AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0483290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483290 MtrunA17_Chr6g0451021 98.681 379 5 0 1 379 1 379 0.0 759
Msa0483290 MtrunA17_Chr2g0295931 34.473 351 160 6 31 372 5 294 9.73e-57 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0483290 AT5G14790.1 54.404 386 120 8 1 379 1 337 1.41e-119 350
Msa0483290 AT3G01450.1 52.094 382 122 5 1 379 1 324 6.75e-113 332
Msa0483290 AT3G01450.2 52.094 382 122 5 1 379 1 324 6.75e-113 332
Msa0483290 AT4G15830.1 38.462 312 135 4 65 371 35 294 4.53e-62 201
Msa0483290 AT3G18530.1 45.487 277 141 5 1 276 1 268 1.47e-53 181
Msa0483290 AT3G18530.3 69.118 136 42 0 115 250 9 144 5.98e-51 171
Msa0483290 AT3G18530.2 67.200 125 41 0 126 250 1 125 1.76e-43 151

Find 102 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGGTATGGTTGCAATTT+TGG 0.187233 3_3:-91350087 None:intergenic
TGATCTTATAATAGATTCTT+TGG 0.215909 3_3:+91349837 Msa0483290:CDS
TCACTCTTCCTTTCAGTTGC+AGG 0.227531 3_3:-91349040 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 3_3:-91350991 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 3_3:-91351018 None:intergenic
CAGGAAGCTGGTCGCTCAAT+TGG 0.275487 3_3:-91350873 None:intergenic
TTGGTTTCCCCACATGTTAA+TGG 0.287937 3_3:+91349154 Msa0483290:CDS
CATTTGCATGTGAGTGTGTA+TGG 0.329105 3_3:-91347263 None:intergenic
GCTAATTCTGTTGTAGAGAT+TGG 0.332829 3_3:+91349193 Msa0483290:CDS
AGTACAGCTTGAGCACTTAA+AGG 0.343680 3_3:-91351177 None:intergenic
GAGAATGAAATTGAAAAGAG+TGG 0.354836 3_3:-91347405 None:intergenic
CAAGATTCTGTCACGATCTC+TGG 0.359738 3_3:-91351126 None:intergenic
TCAGATACTGTCACGGTCTC+TGG 0.360081 3_3:-91351072 None:intergenic
TTCTCGAAGTGTTCCACAAC+TGG 0.360569 3_3:+91350152 Msa0483290:CDS
CAATAAATAGAGAGAGATTT+GGG 0.365061 3_3:-91347292 None:intergenic
TATTAAGTGGAAACGGTAAT+AGG 0.365212 3_3:-91347319 None:intergenic
TCAGATACTGTCTCGGTCTC+TGG 0.365420 3_3:-91351099 None:intergenic
GCAATAAATAGAGAGAGATT+TGG 0.365718 3_3:-91347293 None:intergenic
CCCACATGTTAATGGAAATC+AGG 0.366358 3_3:+91349162 Msa0483290:CDS
AGCAGCTCGAACCCTACTTC+TGG 0.366714 3_3:+91350906 Msa0483290:CDS
AATAGATTCTTTGGATCCTC+TGG 0.383460 3_3:+91349846 Msa0483290:CDS
AATCTCTCTCTATTTATTGC+CGG 0.387022 3_3:+91347296 Msa0483290:five_prime_UTR
AGTGGCTGCTGGCACGAGAT+TGG 0.387556 3_3:-91350956 None:intergenic
CAGAGATCGTGACAGAATCT+TGG 0.389277 3_3:+91351127 Msa0483290:CDS
TAGGGTTCGAGCTGCTTCTC+TGG 0.400244 3_3:-91350899 None:intergenic
CTCTTTCTTTCTTCACTCGT+CGG 0.409712 3_3:+91347363 Msa0483290:five_prime_UTR
GTGGCTGCTGGCACGAGATT+GGG 0.420543 3_3:-91350955 None:intergenic
TGTTAACAGACCCTCTTAGC+TGG 0.450176 3_3:+91349482 Msa0483290:intron
ACAAGTAGTCATTGATATCA+AGG 0.452524 3_3:-91350043 None:intergenic
CTTGAGCACTTAAAGGAGAA+AGG 0.455045 3_3:-91351170 None:intergenic
AAGACCCTCCCGTGCAATGC+TGG 0.466560 3_3:-91351208 None:intergenic
AGGAAGCTGGTCGCTCAATT+GGG 0.467947 3_3:-91350872 None:intergenic
TGAAACGACGGCGTATTAAG+TGG 0.472897 3_3:-91347332 None:intergenic
AGCATTGTCAACAGGAGGCT+TGG 0.476134 3_3:-91349086 None:intergenic
AGAGATCGTGACAGAATCTT+GGG 0.483962 3_3:+91351128 Msa0483290:CDS
CTGGACTAGACTCAAAGGAT+TGG 0.485003 3_3:+91349501 Msa0483290:CDS
GCAGAAGGCATAAATACATA+TGG 0.486424 3_3:+91350820 Msa0483290:CDS
CTTCTCTGGACTCAGGAAGC+TGG 0.493252 3_3:-91350885 None:intergenic
TGCATCCTCTGATACTGTCT+CGG 0.499453 3_3:-91351025 None:intergenic
TGGACTAGACTCAAAGGATT+GGG 0.500742 3_3:+91349502 Msa0483290:CDS
TGATGCCTTTGCACGAACAC+GGG 0.509631 3_3:-91350121 None:intergenic
ATTTGCATGTGAGTGTGTAT+GGG 0.511157 3_3:-91347262 None:intergenic
AGACTCAAAGGATTGGGTCC+TGG 0.512503 3_3:+91349508 Msa0483290:CDS
TTGTTTGGATAGGGTGCAGA+AGG 0.515020 3_3:+91350805 Msa0483290:intron
TATCTCAGACTATAGCTGAC+CGG 0.515438 3_3:+91348980 Msa0483290:intron
TTGATGCCTTTGCACGAACA+CGG 0.516013 3_3:-91350122 None:intergenic
TTGAGTCTAGTCCAGCTAAG+AGG 0.519140 3_3:-91349493 None:intergenic
CCAAGGCCCTGAAAAGTCCT+AGG 0.528718 3_3:+91349758 Msa0483290:CDS
GCTTCTTCTCAAGTCTTCAC+AGG 0.533896 3_3:+91349987 Msa0483290:CDS
TGGATCCTCTGATACTGTCT+CGG 0.534414 3_3:-91350998 None:intergenic
GAAGAGTGAGGGCTCTGGTA+AGG 0.534884 3_3:+91349054 Msa0483290:CDS
TCCTCAGATACAGTGGCTGC+TGG 0.535902 3_3:-91350967 None:intergenic
AGAATGAAATTGAAAAGAGT+GGG 0.539799 3_3:-91347404 None:intergenic
CAGTGCTGTCTCCGACATCC+CGG 0.542785 3_3:-91348999 None:intergenic
TGTGACCAGCATTGCACGGG+AGG 0.542793 3_3:+91351203 Msa0483290:CDS
GGGTGCTTGTGCTTAAGGTA+TGG 0.543193 3_3:-91350099 None:intergenic
TTCGTGTGACCAGCATTGCA+CGG 0.548504 3_3:+91351199 Msa0483290:CDS
ATCTCTACAACAGAATTAGC+AGG 0.549861 3_3:-91349190 None:intergenic
TGAGTCTAGTCCAGCTAAGA+GGG 0.551003 3_3:-91349492 None:intergenic
ATCTCAGACTATAGCTGACC+GGG 0.551091 3_3:+91348981 Msa0483290:intron
ATAATATTCCTGCAACTGAA+AGG 0.555415 3_3:+91349032 Msa0483290:CDS
GAAAGGAAGAGTGAGGGCTC+TGG 0.555889 3_3:+91349049 Msa0483290:CDS
AAAGGTACTCATACCAGTTG+TGG 0.558875 3_3:-91350165 None:intergenic
GTGAAGAAAGAAAGAGACAA+AGG 0.560248 3_3:-91347356 None:intergenic
GCCTGATTTCCATTAACATG+TGG 0.560884 3_3:-91349163 None:intergenic
CGAGCTGCTTCTCTGGACTC+AGG 0.564410 3_3:-91350892 None:intergenic
ACTATAGCTGACCGGGATGT+CGG 0.573760 3_3:+91348988 Msa0483290:exon
TGGTTCCTCAGATACTGTCT+CGG 0.574128 3_3:-91351106 None:intergenic
TCGTGTGACCAGCATTGCAC+GGG 0.575627 3_3:+91351200 Msa0483290:CDS
AAGTGGAAACGGTAATAGGC+CGG 0.580584 3_3:-91347315 None:intergenic
TCATTAGCATTGTCAACAGG+AGG 0.580927 3_3:-91349091 None:intergenic
CCTGATTTCCATTAACATGT+GGG 0.582748 3_3:-91349162 None:intergenic
TACAACAGAATTAGCAGGCA+CGG 0.583722 3_3:-91349185 None:intergenic
GATGTCGGAGACAGCACTGA+AGG 0.584563 3_3:+91349003 Msa0483290:exon
AATGTCAGCAGATGTCATAA+TGG 0.592994 3_3:-91349800 None:intergenic
GCCAGCAGCCACTGTATCTG+AGG 0.601163 3_3:+91350966 Msa0483290:CDS
CTTAGCTGGACTAGACTCAA+AGG 0.601990 3_3:+91349496 Msa0483290:CDS
GACGGCGTATTAAGTGGAAA+CGG 0.603726 3_3:-91347326 None:intergenic
GATGCCTTTGCACGAACACG+GGG 0.604224 3_3:-91350120 None:intergenic
TGGATCCTCTGATACTGTCA+CGG 0.608295 3_3:-91351052 None:intergenic
GTGACCAGCATTGCACGGGA+GGG 0.615180 3_3:+91351204 Msa0483290:CDS
TTTGCATGTGAGTGTGTATG+GGG 0.616888 3_3:-91347261 None:intergenic
CTGATTTCCATTAACATGTG+GGG 0.618242 3_3:-91349161 None:intergenic
TGCAACTGAAAGGAAGAGTG+AGG 0.618257 3_3:+91349042 Msa0483290:CDS
AACATGTGGGGAAACCAAAG+AGG 0.636905 3_3:-91349149 None:intergenic
TGTGATCACACGTATTGCCA+AGG 0.639205 3_3:+91349741 Msa0483290:CDS
GGACAAACGCTTTGTATGTG+AGG 0.643274 3_3:+91350008 Msa0483290:CDS
AGAAGAAGAATGAGTCAACT+CGG 0.646400 3_3:-91347438 None:intergenic
GCAACTGAAAGGAAGAGTGA+GGG 0.647825 3_3:+91349043 Msa0483290:CDS
TATTTAGAGTATCACAAACC+AGG 0.649406 3_3:-91349526 None:intergenic
CTTTGGATCCTCAGATACAG+TGG 0.658342 3_3:-91350974 None:intergenic
AAAGACCGAGACAGTATCAG+AGG 0.660252 3_3:+91350993 Msa0483290:CDS
AAAGACCGAGACAGTATCAG+AGG 0.660252 3_3:+91351020 Msa0483290:CDS
TGGATCCTCAGATACTGTCA+CGG 0.660853 3_3:-91351079 None:intergenic
AGAGACCGAGACAGTATCTG+AGG 0.663041 3_3:+91351101 Msa0483290:CDS
AGAGACCGTGACAGTATCTG+AGG 0.663328 3_3:+91351074 Msa0483290:CDS
AAAGACCGTGACAGTATCAG+AGG 0.679340 3_3:+91351047 Msa0483290:CDS
AGTACCGAATGAAGAAAATG+CGG 0.683323 3_3:-91347487 None:intergenic
AGAGACAAAGGATGAAACGA+CGG 0.693825 3_3:-91347344 None:intergenic
AGATGTTGATGCTTGTGTCA+AGG 0.696782 3_3:+91349264 Msa0483290:CDS
TTGCATGTGAGTGTGTATGG+GGG 0.755086 3_3:-91347260 None:intergenic
ATGCCTTTGCACGAACACGG+GGG 0.759816 3_3:-91350119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAGAATTTTGT+TGG + chr3_3:91348118-91348137 Msa0483290:intron 10.0%
!!! TTTTTTTTTAGAATTTTGTT+GGG + chr3_3:91348119-91348138 Msa0483290:intron 10.0%
!!! ATTATTTTATCCATATTTTT+TGG + chr3_3:91349288-91349307 Msa0483290:intron 10.0%
!!! TTATTTTATCCATATTTTTT+GGG + chr3_3:91349289-91349308 Msa0483290:intron 10.0%
!!! TAAACAAATTAATATTTTCA+GGG - chr3_3:91350579-91350598 None:intergenic 10.0%
!!! ATAAACAAATTAATATTTTC+AGG - chr3_3:91350580-91350599 None:intergenic 10.0%
!!! GAAAATATTAATTTGTTTAT+TGG + chr3_3:91350580-91350599 Msa0483290:intron 10.0%
!! CAGAAAATAAATCAAAAAAT+TGG - chr3_3:91347945-91347964 None:intergenic 15.0%
!!! TTAAATAATTTTTTGCTCTA+TGG + chr3_3:91348775-91348794 Msa0483290:intron 15.0%
!!! TTTTACAGAAGTTAAATAAA+TGG + chr3_3:91348908-91348927 Msa0483290:intron 15.0%
!! AAATATCGAAAAAGAATTTA+AGG - chr3_3:91349386-91349405 None:intergenic 15.0%
!! TATATAAAGCTAATAATCAA+AGG - chr3_3:91349410-91349429 None:intergenic 15.0%
!! TAAATTATTCATATGCTATA+TGG + chr3_3:91349705-91349724 Msa0483290:intron 15.0%
!! AAAACAAACGTAAAAAATTA+TGG - chr3_3:91350347-91350366 None:intergenic 15.0%
!!! ATAATTTTTTACGTTTGTTT+TGG + chr3_3:91350346-91350365 Msa0483290:intron 15.0%
!!! TGAATTTTTGTGAATATATG+TGG + chr3_3:91347735-91347754 Msa0483290:intron 20.0%
!! AATCAAATGATTGTAATGTT+AGG + chr3_3:91347972-91347991 Msa0483290:intron 20.0%
!!! ATTTAGGATTGAAATGTAAA+GGG + chr3_3:91347995-91348014 Msa0483290:intron 20.0%
!!! GATATCTTATATTTAGAACT+AGG + chr3_3:91348426-91348445 Msa0483290:intron 20.0%
!!! AGTAGATCATTTTTTGTTTT+TGG + chr3_3:91348506-91348525 Msa0483290:intron 20.0%
!! ATTGTAATTTGAAGAGATAT+TGG + chr3_3:91348731-91348750 Msa0483290:intron 20.0%
!!! TTTAAAGTTCTAAACATTTC+TGG - chr3_3:91348760-91348779 None:intergenic 20.0%
!! TGATCTTATAATAGATTCTT+TGG + chr3_3:91349837-91349856 Msa0483290:CDS 20.0%
!! GAAGCTTTCTTAAATAATTT+GGG - chr3_3:91350403-91350422 None:intergenic 20.0%
!! AGAAGCTTTCTTAAATAATT+TGG - chr3_3:91350404-91350423 None:intergenic 20.0%
!!! CAATGATTTTAATTGATACA+TGG + chr3_3:91350549-91350568 Msa0483290:intron 20.0%
! CAATAAATAGAGAGAGATTT+GGG - chr3_3:91347295-91347314 None:intergenic 25.0%
! AGAATGAAATTGAAAAGAGT+GGG - chr3_3:91347407-91347426 None:intergenic 25.0%
! AATCGAATGATTGTAATGTT+AGG + chr3_3:91347764-91347783 Msa0483290:intron 25.0%
!! TGATTGTAATGTTAGGTTTT+AGG + chr3_3:91347771-91347790 Msa0483290:intron 25.0%
!!! TTGATTTTTGAGTTGAACTT+TGG + chr3_3:91347898-91347917 Msa0483290:intron 25.0%
! TGATTGTAATGTTAGGATTT+AGG + chr3_3:91347979-91347998 Msa0483290:intron 25.0%
!! GATTTAGGATTGAAATGTAA+AGG + chr3_3:91347994-91348013 Msa0483290:intron 25.0%
! TACAGAAGTTAAATAAATGG+TGG + chr3_3:91348911-91348930 Msa0483290:intron 25.0%
!!! AAGTTGATAACCATTGAAAT+TGG + chr3_3:91349335-91349354 Msa0483290:intron 25.0%
!!! TGACATAAAATAGGTATTGA+AGG - chr3_3:91349438-91349457 None:intergenic 25.0%
! TAACGATACTGACATAAAAT+AGG - chr3_3:91349447-91349466 None:intergenic 25.0%
! CCTTATGAAAAATAGACAAA+CGG - chr3_3:91349559-91349578 None:intergenic 25.0%
!! AATGTTTTCTGATTGAAAGA+TGG + chr3_3:91349621-91349640 Msa0483290:intron 25.0%
!! AATATGCAATGGTTTTTGTT+TGG + chr3_3:91349669-91349688 Msa0483290:intron 25.0%
! TTGCAAATTTAATAGTGCAA+AGG - chr3_3:91349889-91349908 None:intergenic 25.0%
! GTAAATTGACATGTTCTTAA+TGG + chr3_3:91349947-91349966 Msa0483290:intron 25.0%
! GTCTATGTTAAATTCTTGAA+TGG + chr3_3:91350427-91350446 Msa0483290:intron 25.0%
!!! CTATTTGATTTTGCTATGTT+AGG - chr3_3:91350501-91350520 None:intergenic 25.0%
! ACATAGCAAAATCAAATAGA+AGG + chr3_3:91350502-91350521 Msa0483290:intron 25.0%
! TAACCTGCTAGTATTAATAT+TGG + chr3_3:91350641-91350660 Msa0483290:intron 25.0%
!! TTAACATCTTCTCTTTTGTT+TGG + chr3_3:91350790-91350809 Msa0483290:intron 25.0%
GCAATAAATAGAGAGAGATT+TGG - chr3_3:91347296-91347315 None:intergenic 30.0%
AATCTCTCTCTATTTATTGC+CGG + chr3_3:91347296-91347315 Msa0483290:five_prime_UTR 30.0%
TATTAAGTGGAAACGGTAAT+AGG - chr3_3:91347322-91347341 None:intergenic 30.0%
GAGAATGAAATTGAAAAGAG+TGG - chr3_3:91347408-91347427 None:intergenic 30.0%
AGTAATTACAGTGAATCGTA+CGG - chr3_3:91347550-91347569 None:intergenic 30.0%
AGTACAAAATGAAAGCAACT+AGG - chr3_3:91348161-91348180 None:intergenic 30.0%
! TGTTTGAAGTGAAAGTTCAT+TGG + chr3_3:91348337-91348356 Msa0483290:intron 30.0%
AAGTGAAAGTTCATTGGAAT+TGG + chr3_3:91348343-91348362 Msa0483290:intron 30.0%
! ATGGTAGTGTAATTGTGATT+TGG + chr3_3:91348460-91348479 Msa0483290:intron 30.0%
!! AATTGTGATTTGGTGAGATA+TGG + chr3_3:91348470-91348489 Msa0483290:intron 30.0%
!! TAAGAGTGTTGTATTTGAAG+TGG + chr3_3:91348581-91348600 Msa0483290:intron 30.0%
!!! TTTGCAGTAGTTGTTTTTCT+TGG + chr3_3:91348632-91348651 Msa0483290:intron 30.0%
GATAAATCGAATTGAGAACT+AGG + chr3_3:91348686-91348705 Msa0483290:intron 30.0%
! GCTATAGTCTGAGATAAAAA+AGG - chr3_3:91348976-91348995 None:intergenic 30.0%
ATAATATTCCTGCAACTGAA+AGG + chr3_3:91349032-91349051 Msa0483290:CDS 30.0%
! TTTTCATTAGCATTGTCAAC+AGG - chr3_3:91349097-91349116 None:intergenic 30.0%
!!! TATCCATATTTTTTGGGTAG+AGG + chr3_3:91349295-91349314 Msa0483290:intron 30.0%
!!! ATCCATATTTTTTGGGTAGA+GGG + chr3_3:91349296-91349315 Msa0483290:intron 30.0%
! TATTTAGAGTATCACAAACC+AGG - chr3_3:91349529-91349548 None:intergenic 30.0%
!! CCGTTTGTCTATTTTTCATA+AGG + chr3_3:91349556-91349575 Msa0483290:CDS 30.0%
TACCATTGCTTAATATGCAA+TGG + chr3_3:91349658-91349677 Msa0483290:intron 30.0%
AACCATTGCATATTAAGCAA+TGG - chr3_3:91349663-91349682 None:intergenic 30.0%
TCATATGCTATATGGTAAAC+AGG + chr3_3:91349713-91349732 Msa0483290:intron 30.0%
CATATGCTATATGGTAAACA+GGG + chr3_3:91349714-91349733 Msa0483290:intron 30.0%
ATATGCTATATGGTAAACAG+GGG + chr3_3:91349715-91349734 Msa0483290:intron 30.0%
CAAATTTAATAGTGCAAAGG+AGG - chr3_3:91349886-91349905 None:intergenic 30.0%
AATTGACATGTTCTTAATGG+TGG + chr3_3:91349950-91349969 Msa0483290:intron 30.0%
ACAAGTAGTCATTGATATCA+AGG - chr3_3:91350046-91350065 None:intergenic 30.0%
!! ATTTTGGCAGCAATGAAATA+GGG - chr3_3:91350074-91350093 None:intergenic 30.0%
!! AATTTTGGCAGCAATGAAAT+AGG - chr3_3:91350075-91350094 None:intergenic 30.0%
! TTAAGGTATGGTTGCAATTT+TGG - chr3_3:91350090-91350109 None:intergenic 30.0%
AAGATGAGCAAAAGTCATAA+AGG - chr3_3:91350186-91350205 None:intergenic 30.0%
ATCACAGAAAATCATTTCGT+GGG - chr3_3:91350262-91350281 None:intergenic 30.0%
!! AACCAAAATTTTAGGAACCT+TGG + chr3_3:91350301-91350320 Msa0483290:intron 30.0%
TTATGGAATTTCATCATCAG+TGG - chr3_3:91350330-91350349 None:intergenic 30.0%
AGACCAATATTAATACTAGC+AGG - chr3_3:91350647-91350666 None:intergenic 30.0%
!! ATATCTGTTTTGTTCTACCA+TGG + chr3_3:91350668-91350687 Msa0483290:intron 30.0%
TGCTCTGCTAGTATTAATAT+TGG + chr3_3:91350693-91350712 Msa0483290:intron 30.0%
GCTAGGAAGGTTAATAAATA+TGG + chr3_3:91350736-91350755 Msa0483290:intron 30.0%
!! ATCTTCTCTTTTGTTTGGAT+AGG + chr3_3:91350795-91350814 Msa0483290:intron 30.0%
!! TCTTCTCTTTTGTTTGGATA+GGG + chr3_3:91350796-91350815 Msa0483290:intron 30.0%
ATTTGCATGTGAGTGTGTAT+GGG - chr3_3:91347265-91347284 None:intergenic 35.0%
GTGAAGAAAGAAAGAGACAA+AGG - chr3_3:91347359-91347378 None:intergenic 35.0%
AGAAGAAGAATGAGTCAACT+CGG - chr3_3:91347441-91347460 None:intergenic 35.0%
! TTCTCCGCATTTTCTTCATT+CGG + chr3_3:91347483-91347502 Msa0483290:five_prime_UTR 35.0%
! AGTACCGAATGAAGAAAATG+CGG - chr3_3:91347490-91347509 None:intergenic 35.0%
AAATTGGCACAGTAATCACA+CGG - chr3_3:91347929-91347948 None:intergenic 35.0%
!!! GTTGCAATCATCGATTTTCT+TGG + chr3_3:91348371-91348390 Msa0483290:intron 35.0%
GAACTAGGAAATTAGAGCAA+TGG + chr3_3:91348441-91348460 Msa0483290:intron 35.0%
AAAAATGATCTACTCGCTCA+TGG - chr3_3:91348500-91348519 None:intergenic 35.0%
!! TTCAGTTCTAAGGTTGGAAT+TGG + chr3_3:91348607-91348626 Msa0483290:intron 35.0%
GAACTAGGAAATAAGAGCAA+TGG + chr3_3:91348701-91348720 Msa0483290:intron 35.0%
GAAGAAAAACTGTTCCTCTT+TGG + chr3_3:91349135-91349154 Msa0483290:CDS 35.0%
CTGATTTCCATTAACATGTG+GGG - chr3_3:91349164-91349183 None:intergenic 35.0%
CCTGATTTCCATTAACATGT+GGG - chr3_3:91349165-91349184 None:intergenic 35.0%
ATCTCTACAACAGAATTAGC+AGG - chr3_3:91349193-91349212 None:intergenic 35.0%
GCTAATTCTGTTGTAGAGAT+TGG + chr3_3:91349193-91349212 Msa0483290:CDS 35.0%
GATAACCATTGAAATTGGTG+TGG + chr3_3:91349340-91349359 Msa0483290:intron 35.0%
TTGAACCACACCAATTTCAA+TGG - chr3_3:91349348-91349367 None:intergenic 35.0%
TATGCTATATGGTAAACAGG+GGG + chr3_3:91349716-91349735 Msa0483290:intron 35.0%
AATGTCAGCAGATGTCATAA+TGG - chr3_3:91349803-91349822 None:intergenic 35.0%
! ATGACATCTGCTGACATTTT+CGG + chr3_3:91349805-91349824 Msa0483290:CDS 35.0%
AATAGATTCTTTGGATCCTC+TGG + chr3_3:91349846-91349865 Msa0483290:CDS 35.0%
GGAATTCTATAACTTACCAG+AGG - chr3_3:91349865-91349884 None:intergenic 35.0%
! TTTTGGCAGCAATGAAATAG+GGG - chr3_3:91350073-91350092 None:intergenic 35.0%
CATCACAGAAAATCATTTCG+TGG - chr3_3:91350263-91350282 None:intergenic 35.0%
! CACGAAATGATTTTCTGTGA+TGG + chr3_3:91350261-91350280 Msa0483290:intron 35.0%
! AGCGACGAAACCAAAATTTT+AGG + chr3_3:91350293-91350312 Msa0483290:intron 35.0%
! GACCAAGGTTCCTAAAATTT+TGG - chr3_3:91350306-91350325 None:intergenic 35.0%
! TGTTTATTGGGAGCATGTAT+TGG + chr3_3:91350593-91350612 Msa0483290:intron 35.0%
TATATCTGTTCTGTTCAGCT+AGG + chr3_3:91350719-91350738 Msa0483290:intron 35.0%
! GCAGAAGGCATAAATACATA+TGG + chr3_3:91350820-91350839 Msa0483290:CDS 35.0%
TTTGCATGTGAGTGTGTATG+GGG - chr3_3:91347264-91347283 None:intergenic 40.0%
CATTTGCATGTGAGTGTGTA+TGG - chr3_3:91347266-91347285 None:intergenic 40.0%
AGAGACAAAGGATGAAACGA+CGG - chr3_3:91347347-91347366 None:intergenic 40.0%
CTCTTTCTTTCTTCACTCGT+CGG + chr3_3:91347363-91347382 Msa0483290:five_prime_UTR 40.0%
! GCAGTGATTTGAAGTGTATC+TGG + chr3_3:91348303-91348322 Msa0483290:intron 40.0%
GAAGTGGAAGTTCAGTTCTA+AGG + chr3_3:91348597-91348616 Msa0483290:intron 40.0%
!! TGGAAGTTCAGTTCTAAGGT+TGG + chr3_3:91348601-91348620 Msa0483290:intron 40.0%
! GTTTGAGTTTCTCTTCTTGC+CGG + chr3_3:91348933-91348952 Msa0483290:intron 40.0%
! TTTGAGTTTCTCTTCTTGCC+GGG + chr3_3:91348934-91348953 Msa0483290:intron 40.0%
TATCTCAGACTATAGCTGAC+CGG + chr3_3:91348980-91348999 Msa0483290:intron 40.0%
TCATTAGCATTGTCAACAGG+AGG - chr3_3:91349094-91349113 None:intergenic 40.0%
TTGGTTTCCCCACATGTTAA+TGG + chr3_3:91349154-91349173 Msa0483290:CDS 40.0%
