Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487660 | XP_003598036.1 | 96.024 | 503 | 8 | 1 | 1 | 491 | 192 | 694 | 0.0 | 998 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487660 | sp|Q8VYR4|CSLG2_ARATH | 34.105 | 475 | 278 | 7 | 25 | 484 | 236 | 690 | 2.45e-95 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487660 | G7IYF6 | 96.024 | 503 | 8 | 1 | 1 | 491 | 192 | 694 | 0.0 | 998 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0392330 | Msa0487660 | 0.808249 | 3.398341e-50 | -8.615850e-47 |
| Msa0440280 | Msa0487660 | 0.831993 | 1.217708e-55 | -8.615850e-47 |
| Msa0346830 | Msa0487660 | 0.884810 | 1.394824e-71 | -8.615850e-47 |
| Msa0350690 | Msa0487660 | 0.832161 | 1.106848e-55 | -8.615850e-47 |
| Msa0487660 | Msa0594930 | 0.804063 | 2.585931e-49 | -8.615850e-47 |
| Msa0487660 | Msa0672600 | 0.841272 | 5.254100e-58 | -8.615850e-47 |
| Msa0487660 | Msa0693810 | 0.813373 | 2.644970e-51 | -8.615850e-47 |
| Msa0487660 | Msa0881320 | 0.806656 | 7.400098e-50 | -8.615850e-47 |
| Msa0487660 | Msa1019670 | 0.832665 | 8.304912e-56 | -8.615850e-47 |
| Msa0487660 | Msa1059440 | 0.864113 | 1.535280e-64 | -8.615850e-47 |
| Msa0487660 | Msa1104400 | 0.844620 | 6.755705e-59 | -8.615850e-47 |
| Msa0487660 | Msa1423320 | 0.834006 | 3.845995e-56 | -8.615850e-47 |
| Msa0487660 | Msa1445580 | 0.850621 | 1.508617e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487660 | MtrunA17_Chr3g0077511 | 96.024 | 503 | 8 | 1 | 1 | 491 | 192 | 694 | 0.0 | 998 |
| Msa0487660 | MtrunA17_Chr3g0095791 | 70.518 | 502 | 134 | 2 | 2 | 491 | 192 | 691 | 0.0 | 757 |
| Msa0487660 | MtrunA17_Chr2g0298581 | 69.920 | 502 | 137 | 2 | 2 | 491 | 193 | 692 | 0.0 | 744 |
| Msa0487660 | MtrunA17_Chr2g0307191 | 67.729 | 502 | 148 | 2 | 2 | 491 | 193 | 692 | 0.0 | 723 |
| Msa0487660 | MtrunA17_Chr1g0186381 | 38.012 | 513 | 284 | 8 | 2 | 489 | 208 | 711 | 1.11e-124 | 380 |
| Msa0487660 | MtrunA17_Chr4g0046401 | 38.943 | 511 | 284 | 6 | 2 | 489 | 207 | 712 | 5.78e-122 | 373 |
| Msa0487660 | MtrunA17_Chr3g0102531 | 33.047 | 466 | 281 | 6 | 39 | 489 | 257 | 706 | 3.21e-84 | 275 |
| Msa0487660 | MtrunA17_Chr3g0102541 | 31.770 | 469 | 286 | 6 | 39 | 489 | 258 | 710 | 4.83e-81 | 266 |
| Msa0487660 | MtrunA17_Chr3g0102551 | 30.621 | 467 | 284 | 9 | 39 | 487 | 268 | 712 | 2.67e-74 | 248 |
| Msa0487660 | MtrunA17_Chr8g0364641 | 31.358 | 523 | 294 | 12 | 25 | 490 | 426 | 940 | 3.99e-73 | 249 |
| Msa0487660 | MtrunA17_Chr4g0073711 | 28.545 | 536 | 303 | 13 | 25 | 490 | 472 | 997 | 3.93e-69 | 238 |
| Msa0487660 | MtrunA17_Chr3g0137951 | 29.699 | 532 | 286 | 16 | 38 | 490 | 523 | 1045 | 4.27e-65 | 228 |
