Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069220 | XP_003591941.1 | 99.057 | 318 | 2 | 1 | 1 | 318 | 1 | 317 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069220 | sp|Q8LF05|RBL19_ARATH | 66.890 | 299 | 99 | 0 | 20 | 318 | 6 | 304 | 2.41e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069220 | G7I9J5 | 99.057 | 318 | 2 | 1 | 1 | 318 | 1 | 317 | 0.0 | 639 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069220 | Msa0131240 | 0.833029 | 6.743816e-56 | -8.615850e-47 |
| Msa0069220 | Msa0483290 | 0.831888 | 1.293214e-55 | -8.615850e-47 |
| Msa0069220 | Msa0934940 | 0.809026 | 2.318845e-50 | -8.615850e-47 |
| Msa0069220 | Msa1141250 | 0.810819 | 9.533249e-51 | -8.615850e-47 |
| Msa0069220 | Msa1170640 | 0.829413 | 5.220491e-55 | -8.615850e-47 |
| Msa0069220 | Msa1211390 | -0.826457 | 2.685208e-54 | -8.615850e-47 |
| Msa0069220 | Msa1413900 | -0.807439 | 5.051279e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069220 | MtrunA17_Chr1g0199931 | 99.057 | 318 | 2 | 1 | 1 | 318 | 1 | 317 | 0.0 | 639 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069220 | AT3G07950.1 | 66.890 | 299 | 99 | 0 | 20 | 318 | 6 | 304 | 2.45e-144 | 409 |
Find 100 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTAAAATATTCCTTTA+AGG | 0.111127 | 1_2:+37464902 | None:intergenic |
| TCTAGCTATACGCCACTTTC+TGG | 0.171913 | 1_2:-37466102 | Msa0069220:intron |
| ATAGTTTGTCTTCTCTTAAT+TGG | 0.213685 | 1_2:-37466606 | Msa0069220:CDS |
| TATCTCCCAACTGTTATATT+TGG | 0.226590 | 1_2:-37465808 | Msa0069220:CDS |
| GTTCTATTGTTCTGAGCTTC+TGG | 0.234816 | 1_2:-37465849 | Msa0069220:CDS |
| GCAAGTTGCTTGAGCCAGTA+TGG | 0.253816 | 1_2:-37466584 | Msa0069220:CDS |
| GGATTTCATGGAGTGATATC+TGG | 0.288533 | 1_2:-37466081 | Msa0069220:CDS |
| ATTGCTTATCGATCCAATAT+TGG | 0.294681 | 1_2:-37464754 | Msa0069220:three_prime_UTR |
| TGATTCTTGACATCCAATAT+TGG | 0.294853 | 1_2:+37464741 | None:intergenic |
| TGGAGTGATATCTGGCTTCT+TGG | 0.301472 | 1_2:-37466073 | Msa0069220:CDS |
| ACGCCACTTTCTGGATTTCA+TGG | 0.317090 | 1_2:-37466093 | Msa0069220:CDS |
| TATCTGAATTTACAAAATCT+AGG | 0.321788 | 1_2:+37464999 | None:intergenic |
| CGCTCATGATAGTTTCATAT+TGG | 0.322870 | 1_2:+37464969 | None:intergenic |
| TCACCCTTAAGCTTTGTTTC+CGG | 0.323823 | 1_2:+37465742 | None:intergenic |
| AGACAAATAAAAGAAAGAAT+TGG | 0.330289 | 1_2:-37467594 | Msa0069220:five_prime_UTR |
| TTTGTAAATTCAGATAAGTT+TGG | 0.343360 | 1_2:-37464992 | Msa0069220:three_prime_UTR |
| CGATGAAATATTGATGCAAT+AGG | 0.351484 | 1_2:+37465561 | None:intergenic |
| ATAACTTACCTTAAAATCTC+TGG | 0.362264 | 1_2:+37465685 | None:intergenic |
| TTGGCTACTTCGCGGAGTGC+AGG | 0.365183 | 1_2:-37465059 | Msa0069220:CDS |
| AACAGTTTGTTCAACGTAAC+CGG | 0.368690 | 1_2:+37466753 | None:intergenic |
| TACGTTGAACAAACTGTTCA+TGG | 0.372400 | 1_2:-37466748 | Msa0069220:CDS |
| CGTCTCCTAGATGCCTCAAT+GGG | 0.379047 | 1_2:+37465459 | None:intergenic |
| TTATCGACTGTGTCAGTGTC+TGG | 0.398825 | 1_2:-37467399 | Msa0069220:CDS |
| GATGCTGAAGATTACGATCT+TGG | 0.405414 | 1_2:-37465507 | Msa0069220:CDS |
| GACAAATAAAAGAAAGAATT+GGG | 0.407285 | 1_2:-37467593 | Msa0069220:five_prime_UTR |
| AATTCCCTGGGACCCCATAC+TGG | 0.413994 | 1_2:+37466570 | None:intergenic |
| GATGCAATAGGATCTATTAC+TGG | 0.414267 | 1_2:+37465573 | None:intergenic |
| AATCAAGATAAACTAGTTGT+TGG | 0.419481 | 1_2:-37464723 | None:intergenic |
| CTTGGAAGTGAACATTTGCC+AGG | 0.425379 | 1_2:-37465489 | Msa0069220:CDS |
| CCAACCTTTCTTCCAGTGCT+CGG | 0.426478 | 1_2:+37465093 | None:intergenic |
| CAAGTTGCTTGAGCCAGTAT+GGG | 0.433068 | 1_2:-37466583 | Msa0069220:CDS |
| GATGAACTTTATAAATTCCC+TGG | 0.433979 | 1_2:+37466557 | None:intergenic |
| AGAAAGAGGTGCCCGAGCAC+TGG | 0.436362 | 1_2:-37465105 | Msa0069220:CDS |
| GAACACAATAAAGCGATAGA+TGG | 0.444977 | 1_2:+37465868 | None:intergenic |
| GCTTCTTCTGCCAGTATCTC+AGG | 0.451123 | 1_2:+37465764 | None:intergenic |
| CTGACCCCATTGAGGCATCT+AGG | 0.457185 | 1_2:-37465464 | Msa0069220:CDS |
| GCTGGATTTACCTGAGATAC+TGG | 0.457712 | 1_2:-37465774 | Msa0069220:CDS |
| TGGCTACTTCGCGGAGTGCA+GGG | 0.459320 | 1_2:-37465058 | Msa0069220:CDS |
| ACCGGCTGTAATGAGGTTCC+AGG | 0.465128 | 1_2:+37466771 | None:intergenic |
| GAAGCCGGAAACAAAGCTTA+AGG | 0.465257 | 1_2:-37465746 | Msa0069220:CDS |
| CCGTCTCCTAGATGCCTCAA+TGG | 0.465259 | 1_2:+37465458 | None:intergenic |
| GCAGGACAATACCATTTGCC+TGG | 0.468808 | 1_2:-37466789 | Msa0069220:intron |
| GCCTCAATGGGGTCAGAACC+TGG | 0.474004 | 1_2:+37465471 | None:intergenic |
| CAACCTTTCTTCCAGTGCTC+GGG | 0.477825 | 1_2:+37465094 | None:intergenic |
| GCGAGGTAGGTGAGAGCGGA+AGG | 0.478280 | 1_2:+37467309 | None:intergenic |
| TATGTACCAAATATAACAGT+TGG | 0.478340 | 1_2:+37465802 | None:intergenic |
| TTGAGCCAGTATGGGGTCCC+AGG | 0.478497 | 1_2:-37466575 | Msa0069220:CDS |
| ATCTGAATTTACAAAATCTA+GGG | 0.480923 | 1_2:+37465000 | None:intergenic |
| TATTTGGTACATATATGAGC+TGG | 0.486230 | 1_2:-37465792 | Msa0069220:CDS |
| TCTGAGCTTCTGGATAATAG+AGG | 0.494967 | 1_2:-37465839 | Msa0069220:CDS |
| AAGCCGGAAACAAAGCTTAA+GGG | 0.498827 | 1_2:-37465745 | Msa0069220:CDS |
| ACGTTGAACAAACTGTTCAT+GGG | 0.500320 | 1_2:-37466747 | Msa0069220:CDS |
| TTTGTACTACATTACAAGAC+AGG | 0.505647 | 1_2:-37466484 | Msa0069220:CDS |
| TAACTTACCTTAAAATCTCT+GGG | 0.509944 | 1_2:+37465686 | None:intergenic |
| GTAATGAGGTTCCAGGCAAA+TGG | 0.511611 | 1_2:+37466778 | None:intergenic |
| ACGAAAGGAAGCTCTTGATC+TGG | 0.516753 | 1_2:+37466030 | None:intergenic |
| GTGCCCGAGCACTGGAAGAA+AGG | 0.518496 | 1_2:-37465097 | Msa0069220:CDS |
| GCCTGGAACCTCATTACAGC+CGG | 0.524904 | 1_2:-37466772 | Msa0069220:CDS |
| ACCTCGCTCTCATTCCCGCC+AGG | 0.526374 | 1_2:-37467293 | Msa0069220:intron |
| TCCCGTCTCATCACAGTCAC+AGG | 0.530989 | 1_2:-37467521 | Msa0069220:intron |
| GAGAATGCAAAATCCTCACT+TGG | 0.534096 | 1_2:+37465718 | None:intergenic |
| TGATTATACAACTGCATGGA+AGG | 0.535217 | 1_2:-37464790 | Msa0069220:three_prime_UTR |
| CCGAGCACTGGAAGAAAGGT+TGG | 0.540323 | 1_2:-37465093 | Msa0069220:CDS |
| ATGAACTTTATAAATTCCCT+GGG | 0.543126 | 1_2:+37466558 | None:intergenic |
| GAGATACTGGCAGAAGAAGC+CGG | 0.547275 | 1_2:-37465761 | Msa0069220:CDS |
| GACTGTGATCTTCATGTGAG+TGG | 0.547508 | 1_2:-37464869 | Msa0069220:three_prime_UTR |
| ACTCCATGAAATCCAGAAAG+TGG | 0.547828 | 1_2:+37466090 | None:intergenic |
| GAGAGCGAGGTAGGTGAGAG+CGG | 0.549328 | 1_2:+37467305 | None:intergenic |
| GCCAGGTTCTGACCCCATTG+AGG | 0.551934 | 1_2:-37465472 | Msa0069220:CDS |
| TGGATTCACACGACTCTGCA+AGG | 0.552218 | 1_2:-37467379 | Msa0069220:CDS |
| CAACGTAACCGGCTGTAATG+AGG | 0.557570 | 1_2:+37466764 | None:intergenic |
| TGTGATGAGACGGGAAGAGA+AGG | 0.558428 | 1_2:+37467529 | None:intergenic |
| AAGGTTGGCTAACGAGAGGT+TGG | 0.561612 | 1_2:-37465078 | Msa0069220:CDS |
| ACGAGAGGTTGGCTACTTCG+CGG | 0.563072 | 1_2:-37465067 | Msa0069220:CDS |
| GGCTACTTCGCGGAGTGCAG+GGG | 0.564830 | 1_2:-37465057 | Msa0069220:CDS |
| ATGTACCAAATATAACAGTT+GGG | 0.565063 | 1_2:+37465803 | None:intergenic |
| AGAAAAGGTAGTTACCTGGC+GGG | 0.583997 | 1_2:+37467279 | None:intergenic |
| ATGAGCGACATTATCACAGT+TGG | 0.585291 | 1_2:-37464953 | Msa0069220:three_prime_UTR |
| CGTTGAACAAACTGTTCATG+GGG | 0.600069 | 1_2:-37466746 | Msa0069220:intron |
| TGAGCCAGTATGGGGTCCCA+GGG | 0.605388 | 1_2:-37466574 | Msa0069220:CDS |
| CAGCTCAATTATCTGAGACA+AGG | 0.610943 | 1_2:+37464836 | None:intergenic |
| GGATTCACACGACTCTGCAA+GGG | 0.617498 | 1_2:-37467378 | Msa0069220:CDS |
| CGAGGTAGGTGAGAGCGGAA+GGG | 0.618929 | 1_2:+37467310 | None:intergenic |
| AAGTTGCTTGAGCCAGTATG+GGG | 0.623617 | 1_2:-37466582 | Msa0069220:CDS |
| TACCTGTGACTGTGATGAGA+CGG | 0.626766 | 1_2:+37467519 | None:intergenic |
| GGCGGGAATGAGAGCGAGGT+AGG | 0.628802 | 1_2:+37467296 | None:intergenic |
| ACCTGTGACTGTGATGAGAC+GGG | 0.629877 | 1_2:+37467520 | None:intergenic |
| TGTAATGTAGTACAAAGCAA+TGG | 0.632081 | 1_2:+37466491 | None:intergenic |
| ATATTGATTATACAACTGCA+TGG | 0.632517 | 1_2:-37464794 | Msa0069220:three_prime_UTR |
| GAGTTGCAAACAAATGCCGC+AGG | 0.633483 | 1_2:-37465035 | Msa0069220:CDS |
| CCATTGAGGCATCTAGGAGA+CGG | 0.641159 | 1_2:-37465458 | Msa0069220:intron |
| AGAATGCAAAATCCTCACTT+GGG | 0.648231 | 1_2:+37465719 | None:intergenic |
| ACCTGGCGGGAATGAGAGCG+AGG | 0.651805 | 1_2:+37467292 | None:intergenic |
| GAAGAAATAAAGAACAGCGT+GGG | 0.655352 | 1_2:+37467332 | None:intergenic |
| GCTTAAGGGTGACCCAAGTG+AGG | 0.669268 | 1_2:-37465731 | Msa0069220:CDS |
| AGGGAATTATACATTTCCTG+CGG | 0.669691 | 1_2:+37465019 | None:intergenic |
| ATATTTCATCGAATGCTCTG+TGG | 0.677191 | 1_2:-37465549 | Msa0069220:CDS |
| AAGAAAGGTTGGCTAACGAG+AGG | 0.692597 | 1_2:-37465082 | Msa0069220:CDS |
| GGAAGAAATAAAGAACAGCG+TGG | 0.711760 | 1_2:+37467331 | None:intergenic |
| GTCTCCTAGATGCCTCAATG+GGG | 0.734529 | 1_2:+37465460 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCATAATCTATTAATTAT+TGG | + | chr1_2:37465171-37465190 | None:intergenic | 15.0% |
| !! | TTTAATAATTGTACTAAGTT+GGG | + | chr1_2:37465414-37465433 | None:intergenic | 15.0% |
| !!! | TTTTAATAATTGTACTAAGT+TGG | + | chr1_2:37465415-37465434 | None:intergenic | 15.0% |
| !! | TAAAAACATACTAATGTTAA+TGG | + | chr1_2:37465742-37465761 | None:intergenic | 15.0% |
| !!! | TAACATTAGTATGTTTTTAT+AGG | - | chr1_2:37465743-37465762 | Msa0069220:CDS | 15.0% |
| !! | AATATAATCTCATAAAGTAA+TGG | + | chr1_2:37465950-37465969 | None:intergenic | 15.0% |
| !! | GTAAAAAGATATAAAAGAAT+TGG | + | chr1_2:37466250-37466269 | None:intergenic | 15.0% |
| !! | AAATTATAAATTACTACTGT+GGG | - | chr1_2:37466995-37467014 | Msa0069220:intron | 15.0% |
| !! | CAAATTAAAATATTCCTTTA+AGG | + | chr1_2:37467484-37467503 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTGCATGTATT+TGG | - | chr1_2:37467492-37467511 | Msa0069220:intron | 15.0% |
| !! | AGACAAATAAAAGAAAGAAT+TGG | - | chr1_2:37464789-37464808 | Msa0069220:three_prime_UTR | 20.0% |
| !! | GACAAATAAAAGAAAGAATT+GGG | - | chr1_2:37464790-37464809 | Msa0069220:three_prime_UTR | 20.0% |
| !! | TATTGGAAATATGTGATAAA+GGG | + | chr1_2:37465154-37465173 | None:intergenic | 20.0% |
| !! | TTATTGGAAATATGTGATAA+AGG | + | chr1_2:37465155-37465174 | None:intergenic | 20.0% |
| !! | AAGAAAGAAATATGATAAAC+AGG | + | chr1_2:37466008-37466027 | None:intergenic | 20.0% |
| !! | TAAGCTTGTAATAGAAAAAA+TGG | + | chr1_2:37466060-37466079 | None:intergenic | 20.0% |
| !!! | TTTTTCTATTACAAGCTTAA+TGG | - | chr1_2:37466061-37466080 | Msa0069220:CDS | 20.0% |
| !!! | ATGACTTGTTTAAAAAACAT+TGG | + | chr1_2:37466150-37466169 | None:intergenic | 20.0% |
| !!! | TTCATTTTTATATTGACGAA+AGG | + | chr1_2:37466371-37466390 | None:intergenic | 20.0% |
| !! | TTTCGTCAATATAAAAATGA+AGG | - | chr1_2:37466370-37466389 | Msa0069220:intron | 20.0% |
| !!! | TTTAAGGTAAGTTATGATTT+TGG | - | chr1_2:37466706-37466725 | Msa0069220:intron | 20.0% |
