Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934940 | XP_013450827.1 | 98.681 | 379 | 5 | 0 | 1 | 379 | 1 | 379 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016440 | Msa0934940 | 0.807833 | 4.166178e-50 | -8.615850e-47 |
| Msa0069220 | Msa0934940 | 0.809026 | 2.318845e-50 | -8.615850e-47 |
| Msa0774810 | Msa0934940 | 0.832752 | 7.902499e-56 | -8.615850e-47 |
| Msa0819670 | Msa0934940 | -0.800694 | 1.278073e-48 | -8.615850e-47 |
| Msa0483290 | Msa0934940 | 0.902993 | 5.488609e-79 | -8.615850e-47 |
| Msa0873930 | Msa0934940 | -0.824655 | 7.176019e-54 | -8.615850e-47 |
| Msa0906670 | Msa0934940 | -0.822309 | 2.538118e-53 | -8.615850e-47 |
| Msa0934940 | Msa0972090 | 0.888502 | 5.580388e-73 | -8.615850e-47 |
| Msa0934940 | Msa1041550 | -0.804188 | 2.434809e-49 | -8.615850e-47 |
| Msa0934940 | Msa1081530 | -0.802121 | 6.518388e-49 | -8.615850e-47 |
| Msa0934940 | Msa1166450 | -0.805677 | 1.189468e-49 | -8.615850e-47 |
| Msa0934940 | Msa1170640 | 0.902441 | 9.662381e-79 | -8.615850e-47 |
| Msa0934940 | Msa1228160 | 0.800897 | 1.161449e-48 | -8.615850e-47 |
| Msa0934940 | Msa1357720 | -0.818367 | 2.034052e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934940 | MtrunA17_Chr6g0451021 | 98.681 | 379 | 5 | 0 | 1 | 379 | 1 | 379 | 0.0 | 757 |
| Msa0934940 | MtrunA17_Chr2g0295931 | 36.304 | 303 | 133 | 4 | 75 | 372 | 47 | 294 | 6.73e-56 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0934940 | AT5G14790.1 | 54.427 | 384 | 123 | 8 | 1 | 379 | 1 | 337 | 1.34e-118 | 348 |
| Msa0934940 | AT3G01450.1 | 52.094 | 382 | 122 | 5 | 1 | 379 | 1 | 324 | 2.82e-113 | 333 |
| Msa0934940 | AT3G01450.2 | 52.094 | 382 | 122 | 5 | 1 | 379 | 1 | 324 | 2.82e-113 | 333 |
| Msa0934940 | AT4G15830.1 | 38.511 | 309 | 133 | 4 | 68 | 371 | 38 | 294 | 9.32e-61 | 198 |
| Msa0934940 | AT3G18530.1 | 45.487 | 277 | 141 | 5 | 1 | 276 | 1 | 268 | 1.23e-53 | 181 |
| Msa0934940 | AT3G18530.3 | 69.118 | 136 | 42 | 0 | 115 | 250 | 9 | 144 | 4.83e-51 | 172 |
| Msa0934940 | AT3G18530.2 | 67.200 | 125 | 41 | 0 | 126 | 250 | 1 | 125 | 1.78e-43 | 151 |
Find 102 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGGTATGGTTGCAATTT+TGG | 0.187233 | 6_3:+5211847 | None:intergenic |
| TGATCTTATAATAGATTCTT+TGG | 0.215909 | 6_3:-5212095 | Msa0934940:CDS |
| TCACTCTTCCTTTCAGTTGC+AGG | 0.227531 | 6_3:+5212892 | None:intergenic |
| TCTGATACTGTCTCGGTCTT+TGG | 0.273864 | 6_3:+5210886 | None:intergenic |
| TCTGATACTGTCTCGGTCTT+TGG | 0.273864 | 6_3:+5210913 | None:intergenic |
| CAGGAAGCTGGTCGCTCAAT+TGG | 0.275487 | 6_3:+5211031 | None:intergenic |
| TTGGTTTCCCCACATGTTAA+TGG | 0.287937 | 6_3:-5212778 | Msa0934940:CDS |
| CATTTGCATGTGAGTGTGTA+TGG | 0.329105 | 6_3:+5214653 | None:intergenic |
| TCAGATACTGTCACGGTCTC+TGG | 0.338960 | 6_3:+5210805 | None:intergenic |
| AGTACAGCTTGAGCACTTAA+AGG | 0.343680 | 6_3:+5210727 | None:intergenic |
| GAGAATGAAATTGAAAAGAG+TGG | 0.354836 | 6_3:+5214511 | None:intergenic |
| TCAGATACTGTCACGGTCTC+TGG | 0.360081 | 6_3:+5210832 | None:intergenic |
| TTCTCGAAGTGTTCCACAAC+TGG | 0.360569 | 6_3:-5211782 | Msa0934940:intron |
| CAATAAATAGAGAGAGATTT+GGG | 0.365061 | 6_3:+5214624 | None:intergenic |
| TATTAAGTGGAAACGGTAAT+AGG | 0.365212 | 6_3:+5214597 | None:intergenic |
| GCAATAAATAGAGAGAGATT+TGG | 0.365718 | 6_3:+5214623 | None:intergenic |
| CCCACATGTTAATGGAAATC+AGG | 0.366358 | 6_3:-5212770 | Msa0934940:CDS |
| AGCAGCTCGAACCCTACTTC+TGG | 0.366714 | 6_3:-5210998 | Msa0934940:CDS |
| CAAGATTCTGTCGCGATCTC+TGG | 0.369704 | 6_3:+5210778 | None:intergenic |
| CAGAGATCGCGACAGAATCT+TGG | 0.372783 | 6_3:-5210777 | Msa0934940:CDS |
| AATAGATTCTTTGGATCCTC+TGG | 0.383460 | 6_3:-5212086 | Msa0934940:intron |
| AATCTCTCTCTATTTATTGC+CGG | 0.387022 | 6_3:-5214620 | Msa0934940:five_prime_UTR |
| AGTGGCTGCTGGCACGAGAT+TGG | 0.387556 | 6_3:+5210948 | None:intergenic |
| GCTGATTCTGTTGTAGAGAT+TGG | 0.388850 | 6_3:-5212739 | Msa0934940:CDS |
| TAGGGTTCGAGCTGCTTCTC+TGG | 0.400244 | 6_3:+5211005 | None:intergenic |
| CTCTTTCTTTCTTCACTCGT+CGG | 0.409712 | 6_3:-5214553 | Msa0934940:five_prime_UTR |
| GTGGCTGCTGGCACGAGATT+GGG | 0.420543 | 6_3:+5210949 | None:intergenic |
| TGTTAACAGACCCTCTTAGC+TGG | 0.450176 | 6_3:-5212450 | Msa0934940:intron |
| ACAAGTAGTCATTGATATCA+AGG | 0.452524 | 6_3:+5211891 | None:intergenic |
| CTTGAGCACTTAAAGGAGAA+AGG | 0.455045 | 6_3:+5210734 | None:intergenic |
| AAGACCCTCCCGTGCAATGC+TGG | 0.466560 | 6_3:+5210696 | None:intergenic |
| AGGAAGCTGGTCGCTCAATT+GGG | 0.467947 | 6_3:+5211032 | None:intergenic |
| AGAGATCGCGACAGAATCTT+GGG | 0.469637 | 6_3:-5210776 | Msa0934940:CDS |
| TGAAACGACGGCGTATTAAG+TGG | 0.472897 | 6_3:+5214584 | None:intergenic |
| AGCATTGTCAACAGGAGGCT+TGG | 0.476134 | 6_3:+5212846 | None:intergenic |
| CTGGACTAGACTCAAAGGAT+TGG | 0.485003 | 6_3:-5212431 | Msa0934940:CDS |
| GCAGAAGGCATAAATACATA+TGG | 0.486424 | 6_3:-5211084 | Msa0934940:CDS |
| CTTCTCTGGACTCAGGAAGC+TGG | 0.493252 | 6_3:+5211019 | None:intergenic |
| TGCATCCTCTGATACTGTCT+CGG | 0.499453 | 6_3:+5210879 | None:intergenic |
| TGGACTAGACTCAAAGGATT+GGG | 0.500742 | 6_3:-5212430 | Msa0934940:CDS |
| TGATGCCTTTGCACGAACAC+GGG | 0.509631 | 6_3:+5211813 | None:intergenic |
| ATTTGCATGTGAGTGTGTAT+GGG | 0.511157 | 6_3:+5214654 | None:intergenic |
| AGACTCAAAGGATTGGGTCC+TGG | 0.512503 | 6_3:-5212424 | Msa0934940:CDS |
| TTGTTTGGATAGGGTGCAGA+AGG | 0.515020 | 6_3:-5211099 | Msa0934940:intron |
| TATCTCAGACTATAGCTGAC+CGG | 0.515438 | 6_3:-5212952 | Msa0934940:intron |
| TTGATGCCTTTGCACGAACA+CGG | 0.516013 | 6_3:+5211812 | None:intergenic |
| TTGAGTCTAGTCCAGCTAAG+AGG | 0.519140 | 6_3:+5212439 | None:intergenic |
| CCAAGGCCCTGAAAAGTCCT+AGG | 0.528718 | 6_3:-5212174 | Msa0934940:CDS |
| GCTTCTTCTCAAGTCTTCAC+AGG | 0.533896 | 6_3:-5211947 | Msa0934940:CDS |
| TGGATCCTCTGATACTGTCT+CGG | 0.534414 | 6_3:+5210906 | None:intergenic |
| GAAGAGTGAGGGCTCTGGTA+AGG | 0.534884 | 6_3:-5212878 | Msa0934940:CDS |
| TCCTCAGATACAGTGGCTGC+TGG | 0.535902 | 6_3:+5210937 | None:intergenic |
| AGAATGAAATTGAAAAGAGT+GGG | 0.539799 | 6_3:+5214512 | None:intergenic |
| CAGTGCTGTCTCCGACATCC+CGG | 0.542785 | 6_3:+5212933 | None:intergenic |
| TGTGACCAGCATTGCACGGG+AGG | 0.542793 | 6_3:-5210701 | Msa0934940:CDS |
| GGGTGCTTGTGCTTAAGGTA+TGG | 0.543193 | 6_3:+5211835 | None:intergenic |
| TTCGTGTGACCAGCATTGCA+CGG | 0.548504 | 6_3:-5210705 | Msa0934940:CDS |
| TGAGTCTAGTCCAGCTAAGA+GGG | 0.551003 | 6_3:+5212440 | None:intergenic |
| ATCTCAGACTATAGCTGACC+GGG | 0.551091 | 6_3:-5212951 | Msa0934940:intron |
| ATAATATTCCTGCAACTGAA+AGG | 0.555415 | 6_3:-5212900 | Msa0934940:CDS |
| GAAAGGAAGAGTGAGGGCTC+TGG | 0.555889 | 6_3:-5212883 | Msa0934940:CDS |
| AAAGGTACTCATACCAGTTG+TGG | 0.558875 | 6_3:+5211769 | None:intergenic |
| GTGAAGAAAGAAAGAGACAA+AGG | 0.560248 | 6_3:+5214560 | None:intergenic |
| GCCTGATTTCCATTAACATG+TGG | 0.560884 | 6_3:+5212769 | None:intergenic |
| CGAGCTGCTTCTCTGGACTC+AGG | 0.564410 | 6_3:+5211012 | None:intergenic |
| ACTATAGCTGACCGGGATGT+CGG | 0.573760 | 6_3:-5212944 | Msa0934940:exon |
| TCGTGTGACCAGCATTGCAC+GGG | 0.575627 | 6_3:-5210704 | Msa0934940:CDS |
| ATCTCTACAACAGAATCAGC+AGG | 0.577215 | 6_3:+5212742 | None:intergenic |
| AAGTGGAAACGGTAATAGGC+CGG | 0.580584 | 6_3:+5214601 | None:intergenic |
| TCATTAGCATTGTCAACAGG+AGG | 0.580927 | 6_3:+5212841 | None:intergenic |
| CCTGATTTCCATTAACATGT+GGG | 0.582748 | 6_3:+5212770 | None:intergenic |
| GATGTCGGAGACAGCACTGA+AGG | 0.584563 | 6_3:-5212929 | Msa0934940:CDS |
| AATGTCAGCAGATGTCATAA+TGG | 0.592994 | 6_3:+5212132 | None:intergenic |
| GCCAGCAGCCACTGTATCTG+AGG | 0.601163 | 6_3:-5210938 | Msa0934940:CDS |
| CTTAGCTGGACTAGACTCAA+AGG | 0.601990 | 6_3:-5212436 | Msa0934940:CDS |
| GACGGCGTATTAAGTGGAAA+CGG | 0.603726 | 6_3:+5214590 | None:intergenic |
| GATGCCTTTGCACGAACACG+GGG | 0.604224 | 6_3:+5211814 | None:intergenic |
| TGGATCCTCTGATACTGTCA+CGG | 0.608295 | 6_3:+5210852 | None:intergenic |
| GTGACCAGCATTGCACGGGA+GGG | 0.615180 | 6_3:-5210700 | Msa0934940:CDS |
| TTTGCATGTGAGTGTGTATG+GGG | 0.616888 | 6_3:+5214655 | None:intergenic |
| CTGATTTCCATTAACATGTG+GGG | 0.618242 | 6_3:+5212771 | None:intergenic |
| TGCAACTGAAAGGAAGAGTG+AGG | 0.618257 | 6_3:-5212890 | Msa0934940:CDS |
| AACATGTGGGGAAACCAAAG+AGG | 0.636905 | 6_3:+5212783 | None:intergenic |
| TGTGATCACACGTATTGCCA+AGG | 0.639205 | 6_3:-5212191 | Msa0934940:CDS |
| TACAACAGAATCAGCAGGCA+CGG | 0.640260 | 6_3:+5212747 | None:intergenic |
| GGACAAACGCTTTGTATGTG+AGG | 0.643274 | 6_3:-5211926 | Msa0934940:CDS |
| AGAAGAAGAATGAGTCAACT+CGG | 0.646400 | 6_3:+5214478 | None:intergenic |
| GCAACTGAAAGGAAGAGTGA+GGG | 0.647825 | 6_3:-5212889 | Msa0934940:CDS |
| TGGTTCCTCAGATACTGTCA+CGG | 0.648009 | 6_3:+5210798 | None:intergenic |
| TATTTAGAGTATCACAAACC+AGG | 0.649406 | 6_3:+5212406 | None:intergenic |
| CTTTGGATCCTCAGATACAG+TGG | 0.658342 | 6_3:+5210930 | None:intergenic |
| AAAGACCGAGACAGTATCAG+AGG | 0.660252 | 6_3:-5210884 | Msa0934940:CDS |
| AAAGACCGAGACAGTATCAG+AGG | 0.660252 | 6_3:-5210911 | Msa0934940:CDS |
| TGGATCCTCAGATACTGTCA+CGG | 0.660853 | 6_3:+5210825 | None:intergenic |
| AGAGACCGTGACAGTATCTG+AGG | 0.663328 | 6_3:-5210830 | Msa0934940:CDS |
| AAATGTTGATGCTTGTGTCA+AGG | 0.672297 | 6_3:-5212668 | Msa0934940:intron |
| AGAGACCGTGACAGTATCTG+AGG | 0.675746 | 6_3:-5210803 | Msa0934940:CDS |
| AAAGACCGTGACAGTATCAG+AGG | 0.679340 | 6_3:-5210857 | Msa0934940:CDS |
| AGTACCGAATGAAGAAAATG+CGG | 0.683323 | 6_3:+5214429 | None:intergenic |
| AGAGACAAAGGATGAAACGA+CGG | 0.693825 | 6_3:+5214572 | None:intergenic |
| TTGCATGTGAGTGTGTATGG+GGG | 0.755086 | 6_3:+5214656 | None:intergenic |
| ATGCCTTTGCACGAACACGG+GGG | 0.759816 | 6_3:+5211815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTAGAATTTTGT+TGG | - | chr6_3:5211522-5211541 | Msa0934940:intron | 10.0% |
| !!! | AATTTTTTTAGAATTTTGTT+GGG | - | chr6_3:5211523-5211542 | Msa0934940:intron | 10.0% |
| !!! | TAAACAAATTAATATTTTCA+GGG | + | chr6_3:5214023-5214042 | None:intergenic | 10.0% |
| !!! | ATAAACAAATTAATATTTTC+AGG | + | chr6_3:5214024-5214043 | None:intergenic | 10.0% |
| !!! | GAAAATATTAATTTGTTTAT+TGG | - | chr6_3:5214024-5214043 | Msa0934940:intron | 10.0% |
| !! | CAGAAAATAAATCAAAAAAT+TGG | + | chr6_3:5211362-5211381 | None:intergenic | 15.0% |
| !!! | TAAAATAATTTTTTGCTCTA+TGG | - | chr6_3:5212191-5212210 | Msa0934940:CDS | 15.0% |
| !!! | TTTTACAGAAGTTAAATAAA+TGG | - | chr6_3:5212324-5212343 | Msa0934940:intron | 15.0% |
| !!! | ATTATTTTATCCATCTTTTT+TGG | - | chr6_3:5212704-5212723 | Msa0934940:CDS | 15.0% |
| !!! | TTATTTTATCCATCTTTTTT+GGG | - | chr6_3:5212705-5212724 | Msa0934940:CDS | 15.0% |
| !! | TATATAAAGCTAATAATCAA+AGG | + | chr6_3:5212826-5212845 | None:intergenic | 15.0% |
| !! | TAAATTATTCATATGCTATA+TGG | - | chr6_3:5213121-5213140 | Msa0934940:intron | 15.0% |
| !! | AAAACAAACGTAAAAAATTA+TGG | + | chr6_3:5213786-5213805 | None:intergenic | 15.0% |
| !!! | ATAATTTTTTACGTTTGTTT+TGG | - | chr6_3:5213785-5213804 | Msa0934940:intron | 15.0% |
| !!! | TGAATTTTTGTGAATATTTG+TGG | - | chr6_3:5211163-5211182 | Msa0934940:intron | 20.0% |
| !! | AATCAAATGATTGTAATGTT+AGG | - | chr6_3:5211389-5211408 | Msa0934940:intron | 20.0% |
| !! | ATTGTAATTTGAAGAGATAT+TGG | - | chr6_3:5212147-5212166 | Msa0934940:CDS | 20.0% |
| !!! | TTTTAAGTTCTAAACATTTC+TGG | + | chr6_3:5212176-5212195 | None:intergenic | 20.0% |
| !! | TGATCTTATAATAGATTCTT+TGG | - | chr6_3:5213253-5213272 | Msa0934940:intron | 20.0% |
| !! | GAAGCTTTCTTAAATAATTT+GGG | + | chr6_3:5213845-5213864 | None:intergenic | 20.0% |
| !! | AGAAGCTTTCTTAAATAATT+TGG | + | chr6_3:5213846-5213865 | None:intergenic | 20.0% |
| !!! | CAATGATTTTAATTGATACA+TGG | - | chr6_3:5213991-5214010 | Msa0934940:intron | 20.0% |
| !! | TAAACTGCTAGTATTAATAT+TGG | - | chr6_3:5214085-5214104 | Msa0934940:intron | 20.0% |
| ! | CAATAAATAGAGAGAGATTT+GGG | + | chr6_3:5210727-5210746 | None:intergenic | 25.0% |
| ! | AGAATGAAATTGAAAAGAGT+GGG | + | chr6_3:5210839-5210858 | None:intergenic | 25.0% |
| ! | AATCGAATGATTGTAATGTT+AGG | - | chr6_3:5211192-5211211 | Msa0934940:intron | 25.0% |
| !! | TGATTGTAATGTTAGGTTTT+AGG | - | chr6_3:5211199-5211218 | Msa0934940:intron | 25.0% |
| !!! | TTGATTTTTGAGTTGAACTT+TGG | - | chr6_3:5211315-5211334 | Msa0934940:intron | 25.0% |
| ! | TGATTGTAATGTTAGGATTT+AGG | - | chr6_3:5211396-5211415 | Msa0934940:intron | 25.0% |
| !! | GATTTAGGATTGAAATGTAA+GGG | - | chr6_3:5211411-5211430 | Msa0934940:intron | 25.0% |
| !! | GATATCTTAGATTTAGAACT+AGG | - | chr6_3:5211839-5211858 | Msa0934940:CDS | 25.0% |
| !!! | AGCAGATCATTTTTTGTTTT+TGG | - | chr6_3:5211919-5211938 | Msa0934940:CDS | 25.0% |
| !!! | TTAGAGTGTTGTATTTGAAA+TGG | - | chr6_3:5211997-5212016 | Msa0934940:intron | 25.0% |
| ! | AATAAATCGAATTGAGAACT+AGG | - | chr6_3:5212102-5212121 | Msa0934940:CDS | 25.0% |
| ! | TACAGAAGTTAAATAAATGG+TGG | - | chr6_3:5212327-5212346 | Msa0934940:intron | 25.0% |
| !!! | AAGTTGATAACCATTGAAAT+TGG | - | chr6_3:5212751-5212770 | Msa0934940:CDS | 25.0% |
| !!! | TGACATAAAATAGGTATTGA+AGG | + | chr6_3:5212854-5212873 | None:intergenic | 25.0% |
| ! | TAACGATACTGACATAAAAT+AGG | + | chr6_3:5212863-5212882 | None:intergenic | 25.0% |
| ! | CCTTATGAAAAATAGACAAA+CGG | + | chr6_3:5212975-5212994 | None:intergenic | 25.0% |
| !! | AATGTTTTCTGATTGAAAGA+TGG | - | chr6_3:5213037-5213056 | Msa0934940:intron | 25.0% |
| !! | AATATGCAATGGTTTTTGTT+TGG | - | chr6_3:5213085-5213104 | Msa0934940:intron | 25.0% |
| ! | TTGCAAATTTAATAGCACAA+AGG | + | chr6_3:5213303-5213322 | None:intergenic | 25.0% |
| ! | GTAAATTGACATGTTCTTAA+TGG | - | chr6_3:5213361-5213380 | Msa0934940:intron | 25.0% |
| !!! | TAATTGGCTTCCTAAAATTT+TGG | + | chr6_3:5213720-5213739 | None:intergenic | 25.0% |
| ! | GTCTATGTTAAATTTGTGAA+TGG | - | chr6_3:5213869-5213888 | Msa0934940:intron | 25.0% |
| !!! | CTATTTGATTTTGCTATGTT+AGG | + | chr6_3:5213943-5213962 | None:intergenic | 25.0% |
| ! | ACATAGCAAAATCAAATAGA+AGG | - | chr6_3:5213944-5213963 | Msa0934940:intron | 25.0% |
| !! | TTAACATCTTCTCTTTTGTT+TGG | - | chr6_3:5214234-5214253 | Msa0934940:intron | 25.0% |
| GCAATAAATAGAGAGAGATT+TGG | + | chr6_3:5210728-5210747 | None:intergenic | 30.0% | |
| AATCTCTCTCTATTTATTGC+CGG | - | chr6_3:5210728-5210747 | Msa0934940:CDS | 30.0% | |
| TATTAAGTGGAAACGGTAAT+AGG | + | chr6_3:5210754-5210773 | None:intergenic | 30.0% | |
| GAGAATGAAATTGAAAAGAG+TGG | + | chr6_3:5210840-5210859 | None:intergenic | 30.0% | |
| AGTAATTACAGTGAATCGTA+CGG | + | chr6_3:5210978-5210997 | None:intergenic | 30.0% | |
| ! | GGATTTAGGATTGAAATGTA+AGG | - | chr6_3:5211410-5211429 | Msa0934940:intron | 30.0% |
| AGTACAAAATCAAAGCAACT+AGG | + | chr6_3:5211565-5211584 | None:intergenic | 30.0% | |
| !! | TGAAAGTTCAGTTCTAAGAT+TGG | - | chr6_3:5211750-5211769 | Msa0934940:intron | 30.0% |
| !!! | GTTGCAATCATTGATTTTCT+TGG | - | chr6_3:5211784-5211803 | Msa0934940:CDS | 30.0% |
| ! | ATGGTAGTGTAATTGTGATT+TGG | - | chr6_3:5211873-5211892 | Msa0934940:CDS | 30.0% |
| !! | AATTGTGATTTGGTGAGATA+TGG | - | chr6_3:5211883-5211902 | Msa0934940:CDS | 30.0% |
| !!! | TTTGCAGTAGTTGTTTTTCT+TGG | - | chr6_3:5212048-5212067 | Msa0934940:intron | 30.0% |
| ! | GCTATAGTCTGAGATAAAAA+AGG | + | chr6_3:5212392-5212411 | None:intergenic | 30.0% |
| ATAATATTCCTGCAACTGAA+AGG | - | chr6_3:5212448-5212467 | Msa0934940:intron | 30.0% | |
| ! | TTTTCATTAGCATTGTCAAC+AGG | + | chr6_3:5212513-5212532 | None:intergenic | 30.0% |
| ! | TATTTAGAGTATCACAAACC+AGG | + | chr6_3:5212945-5212964 | None:intergenic | 30.0% |
| !! | CCGTTTGTCTATTTTTCATA+AGG | - | chr6_3:5212972-5212991 | Msa0934940:intron | 30.0% |
| TACCATTGCTTAATATGCAA+TGG | - | chr6_3:5213074-5213093 | Msa0934940:intron | 30.0% | |
| AACCATTGCATATTAAGCAA+TGG | + | chr6_3:5213079-5213098 | None:intergenic | 30.0% | |
| TCATATGCTATATGGTAAAC+AGG | - | chr6_3:5213129-5213148 | Msa0934940:intron | 30.0% | |
| CATATGCTATATGGTAAACA+GGG | - | chr6_3:5213130-5213149 | Msa0934940:intron | 30.0% | |
| ATATGCTATATGGTAAACAG+GGG | - | chr6_3:5213131-5213150 | Msa0934940:intron | 30.0% | |
| CAAATTTAATAGCACAAAGG+AGG | + | chr6_3:5213300-5213319 | None:intergenic | 30.0% | |
| AATTGACATGTTCTTAATGG+TGG | - | chr6_3:5213364-5213383 | Msa0934940:intron | 30.0% | |
| ACAAGTAGTCATTGATATCA+AGG | + | chr6_3:5213460-5213479 | None:intergenic | 30.0% | |
| !! | ATTTTGGCAGCAATGAAATA+GGG | + | chr6_3:5213488-5213507 | None:intergenic | 30.0% |
| !! | AATTTTGGCAGCAATGAAAT+AGG | + | chr6_3:5213489-5213508 | None:intergenic | 30.0% |
| ! | TTAAGGTATGGTTGCAATTT+TGG | + | chr6_3:5213504-5213523 | None:intergenic | 30.0% |
| AAGAAGAGCAAAAGTCATAA+AGG | + | chr6_3:5213600-5213619 | None:intergenic | 30.0% | |
| ATCACAGAAAATCATTTCGT+GGG | + | chr6_3:5213676-5213695 | None:intergenic | 30.0% | |
| TTATGGAATTTCATCATCAG+TGG | + | chr6_3:5213769-5213788 | None:intergenic | 30.0% | |
| !! | ATATCTGTTTTGTTCTACCA+TGG | - | chr6_3:5214112-5214131 | Msa0934940:intron | 30.0% |
| TGCTCTGCTAGTATTAATAT+TGG | - | chr6_3:5214137-5214156 | Msa0934940:intron | 30.0% | |
| GCTAGGAAGGTTAATAAATA+TGG | - | chr6_3:5214180-5214199 | Msa0934940:intron | 30.0% | |
| !! | ATCTTCTCTTTTGTTTGGAT+AGG | - | chr6_3:5214239-5214258 | Msa0934940:intron | 30.0% |
| !! | TCTTCTCTTTTGTTTGGATA+GGG | - | chr6_3:5214240-5214259 | Msa0934940:intron | 30.0% |
| ATTTGCATGTGAGTGTGTAT+GGG | + | chr6_3:5210697-5210716 | None:intergenic | 35.0% | |
| GTGAAGAAAGAAAGAGACAA+AGG | + | chr6_3:5210791-5210810 | None:intergenic | 35.0% | |
| AGAAGAAGAATGAGTCAACT+CGG | + | chr6_3:5210873-5210892 | None:intergenic | 35.0% | |
| ! | TTCTCCGCATTTTCTTCATT+CGG | - | chr6_3:5210915-5210934 | Msa0934940:CDS | 35.0% |
| ! | AGTACCGAATGAAGAAAATG+CGG | + | chr6_3:5210922-5210941 | None:intergenic | 35.0% |
| AAATTGGCACAGTAATCACA+CGG | + | chr6_3:5211346-5211365 | None:intergenic | 35.0% | |
| GAACTAGGAAATTAGAGCAA+TGG | - | chr6_3:5211854-5211873 | Msa0934940:CDS | 35.0% | |
| GAAATGGAAGTTCAGTTCTA+AGG | - | chr6_3:5212013-5212032 | Msa0934940:intron | 35.0% | |
| GAACTAGGAAATAAGAGCAA+TGG | - | chr6_3:5212117-5212136 | Msa0934940:CDS | 35.0% | |
| GAAGAAAAACTGTTCCTCTT+TGG | - | chr6_3:5212551-5212570 | Msa0934940:intron | 35.0% | |
| CTGATTTCCATTAACATGTG+GGG | + | chr6_3:5212580-5212599 | None:intergenic | 35.0% | |
| CCTGATTTCCATTAACATGT+GGG | + | chr6_3:5212581-5212600 | None:intergenic | 35.0% | |
| AAATGTTGATGCTTGTGTCA+AGG | - | chr6_3:5212680-5212699 | Msa0934940:CDS | 35.0% | |
| !!! | TATCCATCTTTTTTGGGTAG+AGG | - | chr6_3:5212711-5212730 | Msa0934940:CDS | 35.0% |
| !!! | ATCCATCTTTTTTGGGTAGA+GGG | - | chr6_3:5212712-5212731 | Msa0934940:CDS | 35.0% |
| GATAACCATTGAAATTGGTG+TGG | - | chr6_3:5212756-5212775 | Msa0934940:CDS | 35.0% | |
| TTGAACCACACCAATTTCAA+TGG | + | chr6_3:5212764-5212783 | None:intergenic | 35.0% | |
| GAATTTAATGAAACACCCCA+AGG | + | chr6_3:5212789-5212808 | None:intergenic | 35.0% | |
| TATGCTATATGGTAAACAGG+GGG | - | chr6_3:5213132-5213151 | Msa0934940:intron | 35.0% | |
| AATGTCAGCAGATGTCATAA+TGG | + | chr6_3:5213219-5213238 | None:intergenic | 35.0% | |
| ! | ATGACATCTGCTGACATTTT+CGG | - | chr6_3:5213221-5213240 | Msa0934940:intron | 35.0% |
| AATAGATTCTTTGGATCCTC+TGG | - | chr6_3:5213262-5213281 | Msa0934940:intron | 35.0% | |
| GTAATCTCAGAATACACTTG+TGG | - | chr6_3:5213336-5213355 | Msa0934940:intron | 35.0% | |
| ! | TTTTGGCAGCAATGAAATAG+GGG | + | chr6_3:5213487-5213506 | None:intergenic | 35.0% |
| CATCACAGAAAATCATTTCG+TGG | + | chr6_3:5213677-5213696 | None:intergenic | 35.0% | |
| ! | CACGAAATGATTTTCTGTGA+TGG | - | chr6_3:5213675-5213694 | Msa0934940:intron | 35.0% |
| ! | AGCGACGAAACCAAAATTTT+AGG | - | chr6_3:5213707-5213726 | Msa0934940:intron | 35.0% |
| TCTTTGCCTGCATCATTAAT+TGG | + | chr6_3:5213736-5213755 | None:intergenic | 35.0% | |
| ! | TGTTTATTGGGAGCATGTAT+TGG | - | chr6_3:5214037-5214056 | Msa0934940:intron | 35.0% |
| TATATCTGTTCTGTTCAGCT+AGG | - | chr6_3:5214163-5214182 | Msa0934940:intron | 35.0% | |
| ! | GCAGAAGGCATAAATACATA+TGG | - | chr6_3:5214264-5214283 | Msa0934940:intron | 35.0% |
| TTTGCATGTGAGTGTGTATG+GGG | + | chr6_3:5210696-5210715 | None:intergenic | 40.0% | |
| CATTTGCATGTGAGTGTGTA+TGG | + | chr6_3:5210698-5210717 | None:intergenic | 40.0% | |
| AGAGACAAAGGATGAAACGA+CGG | + | chr6_3:5210779-5210798 | None:intergenic | 40.0% | |
| CTCTTTCTTTCTTCACTCGT+CGG | - | chr6_3:5210795-5210814 | Msa0934940:CDS | 40.0% | |
| CAGAAGCAAAAATGCAGAGA+GGG | + | chr6_3:5210953-5210972 | None:intergenic | 40.0% | |
| TCAGAAGCAAAAATGCAGAG+AGG | + | chr6_3:5210954-5210973 | None:intergenic | 40.0% | |
| ! | GCAGTGATTTGAAGTGTATC+TGG | - | chr6_3:5211707-5211726 | Msa0934940:intron | 40.0% |
| AAAAATGATCTGCTCGCTCA+TGG | + | chr6_3:5211913-5211932 | None:intergenic | 40.0% | |
| !! | TGGAAGTTCAGTTCTAAGGT+TGG | - | chr6_3:5212017-5212036 | Msa0934940:intron | 40.0% |
| !! | TTCAGTTCTAAGGTTGGAGT+TGG | - | chr6_3:5212023-5212042 | Msa0934940:intron | 40.0% |
| ! | GTTTGAGTTTCTCTTCTTGC+CGG | - | chr6_3:5212349-5212368 | Msa0934940:intron | 40.0% |
| ! | TTTGAGTTTCTCTTCTTGCC+GGG | - | chr6_3:5212350-5212369 | Msa0934940:intron | 40.0% |
| TATCTCAGACTATAGCTGAC+CGG | - | chr6_3:5212396-5212415 | Msa0934940:CDS | 40.0% | |
| TCATTAGCATTGTCAACAGG+AGG | + | chr6_3:5212510-5212529 | None:intergenic | 40.0% | |
| TTGGTTTCCCCACATGTTAA+TGG | - | chr6_3:5212570-5212589 | Msa0934940:intron | 40.0% | |
| CCCACATGTTAATGGAAATC+AGG | - | chr6_3:5212578-5212597 | Msa0934940:intron | 40.0% | |
| GCCTGATTTCCATTAACATG+TGG | + | chr6_3:5212582-5212601 | None:intergenic | 40.0% | |
| ATCTCTACAACAGAATCAGC+AGG | + | chr6_3:5212609-5212628 | None:intergenic | 40.0% | |
| ! | GCTGATTCTGTTGTAGAGAT+TGG | - | chr6_3:5212609-5212628 | Msa0934940:intron | 40.0% |
| ATTGGTGTGGTTCAATACCT+TGG | - | chr6_3:5212769-5212788 | Msa0934940:CDS | 40.0% | |
| TTGGTGTGGTTCAATACCTT+GGG | - | chr6_3:5212770-5212789 | Msa0934940:CDS | 40.0% | |
| ! | TGGACTAGACTCAAAGGATT+GGG | - | chr6_3:5212918-5212937 | Msa0934940:CDS | 40.0% |
| ATGCTATATGGTAAACAGGG+GGG | - | chr6_3:5213133-5213152 | Msa0934940:intron | 40.0% | |
| !! | GTTTTGATAACAGCACTCCT+AGG | + | chr6_3:5213194-5213213 | None:intergenic | 40.0% |
| GAGGAATTCTAACTTACCAG+AGG | + | chr6_3:5213281-5213300 | None:intergenic | 40.0% | |
| !! | AAAGGTACTCATACCAGTTG+TGG | + | chr6_3:5213582-5213601 | None:intergenic | 40.0% |
| AGGAAGCCAATTAATGATGC+AGG | - | chr6_3:5213727-5213746 | Msa0934940:intron | 40.0% | |
| GGAGCATGTATTGGATTTCT+AGG | - | chr6_3:5214046-5214065 | Msa0934940:intron | 40.0% | |
| ! | AATACTAGCAGAGCATTCCA+TGG | + | chr6_3:5214132-5214151 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGCTCCAGAAGTA+GGG | + | chr6_3:5214364-5214383 | None:intergenic | 40.0% |
| CTTGAGCACTTAAAGGAGAA+AGG | + | chr6_3:5214617-5214636 | None:intergenic | 40.0% | |
| AGTACAGCTTGAGCACTTAA+AGG | + | chr6_3:5214624-5214643 | None:intergenic | 40.0% | |
| TTGCATGTGAGTGTGTATGG+GGG | + | chr6_3:5210695-5210714 | None:intergenic | 45.0% | |
| AAGTGGAAACGGTAATAGGC+CGG | + | chr6_3:5210750-5210769 | None:intergenic | 45.0% | |
| GACGGCGTATTAAGTGGAAA+CGG | + | chr6_3:5210761-5210780 | None:intergenic | 45.0% | |
| TGAAACGACGGCGTATTAAG+TGG | + | chr6_3:5210767-5210786 | None:intergenic | 45.0% | |
| GGCAGACAGACAATTAAACC+CGG | + | chr6_3:5212371-5212390 | None:intergenic | 45.0% | |
| ATCTCAGACTATAGCTGACC+GGG | - | chr6_3:5212397-5212416 | Msa0934940:CDS | 45.0% | |
| TCACTCTTCCTTTCAGTTGC+AGG | + | chr6_3:5212459-5212478 | None:intergenic | 45.0% | |
| TGCAACTGAAAGGAAGAGTG+AGG | - | chr6_3:5212458-5212477 | Msa0934940:intron | 45.0% | |
| GCAACTGAAAGGAAGAGTGA+GGG | - | chr6_3:5212459-5212478 | Msa0934940:intron | 45.0% | |
| AACATGTGGGGAAACCAAAG+AGG | + | chr6_3:5212568-5212587 | None:intergenic | 45.0% | |
| TACAACAGAATCAGCAGGCA+CGG | + | chr6_3:5212604-5212623 | None:intergenic | 45.0% | |
| GTCCCTCTACCCAAAAAAGA+TGG | + | chr6_3:5212717-5212736 | None:intergenic | 45.0% | |
| !! | TTTTGGGTAGAGGGACTAGA+TGG | - | chr6_3:5212721-5212740 | Msa0934940:CDS | 45.0% |
| TTTGGGTAGAGGGACTAGAT+GGG | - | chr6_3:5212722-5212741 | Msa0934940:CDS | 45.0% | |
| TGGTGTGGTTCAATACCTTG+GGG | - | chr6_3:5212771-5212790 | Msa0934940:CDS | 45.0% | |
| TGTTAACAGACCCTCTTAGC+TGG | - | chr6_3:5212898-5212917 | Msa0934940:CDS | 45.0% | |
| TGAGTCTAGTCCAGCTAAGA+GGG | + | chr6_3:5212911-5212930 | None:intergenic | 45.0% | |
| TTGAGTCTAGTCCAGCTAAG+AGG | + | chr6_3:5212912-5212931 | None:intergenic | 45.0% | |
| ! | CTTAGCTGGACTAGACTCAA+AGG | - | chr6_3:5212912-5212931 | Msa0934940:CDS | 45.0% |
| ! | CTGGACTAGACTCAAAGGAT+TGG | - | chr6_3:5212917-5212936 | Msa0934940:CDS | 45.0% |
| TGTGATCACACGTATTGCCA+AGG | - | chr6_3:5213157-5213176 | Msa0934940:intron | 45.0% | |
| ! | AGCACTCCTAGGACTTTTCA+GGG | + | chr6_3:5213183-5213202 | None:intergenic | 45.0% |
| GCTTCTTCTCAAGTCTTCAC+AGG | - | chr6_3:5213401-5213420 | Msa0934940:intron | 45.0% | |
| GGACAAACGCTTTGTATGTG+AGG | - | chr6_3:5213422-5213441 | Msa0934940:intron | 45.0% | |
| TTGATGCCTTTGCACGAACA+CGG | + | chr6_3:5213539-5213558 | None:intergenic | 45.0% | |
| ! | TTCTCGAAGTGTTCCACAAC+TGG | - | chr6_3:5213566-5213585 | Msa0934940:intron | 45.0% |
| ATGATGCAGGCAAAGAACCT+TGG | - | chr6_3:5213740-5213759 | Msa0934940:intron | 45.0% | |
| TTCATCATCAGTGGTGACCA+AGG | + | chr6_3:5213760-5213779 | None:intergenic | 45.0% | |
| TCTGTTCTGTTCAGCTAGGA+AGG | - | chr6_3:5214167-5214186 | Msa0934940:intron | 45.0% | |
| ATTCAGTCGCAAACATAGGC+TGG | + | chr6_3:5214206-5214225 | None:intergenic | 45.0% | |
| CCACATTCAGTCGCAAACAT+AGG | + | chr6_3:5214210-5214229 | None:intergenic | 45.0% | |
| CCTATGTTTGCGACTGAATG+TGG | - | chr6_3:5214207-5214226 | Msa0934940:intron | 45.0% | |
| TTGTTTGGATAGGGTGCAGA+AGG | - | chr6_3:5214249-5214268 | Msa0934940:intron | 45.0% | |
| !!! | CGTTTTGAAGCTCCAGAAGT+AGG | + | chr6_3:5214365-5214384 | None:intergenic | 45.0% |
| CTTTGGATCCTCAGATACAG+TGG | + | chr6_3:5214421-5214440 | None:intergenic | 45.0% | |
| TCTGATACTGTCTCGGTCTT+TGG | + | chr6_3:5214438-5214457 | None:intergenic | 45.0% | |
| AAAGACCGAGACAGTATCAG+AGG | - | chr6_3:5214437-5214456 | Msa0934940:five_prime_UTR | 45.0% | |
| TGGATCCTCTGATACTGTCT+CGG | + | chr6_3:5214445-5214464 | None:intergenic | 45.0% | |
| TCTGATACTGTCTCGGTCTT+TGG | + | chr6_3:5214438-5214457 | None:intergenic | 45.0% | |
| AAAGACCGAGACAGTATCAG+AGG | - | chr6_3:5214437-5214456 | Msa0934940:five_prime_UTR | 45.0% | |
| TGCATCCTCTGATACTGTCT+CGG | + | chr6_3:5214472-5214491 | None:intergenic | 45.0% | |
| AAAGACCGTGACAGTATCAG+AGG | - | chr6_3:5214491-5214510 | Msa0934940:five_prime_UTR | 45.0% | |
| TGGATCCTCTGATACTGTCA+CGG | + | chr6_3:5214499-5214518 | None:intergenic | 45.0% | |
| TGGATCCTCAGATACTGTCA+CGG | + | chr6_3:5214526-5214545 | None:intergenic | 45.0% | |
| TGGTTCCTCAGATACTGTCA+CGG | + | chr6_3:5214553-5214572 | None:intergenic | 45.0% | |
| AGAGATCGCGACAGAATCTT+GGG | - | chr6_3:5214572-5214591 | Msa0934940:five_prime_UTR | 45.0% | |
| !!! | AAAATATTAATTTGTTTATT+GGG | - | chr6_3:5214025-5214044 | Msa0934940:intron | 5.0% |
| ACTATAGCTGACCGGGATGT+CGG | - | chr6_3:5212404-5212423 | Msa0934940:CDS | 50.0% | |
| AGCATTGTCAACAGGAGGCT+TGG | + | chr6_3:5212505-5212524 | None:intergenic | 50.0% | |
| AGACTCAAAGGATTGGGTCC+TGG | - | chr6_3:5212924-5212943 | Msa0934940:CDS | 50.0% | |
| ! | CAGCACTCCTAGGACTTTTC+AGG | + | chr6_3:5213184-5213203 | None:intergenic | 50.0% |
| GGGTGCTTGTGCTTAAGGTA+TGG | + | chr6_3:5213516-5213535 | None:intergenic | 50.0% | |
| TGATGCCTTTGCACGAACAC+GGG | + | chr6_3:5213538-5213557 | None:intergenic | 50.0% | |
| AGGAAGCTGGTCGCTCAATT+GGG | + | chr6_3:5214319-5214338 | None:intergenic | 50.0% | |
| TCAGATACTGTCACGGTCTC+TGG | + | chr6_3:5214519-5214538 | None:intergenic | 50.0% | |
| AGAGACCGTGACAGTATCTG+AGG | - | chr6_3:5214518-5214537 | Msa0934940:five_prime_UTR | 50.0% | |
| TCAGATACTGTCACGGTCTC+TGG | + | chr6_3:5214519-5214538 | None:intergenic | 50.0% | |
| AGAGACCGTGACAGTATCTG+AGG | - | chr6_3:5214518-5214537 | Msa0934940:five_prime_UTR | 50.0% | |
| CAAGATTCTGTCGCGATCTC+TGG | + | chr6_3:5214573-5214592 | None:intergenic | 50.0% | |
| CAGAGATCGCGACAGAATCT+TGG | - | chr6_3:5214571-5214590 | Msa0934940:five_prime_UTR | 50.0% | |
| TTCGTGTGACCAGCATTGCA+CGG | - | chr6_3:5214643-5214662 | Msa0934940:five_prime_UTR | 50.0% | |
| ! | GATGTCGGAGACAGCACTGA+AGG | - | chr6_3:5212419-5212438 | Msa0934940:CDS | 55.0% |
| GAAAGGAAGAGTGAGGGCTC+TGG | - | chr6_3:5212465-5212484 | Msa0934940:intron | 55.0% | |
| ! | GAAGAGTGAGGGCTCTGGTA+AGG | - | chr6_3:5212470-5212489 | Msa0934940:intron | 55.0% |
| !! | CCTAGGACTTTTCAGGGCCT+TGG | + | chr6_3:5213177-5213196 | None:intergenic | 55.0% |
| CCAAGGCCCTGAAAAGTCCT+AGG | - | chr6_3:5213174-5213193 | Msa0934940:intron | 55.0% | |
| ATGCCTTTGCACGAACACGG+GGG | + | chr6_3:5213536-5213555 | None:intergenic | 55.0% | |
| GATGCCTTTGCACGAACACG+GGG | + | chr6_3:5213537-5213556 | None:intergenic | 55.0% | |
| CAGGAAGCTGGTCGCTCAAT+TGG | + | chr6_3:5214320-5214339 | None:intergenic | 55.0% | |
| CTTCTCTGGACTCAGGAAGC+TGG | + | chr6_3:5214332-5214351 | None:intergenic | 55.0% | |
| TAGGGTTCGAGCTGCTTCTC+TGG | + | chr6_3:5214346-5214365 | None:intergenic | 55.0% | |
| AGCAGCTCGAACCCTACTTC+TGG | - | chr6_3:5214350-5214369 | Msa0934940:intron | 55.0% | |
| TCCTCAGATACAGTGGCTGC+TGG | + | chr6_3:5214414-5214433 | None:intergenic | 55.0% | |
| TCGTGTGACCAGCATTGCAC+GGG | - | chr6_3:5214644-5214663 | Msa0934940:five_prime_UTR | 55.0% | |
| CAGTGCTGTCTCCGACATCC+CGG | + | chr6_3:5212418-5212437 | None:intergenic | 60.0% | |
| !! | CACGGGGGTGCTTGTGCTTA+AGG | + | chr6_3:5213521-5213540 | None:intergenic | 60.0% |
| CGAGCTGCTTCTCTGGACTC+AGG | + | chr6_3:5214339-5214358 | None:intergenic | 60.0% | |
| GTGGCTGCTGGCACGAGATT+GGG | + | chr6_3:5214402-5214421 | None:intergenic | 60.0% | |
| AGTGGCTGCTGGCACGAGAT+TGG | + | chr6_3:5214403-5214422 | None:intergenic | 60.0% | |
| GCCAGCAGCCACTGTATCTG+AGG | - | chr6_3:5214410-5214429 | Msa0934940:intron | 60.0% | |
| TGTGACCAGCATTGCACGGG+AGG | - | chr6_3:5214647-5214666 | Msa0934940:five_prime_UTR | 60.0% | |
| GTGACCAGCATTGCACGGGA+GGG | - | chr6_3:5214648-5214667 | Msa0934940:five_prime_UTR | 60.0% | |
| AAGACCCTCCCGTGCAATGC+TGG | + | chr6_3:5214655-5214674 | None:intergenic | 60.0% | |
| GCACCCCCGTGTTCGTGCAA+AGG | - | chr6_3:5213530-5213549 | Msa0934940:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 5210687 | 5214683 | 5210687 | ID=Msa0934940;Name=Msa0934940 |
| chr6_3 | mRNA | 5210687 | 5214683 | 5210687 | ID=Msa0934940-mRNA-1;Parent=Msa0934940;Name=Msa0934940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=266|1|0.83|1|0.8|0.66|6|0|379 |
| chr6_3 | exon | 5210687 | 5211109 | 5210687 | ID=Msa0934940-mRNA-1:exon:1617;Parent=Msa0934940-mRNA-1 |
| chr6_3 | exon | 5211783 | 5211977 | 5211783 | ID=Msa0934940-mRNA-1:exon:1616;Parent=Msa0934940-mRNA-1 |
| chr6_3 | exon | 5212087 | 5212219 | 5212087 | ID=Msa0934940-mRNA-1:exon:1615;Parent=Msa0934940-mRNA-1 |
| chr6_3 | exon | 5212357 | 5212463 | 5212357 | ID=Msa0934940-mRNA-1:exon:1614;Parent=Msa0934940-mRNA-1 |
| chr6_3 | exon | 5212669 | 5212966 | 5212669 | ID=Msa0934940-mRNA-1:exon:1613;Parent=Msa0934940-mRNA-1 |
| chr6_3 | exon | 5214434 | 5214683 | 5214434 | ID=Msa0934940-mRNA-1:exon:1612;Parent=Msa0934940-mRNA-1 |
| chr6_3 | five_prime_UTR | 5214434 | 5214683 | 5214434 | ID=Msa0934940-mRNA-1:five_prime_utr;Parent=Msa0934940-mRNA-1 |
| chr6_3 | five_prime_UTR | 5212951 | 5212966 | 5212951 | ID=Msa0934940-mRNA-1:five_prime_utr;Parent=Msa0934940-mRNA-1 |
| chr6_3 | CDS | 5212669 | 5212950 | 5212669 | ID=Msa0934940-mRNA-1:cds;Parent=Msa0934940-mRNA-1 |
| chr6_3 | CDS | 5212357 | 5212463 | 5212357 | ID=Msa0934940-mRNA-1:cds;Parent=Msa0934940-mRNA-1 |
| chr6_3 | CDS | 5212087 | 5212219 | 5212087 | ID=Msa0934940-mRNA-1:cds;Parent=Msa0934940-mRNA-1 |
| chr6_3 | CDS | 5211783 | 5211977 | 5211783 | ID=Msa0934940-mRNA-1:cds;Parent=Msa0934940-mRNA-1 |
| chr6_3 | CDS | 5210687 | 5211109 | 5210687 | ID=Msa0934940-mRNA-1:cds;Parent=Msa0934940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