| Msa0487660 | MtrunA17_Chr4g0025201 | 29.234 | 496 | 303 | 14 | 24 | 483 | 227 | 710 | 4.63e-64 | 221 |
| Msa0487660 | MtrunA17_Chr2g0284211 | 27.757 | 526 | 301 | 10 | 35 | 490 | 420 | 936 | 6.75e-64 | 223 |
| Msa0487660 | MtrunA17_Chr1g0183381 | 29.002 | 531 | 301 | 13 | 25 | 490 | 344 | 863 | 1.99e-63 | 221 |
| Msa0487660 | MtrunA17_Chr8g0379241 | 27.778 | 522 | 303 | 10 | 35 | 490 | 435 | 948 | 2.20e-63 | 222 |
| Msa0487660 | MtrunA17_Chr2g0322361 | 29.730 | 444 | 280 | 10 | 25 | 440 | 234 | 673 | 1.05e-59 | 209 |
| Msa0487660 | MtrunA17_Chr2g0322371 | 29.193 | 483 | 316 | 11 | 25 | 483 | 227 | 707 | 2.77e-59 | 207 |
| Msa0487660 | MtrunA17_Chr3g0078671 | 27.158 | 556 | 313 | 15 | 23 | 490 | 457 | 1008 | 8.29e-58 | 206 |
| Msa0487660 | MtrunA17_Chr2g0322351 | 28.958 | 480 | 306 | 11 | 30 | 483 | 234 | 704 | 3.10e-56 | 199 |
| Msa0487660 | MtrunA17_Chr5g0410641 | 25.758 | 528 | 307 | 12 | 38 | 490 | 566 | 1083 | 1.54e-52 | 191 |
| Msa0487660 | MtrunA17_Chr2g0297351 | 26.195 | 523 | 304 | 15 | 38 | 489 | 474 | 985 | 6.10e-52 | 189 |
| Msa0487660 | MtrunA17_Chr4g0039801 | 26.412 | 549 | 305 | 14 | 24 | 490 | 573 | 1104 | 1.91e-50 | 185 |
| Msa0487660 | MtrunA17_Chr1g0165411 | 26.604 | 530 | 307 | 14 | 30 | 490 | 549 | 1065 | 5.44e-48 | 178 |
| Msa0487660 | MtrunA17_Chr1g0165421 | 25.368 | 544 | 310 | 12 | 30 | 490 | 563 | 1093 | 6.76e-48 | 177 |
| Msa0487660 | MtrunA17_Chr2g0307231 | 73.529 | 102 | 27 | 0 | 117 | 218 | 1 | 102 | 7.35e-46 | 155 |
| Msa0487660 | MtrunA17_Chr8g0352231 | 26.888 | 331 | 218 | 7 | 176 | 490 | 715 | 1037 | 2.11e-37 | 146 |
| Msa0487660 | MtrunA17_Chr8g0352231 | 40.385 | 156 | 85 | 1 | 23 | 170 | 490 | 645 | 1.42e-34 | 138 |
| Msa0487660 | MtrunA17_Chr3g0088821 | 26.748 | 329 | 217 | 7 | 178 | 490 | 717 | 1037 | 9.14e-36 | 142 |
| Msa0487660 | MtrunA17_Chr3g0088821 | 45.600 | 125 | 68 | 0 | 38 | 162 | 513 | 637 | 1.05e-33 | 135 |
| Msa0487660 | MtrunA17_Chr8g0383701 | 28.571 | 343 | 218 | 10 | 165 | 489 | 721 | 1054 | 3.69e-35 | 140 |
| Msa0487660 | MtrunA17_Chr8g0383701 | 41.401 | 157 | 83 | 2 | 23 | 170 | 508 | 664 | 5.86e-34 | 136 |
| Msa0487660 | MtrunA17_Chr7g0267731 | 37.288 | 177 | 92 | 2 | 5 | 162 | 373 | 549 | 1.01e-34 | 138 |
| Msa0487660 | MtrunA17_Chr7g0267731 | 26.154 | 325 | 216 | 7 | 181 | 489 | 628 | 944 | 5.87e-34 | 136 |
| Msa0487660 | MtrunA17_Chr1g0201731 | 46.269 | 134 | 71 | 1 | 38 | 170 | 533 | 666 | 3.66e-34 | 137 |
| Msa0487660 | MtrunA17_Chr1g0201731 | 28.228 | 333 | 200 | 9 | 175 | 484 | 734 | 1050 | 1.21e-29 | 123 |
| Msa0487660 | MtrunA17_Chr2g0296991 | 43.750 | 128 | 72 | 0 | 35 | 162 | 461 | 588 | 1.24e-33 | 135 |
| Msa0487660 | MtrunA17_Chr2g0296991 | 27.273 | 330 | 213 | 10 | 178 | 490 | 684 | 1003 | 1.33e-31 | 129 |
| Msa0487660 | MtrunA17_Chr7g0274751 | 29.514 | 288 | 148 | 4 | 24 | 257 | 361 | 647 | 1.61e-33 | 134 |
| Msa0487660 | MtrunA17_Chr7g0269741 | 36.364 | 176 | 99 | 4 | 9 | 183 | 587 | 750 | 1.86e-27 | 116 |
| Msa0487660 | MtrunA17_Chr7g0269741 | 25.329 | 304 | 186 | 9 | 212 | 489 | 843 | 1131 | 1.04e-20 | 95.9 |
| Msa0487660 | MtrunA17_Chr2g0322341 | 44.545 | 110 | 57 | 1 | 25 | 130 | 234 | 343 | 2.99e-26 | 109 |
| Msa0487660 | MtrunA17_Chr2g0322331 | 26.875 | 320 | 212 | 10 | 181 | 483 | 34 | 348 | 8.73e-26 | 108 |
| Msa0487660 | MtrunA17_Chr2g0307221 | 50.794 | 63 | 31 | 0 | 273 | 335 | 1 | 63 | 2.11e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0487660 | AT4G24000.2 | 34.105 | 475 | 278 | 7 | 25 | 484 | 44 | 498 | 3.33e-98 | 306 |
| Msa0487660 | AT4G23990.2 | 34.232 | 482 | 275 | 8 | 25 | 484 | 44 | 505 | 2.09e-97 | 304 |
| Msa0487660 | AT4G24000.1 | 34.105 | 475 | 278 | 7 | 25 | 484 | 236 | 690 | 2.49e-96 | 306 |
| Msa0487660 | AT4G23990.1 | 34.232 | 482 | 275 | 8 | 25 | 484 | 258 | 719 | 4.05e-95 | 304 |
| Msa0487660 | AT4G24010.1 | 34.021 | 485 | 278 | 9 | 25 | 487 | 239 | 703 | 3.36e-94 | 302 |
| Msa0487660 | AT1G55850.1 | 32.766 | 470 | 266 | 8 | 39 | 489 | 266 | 704 | 1.37e-75 | 252 |
| Msa0487660 | AT5G17420.1 | 29.094 | 519 | 295 | 13 | 35 | 490 | 477 | 985 | 5.05e-73 | 249 |
| Msa0487660 | AT4G18780.1 | 28.544 | 529 | 296 | 10 | 35 | 490 | 423 | 942 | 7.05e-66 | 229 |
| Msa0487660 | AT2G25540.1 | 26.362 | 569 | 323 | 12 | 6 | 490 | 463 | 1019 | 4.61e-65 | 228 |
| Msa0487660 | AT2G21770.1 | 28.679 | 530 | 292 | 14 | 38 | 489 | 524 | 1045 | 8.41e-65 | 227 |
| Msa0487660 | AT5G64740.1 | 28.649 | 555 | 301 | 14 | 23 | 489 | 495 | 1042 | 9.11e-65 | 227 |
| Msa0487660 | AT2G32530.1 | 29.762 | 504 | 288 | 16 | 2 | 448 | 196 | 690 | 3.78e-56 | 200 |
| Msa0487660 | AT4G15290.1 | 28.976 | 459 | 278 | 12 | 33 | 453 | 245 | 693 | 2.61e-54 | 194 |
| Msa0487660 | AT2G32540.1 | 29.978 | 457 | 272 | 12 | 33 | 450 | 245 | 692 | 5.18e-54 | 194 |
| Msa0487660 | AT4G15320.5 | 29.783 | 460 | 274 | 12 | 33 | 453 | 245 | 694 | 7.33e-54 | 193 |
| Msa0487660 | AT4G15320.3 | 29.783 | 460 | 274 | 12 | 33 | 453 | 245 | 694 | 8.86e-54 | 193 |
| Msa0487660 | AT4G15320.4 | 29.783 | 460 | 274 | 12 | 33 | 453 | 260 | 709 | 9.66e-54 | 193 |
| Msa0487660 | AT5G16910.1 | 26.852 | 540 | 299 | 13 | 30 | 490 | 585 | 1107 | 1.30e-52 | 192 |
| Msa0487660 | AT2G32620.4 | 30.603 | 464 | 265 | 14 | 33 | 452 | 149 | 599 | 2.91e-52 | 187 |
| Msa0487660 | AT2G32620.1 | 30.416 | 457 | 264 | 13 | 33 | 448 | 245 | 688 | 1.38e-51 | 187 |
| Msa0487660 | AT2G32610.1 | 28.287 | 502 | 285 | 13 | 2 | 442 | 197 | 684 | 7.53e-51 | 185 |
| Msa0487660 | AT3G03050.1 | 26.287 | 544 | 300 | 13 | 30 | 490 | 582 | 1107 | 8.45e-51 | 187 |
| Msa0487660 | AT4G38190.1 | 26.326 | 528 | 303 | 14 | 30 | 490 | 560 | 1068 | 5.33e-50 | 184 |
| Msa0487660 | AT2G33100.2 | 24.764 | 529 | 311 | 12 | 38 | 489 | 481 | 999 | 7.95e-48 | 178 |
| Msa0487660 | AT2G33100.1 | 24.764 | 529 | 311 | 12 | 38 | 489 | 481 | 999 | 7.95e-48 | 178 |
| Msa0487660 | AT1G02730.1 | 24.640 | 556 | 313 | 13 | 24 | 489 | 604 | 1143 | 9.48e-48 | 177 |
| Msa0487660 | AT1G32180.1 | 23.473 | 524 | 324 | 11 | 38 | 490 | 427 | 944 | 1.43e-47 | 177 |
| Msa0487660 | AT1G32180.2 | 23.473 | 524 | 324 | 11 | 38 | 490 | 427 | 944 | 1.43e-47 | 177 |
| Msa0487660 | AT2G32620.3 | 34.891 | 321 | 177 | 9 | 33 | 333 | 245 | 553 | 8.30e-47 | 172 |
| Msa0487660 | AT2G32620.2 | 37.132 | 272 | 141 | 7 | 33 | 285 | 245 | 505 | 2.83e-46 | 169 |
| Msa0487660 | AT4G15320.2 | 27.389 | 471 | 264 | 12 | 33 | 439 | 245 | 701 | 2.24e-40 | 155 |
| Msa0487660 | AT4G15320.1 | 27.389 | 471 | 264 | 12 | 33 | 439 | 288 | 744 | 3.11e-40 | 155 |
| Msa0487660 | AT5G09870.1 | 44.586 | 157 | 78 | 2 | 23 | 170 | 483 | 639 | 3.41e-36 | 143 |
| Msa0487660 | AT5G09870.1 | 28.916 | 332 | 209 | 10 | 175 | 489 | 706 | 1027 | 3.39e-34 | 137 |
| Msa0487660 | AT5G05170.1 | 26.257 | 358 | 231 | 9 | 149 | 490 | 684 | 1024 | 3.10e-35 | 140 |
| Msa0487660 | AT5G05170.1 | 46.094 | 128 | 69 | 0 | 35 | 162 | 498 | 625 | 3.20e-34 | 137 |
| Msa0487660 | AT4G32410.1 | 27.576 | 330 | 215 | 8 | 177 | 490 | 718 | 1039 | 1.96e-34 | 138 |
| Msa0487660 | AT4G32410.1 | 43.796 | 137 | 77 | 0 | 38 | 174 | 517 | 653 | 4.50e-32 | 131 |
| Msa0487660 | AT4G39350.1 | 41.216 | 148 | 79 | 1 | 23 | 162 | 496 | 643 | 1.73e-33 | 135 |
| Msa0487660 | AT4G39350.1 | 27.246 | 334 | 212 | 8 | 175 | 489 | 720 | 1041 | 2.60e-32 | 132 |
| Msa0487660 | AT5G44030.3 | 43.200 | 125 | 71 | 0 | 38 | 162 | 178 | 302 | 2.57e-31 | 128 |
| Msa0487660 | AT5G44030.3 | 27.059 | 340 | 214 | 12 | 174 | 490 | 401 | 729 | 1.23e-28 | 120 |
| Msa0487660 | AT5G44030.2 | 43.200 | 125 | 71 | 0 | 38 | 162 | 486 | 610 | 3.71e-31 | 128 |
| Msa0487660 | AT5G44030.2 | 27.059 | 340 | 214 | 12 | 174 | 490 | 709 | 1037 | 1.57e-28 | 120 |
| Msa0487660 | AT5G44030.1 | 43.200 | 125 | 71 | 0 | 38 | 162 | 457 | 581 | 4.51e-31 | 128 |
| Msa0487660 | AT5G44030.1 | 27.059 | 340 | 214 | 12 | 174 | 490 | 680 | 1008 | 1.48e-28 | 120 |