| !! | GACATCAGATATAAAAAAAA+AGG | + | chr1_2:37466783-37466802 | None:intergenic | 20.0% |
| !! | CAAATTATAAATTACTACTG+TGG | - | chr1_2:37466994-37467013 | Msa0069220:intron | 20.0% |
| !! | AATTATAAATTACTACTGTG+GGG | - | chr1_2:37466996-37467015 | Msa0069220:intron | 20.0% |
| !! | ATCTGAATTTACAAAATCTA+GGG | + | chr1_2:37467386-37467405 | None:intergenic | 20.0% |
| !! | TATCTGAATTTACAAAATCT+AGG | + | chr1_2:37467387-37467406 | None:intergenic | 20.0% |
| !! | TTTGTAAATTCAGATAAGTT+TGG | - | chr1_2:37467391-37467410 | Msa0069220:CDS | 20.0% |
| ! | AATTGAGAATTGCAATTTGT+AGG | - | chr1_2:37464950-37464969 | Msa0069220:three_prime_UTR | 25.0% |
| ! | ATTGAGAATTGCAATTTGTA+GGG | - | chr1_2:37464951-37464970 | Msa0069220:three_prime_UTR | 25.0% |
| ! | TTAGGTATAAGTATAACCAT+TGG | - | chr1_2:37465276-37465295 | Msa0069220:intron | 25.0% |
| ! | ATAATGTTATGAAGACTCAT+AGG | + | chr1_2:37465529-37465548 | None:intergenic | 25.0% |
| !! | ATAGTTTGTCTTCTCTTAAT+TGG | - | chr1_2:37465777-37465796 | Msa0069220:CDS | 25.0% |
| ! | ATGAACTTTATAAATTCCCT+GGG | + | chr1_2:37465828-37465847 | None:intergenic | 25.0% |
| ! | ACATAATGAAAGCTTGAAAT+GGG | + | chr1_2:37466090-37466109 | None:intergenic | 25.0% |
| ! | ATGTACCAAATATAACAGTT+GGG | + | chr1_2:37466583-37466602 | None:intergenic | 25.0% |
| ! | TATGTACCAAATATAACAGT+TGG | + | chr1_2:37466584-37466603 | None:intergenic | 25.0% |
| ! | TAACTTACCTTAAAATCTCT+GGG | + | chr1_2:37466700-37466719 | None:intergenic | 25.0% |
| ! | ATAACTTACCTTAAAATCTC+TGG | + | chr1_2:37466701-37466720 | None:intergenic | 25.0% |
| !!! | AATTTGCTATATACTCAACT+AGG | + | chr1_2:37466980-37466999 | None:intergenic | 25.0% |
| ! | AAATGGTTTCAGTTAAAGAA+AGG | - | chr1_2:37467102-37467121 | Msa0069220:intron | 25.0% |
| ! | CTCAAATAAACAAGAAAAGA+TGG | + | chr1_2:37467159-37467178 | None:intergenic | 25.0% |
| !!! | ATTCTTTTGTTTGTCCTTAA+AGG | - | chr1_2:37467467-37467486 | Msa0069220:intron | 25.0% |
| !! | ATATTGATTATACAACTGCA+TGG | - | chr1_2:37467589-37467608 | Msa0069220:five_prime_UTR | 25.0% |
| AATTGAAGGTGAGAAAGAAA+AGG | + | chr1_2:37465122-37465141 | None:intergenic | 30.0% | |
| AAGGGAAACATTTGAATTGA+AGG | + | chr1_2:37465136-37465155 | None:intergenic | 30.0% | |
| ACTTATACCTAAGCTAATGA+TGG | + | chr1_2:37465268-37465287 | None:intergenic | 30.0% | |
| ! | CTGTTTTCATATATTGTCAC+CGG | - | chr1_2:37465323-37465342 | Msa0069220:intron | 30.0% |
| ! | AAAGTGTCTGTGTTTATAAG+TGG | - | chr1_2:37465467-37465486 | Msa0069220:CDS | 30.0% |
| AAGTGTCTGTGTTTATAAGT+GGG | - | chr1_2:37465468-37465487 | Msa0069220:CDS | 30.0% | |
| ! | CATTATTTTCCGTCAATGTA+AGG | - | chr1_2:37465543-37465562 | Msa0069220:CDS | 30.0% |
| GATGAACTTTATAAATTCCC+TGG | + | chr1_2:37465829-37465848 | None:intergenic | 30.0% | |
| TGTAATGTAGTACAAAGCAA+TGG | + | chr1_2:37465895-37465914 | None:intergenic | 30.0% | |
| TTTGTACTACATTACAAGAC+AGG | - | chr1_2:37465899-37465918 | Msa0069220:intron | 30.0% | |
| TTCTATTACAAGCTTAATGG+AGG | - | chr1_2:37466064-37466083 | Msa0069220:CDS | 30.0% | |
| CACATAATGAAAGCTTGAAA+TGG | + | chr1_2:37466091-37466110 | None:intergenic | 30.0% | |
| CATTTCAAGCTTTCATTATG+TGG | - | chr1_2:37466089-37466108 | Msa0069220:CDS | 30.0% | |
| TCAACACTAGAAAACATTGT+TGG | - | chr1_2:37466124-37466143 | Msa0069220:intron | 30.0% | |
| ATTAATGTGCATTGTGCAAT+TGG | + | chr1_2:37466227-37466246 | None:intergenic | 30.0% | |
| AAGCAATGAGTTACAAGTTA+AGG | + | chr1_2:37466416-37466435 | None:intergenic | 30.0% | |
| ATTTACTTCACAGCAACAAT+AGG | - | chr1_2:37466437-37466456 | Msa0069220:intron | 30.0% | |