CCCACATGTTAATGGAAATC+AGG + chr3_3:91349162-91349181 Msa0483290:CDS 40.0%
GCCTGATTTCCATTAACATG+TGG - chr3_3:91349166-91349185 None:intergenic 40.0%
TACAACAGAATTAGCAGGCA+CGG - chr3_3:91349188-91349207 None:intergenic 40.0%
AGATGTTGATGCTTGTGTCA+AGG + chr3_3:91349264-91349283 Msa0483290:CDS 40.0%
GTCCCTCTACCCAAAAAATA+TGG - chr3_3:91349301-91349320 None:intergenic 40.0%
ATTGGTGTGGTTCAATACCT+TGG + chr3_3:91349353-91349372 Msa0483290:intron 40.0%
TTGGTGTGGTTCAATACCTT+GGG + chr3_3:91349354-91349373 Msa0483290:intron 40.0%
GAATTTAAGGAAACACCCCA+AGG - chr3_3:91349373-91349392 None:intergenic 40.0%
! TGGACTAGACTCAAAGGATT+GGG + chr3_3:91349502-91349521 Msa0483290:CDS 40.0%
ATGCTATATGGTAAACAGGG+GGG + chr3_3:91349717-91349736 Msa0483290:intron 40.0%
!! GTTTTGATAACAGCACTCCT+AGG - chr3_3:91349778-91349797 None:intergenic 40.0%
GTAATCTCAGCATACACTTG+TGG + chr3_3:91349922-91349941 Msa0483290:intron 40.0%
!! AAAGGTACTCATACCAGTTG+TGG - chr3_3:91350168-91350187 None:intergenic 40.0%
GGAGCATGTATTGGATTTCT+AGG + chr3_3:91350602-91350621 Msa0483290:intron 40.0%
! AATACTAGCAGAGCATTCCA+TGG - chr3_3:91350688-91350707 None:intergenic 40.0%
!!! GTTTTGAAGCTCCAGAAGTA+GGG - chr3_3:91350920-91350939 None:intergenic 40.0%
AGAGATCGTGACAGAATCTT+GGG + chr3_3:91351128-91351147 Msa0483290:CDS 40.0%
CTTGAGCACTTAAAGGAGAA+AGG - chr3_3:91351173-91351192 None:intergenic 40.0%
AGTACAGCTTGAGCACTTAA+AGG - chr3_3:91351180-91351199 None:intergenic 40.0%
TTGCATGTGAGTGTGTATGG+GGG - chr3_3:91347263-91347282 None:intergenic 45.0%
AAGTGGAAACGGTAATAGGC+CGG - chr3_3:91347318-91347337 None:intergenic 45.0%
GACGGCGTATTAAGTGGAAA+CGG - chr3_3:91347329-91347348 None:intergenic 45.0%
TGAAACGACGGCGTATTAAG+TGG - chr3_3:91347335-91347354 None:intergenic 45.0%
GGCAGACAGACAATTAAACC+CGG - chr3_3:91348955-91348974 None:intergenic 45.0%
ATCTCAGACTATAGCTGACC+GGG + chr3_3:91348981-91349000 Msa0483290:intron 45.0%
TCACTCTTCCTTTCAGTTGC+AGG - chr3_3:91349043-91349062 None:intergenic 45.0%
TGCAACTGAAAGGAAGAGTG+AGG + chr3_3:91349042-91349061 Msa0483290:CDS 45.0%
GCAACTGAAAGGAAGAGTGA+GGG + chr3_3:91349043-91349062 Msa0483290:CDS 45.0%
AACATGTGGGGAAACCAAAG+AGG - chr3_3:91349152-91349171 None:intergenic 45.0%
!! TTTTGGGTAGAGGGACTAGA+TGG + chr3_3:91349305-91349324 Msa0483290:intron 45.0%
TTTGGGTAGAGGGACTAGAT+GGG + chr3_3:91349306-91349325 Msa0483290:intron 45.0%
TGGTGTGGTTCAATACCTTG+GGG + chr3_3:91349355-91349374 Msa0483290:intron 45.0%
TGTTAACAGACCCTCTTAGC+TGG + chr3_3:91349482-91349501 Msa0483290:intron 45.0%
TGAGTCTAGTCCAGCTAAGA+GGG - chr3_3:91349495-91349514 None:intergenic 45.0%
TTGAGTCTAGTCCAGCTAAG+AGG - chr3_3:91349496-91349515 None:intergenic 45.0%
! CTTAGCTGGACTAGACTCAA+AGG + chr3_3:91349496-91349515 Msa0483290:CDS 45.0%
! CTGGACTAGACTCAAAGGAT+TGG + chr3_3:91349501-91349520 Msa0483290:CDS 45.0%
TGTGATCACACGTATTGCCA+AGG + chr3_3:91349741-91349760 Msa0483290:CDS 45.0%
! AGCACTCCTAGGACTTTTCA+GGG - chr3_3:91349767-91349786 None:intergenic 45.0%
GCTTCTTCTCAAGTCTTCAC+AGG + chr3_3:91349987-91350006 Msa0483290:CDS 45.0%
GGACAAACGCTTTGTATGTG+AGG + chr3_3:91350008-91350027 Msa0483290:CDS 45.0%
TTGATGCCTTTGCACGAACA+CGG - chr3_3:91350125-91350144 None:intergenic 45.0%
! TTCTCGAAGTGTTCCACAAC+TGG + chr3_3:91350152-91350171 Msa0483290:CDS 45.0%
TTCATCATCAGTGGTGACCA+AGG - chr3_3:91350321-91350340 None:intergenic 45.0%
TCTGTTCTGTTCAGCTAGGA+AGG + chr3_3:91350723-91350742 Msa0483290:intron 45.0%
ATTCAGTCGCAAACATAGGC+TGG - chr3_3:91350762-91350781 None:intergenic 45.0%
CCACATTCAGTCGCAAACAT+AGG - chr3_3:91350766-91350785 None:intergenic 45.0%
CCTATGTTTGCGACTGAATG+TGG + chr3_3:91350763-91350782 Msa0483290:intron 45.0%
TTGTTTGGATAGGGTGCAGA+AGG + chr3_3:91350805-91350824 Msa0483290:intron 45.0%
!!! CGTTTTGAAGCTCCAGAAGT+AGG - chr3_3:91350921-91350940 None:intergenic 45.0%
CTTTGGATCCTCAGATACAG+TGG - chr3_3:91350977-91350996 None:intergenic 45.0%
TCTGATACTGTCTCGGTCTT+TGG - chr3_3:91350994-91351013 None:intergenic 45.0%
AAAGACCGAGACAGTATCAG+AGG + chr3_3:91350993-91351012 Msa0483290:CDS 45.0%
TGGATCCTCTGATACTGTCT+CGG - chr3_3:91351001-91351020 None:intergenic 45.0%
TCTGATACTGTCTCGGTCTT+TGG - chr3_3:91350994-91351013 None:intergenic 45.0%
AAAGACCGAGACAGTATCAG+AGG + chr3_3:91350993-91351012 Msa0483290:CDS 45.0%
TGCATCCTCTGATACTGTCT+CGG - chr3_3:91351028-91351047 None:intergenic 45.0%
AAAGACCGTGACAGTATCAG+AGG + chr3_3:91351047-91351066 Msa0483290:CDS 45.0%
TGGATCCTCTGATACTGTCA+CGG - chr3_3:91351055-91351074 None:intergenic 45.0%
TGGATCCTCAGATACTGTCA+CGG - chr3_3:91351082-91351101 None:intergenic 45.0%
TGGTTCCTCAGATACTGTCT+CGG - chr3_3:91351109-91351128 None:intergenic 45.0%
CAAGATTCTGTCACGATCTC+TGG - chr3_3:91351129-91351148 None:intergenic 45.0%
CAGAGATCGTGACAGAATCT+TGG + chr3_3:91351127-91351146 Msa0483290:CDS 45.0%
!!! AAAATATTAATTTGTTTATT+GGG + chr3_3:91350581-91350600 Msa0483290:intron 5.0%
ACTATAGCTGACCGGGATGT+CGG + chr3_3:91348988-91349007 Msa0483290:exon 50.0%
AGCATTGTCAACAGGAGGCT+TGG - chr3_3:91349089-91349108 None:intergenic 50.0%
AGACTCAAAGGATTGGGTCC+TGG + chr3_3:91349508-91349527 Msa0483290:CDS 50.0%
! CAGCACTCCTAGGACTTTTC+AGG - chr3_3:91349768-91349787 None:intergenic 50.0%
GGGTGCTTGTGCTTAAGGTA+TGG - chr3_3:91350102-91350121 None:intergenic 50.0%
TGATGCCTTTGCACGAACAC+GGG - chr3_3:91350124-91350143 None:intergenic 50.0%
AGGAAGCTGGTCGCTCAATT+GGG - chr3_3:91350875-91350894 None:intergenic 50.0%
TCAGATACTGTCACGGTCTC+TGG - chr3_3:91351075-91351094 None:intergenic 50.0%
AGAGACCGTGACAGTATCTG+AGG + chr3_3:91351074-91351093 Msa0483290:CDS 50.0%
TCAGATACTGTCTCGGTCTC+TGG - chr3_3:91351102-91351121 None:intergenic 50.0%
AGAGACCGAGACAGTATCTG+AGG + chr3_3:91351101-91351120 Msa0483290:CDS 50.0%
TTCGTGTGACCAGCATTGCA+CGG + chr3_3:91351199-91351218 Msa0483290:CDS 50.0%
! GATGTCGGAGACAGCACTGA+AGG + chr3_3:91349003-91349022 Msa0483290:exon 55.0%
GAAAGGAAGAGTGAGGGCTC+TGG + chr3_3:91349049-91349068 Msa0483290:CDS 55.0%
! GAAGAGTGAGGGCTCTGGTA+AGG + chr3_3:91349054-91349073 Msa0483290:CDS 55.0%
!! CCTAGGACTTTTCAGGGCCT+TGG - chr3_3:91349761-91349780 None:intergenic 55.0%
CCAAGGCCCTGAAAAGTCCT+AGG + chr3_3:91349758-91349777 Msa0483290:CDS 55.0%
ATGCCTTTGCACGAACACGG+GGG - chr3_3:91350122-91350141 None:intergenic 55.0%
GATGCCTTTGCACGAACACG+GGG - chr3_3:91350123-91350142 None:intergenic 55.0%
CAGGAAGCTGGTCGCTCAAT+TGG - chr3_3:91350876-91350895 None:intergenic 55.0%
CTTCTCTGGACTCAGGAAGC+TGG - chr3_3:91350888-91350907 None:intergenic 55.0%
TAGGGTTCGAGCTGCTTCTC+TGG - chr3_3:91350902-91350921 None:intergenic 55.0%
AGCAGCTCGAACCCTACTTC+TGG + chr3_3:91350906-91350925 Msa0483290:CDS 55.0%
TCCTCAGATACAGTGGCTGC+TGG - chr3_3:91350970-91350989 None:intergenic 55.0%
TCGTGTGACCAGCATTGCAC+GGG + chr3_3:91351200-91351219 Msa0483290:CDS 55.0%
CAGTGCTGTCTCCGACATCC+CGG - chr3_3:91349002-91349021 None:intergenic 60.0%
!! CACGGGGGTGCTTGTGCTTA+AGG - chr3_3:91350107-91350126 None:intergenic 60.0%
CGAGCTGCTTCTCTGGACTC+AGG - chr3_3:91350895-91350914 None:intergenic 60.0%
GTGGCTGCTGGCACGAGATT+GGG - chr3_3:91350958-91350977 None:intergenic 60.0%
AGTGGCTGCTGGCACGAGAT+TGG - chr3_3:91350959-91350978 None:intergenic 60.0%
GCCAGCAGCCACTGTATCTG+AGG + chr3_3:91350966-91350985 Msa0483290:CDS 60.0%
TGTGACCAGCATTGCACGGG+AGG + chr3_3:91351203-91351222 Msa0483290:CDS 60.0%
GTGACCAGCATTGCACGGGA+GGG + chr3_3:91351204-91351223 Msa0483290:CDS 60.0%
AAGACCCTCCCGTGCAATGC+TGG - chr3_3:91351211-91351230 None:intergenic 60.0%
GCACCCCCGTGTTCGTGCAA+AGG + chr3_3:91350116-91350135 Msa0483290:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 91347255 91351239 91347255 ID=Msa0483290;Name=Msa0483290
chr3_3 mRNA 91347255 91351239 91347255 ID=Msa0483290-mRNA-1;Parent=Msa0483290;Name=Msa0483290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=266|1|0.83|1|0.8|0.66|6|0|379
chr3_3 exon 91347255 91347504 91347255 ID=Msa0483290-mRNA-1:exon:26657;Parent=Msa0483290-mRNA-1
chr3_3 exon 91348988 91349285 91348988 ID=Msa0483290-mRNA-1:exon:26658;Parent=Msa0483290-mRNA-1
chr3_3 exon 91349491 91349597 91349491 ID=Msa0483290-mRNA-1:exon:26659;Parent=Msa0483290-mRNA-1
chr3_3 exon 91349735 91349867 91349735 ID=Msa0483290-mRNA-1:exon:26660;Parent=Msa0483290-mRNA-1
chr3_3 exon 91349979 91350173 91349979 ID=Msa0483290-mRNA-1:exon:26661;Parent=Msa0483290-mRNA-1
chr3_3 exon 91350817 91351239 91350817 ID=Msa0483290-mRNA-1:exon:26662;Parent=Msa0483290-mRNA-1
chr3_3 five_prime_UTR 91347255 91347504 91347255 ID=Msa0483290-mRNA-1:five_prime_utr;Parent=Msa0483290-mRNA-1
chr3_3 five_prime_UTR 91348988 91349003 91348988 ID=Msa0483290-mRNA-1:five_prime_utr;Parent=Msa0483290-mRNA-1
chr3_3 CDS 91349004 91349285 91349004 ID=Msa0483290-mRNA-1:cds;Parent=Msa0483290-mRNA-1
chr3_3 CDS 91349491 91349597 91349491 ID=Msa0483290-mRNA-1:cds;Parent=Msa0483290-mRNA-1
chr3_3 CDS 91349735 91349867 91349735 ID=Msa0483290-mRNA-1:cds;Parent=Msa0483290-mRNA-1
chr3_3 CDS 91349979 91350173 91349979 ID=Msa0483290-mRNA-1:cds;Parent=Msa0483290-mRNA-1
chr3_3 CDS 91350817 91351239 91350817 ID=Msa0483290-mRNA-1:cds;Parent=Msa0483290-mRNA-1
Gene Sequence

>Msa0483290

ATGTCGGAGACAGCACTGAAGGATCTCAATAATATTCCTGCAACTGAAAGGAAGAGTGAGGGCTCTGGTAAGGCGTGTTTGACCAAGCCTCCTGTTGACAATGCTAATGAAAATACTGAAGAAAGTCAAAAGAAGAAAAACTGTTCCTCTTTGGTTTCCCCACATGTTAATGGAAATCAGGCCGTGCCTGCTAATTCTGTTGTAGAGATTGGAACTGTAGAAGTAGAATACATTGATTCTGAGAACTTAAATGATCTAGAAGATGTTGATGCTTGTGTCAAGACCCTCTTAGCTGGACTAGACTCAAAGGATTGGGTCCTGGTTTGTGATACTCTAAATAATGTACGCCGTTTGTCTATTTTTCATAAGGAAGCAATGCTTGATATTCTGGGGGATGTGATCACACGTATTGCCAAGGCCCTGAAAAGTCCTAGGAGTGCTGTTATCAAAACTGCCATTATGACATCTGCTGACATTTTCGGTGCATATAATGATCTTATAATAGATTCTTTGGATCCTCTGCTACTACAGCTTCTTCTCAAGTCTTCACAGGACAAACGCTTTGTATGTGAGGCAGCAGAAAAAGCCTTGATATCAATGACTACTTGTATTTCCCCTATTTCATTGCTGCCAAAATTGCAACCATACCTTAAGCACAAGCACCCCCGTGTTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACAACTGGGTGCAGAAGGCATAAATACATATGGCATTGACAAATTGATTCAAGTAGCTGCATCCCAATTGAGCGACCAGCTTCCTGAGTCCAGAGAAGCAGCTCGAACCCTACTTCTGGAGCTTCAAAACGTGTACGAGAAATTTCCCAATCTCGTGCCAGCAGCCACTGTATCTGAGGATCCAAAGACCGAGACAGTATCAGAGGATCCAAAGACCGAGACAGTATCAGAGGATGCAAAGACCGTGACAGTATCAGAGGATCCAGAGACCGTGACAGTATCTGAGGATCCAGAGACCGAGACAGTATCTGAGGAACCAGAGATCGTGACAGAATCTTGGGAAAGCTTCTGTCAGTCAAACCTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTGACCAGCATTGCACGGGAGGGTCTTGTTTCATGA

Protein sequence

>Msa0483290

MSETALKDLNNIPATERKSEGSGKACLTKPPVDNANENTEESQKKKNCSSLVSPHVNGNQAVPANSVVEIGTVEVEYIDSENLNDLEDVDACVKTLLAGLDSKDWVLVCDTLNNVRRLSIFHKEAMLDILGDVITRIAKALKSPRSAVIKTAIMTSADIFGAYNDLIIDSLDPLLLQLLLKSSQDKRFVCEAAEKALISMTTCISPISLLPKLQPYLKHKHPRVRAKASMCFSRSVPQLGAEGINTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKFPNLVPAATVSEDPKTETVSEDPKTETVSEDAKTVTVSEDPETVTVSEDPETETVSEEPEIVTESWESFCQSNLSPLSAQAVLRVTSIAREGLVS*