AlfalfaGEDB | Msa0069220

M. sativa cultivar zhongmu-4 / Msa0069220

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048193 GO:0051179 GO:0051234
PFAM: PF08551.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069220	XP_003591941.1	99.057	318	2	1	1	318	1	317	0.0	639

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069220	sp\|Q8LF05\|RBL19_ARATH	66.890	299	99	0	20	318	6	304	2.41e-143	409

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069220	G7I9J5	99.057	318	2	1	1	318	1	317	0.0	639

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0069220	Msa0131240	0.833029	6.743816e-56	-8.615850e-47
Msa0069220	Msa0483290	0.831888	1.293214e-55	-8.615850e-47
Msa0069220	Msa0934940	0.809026	2.318845e-50	-8.615850e-47
Msa0069220	Msa1141250	0.810819	9.533249e-51	-8.615850e-47
Msa0069220	Msa1170640	0.829413	5.220491e-55	-8.615850e-47
Msa0069220	Msa1211390	-0.826457	2.685208e-54	-8.615850e-47
Msa0069220	Msa1413900	-0.807439	5.051279e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069220	MtrunA17_Chr1g0199931	99.057	318	2	1	1	318	1	317	0.0	639

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069220	AT3G07950.1	66.890	299	99	0	20	318	6	304	2.45e-144	409

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Find 100 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGTTTGTTCAACGTAAC+CGG	0.368690	1_2:+37466753	None:intergenic
AAGAAAGGTTGGCTAACGAG+AGG	0.692597	1_2:-37465082	Msa0069220:CDS
AAGCCGGAAACAAAGCTTAA+GGG	0.498827	1_2:-37465745	Msa0069220:CDS
AAGGTTGGCTAACGAGAGGT+TGG	0.561612	1_2:-37465078	Msa0069220:CDS
AAGTTGCTTGAGCCAGTATG+GGG	0.623617	1_2:-37466582	Msa0069220:CDS
AATCAAGATAAACTAGTTGT+TGG	0.419481	1_2:-37464723	None:intergenic
AATTCCCTGGGACCCCATAC+TGG	0.413994	1_2:+37466570	None:intergenic
ACCGGCTGTAATGAGGTTCC+AGG	0.465128	1_2:+37466771	None:intergenic
ACCTCGCTCTCATTCCCGCC+AGG	0.526374	1_2:-37467293	Msa0069220:intron
ACCTGGCGGGAATGAGAGCG+AGG	0.651805	1_2:+37467292	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAAGGTGAGAAAGAAA+AGG	+	chr1_2:37465122-37465141	None:intergenic	30.0%
AAGGGAAACATTTGAATTGA+AGG	+	chr1_2:37465136-37465155	None:intergenic	30.0%
ACTTATACCTAAGCTAATGA+TGG	+	chr1_2:37465268-37465287	None:intergenic	30.0%
AAGTGTCTGTGTTTATAAGT+GGG	-	chr1_2:37465468-37465487	Msa0069220:CDS	30.0%
GATGAACTTTATAAATTCCC+TGG	+	chr1_2:37465829-37465848	None:intergenic	30.0%
TGTAATGTAGTACAAAGCAA+TGG	+	chr1_2:37465895-37465914	None:intergenic	30.0%
TTTGTACTACATTACAAGAC+AGG	-	chr1_2:37465899-37465918	Msa0069220:intron	30.0%
TTCTATTACAAGCTTAATGG+AGG	-	chr1_2:37466064-37466083	Msa0069220:CDS	30.0%
CACATAATGAAAGCTTGAAA+TGG	+	chr1_2:37466091-37466110	None:intergenic	30.0%
CATTTCAAGCTTTCATTATG+TGG	-	chr1_2:37466089-37466108	Msa0069220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	37464726	37467679	37464726	ID=Msa0069220;Name=Msa0069220
chr1_2	mRNA	37464726	37467679	37464726	ID=Msa0069220-mRNA-1;Parent=Msa0069220;Name=Msa0069220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119\|1\|1\|1\|1\|1\|8\|299\|318
chr1_2	exon	37464726	37465127	37464726	ID=Msa0069220-mRNA-1:exon:11814;Parent=Msa0069220-mRNA-1
chr1_2	exon	37465459	37465596	37465459	ID=Msa0069220-mRNA-1:exon:11813;Parent=Msa0069220-mRNA-1
chr1_2	exon	37465694	37465896	37465694	ID=Msa0069220-mRNA-1:exon:11812;Parent=Msa0069220-mRNA-1
chr1_2	exon	37466014	37466119	37466014	ID=Msa0069220-mRNA-1:exon:11811;Parent=Msa0069220-mRNA-1
chr1_2	exon	37466474	37466640	37466474	ID=Msa0069220-mRNA-1:exon:11810;Parent=Msa0069220-mRNA-1
chr1_2	exon	37466747	37466807	37466747	ID=Msa0069220-mRNA-1:exon:11809;Parent=Msa0069220-mRNA-1
chr1_2	exon	37467294	37467433	37467294	ID=Msa0069220-mRNA-1:exon:11808;Parent=Msa0069220-mRNA-1
chr1_2	exon	37467522	37467679	37467522	ID=Msa0069220-mRNA-1:exon:11807;Parent=Msa0069220-mRNA-1
chr1_2	five_prime_UTR	37467561	37467679	37467561	ID=Msa0069220-mRNA-1:five_prime_utr;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37467522	37467560	37467522	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37467294	37467433	37467294	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37466747	37466807	37466747	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37466474	37466640	37466474	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37466014	37466119	37466014	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37465694	37465896	37465694	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37465459	37465596	37465459	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	CDS	37465025	37465127	37465025	ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1
chr1_2	three_prime_UTR	37464726	37465024	37464726	ID=Msa0069220-mRNA-1:three_prime_utr;Parent=Msa0069220-mRNA-1

Gene Sequence

>Msa0069220

ATGAGCTCGCCTTCTCTTCCCGTCTCATCACAGTCACAGGGCACAAGAACGTTATCGACTGTGTCAGTGTCTGGATTCACACGACTCTGCAAGGGTCTCGCTCTCGTTCTCGTTGCAGCCCACGCTGTTCTTTATTTCTTCCCTTCCGCTCTCACCTACCTCGCTCTCATTCCCGCCAGGACAATACCATTTGCCTGGAACCTCATTACAGCCGGTTACGTTGAACAAACTGTTCATGGGGTTGTTATCAGCATAGTTTGTCTTCTCTTAATTGGCAAGTTGCTTGAGCCAGTATGGGGTCCCAGGGAATTTATAAAGTTCATCTTTATAGTTAACATCTTAACTTCTCTCTGCATTTTCATCACTGCCATTGCTTTGTACTACATTACAAGACAGGAGATTTATCTCTATACGCCACTTTCTGGATTTCATGGAGTGATATCTGGCTTCTTGGTTAGCATCAAGCAAATTATACCAGATCAAGAGCTTCCTTTCGTCAATATAAAAATGAAGTGGCTACCATCTATCGCTTTATTGTGTTCTATTGTTCTGAGCTTCTGGATAATAGAGGCAACAACATATCTCCCAACTGTTATATTTGGTACATATATGAGCTGGATTTACCTGAGATACTGGCAGAAGAAGCCGGAAACAAAGCTTAAGGGTGACCCAAGTGAGGATTTTGCATTCTCTACATTTTTCCCAGAGATTTTAAGACCAGTAATAGATCCTATTGCATCAATATTTCATCGAATGCTCTGTGGAAGATCTGATGCTTCTAATGATGCTGAAGATTACGATCTTGGAAGTGAACATTTGCCAGGTTCTGACCCCATTGAGGCATCTAGGAGACGAGAAAGAGGTGCCCGAGCACTGGAAGAAAGGTTGGCTAACGAGAGGTTGGCTACTTCGCGGAGTGCAGGGGAGTTGCAAACAAATGCCGCAGGAAATGTATAA

Protein sequence

>Msa0069220

MSSPSLPVSSQSQGTRTLSTVSVSGFTRLCKGLALVLVAAHAVLYFFPSALTYLALIPARTIPFAWNLITAGYVEQTVHGVVISIVCLLLIGKLLEPVWGPREFIKFIFIVNILTSLCIFITAIALYYITRQEIYLYTPLSGFHGVISGFLVSIKQIIPDQELPFVNIKMKWLPSIALLCSIVLSFWIIEATTYLPTVIFGTYMSWIYLRYWQKKPETKLKGDPSEDFAFSTFFPEILRPVIDPIASIFHRMLCGRSDASNDAEDYDLGSEHLPGSDPIEASRRRERGARALEERLANERLATSRSAGELQTNAAGNV*