTTATCAG+GGG - chr3_4:54939694-54939713 None:intergenic 55.0%
GTCTCCACCCTTCGGTTATC+AGG - chr3_4:54939696-54939715 None:intergenic 55.0%
TCTTAGAGACGGAAGCCCAC+AGG + chr3_4:54940219-54940238 Msa0507420:CDS 55.0%
CTGCATCAGCTTTCGCCTGT+GGG - chr3_4:54940237-54940256 None:intergenic 55.0%
ACTGCATCAGCTTTCGCCTG+TGG - chr3_4:54940238-54940257 None:intergenic 55.0%
! GCATTGACATCCGAGGAAGG+TGG + chr3_4:54940430-54940449 Msa0507420:CDS 55.0%
TATGCCAGTCCAGGCCATTG+TGG + chr3_4:54941016-54941035 Msa0507420:three_prime_UTR 55.0%
GAGGAGGAGGAACAGGAGGA+AGG - chr3_4:54937177-54937196 None:intergenic 60.0%
AGAGCACGACGGACGGCTAA+CGG - chr3_4:54937270-54937289 None:intergenic 60.0%
CCCCTAGGACCGAAGAAAGG+TGG - chr3_4:54939277-54939296 None:intergenic 60.0%
ACCTCCACAATGGCCTGGAC+TGG - chr3_4:54941023-54941042 None:intergenic 60.0%
GGAGGAGGAGGAGGAACAGG+AGG - chr3_4:54937181-54937200 None:intergenic 65.0%
AGCACGACGGACGGCTAACG+GGG - chr3_4:54937268-54937287 None:intergenic 65.0%
GAGCACGACGGACGGCTAAC+GGG - chr3_4:54937269-54937288 None:intergenic 65.0%
AATCCGGCGTGCCGGAGTTG+CGG + chr3_4:54937301-54937320 Msa0507420:CDS 65.0%
GCGGCTTGAAGCCGCAACTC+CGG - chr3_4:54937315-54937334 None:intergenic 65.0%
GCCAGTCCAGGCCATTGTGG+AGG + chr3_4:54941019-54941038 Msa0507420:three_prime_UTR 65.0%
CGGACGGCTAACGGGGTCTG+CGG - chr3_4:54937261-54937280 None:intergenic 70.0%
AAGCCGCAACTCCGGCACGC+CGG - chr3_4:54937307-54937326 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 54936962 54941168 54936962 ID=Msa0507420;Name=Msa0507420
chr3_4 mRNA 54936962 54941168 54936962 ID=Msa0507420-mRNA-1;Parent=Msa0507420;Name=Msa0507420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=194|1|1|1|1|1|2|271|395
chr3_4 exon 54936962 54937490 54936962 ID=Msa0507420-mRNA-1:exon:12110;Parent=Msa0507420-mRNA-1
chr3_4 exon 54940045 54941168 54940045 ID=Msa0507420-mRNA-1:exon:12111;Parent=Msa0507420-mRNA-1
chr3_4 five_prime_UTR 54936962 54937155 54936962 ID=Msa0507420-mRNA-1:five_prime_utr;Parent=Msa0507420-mRNA-1
chr3_4 CDS 54937156 54937490 54937156 ID=Msa0507420-mRNA-1:cds;Parent=Msa0507420-mRNA-1
chr3_4 CDS 54940045 54940897 54940045 ID=Msa0507420-mRNA-1:cds;Parent=Msa0507420-mRNA-1
chr3_4 three_prime_UTR 54940898 54941168 54940898 ID=Msa0507420-mRNA-1:three_prime_utr;Parent=Msa0507420-mRNA-1
Gene Sequence

>Msa0507420

ATGGACACTCCTCATTCACCTTCCTCCTGTTCCTCCTCCTCCTCCAATTATTCATGGGAAGGAGGGCATCCTACCGACACAATTATTATAGAAGCTGAAGAGCCGCAGACCCCGTTAGCCGTCCGTCGTGCTCTTCAGCTTCTTAAATCCGGCGTGCCGGAGTTGCGGCTTCAAGCCGCACGTGATATTAGGAAACTTACGAAAACATCACAGAGGTGTCGGCGTCAGTTGTCTGAAGCTGTCGGTACGCTTGTTTCTATGCTCCGAGTCGACTCGGTTGAGTCTCATGAACCGGCTCTTCTTGCTTTGCTTAATCTCGCCGTCAAAGATGAAAAGAATAAAATCAATATTGTGGAGGCTGGAGCATTAGAACCAATACTTAGTTTCCTCAAGTCAGAAAATCTAAATCTACAGGCATCTGCAGCTGCAGCTTTGCTCACACTATCTGCCTCTTCAATCAACAAACCAATTATTAGTGGTTGTGGCGCCATTCCCCTTCTTGTCGAGATTCTTAGAGACGGAAGCCCACAGGCGAAAGCTGATGCAGTAATGGCTCTCTCTAATTTATCAACATACCCTAATAATCTTAGCCTTATTCTCGAAACAAATCCAATCCCTCACATAGTTGATATCCTCAAAACATGCAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAACCCTTGGTGGACTATGATGAATGCAGAACTGCATTGACATCCGAGGAAGGTGGTATTCTTGCAGTCGTGGAGGTTCTTGAAAACGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAACACTATTGACAATGTGCCAAAGTGATCGATGTAAATACAGGGAACCGATCCTTAGAGAAGGTGTCATTCCAGGACTACTTGAGCTCACTGTACAAGGAACACCGAAGTCTCAGACAAAAGCGCGCACCCTTTTGCAACTACTAAGAGAATCTCCTTATCCAAGATCTGAAATCCAACCCGACACTCTTGAGAATATAGTATGCAACATCATATCTCAAATTGACGGGGATGATCAATCTGGTAAAGCAAAGAAAATGCTAGCTGAGATGGTTCAAGTCAGCATGGAACAAAGTCTGAGGCATTTACAGCAAAGGGCACTTGTATGCACCCCAAGTGATCTCCCTATAGCTGGCTGTGCTTCTGAAGTTTCTTTTAAGTAA
Protein sequence

>Msa0507420

MDTPHSPSSCSSSSSNYSWEGGHPTDTIIIEAEEPQTPLAVRRALQLLKSGVPELRLQAARDIRKLTKTSQRCRRQLSEAVGTLVSMLRVDSVESHEPALLALLNLAVKDEKNKINIVEAGALEPILSFLKSENLNLQASAAAALLTLSASSINKPIISGCGAIPLLVEILRDGSPQAKADAVMALSNLSTYPNNLSLILETNPIPHIVDILKTCKKSSKTAEKCCALIEPLVDYDECRTALTSEEGGILAVVEVLENGTLQSREHAVGTLLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSFK*