Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972090 | XP_013450827.1 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972090 | G7ZZX0 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0774810 | Msa0972090 | 0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0478450 | Msa0972090 | 0.816672 | 4.900785e-52 | -8.615850e-47 |
| Msa0279250 | Msa0972090 | 0.801083 | 1.064551e-48 | -8.615850e-47 |
| Msa0483290 | Msa0972090 | 0.848724 | 5.106780e-60 | -8.615850e-47 |
| Msa0934940 | Msa0972090 | 0.888502 | 5.580388e-73 | -8.615850e-47 |
| Msa0972090 | Msa1170640 | 0.846012 | 2.836213e-59 | -8.615850e-47 |
| Msa0972090 | Msa1271170 | 0.808963 | 2.391948e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972090 | MtrunA17_Chr6g0451021 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 753 |
| Msa0972090 | MtrunA17_Chr2g0295931 | 45.794 | 214 | 108 | 2 | 75 | 283 | 47 | 257 | 9.47e-56 | 184 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972090 | AT5G14790.1 | 54.427 | 384 | 123 | 8 | 1 | 379 | 1 | 337 | 1.23e-118 | 348 |
| Msa0972090 | AT3G01450.1 | 52.094 | 382 | 122 | 5 | 1 | 379 | 1 | 324 | 1.97e-113 | 334 |
| Msa0972090 | AT3G01450.2 | 52.094 | 382 | 122 | 5 | 1 | 379 | 1 | 324 | 1.97e-113 | 334 |
| Msa0972090 | AT4G15830.1 | 38.511 | 309 | 133 | 4 | 68 | 371 | 38 | 294 | 9.03e-61 | 198 |
| Msa0972090 | AT3G18530.1 | 45.487 | 277 | 141 | 5 | 1 | 276 | 1 | 268 | 1.12e-53 | 181 |
| Msa0972090 | AT3G18530.3 | 69.118 | 136 | 42 | 0 | 115 | 250 | 9 | 144 | 4.48e-51 | 172 |
| Msa0972090 | AT3G18530.2 | 67.200 | 125 | 41 | 0 | 126 | 250 | 1 | 125 | 1.63e-43 | 151 |
Find 102 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGGTATGGTTGCAATTT+TGG | 0.187233 | 6_4:-4240867 | None:intergenic |
| TGATCTTATAATAGATTCTT+TGG | 0.215909 | 6_4:+4240619 | Msa0972090:CDS |
| TCACTCTTCCTTTCAGTTGC+AGG | 0.227531 | 6_4:-4239822 | None:intergenic |
| TCTGATACTGTCTCGGTCTT+TGG | 0.273864 | 6_4:-4241801 | None:intergenic |
| CAGGAAGCTGGTCGCTCAAT+TGG | 0.275487 | 6_4:-4241683 | None:intergenic |
| TTGGTTTCCCCACATGTTAA+TGG | 0.287937 | 6_4:+4239936 | Msa0972090:CDS |
| TCTGATACTGTCACGGTCTT+TGG | 0.292621 | 6_4:-4241828 | None:intergenic |
| CATTTGCATGTGAGTGTGTA+TGG | 0.329105 | 6_4:-4238041 | None:intergenic |
| TCAGATACTGTCACGGTCTC+TGG | 0.338960 | 6_4:-4241909 | None:intergenic |
| AGTACAGCTTGAGCACTTAA+AGG | 0.343680 | 6_4:-4241987 | None:intergenic |
| GCAATTAATAGAGAGAGATT+TGG | 0.352532 | 6_4:-4238071 | None:intergenic |
| GAGAATGAAATTGAAAAGAG+TGG | 0.354836 | 6_4:-4238183 | None:intergenic |
| TCAGATACTGTCACGGTCTC+TGG | 0.360081 | 6_4:-4241882 | None:intergenic |
| TTCTCGAAGTGTTCCACAAC+TGG | 0.360569 | 6_4:+4240932 | Msa0972090:CDS |
| CAATTAATAGAGAGAGATTT+GGG | 0.365061 | 6_4:-4238070 | None:intergenic |
| TATTAAGTGGAAACGGTAAT+AGG | 0.365212 | 6_4:-4238097 | None:intergenic |
| CCCACATGTTAATGGAAATC+AGG | 0.366358 | 6_4:+4239944 | Msa0972090:CDS |
| AGCAGCTCGAACCCTACTTC+TGG | 0.366714 | 6_4:+4241716 | Msa0972090:CDS |
| CAAGATTCTGTCGCGATCTC+TGG | 0.369704 | 6_4:-4241936 | None:intergenic |
| CAGAGATCGCGACAGAATCT+TGG | 0.372783 | 6_4:+4241937 | Msa0972090:CDS |
| AATAGATTCTTTGGATCCTC+TGG | 0.383460 | 6_4:+4240628 | Msa0972090:CDS |
| AGTGGCTGCTGGCACGAGAT+TGG | 0.387556 | 6_4:-4241766 | None:intergenic |
| GCTGATTCTGTTGTAGAGAT+TGG | 0.388850 | 6_4:+4239975 | Msa0972090:CDS |
| TAGGGTTCGAGCTGCTTCTC+TGG | 0.400244 | 6_4:-4241709 | None:intergenic |
| CTCTTTCTTTCTTCACTCGT+CGG | 0.409712 | 6_4:+4238141 | Msa0972090:five_prime_UTR |
| AATCTCTCTCTATTAATTGC+CGG | 0.418374 | 6_4:+4238074 | Msa0972090:five_prime_UTR |
| GTGGCTGCTGGCACGAGATT+GGG | 0.420543 | 6_4:-4241765 | None:intergenic |
| TGTTAACAGACCCTCTTAGC+TGG | 0.450176 | 6_4:+4240264 | Msa0972090:intron |
| ACAAGTAGTCATTGATATCA+AGG | 0.452524 | 6_4:-4240823 | None:intergenic |
| CTTGAGCACTTAAAGGAGAA+AGG | 0.455045 | 6_4:-4241980 | None:intergenic |
| AAGACCCTCCCGTGCAATGC+TGG | 0.466560 | 6_4:-4242018 | None:intergenic |
| AGGAAGCTGGTCGCTCAATT+GGG | 0.467947 | 6_4:-4241682 | None:intergenic |
| AGAGATCGCGACAGAATCTT+GGG | 0.469637 | 6_4:+4241938 | Msa0972090:CDS |
| TGAAACGACGGCGTATTAAG+TGG | 0.472897 | 6_4:-4238110 | None:intergenic |
| AGCATTGTCAACAGGAGGCT+TGG | 0.476134 | 6_4:-4239868 | None:intergenic |
| CTGGACTAGACTCAAAGGAT+TGG | 0.485003 | 6_4:+4240283 | Msa0972090:CDS |
| GCAGAAGGCATAAATACATA+TGG | 0.486424 | 6_4:+4241630 | Msa0972090:CDS |
| CTTCTCTGGACTCAGGAAGC+TGG | 0.493252 | 6_4:-4241695 | None:intergenic |
| TGGACTAGACTCAAAGGATT+GGG | 0.500742 | 6_4:+4240284 | Msa0972090:CDS |
| TGATGCCTTTGCACGAACAC+GGG | 0.509631 | 6_4:-4240901 | None:intergenic |
| ATTTGCATGTGAGTGTGTAT+GGG | 0.511157 | 6_4:-4238040 | None:intergenic |
| AGACTCAAAGGATTGGGTCC+TGG | 0.512503 | 6_4:+4240290 | Msa0972090:CDS |
| TTGTTTGGATAGGGTGCAGA+AGG | 0.515020 | 6_4:+4241615 | Msa0972090:intron |
| TATCTCAGACTATAGCTGAC+CGG | 0.515438 | 6_4:+4239762 | Msa0972090:intron |
| TTGATGCCTTTGCACGAACA+CGG | 0.516013 | 6_4:-4240902 | None:intergenic |
| TTGAGTCTAGTCCAGCTAAG+AGG | 0.519140 | 6_4:-4240275 | None:intergenic |
| CCAAGGCCCTGAAAAGTCCT+AGG | 0.528718 | 6_4:+4240540 | Msa0972090:CDS |
| GCTTCTTCTCAAGTCTTCAC+AGG | 0.533896 | 6_4:+4240767 | Msa0972090:CDS |
| TGGATCCTCTGATACTGTCT+CGG | 0.534414 | 6_4:-4241808 | None:intergenic |
| GAAGAGTGAGGGCTCTGGTA+AGG | 0.534884 | 6_4:+4239836 | Msa0972090:CDS |
| TCCTCAGATACAGTGGCTGC+TGG | 0.535902 | 6_4:-4241777 | None:intergenic |
| AGAATGAAATTGAAAAGAGT+GGG | 0.539799 | 6_4:-4238182 | None:intergenic |
| CAGTGCTGTCTCCGACATCC+CGG | 0.542785 | 6_4:-4239781 | None:intergenic |
| TGTGACCAGCATTGCACGGG+AGG | 0.542793 | 6_4:+4242013 | Msa0972090:CDS |
| GGGTGCTTGTGCTTAAGGTA+TGG | 0.543193 | 6_4:-4240879 | None:intergenic |
| TTCGTGTGACCAGCATTGCA+CGG | 0.548504 | 6_4:+4242009 | Msa0972090:CDS |
| TGAGTCTAGTCCAGCTAAGA+GGG | 0.551003 | 6_4:-4240274 | None:intergenic |
| ATCTCAGACTATAGCTGACC+GGG | 0.551091 | 6_4:+4239763 | Msa0972090:intron |
| ATAATATTCCTGCAACTGAA+AGG | 0.555415 | 6_4:+4239814 | Msa0972090:CDS |
| GAAAGGAAGAGTGAGGGCTC+TGG | 0.555889 | 6_4:+4239831 | Msa0972090:CDS |
| AAAGGTACTCATACCAGTTG+TGG | 0.558875 | 6_4:-4240945 | None:intergenic |
| GTGAAGAAAGAAAGAGACAA+AGG | 0.560248 | 6_4:-4238134 | None:intergenic |
| GCCTGATTTCCATTAACATG+TGG | 0.560884 | 6_4:-4239945 | None:intergenic |
| CGAGCTGCTTCTCTGGACTC+AGG | 0.564410 | 6_4:-4241702 | None:intergenic |
| ACTATAGCTGACCGGGATGT+CGG | 0.573760 | 6_4:+4239770 | Msa0972090:exon |
| TCGTGTGACCAGCATTGCAC+GGG | 0.575627 | 6_4:+4242010 | Msa0972090:CDS |
| ATCTCTACAACAGAATCAGC+AGG | 0.577215 | 6_4:-4239972 | None:intergenic |
| AAGTGGAAACGGTAATAGGC+CGG | 0.580584 | 6_4:-4238093 | None:intergenic |
| TCATTAGCATTGTCAACAGG+AGG | 0.580927 | 6_4:-4239873 | None:intergenic |
| TGCATCCTCTGATACTGTCA+CGG | 0.582025 | 6_4:-4241835 | None:intergenic |
| CCTGATTTCCATTAACATGT+GGG | 0.582748 | 6_4:-4239944 | None:intergenic |
| GATGTCGGAGACAGCACTGA+AGG | 0.584563 | 6_4:+4239785 | Msa0972090:exon |
| AATGTCAGCAGATGTCATAA+TGG | 0.592994 | 6_4:-4240582 | None:intergenic |
| GCCAGCAGCCACTGTATCTG+AGG | 0.601163 | 6_4:+4241776 | Msa0972090:CDS |
| CTTAGCTGGACTAGACTCAA+AGG | 0.601990 | 6_4:+4240278 | Msa0972090:CDS |
| GACGGCGTATTAAGTGGAAA+CGG | 0.603726 | 6_4:-4238104 | None:intergenic |
| GATGCCTTTGCACGAACACG+GGG | 0.604224 | 6_4:-4240900 | None:intergenic |
| TGGATCCTCTGATACTGTCA+CGG | 0.608295 | 6_4:-4241862 | None:intergenic |
| GTGACCAGCATTGCACGGGA+GGG | 0.615180 | 6_4:+4242014 | Msa0972090:CDS |
| TTTGCATGTGAGTGTGTATG+GGG | 0.616888 | 6_4:-4238039 | None:intergenic |
| CTGATTTCCATTAACATGTG+GGG | 0.618242 | 6_4:-4239943 | None:intergenic |
| TGCAACTGAAAGGAAGAGTG+AGG | 0.618257 | 6_4:+4239824 | Msa0972090:CDS |
| AACATGTGGGGAAACCAAAG+AGG | 0.636905 | 6_4:-4239931 | None:intergenic |
| TGTGATCACACGTATTGCCA+AGG | 0.639205 | 6_4:+4240523 | Msa0972090:CDS |
| TACAACAGAATCAGCAGGCA+CGG | 0.640260 | 6_4:-4239967 | None:intergenic |
| GGACAAACGCTTTGTATGTG+AGG | 0.643274 | 6_4:+4240788 | Msa0972090:CDS |
| GCAACTGAAAGGAAGAGTGA+GGG | 0.647825 | 6_4:+4239825 | Msa0972090:CDS |
| TGGTTCCTCAGATACTGTCA+CGG | 0.648009 | 6_4:-4241916 | None:intergenic |
| TATTTAGAGTATCACAAACC+AGG | 0.649406 | 6_4:-4240308 | None:intergenic |
| CTTTGGATCCTCAGATACAG+TGG | 0.658342 | 6_4:-4241784 | None:intergenic |
| AGATGAAGAATGAGTCAACT+CGG | 0.659280 | 6_4:-4238216 | None:intergenic |
| AAAGACCGAGACAGTATCAG+AGG | 0.660252 | 6_4:+4241803 | Msa0972090:CDS |
| TGGATCCTCAGATACTGTCA+CGG | 0.660853 | 6_4:-4241889 | None:intergenic |
| AAAGACCGTGACAGTATCAG+AGG | 0.663328 | 6_4:+4241830 | Msa0972090:CDS |
| AGAGACCGTGACAGTATCTG+AGG | 0.663328 | 6_4:+4241884 | Msa0972090:CDS |
| AAATGTTGATGCTTGTGTCA+AGG | 0.672297 | 6_4:+4240046 | Msa0972090:CDS |
| AGAGACCGTGACAGTATCTG+AGG | 0.675746 | 6_4:+4241911 | Msa0972090:CDS |
| AAAGACCGTGACAGTATCAG+AGG | 0.679340 | 6_4:+4241857 | Msa0972090:CDS |
| AGTACCGAATGAAGAAAATG+CGG | 0.683323 | 6_4:-4238265 | None:intergenic |
| AGAGACAAAGGATGAAACGA+CGG | 0.693825 | 6_4:-4238122 | None:intergenic |
| TTGCATGTGAGTGTGTATGG+GGG | 0.755086 | 6_4:-4238038 | None:intergenic |
| ATGCCTTTGCACGAACACGG+GGG | 0.759816 | 6_4:-4240899 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTAGAATTTTGT+TGG | + | chr6_4:4238888-4238907 | Msa0972090:intron | 10.0% |
| !!! | AATTTTTTTAGAATTTTGTT+GGG | + | chr6_4:4238889-4238908 | Msa0972090:intron | 10.0% |
| !!! | TAAACAAATTAATATTTTCA+GGG | - | chr6_4:4241389-4241408 | None:intergenic | 10.0% |
| !!! | ATAAACAAATTAATATTTTC+AGG | - | chr6_4:4241390-4241409 | None:intergenic | 10.0% |
| !!! | GAAAATATTAATTTGTTTAT+TGG | + | chr6_4:4241390-4241409 | Msa0972090:intron | 10.0% |
| !! | CAGAAAATAAATCAAAAAAT+TGG | - | chr6_4:4238728-4238747 | None:intergenic | 15.0% |
| !!! | TAAAATAATTTTTTGCTCTA+TGG | + | chr6_4:4239557-4239576 | Msa0972090:intron | 15.0% |
| !!! | TTTTACAGAAGTTAAATAAA+TGG | + | chr6_4:4239690-4239709 | Msa0972090:intron | 15.0% |
| !!! | ATTATTTTATCCATCTTTTT+TGG | + | chr6_4:4240070-4240089 | Msa0972090:intron | 15.0% |
| !!! | TTATTTTATCCATCTTTTTT+GGG | + | chr6_4:4240071-4240090 | Msa0972090:intron | 15.0% |
| !! | TATATAAAGCTAATAATCAA+AGG | - | chr6_4:4240192-4240211 | None:intergenic | 15.0% |
| !! | TAAATTATTCATATGCTATA+TGG | + | chr6_4:4240487-4240506 | Msa0972090:intron | 15.0% |
| !! | AAAACAAACGTAAAAAATTA+TGG | - | chr6_4:4241152-4241171 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTACGTTTGTTT+TGG | + | chr6_4:4241151-4241170 | Msa0972090:intron | 15.0% |
| !!! | TGAATTTTTGTGAATATTTG+TGG | + | chr6_4:4238529-4238548 | Msa0972090:intron | 20.0% |
| !! | AATCAAATGATTGTAATGTT+AGG | + | chr6_4:4238755-4238774 | Msa0972090:intron | 20.0% |
| !! | ATTGTAATTTGAAGAGATAT+TGG | + | chr6_4:4239513-4239532 | Msa0972090:intron | 20.0% |
| !!! | TTTTAAGTTCTAAACATTTC+TGG | - | chr6_4:4239542-4239561 | None:intergenic | 20.0% |
| !! | TGATCTTATAATAGATTCTT+TGG | + | chr6_4:4240619-4240638 | Msa0972090:CDS | 20.0% |
| !! | TTGCAAATTTAATAGTACAA+AGG | - | chr6_4:4240669-4240688 | None:intergenic | 20.0% |
| !! | GAAGCTTTCTTAAATAATTT+GGG | - | chr6_4:4241211-4241230 | None:intergenic | 20.0% |
| !! | AGAAGCTTTCTTAAATAATT+TGG | - | chr6_4:4241212-4241231 | None:intergenic | 20.0% |
| !!! | CAATGATTTTAATTGATACA+TGG | + | chr6_4:4241357-4241376 | Msa0972090:intron | 20.0% |
| !! | TAAACTGCTAGTATTAATAT+TGG | + | chr6_4:4241451-4241470 | Msa0972090:intron | 20.0% |
| ! | CAATTAATAGAGAGAGATTT+GGG | - | chr6_4:4238073-4238092 | None:intergenic | 25.0% |
| ! | AGAATGAAATTGAAAAGAGT+GGG | - | chr6_4:4238185-4238204 | None:intergenic | 25.0% |
| ! | AATCGAATGATTGTAATGTT+AGG | + | chr6_4:4238558-4238577 | Msa0972090:intron | 25.0% |
| !! | TGATTGTAATGTTAGGTTTT+AGG | + | chr6_4:4238565-4238584 | Msa0972090:intron | 25.0% |
| !!! | TTGATTTTTGAGTTGAACTT+TGG | + | chr6_4:4238681-4238700 | Msa0972090:intron | 25.0% |
| ! | TGATTGTAATGTTAGGATTT+AGG | + | chr6_4:4238762-4238781 | Msa0972090:intron | 25.0% |
| !! | GATTTAGGATTGAAATGTAA+GGG | + | chr6_4:4238777-4238796 | Msa0972090:intron | 25.0% |
| !! | GATATCTTAGATTTAGAACT+AGG | + | chr6_4:4239205-4239224 | Msa0972090:intron | 25.0% |
| ! | AAAAACAAAAAATGATCTGC+TGG | - | chr6_4:4239286-4239305 | None:intergenic | 25.0% |
| !!! | AGCAGATCATTTTTTGTTTT+TGG | + | chr6_4:4239285-4239304 | Msa0972090:intron | 25.0% |
| !!! | TTAGAGTGTTGTATTTGAAA+TGG | + | chr6_4:4239363-4239382 | Msa0972090:intron | 25.0% |
| ! | AATAAATCGAATTGAGAACT+AGG | + | chr6_4:4239468-4239487 | Msa0972090:intron | 25.0% |
| ! | TACAGAAGTTAAATAAATGG+TGG | + | chr6_4:4239693-4239712 | Msa0972090:intron | 25.0% |
| !!! | AAGTTGATAACCATTGAAAT+TGG | + | chr6_4:4240117-4240136 | Msa0972090:intron | 25.0% |
| !!! | TGACATAAAATAGGTATTGA+AGG | - | chr6_4:4240220-4240239 | None:intergenic | 25.0% |
| ! | TAACGATACTGACATAAAAT+AGG | - | chr6_4:4240229-4240248 | None:intergenic | 25.0% |
| ! | CCTTATGAAAAATAGACAAA+CGG | - | chr6_4:4240341-4240360 | None:intergenic | 25.0% |
| !! | AATGTTTTCTGATTGAAAGA+TGG | + | chr6_4:4240403-4240422 | Msa0972090:intron | 25.0% |
| !! | AATATGCAATGGTTTTTGTT+TGG | + | chr6_4:4240451-4240470 | Msa0972090:intron | 25.0% |
| ! | CAAATTTAATAGTACAAAGG+AGG | - | chr6_4:4240666-4240685 | None:intergenic | 25.0% |
| ! | GTAAATTGACATGTTCTTAA+TGG | + | chr6_4:4240727-4240746 | Msa0972090:intron | 25.0% |
| !!! | TAATTGGCTTCCTAAAATTT+TGG | - | chr6_4:4241086-4241105 | None:intergenic | 25.0% |
| ! | GTCTATGTTAAATTTGTGAA+TGG | + | chr6_4:4241235-4241254 | Msa0972090:intron | 25.0% |
| !!! | CTATTTGATTTTGCTATGTT+AGG | - | chr6_4:4241309-4241328 | None:intergenic | 25.0% |
| ! | ACATAGCAAAATCAAATAGA+AGG | + | chr6_4:4241310-4241329 | Msa0972090:intron | 25.0% |
| !! | TTAACATCTTCTCTTTTGTT+TGG | + | chr6_4:4241600-4241619 | Msa0972090:intron | 25.0% |
| GCAATTAATAGAGAGAGATT+TGG | - | chr6_4:4238074-4238093 | None:intergenic | 30.0% | |
| AATCTCTCTCTATTAATTGC+CGG | + | chr6_4:4238074-4238093 | Msa0972090:five_prime_UTR | 30.0% | |
| TATTAAGTGGAAACGGTAAT+AGG | - | chr6_4:4238100-4238119 | None:intergenic | 30.0% | |
| GAGAATGAAATTGAAAAGAG+TGG | - | chr6_4:4238186-4238205 | None:intergenic | 30.0% | |
| ! | GGATTTAGGATTGAAATGTA+AGG | + | chr6_4:4238776-4238795 | Msa0972090:intron | 30.0% |
| AGTACAAAATCAAAGCAACT+AGG | - | chr6_4:4238931-4238950 | None:intergenic | 30.0% | |
| !! | TGAAAGTTCAGTTCTAAGAT+TGG | + | chr6_4:4239116-4239135 | Msa0972090:intron | 30.0% |
| !!! | GTTGCAATCATTGATTTTCT+TGG | + | chr6_4:4239150-4239169 | Msa0972090:intron | 30.0% |
| ! | ATGGTAGTGTAATTGTGATT+TGG | + | chr6_4:4239239-4239258 | Msa0972090:intron | 30.0% |
| !! | AATTGTGATTTGGTGAGATA+TGG | + | chr6_4:4239249-4239268 | Msa0972090:intron | 30.0% |
| !!! | TTTGCAGTAGTTGTTTTTCT+TGG | + | chr6_4:4239414-4239433 | Msa0972090:intron | 30.0% |
| ! | GCTATAGTCTGAGATAAAAA+AGG | - | chr6_4:4239758-4239777 | None:intergenic | 30.0% |
| ATAATATTCCTGCAACTGAA+AGG | + | chr6_4:4239814-4239833 | Msa0972090:CDS | 30.0% | |
| ! | TTTTCATTAGCATTGTCAAC+AGG | - | chr6_4:4239879-4239898 | None:intergenic | 30.0% |
| ! | TATTTAGAGTATCACAAACC+AGG | - | chr6_4:4240311-4240330 | None:intergenic | 30.0% |
| !! | CCGTTTGTCTATTTTTCATA+AGG | + | chr6_4:4240338-4240357 | Msa0972090:CDS | 30.0% |
| TACCATTGCTTAATATGCAA+TGG | + | chr6_4:4240440-4240459 | Msa0972090:intron | 30.0% | |
| AACCATTGCATATTAAGCAA+TGG | - | chr6_4:4240445-4240464 | None:intergenic | 30.0% | |
| TCATATGCTATATGGTAAAC+AGG | + | chr6_4:4240495-4240514 | Msa0972090:intron | 30.0% | |
| CATATGCTATATGGTAAACA+GGG | + | chr6_4:4240496-4240515 | Msa0972090:intron | 30.0% | |
| ATATGCTATATGGTAAACAG+GGG | + | chr6_4:4240497-4240516 | Msa0972090:intron | 30.0% | |
| AATTGACATGTTCTTAATGG+TGG | + | chr6_4:4240730-4240749 | Msa0972090:intron | 30.0% | |
| ACAAGTAGTCATTGATATCA+AGG | - | chr6_4:4240826-4240845 | None:intergenic | 30.0% | |
| !! | ATTTTGGCAGCAATGAAATA+GGG | - | chr6_4:4240854-4240873 | None:intergenic | 30.0% |
| !! | AATTTTGGCAGCAATGAAAT+AGG | - | chr6_4:4240855-4240874 | None:intergenic | 30.0% |
| ! | TTAAGGTATGGTTGCAATTT+TGG | - | chr6_4:4240870-4240889 | None:intergenic | 30.0% |
| AAGAAGAGCAAAAGTCATAA+AGG | - | chr6_4:4240966-4240985 | None:intergenic | 30.0% | |
| ATCACAGAAAATCATTTCGT+GGG | - | chr6_4:4241042-4241061 | None:intergenic | 30.0% | |
| TTATGGAATTTCATCATCAG+TGG | - | chr6_4:4241135-4241154 | None:intergenic | 30.0% | |
| !! | ATATCTGTTTTGTTCTACCA+TGG | + | chr6_4:4241478-4241497 | Msa0972090:intron | 30.0% |
| TGCTCTGCTAGTATTAATAT+TGG | + | chr6_4:4241503-4241522 | Msa0972090:intron | 30.0% | |
| GCTAGGAAGGTTAATAAATA+TGG | + | chr6_4:4241546-4241565 | Msa0972090:intron | 30.0% | |
| !! | ATCTTCTCTTTTGTTTGGAT+AGG | + | chr6_4:4241605-4241624 | Msa0972090:intron | 30.0% |
| !! | TCTTCTCTTTTGTTTGGATA+GGG | + | chr6_4:4241606-4241625 | Msa0972090:intron | 30.0% |
| ATTTGCATGTGAGTGTGTAT+GGG | - | chr6_4:4238043-4238062 | None:intergenic | 35.0% | |
| GTGAAGAAAGAAAGAGACAA+AGG | - | chr6_4:4238137-4238156 | None:intergenic | 35.0% | |
| AGATGAAGAATGAGTCAACT+CGG | - | chr6_4:4238219-4238238 | None:intergenic | 35.0% | |
| ! | TTCTCCGCATTTTCTTCATT+CGG | + | chr6_4:4238261-4238280 | Msa0972090:five_prime_UTR | 35.0% |
| ! | AGTACCGAATGAAGAAAATG+CGG | - | chr6_4:4238268-4238287 | None:intergenic | 35.0% |
| AGTGATTACAGTGAATCGTA+CGG | - | chr6_4:4238344-4238363 | None:intergenic | 35.0% | |
| AAATTGGCACAGTAATCACA+CGG | - | chr6_4:4238712-4238731 | None:intergenic | 35.0% | |
| GAACTAGGAAATTAGAGCAA+TGG | + | chr6_4:4239220-4239239 | Msa0972090:intron | 35.0% | |
| GAAATGGAAGTTCAGTTCTA+AGG | + | chr6_4:4239379-4239398 | Msa0972090:intron | 35.0% | |
| GAACTAGGAAATAAGAGCAA+TGG | + | chr6_4:4239483-4239502 | Msa0972090:intron | 35.0% | |
| GAAGAAAAACTGTTCCTCTT+TGG | + | chr6_4:4239917-4239936 | Msa0972090:CDS | 35.0% | |
| CTGATTTCCATTAACATGTG+GGG | - | chr6_4:4239946-4239965 | None:intergenic | 35.0% | |
| CCTGATTTCCATTAACATGT+GGG | - | chr6_4:4239947-4239966 | None:intergenic | 35.0% | |
| AAATGTTGATGCTTGTGTCA+AGG | + | chr6_4:4240046-4240065 | Msa0972090:CDS | 35.0% | |
| !!! | TATCCATCTTTTTTGGGTAG+AGG | + | chr6_4:4240077-4240096 | Msa0972090:intron | 35.0% |
| !!! | ATCCATCTTTTTTGGGTAGA+GGG | + | chr6_4:4240078-4240097 | Msa0972090:intron | 35.0% |
| GATAACCATTGAAATTGGTG+TGG | + | chr6_4:4240122-4240141 | Msa0972090:intron | 35.0% | |
| TTGAACCACACCAATTTCAA+TGG | - | chr6_4:4240130-4240149 | None:intergenic | 35.0% | |
| GAATTTAATGAAACACCCCA+AGG | - | chr6_4:4240155-4240174 | None:intergenic | 35.0% | |
| TATGCTATATGGTAAACAGG+GGG | + | chr6_4:4240498-4240517 | Msa0972090:intron | 35.0% | |
| AATGTCAGCAGATGTCATAA+TGG | - | chr6_4:4240585-4240604 | None:intergenic | 35.0% | |
| ! | ATGACATCTGCTGACATTTT+CGG | + | chr6_4:4240587-4240606 | Msa0972090:CDS | 35.0% |
| AATAGATTCTTTGGATCCTC+TGG | + | chr6_4:4240628-4240647 | Msa0972090:CDS | 35.0% | |
| GTAATCTCAGAATACACTTG+TGG | + | chr6_4:4240702-4240721 | Msa0972090:intron | 35.0% | |
| ! | TTTTGGCAGCAATGAAATAG+GGG | - | chr6_4:4240853-4240872 | None:intergenic | 35.0% |
| CATCACAGAAAATCATTTCG+TGG | - | chr6_4:4241043-4241062 | None:intergenic | 35.0% | |
| ! | CACGAAATGATTTTCTGTGA+TGG | + | chr6_4:4241041-4241060 | Msa0972090:intron | 35.0% |
| ! | AGCGACGAAACCAAAATTTT+AGG | + | chr6_4:4241073-4241092 | Msa0972090:intron | 35.0% |
| TCTTTGCCTGCATCATTAAT+TGG | - | chr6_4:4241102-4241121 | None:intergenic | 35.0% | |
| ! | TGTTTATTGGGAGCATGTAT+TGG | + | chr6_4:4241403-4241422 | Msa0972090:intron | 35.0% |
| TATATCTGTTCTGTTCAGCT+AGG | + | chr6_4:4241529-4241548 | Msa0972090:intron | 35.0% | |
| ! | GCAGAAGGCATAAATACATA+TGG | + | chr6_4:4241630-4241649 | Msa0972090:CDS | 35.0% |
| TTTGCATGTGAGTGTGTATG+GGG | - | chr6_4:4238042-4238061 | None:intergenic | 40.0% | |
| CATTTGCATGTGAGTGTGTA+TGG | - | chr6_4:4238044-4238063 | None:intergenic | 40.0% | |
| AGAGACAAAGGATGAAACGA+CGG | - | chr6_4:4238125-4238144 | None:intergenic | 40.0% | |
| CTCTTTCTTTCTTCACTCGT+CGG | + | chr6_4:4238141-4238160 | Msa0972090:five_prime_UTR | 40.0% | |
| ! | GCAGTGATTTGAAGTGTATC+TGG | + | chr6_4:4239073-4239092 | Msa0972090:intron | 40.0% |
| !! | AAAAATGATCTGCTGGCTCA+TGG | - | chr6_4:4239279-4239298 | None:intergenic | 40.0% |
| !! | TGGAAGTTCAGTTCTAAGGT+TGG | + | chr6_4:4239383-4239402 | Msa0972090:intron | 40.0% |
| !! | TTCAGTTCTAAGGTTGGAGT+TGG | + | chr6_4:4239389-4239408 | Msa0972090:intron | 40.0% |
| ! | GTTTGAGTTTCTCTTCTTGC+CGG | + | chr6_4:4239715-4239734 | Msa0972090:intron | 40.0% |
| ! | TTTGAGTTTCTCTTCTTGCC+GGG | + | chr6_4:4239716-4239735 | Msa0972090:intron | 40.0% |
| TATCTCAGACTATAGCTGAC+CGG | + | chr6_4:4239762-4239781 | Msa0972090:intron | 40.0% | |
| TCATTAGCATTGTCAACAGG+AGG | - | chr6_4:4239876-4239895 | None:intergenic | 40.0% | |
| TTGGTTTCCCCACATGTTAA+TGG | + | chr6_4:4239936-4239955 | Msa0972090:CDS | 40.0% | |
| CCCACATGTTAATGGAAATC+AGG | + | chr6_4:4239944-4239963 | Msa0972090:CDS | 40.0% | |
| GCCTGATTTCCATTAACATG+TGG | - | chr6_4:4239948-4239967 | None:intergenic | 40.0% | |
| ATCTCTACAACAGAATCAGC+AGG | - | chr6_4:4239975-4239994 | None:intergenic | 40.0% | |
| ! | GCTGATTCTGTTGTAGAGAT+TGG | + | chr6_4:4239975-4239994 | Msa0972090:CDS | 40.0% |
| ATTGGTGTGGTTCAATACCT+TGG | + | chr6_4:4240135-4240154 | Msa0972090:intron | 40.0% | |
| TTGGTGTGGTTCAATACCTT+GGG | + | chr6_4:4240136-4240155 | Msa0972090:intron | 40.0% | |
| ! | TGGACTAGACTCAAAGGATT+GGG | + | chr6_4:4240284-4240303 | Msa0972090:CDS | 40.0% |
| ATGCTATATGGTAAACAGGG+GGG | + | chr6_4:4240499-4240518 | Msa0972090:intron | 40.0% | |
| !! | GTTTTGATAACAGCACTCCT+AGG | - | chr6_4:4240560-4240579 | None:intergenic | 40.0% |
| GAGGAATTCTAACTTACCAG+AGG | - | chr6_4:4240647-4240666 | None:intergenic | 40.0% | |
| !! | AAAGGTACTCATACCAGTTG+TGG | - | chr6_4:4240948-4240967 | None:intergenic | 40.0% |
| AGGAAGCCAATTAATGATGC+AGG | + | chr6_4:4241093-4241112 | Msa0972090:intron | 40.0% | |
| GGAGCATGTATTGGATTTCT+AGG | + | chr6_4:4241412-4241431 | Msa0972090:intron | 40.0% | |
| ! | AATACTAGCAGAGCATTCCA+TGG | - | chr6_4:4241498-4241517 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGCTCCAGAAGTA+GGG | - | chr6_4:4241730-4241749 | None:intergenic | 40.0% |
| CTTGAGCACTTAAAGGAGAA+AGG | - | chr6_4:4241983-4242002 | None:intergenic | 40.0% | |
| AGTACAGCTTGAGCACTTAA+AGG | - | chr6_4:4241990-4242009 | None:intergenic | 40.0% | |
| TTGCATGTGAGTGTGTATGG+GGG | - | chr6_4:4238041-4238060 | None:intergenic | 45.0% | |
| AAGTGGAAACGGTAATAGGC+CGG | - | chr6_4:4238096-4238115 | None:intergenic | 45.0% | |
| GACGGCGTATTAAGTGGAAA+CGG | - | chr6_4:4238107-4238126 | None:intergenic | 45.0% | |
| TGAAACGACGGCGTATTAAG+TGG | - | chr6_4:4238113-4238132 | None:intergenic | 45.0% | |
| GGCAGACAGACAATTAAACC+CGG | - | chr6_4:4239737-4239756 | None:intergenic | 45.0% | |
| ATCTCAGACTATAGCTGACC+GGG | + | chr6_4:4239763-4239782 | Msa0972090:intron | 45.0% | |
| TCACTCTTCCTTTCAGTTGC+AGG | - | chr6_4:4239825-4239844 | None:intergenic | 45.0% | |
| TGCAACTGAAAGGAAGAGTG+AGG | + | chr6_4:4239824-4239843 | Msa0972090:CDS | 45.0% | |
| GCAACTGAAAGGAAGAGTGA+GGG | + | chr6_4:4239825-4239844 | Msa0972090:CDS | 45.0% | |
| AACATGTGGGGAAACCAAAG+AGG | - | chr6_4:4239934-4239953 | None:intergenic | 45.0% | |
| TACAACAGAATCAGCAGGCA+CGG | - | chr6_4:4239970-4239989 | None:intergenic | 45.0% | |
| GTCCCTCTACCCAAAAAAGA+TGG | - | chr6_4:4240083-4240102 | None:intergenic | 45.0% | |
| !! | TTTTGGGTAGAGGGACTAGA+TGG | + | chr6_4:4240087-4240106 | Msa0972090:intron | 45.0% |
| TTTGGGTAGAGGGACTAGAT+GGG | + | chr6_4:4240088-4240107 | Msa0972090:intron | 45.0% | |
| TGGTGTGGTTCAATACCTTG+GGG | + | chr6_4:4240137-4240156 | Msa0972090:intron | 45.0% | |
| TGTTAACAGACCCTCTTAGC+TGG | + | chr6_4:4240264-4240283 | Msa0972090:intron | 45.0% | |
| TGAGTCTAGTCCAGCTAAGA+GGG | - | chr6_4:4240277-4240296 | None:intergenic | 45.0% | |
| TTGAGTCTAGTCCAGCTAAG+AGG | - | chr6_4:4240278-4240297 | None:intergenic | 45.0% | |
| ! | CTTAGCTGGACTAGACTCAA+AGG | + | chr6_4:4240278-4240297 | Msa0972090:CDS | 45.0% |
| ! | CTGGACTAGACTCAAAGGAT+TGG | + | chr6_4:4240283-4240302 | Msa0972090:CDS | 45.0% |
| TGTGATCACACGTATTGCCA+AGG | + | chr6_4:4240523-4240542 | Msa0972090:CDS | 45.0% | |
| ! | AGCACTCCTAGGACTTTTCA+GGG | - | chr6_4:4240549-4240568 | None:intergenic | 45.0% |
| GCTTCTTCTCAAGTCTTCAC+AGG | + | chr6_4:4240767-4240786 | Msa0972090:CDS | 45.0% | |
| GGACAAACGCTTTGTATGTG+AGG | + | chr6_4:4240788-4240807 | Msa0972090:CDS | 45.0% | |
| TTGATGCCTTTGCACGAACA+CGG | - | chr6_4:4240905-4240924 | None:intergenic | 45.0% | |
| ! | TTCTCGAAGTGTTCCACAAC+TGG | + | chr6_4:4240932-4240951 | Msa0972090:CDS | 45.0% |
| ATGATGCAGGCAAAGAACCT+TGG | + | chr6_4:4241106-4241125 | Msa0972090:intron | 45.0% | |
| TTCATCATCAGTGGTGACCA+AGG | - | chr6_4:4241126-4241145 | None:intergenic | 45.0% | |
| TCTGTTCTGTTCAGCTAGGA+AGG | + | chr6_4:4241533-4241552 | Msa0972090:intron | 45.0% | |
| ATTCAGTCGCAAACATAGGC+TGG | - | chr6_4:4241572-4241591 | None:intergenic | 45.0% | |
| CCACATTCAGTCGCAAACAT+AGG | - | chr6_4:4241576-4241595 | None:intergenic | 45.0% | |
| CCTATGTTTGCGACTGAATG+TGG | + | chr6_4:4241573-4241592 | Msa0972090:intron | 45.0% | |
| TTGTTTGGATAGGGTGCAGA+AGG | + | chr6_4:4241615-4241634 | Msa0972090:intron | 45.0% | |
| !!! | CGTTTTGAAGCTCCAGAAGT+AGG | - | chr6_4:4241731-4241750 | None:intergenic | 45.0% |
| CTTTGGATCCTCAGATACAG+TGG | - | chr6_4:4241787-4241806 | None:intergenic | 45.0% | |
| TCTGATACTGTCTCGGTCTT+TGG | - | chr6_4:4241804-4241823 | None:intergenic | 45.0% | |
| AAAGACCGAGACAGTATCAG+AGG | + | chr6_4:4241803-4241822 | Msa0972090:CDS | 45.0% | |
| TGGATCCTCTGATACTGTCT+CGG | - | chr6_4:4241811-4241830 | None:intergenic | 45.0% | |
| TCTGATACTGTCACGGTCTT+TGG | - | chr6_4:4241831-4241850 | None:intergenic | 45.0% | |
| AAAGACCGTGACAGTATCAG+AGG | + | chr6_4:4241830-4241849 | Msa0972090:CDS | 45.0% | |
| TGCATCCTCTGATACTGTCA+CGG | - | chr6_4:4241838-4241857 | None:intergenic | 45.0% | |
| AAAGACCGTGACAGTATCAG+AGG | + | chr6_4:4241830-4241849 | Msa0972090:CDS | 45.0% | |
| TGGATCCTCTGATACTGTCA+CGG | - | chr6_4:4241865-4241884 | None:intergenic | 45.0% | |
| TGGATCCTCAGATACTGTCA+CGG | - | chr6_4:4241892-4241911 | None:intergenic | 45.0% | |
| TGGTTCCTCAGATACTGTCA+CGG | - | chr6_4:4241919-4241938 | None:intergenic | 45.0% | |
| AGAGATCGCGACAGAATCTT+GGG | + | chr6_4:4241938-4241957 | Msa0972090:CDS | 45.0% | |
| !!! | AAAATATTAATTTGTTTATT+GGG | + | chr6_4:4241391-4241410 | Msa0972090:intron | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+CGG | - | chr6_4:4238304-4238323 | None:intergenic | 50.0% | |
| ACTATAGCTGACCGGGATGT+CGG | + | chr6_4:4239770-4239789 | Msa0972090:exon | 50.0% | |
| AGCATTGTCAACAGGAGGCT+TGG | - | chr6_4:4239871-4239890 | None:intergenic | 50.0% | |
| AGACTCAAAGGATTGGGTCC+TGG | + | chr6_4:4240290-4240309 | Msa0972090:CDS | 50.0% | |
| ! | CAGCACTCCTAGGACTTTTC+AGG | - | chr6_4:4240550-4240569 | None:intergenic | 50.0% |
| GGGTGCTTGTGCTTAAGGTA+TGG | - | chr6_4:4240882-4240901 | None:intergenic | 50.0% | |
| TGATGCCTTTGCACGAACAC+GGG | - | chr6_4:4240904-4240923 | None:intergenic | 50.0% | |
| AGGAAGCTGGTCGCTCAATT+GGG | - | chr6_4:4241685-4241704 | None:intergenic | 50.0% | |
| TCAGATACTGTCACGGTCTC+TGG | - | chr6_4:4241885-4241904 | None:intergenic | 50.0% | |
| AGAGACCGTGACAGTATCTG+AGG | + | chr6_4:4241884-4241903 | Msa0972090:CDS | 50.0% | |
| TCAGATACTGTCACGGTCTC+TGG | - | chr6_4:4241885-4241904 | None:intergenic | 50.0% | |
| AGAGACCGTGACAGTATCTG+AGG | + | chr6_4:4241884-4241903 | Msa0972090:CDS | 50.0% | |
| CAAGATTCTGTCGCGATCTC+TGG | - | chr6_4:4241939-4241958 | None:intergenic | 50.0% | |
| CAGAGATCGCGACAGAATCT+TGG | + | chr6_4:4241937-4241956 | Msa0972090:CDS | 50.0% | |
| TTCGTGTGACCAGCATTGCA+CGG | + | chr6_4:4242009-4242028 | Msa0972090:CDS | 50.0% | |
| GAGAGAGAGAGAGAGAGAGC+GGG | - | chr6_4:4238303-4238322 | None:intergenic | 55.0% | |
| ! | GATGTCGGAGACAGCACTGA+AGG | + | chr6_4:4239785-4239804 | Msa0972090:exon | 55.0% |
| GAAAGGAAGAGTGAGGGCTC+TGG | + | chr6_4:4239831-4239850 | Msa0972090:CDS | 55.0% | |
| ! | GAAGAGTGAGGGCTCTGGTA+AGG | + | chr6_4:4239836-4239855 | Msa0972090:CDS | 55.0% |
| !! | CCTAGGACTTTTCAGGGCCT+TGG | - | chr6_4:4240543-4240562 | None:intergenic | 55.0% |
| CCAAGGCCCTGAAAAGTCCT+AGG | + | chr6_4:4240540-4240559 | Msa0972090:CDS | 55.0% | |
| ATGCCTTTGCACGAACACGG+GGG | - | chr6_4:4240902-4240921 | None:intergenic | 55.0% | |
| GATGCCTTTGCACGAACACG+GGG | - | chr6_4:4240903-4240922 | None:intergenic | 55.0% | |
| CAGGAAGCTGGTCGCTCAAT+TGG | - | chr6_4:4241686-4241705 | None:intergenic | 55.0% | |
| CTTCTCTGGACTCAGGAAGC+TGG | - | chr6_4:4241698-4241717 | None:intergenic | 55.0% | |
| TAGGGTTCGAGCTGCTTCTC+TGG | - | chr6_4:4241712-4241731 | None:intergenic | 55.0% | |
| AGCAGCTCGAACCCTACTTC+TGG | + | chr6_4:4241716-4241735 | Msa0972090:CDS | 55.0% | |
| TCCTCAGATACAGTGGCTGC+TGG | - | chr6_4:4241780-4241799 | None:intergenic | 55.0% | |
| TCGTGTGACCAGCATTGCAC+GGG | + | chr6_4:4242010-4242029 | Msa0972090:CDS | 55.0% | |
| GAGAGAGAGAGAGAGCGGGA+GGG | - | chr6_4:4238299-4238318 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGAGAGCGGG+AGG | - | chr6_4:4238300-4238319 | None:intergenic | 60.0% | |
| CAGTGCTGTCTCCGACATCC+CGG | - | chr6_4:4239784-4239803 | None:intergenic | 60.0% | |
| !! | CACGGGGGTGCTTGTGCTTA+AGG | - | chr6_4:4240887-4240906 | None:intergenic | 60.0% |
| CGAGCTGCTTCTCTGGACTC+AGG | - | chr6_4:4241705-4241724 | None:intergenic | 60.0% | |
| GTGGCTGCTGGCACGAGATT+GGG | - | chr6_4:4241768-4241787 | None:intergenic | 60.0% | |
| AGTGGCTGCTGGCACGAGAT+TGG | - | chr6_4:4241769-4241788 | None:intergenic | 60.0% | |
| GCCAGCAGCCACTGTATCTG+AGG | + | chr6_4:4241776-4241795 | Msa0972090:CDS | 60.0% | |
| TGTGACCAGCATTGCACGGG+AGG | + | chr6_4:4242013-4242032 | Msa0972090:CDS | 60.0% | |
| GTGACCAGCATTGCACGGGA+GGG | + | chr6_4:4242014-4242033 | Msa0972090:CDS | 60.0% | |
| AAGACCCTCCCGTGCAATGC+TGG | - | chr6_4:4242021-4242040 | None:intergenic | 60.0% | |
| GAGAGAGAGAGCGGGAGGGA+GGG | - | chr6_4:4238295-4238314 | None:intergenic | 65.0% | |
| AGAGAGAGAGAGCGGGAGGG+AGG | - | chr6_4:4238296-4238315 | None:intergenic | 65.0% | |
| GCACCCCCGTGTTCGTGCAA+AGG | + | chr6_4:4240896-4240915 | Msa0972090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4238033 | 4242049 | 4238033 | ID=Msa0972090;Name=Msa0972090 |
| chr6_4 | mRNA | 4238033 | 4242049 | 4238033 | ID=Msa0972090-mRNA-1;Parent=Msa0972090;Name=Msa0972090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=266|1|0.83|1|0.8|0.66|6|0|379 |
| chr6_4 | exon | 4238033 | 4238282 | 4238033 | ID=Msa0972090-mRNA-1:exon:1873;Parent=Msa0972090-mRNA-1 |
| chr6_4 | exon | 4239770 | 4240067 | 4239770 | ID=Msa0972090-mRNA-1:exon:1874;Parent=Msa0972090-mRNA-1 |
| chr6_4 | exon | 4240273 | 4240379 | 4240273 | ID=Msa0972090-mRNA-1:exon:1875;Parent=Msa0972090-mRNA-1 |
| chr6_4 | exon | 4240517 | 4240649 | 4240517 | ID=Msa0972090-mRNA-1:exon:1876;Parent=Msa0972090-mRNA-1 |
| chr6_4 | exon | 4240759 | 4240953 | 4240759 | ID=Msa0972090-mRNA-1:exon:1877;Parent=Msa0972090-mRNA-1 |
| chr6_4 | exon | 4241627 | 4242049 | 4241627 | ID=Msa0972090-mRNA-1:exon:1878;Parent=Msa0972090-mRNA-1 |
| chr6_4 | five_prime_UTR | 4238033 | 4238282 | 4238033 | ID=Msa0972090-mRNA-1:five_prime_utr;Parent=Msa0972090-mRNA-1 |
| chr6_4 | five_prime_UTR | 4239770 | 4239785 | 4239770 | ID=Msa0972090-mRNA-1:five_prime_utr;Parent=Msa0972090-mRNA-1 |
| chr6_4 | CDS | 4239786 | 4240067 | 4239786 | ID=Msa0972090-mRNA-1:cds;Parent=Msa0972090-mRNA-1 |
| chr6_4 | CDS | 4240273 | 4240379 | 4240273 | ID=Msa0972090-mRNA-1:cds;Parent=Msa0972090-mRNA-1 |
| chr6_4 | CDS | 4240517 | 4240649 | 4240517 | ID=Msa0972090-mRNA-1:cds;Parent=Msa0972090-mRNA-1 |
| chr6_4 | CDS | 4240759 | 4240953 | 4240759 | ID=Msa0972090-mRNA-1:cds;Parent=Msa0972090-mRNA-1 |
| chr6_4 | CDS | 4241627 | 4242049 | 4241627 | ID=Msa0972090-mRNA-1:cds;Parent=Msa0972090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