| TATCTCCCAACTGTTATATT+TGG | - | chr1_2:37466575-37466594 | Msa0069220:CDS | 30.0% | |
| TATTTGGTACATATATGAGC+TGG | - | chr1_2:37466591-37466610 | Msa0069220:CDS | 30.0% | |
| ! | CATTTTTCCCAGAGATTTTA+AGG | - | chr1_2:37466690-37466709 | Msa0069220:intron | 30.0% |
| AAGTTGCTCAGAATAACTAA+AGG | + | chr1_2:37466757-37466776 | None:intergenic | 30.0% | |
| CGATGAAATATTGATGCAAT+AGG | + | chr1_2:37466825-37466844 | None:intergenic | 30.0% | |
| ! | TGAATTAAAAGCGCAGAAAA+GGG | + | chr1_2:37466957-37466976 | None:intergenic | 30.0% |
| AGAAAGATAATAGAAGTTGC+AGG | - | chr1_2:37467041-37467060 | Msa0069220:intron | 30.0% | |
| !!! | GAAACTTTTTTTTGCTGTGA+TGG | - | chr1_2:37467067-37467086 | Msa0069220:intron | 30.0% |
| TATTACAACAATGCTATGAC+AGG | + | chr1_2:37467209-37467228 | None:intergenic | 30.0% | |
| ATTGCTTATCGATCCAATAT+TGG | - | chr1_2:37467629-37467648 | Msa0069220:five_prime_UTR | 30.0% | |
| TGATTCTTGACATCCAATAT+TGG | + | chr1_2:37467645-37467664 | None:intergenic | 30.0% | |
| GAAGAAATAAAGAACAGCGT+GGG | + | chr1_2:37465054-37465073 | None:intergenic | 35.0% | |
| AGAAAGAAAAGGTAGTTACC+TGG | + | chr1_2:37465111-37465130 | None:intergenic | 35.0% | |
| CAATATATGAAAACAGGAGC+AGG | + | chr1_2:37465319-37465338 | None:intergenic | 35.0% | |
| CGGTGACAATATATGAAAAC+AGG | + | chr1_2:37465325-37465344 | None:intergenic | 35.0% | |
| AGTGTCTGTGTTTATAAGTG+GGG | - | chr1_2:37465469-37465488 | Msa0069220:CDS | 35.0% | |
| ATGAAGACTCATAGGAATTG+TGG | + | chr1_2:37465521-37465540 | None:intergenic | 35.0% | |
| ! | AACAGTTTGTTCAACGTAAC+CGG | + | chr1_2:37465633-37465652 | None:intergenic | 35.0% |
| TACGTTGAACAAACTGTTCA+TGG | - | chr1_2:37465635-37465654 | Msa0069220:intron | 35.0% | |
| ACGTTGAACAAACTGTTCAT+GGG | - | chr1_2:37465636-37465655 | Msa0069220:intron | 35.0% | |
| GTATAGCTAGAACATTGCAA+AGG | + | chr1_2:37466272-37466291 | None:intergenic | 35.0% | |
| GAGTTACAAGTTAAGGAACA+AGG | + | chr1_2:37466409-37466428 | None:intergenic | 35.0% | |
| GAGACATGGCACAATATTTA+GGG | + | chr1_2:37466477-37466496 | None:intergenic | 35.0% | |
| AGAGACATGGCACAATATTT+AGG | + | chr1_2:37466478-37466497 | None:intergenic | 35.0% | |
| GAACACAATAAAGCGATAGA+TGG | + | chr1_2:37466518-37466537 | None:intergenic | 35.0% | |
| AGAATGCAAAATCCTCACTT+GGG | + | chr1_2:37466667-37466686 | None:intergenic | 35.0% | |
| GATGCAATAGGATCTATTAC+TGG | + | chr1_2:37466813-37466832 | None:intergenic | 35.0% | |
| ATATTTCATCGAATGCTCTG+TGG | - | chr1_2:37466834-37466853 | Msa0069220:intron | 35.0% | |
| ! | GTGAATTAAAAGCGCAGAAA+AGG | + | chr1_2:37466958-37466977 | None:intergenic | 35.0% |
| CAAGAGAAAAGTAGTCACAA+TGG | + | chr1_2:37467255-37467274 | None:intergenic | 35.0% | |
| ! | CTTTTCTCTTGTAGAGAAAG+AGG | - | chr1_2:37467264-37467283 | Msa0069220:intron | 35.0% |
| AGGGAATTATACATTTCCTG+CGG | + | chr1_2:37467367-37467386 | None:intergenic | 35.0% | |
| CGCTCATGATAGTTTCATAT+TGG | + | chr1_2:37467417-37467436 | None:intergenic | 35.0% | |
| TGATTATACAACTGCATGGA+AGG | - | chr1_2:37467593-37467612 | Msa0069220:five_prime_UTR | 35.0% | |
| GGAAGAAATAAAGAACAGCG+TGG | + | chr1_2:37465055-37465074 | None:intergenic | 40.0% | |
| AAGAAAAGGTAGTTACCTGG+CGG | + | chr1_2:37465108-37465127 | None:intergenic | 40.0% | |
| ! | ATTGCTGCCATCATTAGCTT+AGG | - | chr1_2:37465258-37465277 | Msa0069220:intron | 40.0% |
| TGTGGCTTATGTAATGCCAA+TGG | + | chr1_2:37465295-37465314 | None:intergenic | 40.0% | |
| TCCACTTGTCAGTGTTTCAT+AGG | - | chr1_2:37465348-37465367 | Msa0069220:intron | 40.0% | |
| ACCTATGAAACACTGACAAG+TGG | + | chr1_2:37465352-37465371 | None:intergenic | 40.0% | |
| TTGTCAGTGTTTCATAGGTG+TGG | - | chr1_2:37465353-37465372 | Msa0069220:intron | 40.0% | |
| TGTCAGTGTTTCATAGGTGT+GGG | - | chr1_2:37465354-37465373 | Msa0069220:intron | 40.0% | |
| ! | TGTACTAAGTTGGGAGTGAA+AGG | + | chr1_2:37465405-37465424 | None:intergenic | 40.0% |
| GTGTCTGTGTTTATAAGTGG+GGG | - | chr1_2:37465470-37465489 | Msa0069220:CDS | 40.0% | |
| GACTCATAGGAATTGTGGTT+GGG | + | chr1_2:37465516-37465535 | None:intergenic | 40.0% | |
| AGACTCATAGGAATTGTGGT+TGG | + | chr1_2:37465517-37465536 | None:intergenic | 40.0% | |
| !! | AGGAAAGCACCTTACATTGA+CGG | + | chr1_2:37465555-37465574 | None:intergenic | 40.0% |
| CAACATGAAACCAACAGGAA+AGG | + | chr1_2:37465575-37465594 | None:intergenic | 40.0% | |
| CGTTGAACAAACTGTTCATG+GGG | - | chr1_2:37465637-37465656 | Msa0069220:intron | 40.0% | |
| TGAAGCAACAGATAGATCTC+AGG | + | chr1_2:37465707-37465726 | None:intergenic | 40.0% | |
| ! | GAGATCTATCTGTTGCTTCA+AGG | - | chr1_2:37465707-37465726 | Msa0069220:CDS | 40.0% |
| GAGTTTCAAAGTGAAGTGCA+AGG | + | chr1_2:37466038-37466057 | None:intergenic | 40.0% | |
| ACTCCATGAAATCCAGAAAG+TGG | + | chr1_2:37466296-37466315 | None:intergenic | 40.0% | |
| GGATTTCATGGAGTGATATC+TGG | - | chr1_2:37466302-37466321 | Msa0069220:intron | 40.0% | |
| CACTGAACAGAAAAGAGACA+TGG | + | chr1_2:37466491-37466510 | None:intergenic | 40.0% | |
| ! | CATGTCTCTTTTCTGTTCAG+TGG | - | chr1_2:37466489-37466508 | Msa0069220:CDS | 40.0% |
| ! | GTTCTATTGTTCTGAGCTTC+TGG | - | chr1_2:37466534-37466553 | Msa0069220:CDS | 40.0% |
| TCTGAGCTTCTGGATAATAG+AGG | - | chr1_2:37466544-37466563 | Msa0069220:CDS | 40.0% | |
| AAGCCGGAAACAAAGCTTAA+GGG | - | chr1_2:37466638-37466657 | Msa0069220:intron | 40.0% | |
| !! | TCACCCTTAAGCTTTGTTTC+CGG | + | chr1_2:37466644-37466663 | None:intergenic | 40.0% |
| GAGAATGCAAAATCCTCACT+TGG | + | chr1_2:37466668-37466687 | None:intergenic | 40.0% | |
| ! | AGGATCTATTACTGGTCTAC+AGG | + | chr1_2:37466805-37466824 | None:intergenic | 40.0% |
| GATGCTGAAGATTACGATCT+TGG | - | chr1_2:37466876-37466895 | Msa0069220:intron | 40.0% | |
| ! | GATGGTTGCTTGATGGTAAA+TGG | - | chr1_2:37467085-37467104 | Msa0069220:intron | 40.0% |
| ATGAGCGACATTATCACAGT+TGG | - | chr1_2:37467430-37467449 | Msa0069220:intron | 40.0% | |
| ! | CAGCTCAATTATCTGAGACA+AGG | + | chr1_2:37467550-37467569 | None:intergenic | 40.0% |
| GATCATCATCATCATCGTCG+TGG | - | chr1_2:37464755-37464774 | Msa0069220:three_prime_UTR | 45.0% | |
| TACCTGTGACTGTGATGAGA+CGG | + | chr1_2:37464867-37464886 | None:intergenic | 45.0% | |
| ! | TTATCGACTGTGTCAGTGTC+TGG | - | chr1_2:37464984-37465003 | Msa0069220:three_prime_UTR | 45.0% |
| AGAAAAGGTAGTTACCTGGC+GGG | + | chr1_2:37465107-37465126 | None:intergenic | 45.0% | |
| ATGAAAACAGGAGCAGGTTG+TGG | + | chr1_2:37465313-37465332 | None:intergenic | 45.0% | |
| AAACACTGACAAGTGGACAC+CGG | + | chr1_2:37465345-37465364 | None:intergenic | 45.0% | |
| GTTTATAAGTGGGGGATTCG+TGG | - | chr1_2:37465478-37465497 | Msa0069220:CDS | 45.0% | |
| ! | AAGGTGCTTTCCTTTCCTGT+TGG | - | chr1_2:37465562-37465581 | Msa0069220:CDS | 45.0% |
| !! | TCCTGTTGGTTTCATGTTGC+AGG | - | chr1_2:37465576-37465595 | Msa0069220:CDS | 45.0% |
| TCCTGCAACATGAAACCAAC+AGG | + | chr1_2:37465580-37465599 | None:intergenic | 45.0% | |
| GTAATGAGGTTCCAGGCAAA+TGG | + | chr1_2:37465608-37465627 | None:intergenic | 45.0% | |
| CAAGTTGCTTGAGCCAGTAT+GGG | - | chr1_2:37465800-37465819 | Msa0069220:CDS | 45.0% | |
| AAGTTGCTTGAGCCAGTATG+GGG | - | chr1_2:37465801-37465820 | Msa0069220:CDS | 45.0% | |
| CAAAGTGAAGTGCAAGGTCT+GGG | + | chr1_2:37466032-37466051 | None:intergenic | 45.0% | |
| TCAAAGTGAAGTGCAAGGTC+TGG | + | chr1_2:37466033-37466052 | None:intergenic | 45.0% | |
| ! | TCTAGCTATACGCCACTTTC+TGG | - | chr1_2:37466281-37466300 | Msa0069220:intron | 45.0% |
| ! | ACGCCACTTTCTGGATTTCA+TGG | - | chr1_2:37466290-37466309 | Msa0069220:intron | 45.0% |
| ! | TGGAGTGATATCTGGCTTCT+TGG | - | chr1_2:37466310-37466329 | Msa0069220:intron | 45.0% |
| ACGAAAGGAAGCTCTTGATC+TGG | + | chr1_2:37466356-37466375 | None:intergenic | 45.0% | |
| GCTGGATTTACCTGAGATAC+TGG | - | chr1_2:37466609-37466628 | Msa0069220:CDS | 45.0% | |
| GAAGCCGGAAACAAAGCTTA+AGG | - | chr1_2:37466637-37466656 | Msa0069220:intron | 45.0% | |
| CTTGGAAGTGAACATTTGCC+AGG | - | chr1_2:37466894-37466913 | Msa0069220:intron | 45.0% | |
| TTGCTGTGATGGTTGCTTGA+TGG | - | chr1_2:37467078-37467097 | Msa0069220:intron | 45.0% | |
| ! | AAGAAAGGTTGGCTAACGAG+AGG | - | chr1_2:37467301-37467320 | Msa0069220:CDS | 45.0% |
| GACTGTGATCTTCATGTGAG+TGG | - | chr1_2:37467514-37467533 | Msa0069220:intron | 45.0% | |
| TGTGATGAGACGGGAAGAGA+AGG | + | chr1_2:37464857-37464876 | None:intergenic | 50.0% | |
| ACCTGTGACTGTGATGAGAC+GGG | + | chr1_2:37464866-37464885 | None:intergenic | 50.0% | |
| TGGATTCACACGACTCTGCA+AGG | - | chr1_2:37465004-37465023 | Msa0069220:three_prime_UTR | 50.0% | |
| GGATTCACACGACTCTGCAA+GGG | - | chr1_2:37465005-37465024 | Msa0069220:three_prime_UTR | 50.0% | |
| CAGTGTTTCATAGGTGTGGG+TGG | - | chr1_2:37465357-37465376 | Msa0069220:intron | 50.0% | |
| TTTCATAGGTGTGGGTGGAG+TGG | - | chr1_2:37465362-37465381 | Msa0069220:intron | 50.0% | |
| GCAGGACAATACCATTTGCC+TGG | - | chr1_2:37465594-37465613 | Msa0069220:intron | 50.0% | |
| CAACGTAACCGGCTGTAATG+AGG | + | chr1_2:37465622-37465641 | None:intergenic | 50.0% | |
| GCAAGTTGCTTGAGCCAGTA+TGG | - | chr1_2:37465799-37465818 | Msa0069220:CDS | 50.0% | |
| GCTTCTTCTGCCAGTATCTC+AGG | + | chr1_2:37466622-37466641 | None:intergenic | 50.0% | |
| GAGATACTGGCAGAAGAAGC+CGG | - | chr1_2:37466622-37466641 | Msa0069220:intron | 50.0% | |
| GTCTCCTAGATGCCTCAATG+GGG | + | chr1_2:37466926-37466945 | None:intergenic | 50.0% | |
| CGTCTCCTAGATGCCTCAAT+GGG | + | chr1_2:37466927-37466946 | None:intergenic | 50.0% | |
| ! | CCATTGAGGCATCTAGGAGA+CGG | - | chr1_2:37466925-37466944 | Msa0069220:intron | 50.0% |
| CAACCTTTCTTCCAGTGCTC+GGG | + | chr1_2:37467292-37467311 | None:intergenic | 50.0% | |
| CCAACCTTTCTTCCAGTGCT+CGG | + | chr1_2:37467293-37467312 | None:intergenic | 50.0% | |
| ! | AAGGTTGGCTAACGAGAGGT+TGG | - | chr1_2:37467305-37467324 | Msa0069220:CDS | 50.0% |
| GAGTTGCAAACAAATGCCGC+AGG | - | chr1_2:37467348-37467367 | Msa0069220:CDS | 50.0% | |
| TCCCGTCTCATCACAGTCAC+AGG | - | chr1_2:37464862-37464881 | Msa0069220:three_prime_UTR | 55.0% | |
| !! | GGGATTCGTGGTGTTGCGTT+AGG | - | chr1_2:37465490-37465509 | Msa0069220:CDS | 55.0% |
| GCCTGGAACCTCATTACAGC+CGG | - | chr1_2:37465611-37465630 | Msa0069220:intron | 55.0% | |
| ACCGGCTGTAATGAGGTTCC+AGG | + | chr1_2:37465615-37465634 | None:intergenic | 55.0% | |
| AATTCCCTGGGACCCCATAC+TGG | + | chr1_2:37465816-37465835 | None:intergenic | 55.0% | |
| GCTTAAGGGTGACCCAAGTG+AGG | - | chr1_2:37466652-37466671 | Msa0069220:intron | 55.0% | |
| ! | CTGACCCCATTGAGGCATCT+AGG | - | chr1_2:37466919-37466938 | Msa0069220:intron | 55.0% |
| CCGTCTCCTAGATGCCTCAA+TGG | + | chr1_2:37466928-37466947 | None:intergenic | 55.0% | |
| !! | CCGAGCACTGGAAGAAAGGT+TGG | - | chr1_2:37467290-37467309 | Msa0069220:intron | 55.0% |
| ! | ACGAGAGGTTGGCTACTTCG+CGG | - | chr1_2:37467316-37467335 | Msa0069220:CDS | 55.0% |
| CGAGGTAGGTGAGAGCGGAA+GGG | + | chr1_2:37465076-37465095 | None:intergenic | 60.0% | |
| GAGAGCGAGGTAGGTGAGAG+CGG | + | chr1_2:37465081-37465100 | None:intergenic | 60.0% | |
| TTGAGCCAGTATGGGGTCCC+AGG | - | chr1_2:37465808-37465827 | Msa0069220:CDS | 60.0% | |
| TGAGCCAGTATGGGGTCCCA+GGG | - | chr1_2:37465809-37465828 | Msa0069220:CDS | 60.0% | |
| ! | GCCAGGTTCTGACCCCATTG+AGG | - | chr1_2:37466911-37466930 | Msa0069220:intron | 60.0% |
| GCCTCAATGGGGTCAGAACC+TGG | + | chr1_2:37466915-37466934 | None:intergenic | 60.0% | |
| !! | AGAAAGAGGTGCCCGAGCAC+TGG | - | chr1_2:37467278-37467297 | Msa0069220:intron | 60.0% |
| !! | GTGCCCGAGCACTGGAAGAA+AGG | - | chr1_2:37467286-37467305 | Msa0069220:intron | 60.0% |
| TTGGCTACTTCGCGGAGTGC+AGG | - | chr1_2:37467324-37467343 | Msa0069220:CDS | 60.0% | |
| TGGCTACTTCGCGGAGTGCA+GGG | - | chr1_2:37467325-37467344 | Msa0069220:CDS | 60.0% | |
| GCGAGGTAGGTGAGAGCGGA+AGG | + | chr1_2:37465077-37465096 | None:intergenic | 65.0% | |
| GGCGGGAATGAGAGCGAGGT+AGG | + | chr1_2:37465090-37465109 | None:intergenic | 65.0% | |
| ACCTCGCTCTCATTCCCGCC+AGG | - | chr1_2:37465090-37465109 | Msa0069220:CDS | 65.0% | |
| ACCTGGCGGGAATGAGAGCG+AGG | + | chr1_2:37465094-37465113 | None:intergenic | 65.0% | |
| GGCTACTTCGCGGAGTGCAG+GGG | - | chr1_2:37467326-37467345 | Msa0069220:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37464726 | 37467679 | 37464726 | ID=Msa0069220;Name=Msa0069220 |
| chr1_2 | mRNA | 37464726 | 37467679 | 37464726 | ID=Msa0069220-mRNA-1;Parent=Msa0069220;Name=Msa0069220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=119|1|1|1|1|1|8|299|318 |
| chr1_2 | exon | 37464726 | 37465127 | 37464726 | ID=Msa0069220-mRNA-1:exon:11814;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37465459 | 37465596 | 37465459 | ID=Msa0069220-mRNA-1:exon:11813;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37465694 | 37465896 | 37465694 | ID=Msa0069220-mRNA-1:exon:11812;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37466014 | 37466119 | 37466014 | ID=Msa0069220-mRNA-1:exon:11811;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37466474 | 37466640 | 37466474 | ID=Msa0069220-mRNA-1:exon:11810;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37466747 | 37466807 | 37466747 | ID=Msa0069220-mRNA-1:exon:11809;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37467294 | 37467433 | 37467294 | ID=Msa0069220-mRNA-1:exon:11808;Parent=Msa0069220-mRNA-1 |
| chr1_2 | exon | 37467522 | 37467679 | 37467522 | ID=Msa0069220-mRNA-1:exon:11807;Parent=Msa0069220-mRNA-1 |
| chr1_2 | five_prime_UTR | 37467561 | 37467679 | 37467561 | ID=Msa0069220-mRNA-1:five_prime_utr;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37467522 | 37467560 | 37467522 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37467294 | 37467433 | 37467294 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37466747 | 37466807 | 37466747 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37466474 | 37466640 | 37466474 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37466014 | 37466119 | 37466014 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37465694 | 37465896 | 37465694 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37465459 | 37465596 | 37465459 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | CDS | 37465025 | 37465127 | 37465025 | ID=Msa0069220-mRNA-1:cds;Parent=Msa0069220-mRNA-1 |
| chr1_2 | three_prime_UTR | 37464726 | 37465024 | 37464726 | ID=Msa0069220-mRNA-1:three_prime_utr;Parent=Msa0069220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