Find 89 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTGGTTTCATACTTTA+TGG | 0.078344 | 3_4:-6727841 | Msa0487660:CDS |
| CTGAGAGGTCCGGGTCTTTC+TGG | 0.129924 | 3_4:-6729984 | Msa0487660:CDS |
| TTTGCTTCTTTGGTGGTTTA+TGG | 0.144769 | 3_4:-6726787 | Msa0487660:CDS |
| GCAATATATTTAGAGGTTTC+TGG | 0.151089 | 3_4:+6730229 | None:intergenic |
| AATAGAAGTGCATTATTATT+TGG | 0.173018 | 3_4:-6729945 | Msa0487660:CDS |
| TAAACAACACGTGGAATTTC+TGG | 0.175283 | 3_4:+6730525 | None:intergenic |
| GTGAACACTATTTGCTTCTT+TGG | 0.183474 | 3_4:-6726797 | Msa0487660:CDS |
| CTTGAAAATCCATAAGTAAA+AGG | 0.205743 | 3_4:+6727919 | None:intergenic |
| CATTTGATAGAGGTCATTTC+TGG | 0.217342 | 3_4:-6727058 | Msa0487660:CDS |
| TATGAAACCAATGGCATATA+TGG | 0.233103 | 3_4:+6727849 | None:intergenic |
| AACAAATGCAATATATTTAG+AGG | 0.277003 | 3_4:+6730222 | None:intergenic |
| GGTGGGATGAACAAAGAATT+TGG | 0.291492 | 3_4:-6727015 | Msa0487660:CDS |
| ACAGGTCAAGTACGAGAAAA+TGG | 0.301944 | 3_4:-6731055 | None:intergenic |
| TAGACTCCCCAAAGTAGTTT+TGG | 0.305921 | 3_4:+6728782 | None:intergenic |
| AAAGAAACACATGGCTTGTT+TGG | 0.307493 | 3_4:+6730258 | None:intergenic |
| TTGATGCCCAAAACTACTTT+GGG | 0.310084 | 3_4:-6728789 | Msa0487660:CDS |
| TTTGGAAGTCCAATTCAAAA+AGG | 0.311049 | 3_4:-6729927 | Msa0487660:intron |
| CTTGATGCCCAAAACTACTT+TGG | 0.340496 | 3_4:-6728790 | Msa0487660:CDS |
| CAAAGAAGGCATGCTTCAAT+TGG | 0.430014 | 3_4:-6727989 | Msa0487660:CDS |
| GATGGATGGTCTGAGAGGTC+CGG | 0.430106 | 3_4:-6729994 | Msa0487660:CDS |
| ATAGAGGTCATTTCTGGTGA+TGG | 0.431524 | 3_4:-6727052 | Msa0487660:CDS |
| TGGTTGTAGCTAAGAGTCTC+AGG | 0.432047 | 3_4:-6730349 | Msa0487660:intron |
| TTTCCTGGTTAGCTATGTAA+TGG | 0.435646 | 3_4:-6726720 | Msa0487660:CDS |
| GAGGCAGTTAAGAAATGGTT+AGG | 0.443261 | 3_4:-6726956 | Msa0487660:CDS |
| AACACTATTTGCTTCTTTGG+TGG | 0.448242 | 3_4:-6726794 | Msa0487660:CDS |
| CTACGAATCAAACACACAAT+GGG | 0.452008 | 3_4:-6728653 | Msa0487660:CDS |
| CTAAGGTTGTGAAACATTTG+AGG | 0.452359 | 3_4:+6730193 | None:intergenic |
| TTGAAAATCCATAAGTAAAA+GGG | 0.454918 | 3_4:+6727920 | None:intergenic |
| TGACAGAGGCAGTTAAGAAA+TGG | 0.472408 | 3_4:-6726961 | Msa0487660:CDS |
| ATTTCATCCATATATGCCAT+TGG | 0.484922 | 3_4:-6727856 | Msa0487660:CDS |
| ATGGATGGTCTGAGAGGTCC+GGG | 0.486554 | 3_4:-6729993 | Msa0487660:CDS |
| ATGGCTTGTTTGGCTGAAGA+TGG | 0.488092 | 3_4:+6730268 | None:intergenic |
| TCACAGATAGGATTCTCATA+TGG | 0.490844 | 3_4:-6728123 | Msa0487660:intron |
| CAGTCCACTGCAAGTACATA+AGG | 0.491845 | 3_4:+6730310 | None:intergenic |
| ACATTTATGATAATCAATCT+AGG | 0.492978 | 3_4:-6730162 | Msa0487660:CDS |
| TTTATGTGTCTCGTGAAAGA+AGG | 0.493243 | 3_4:-6730506 | Msa0487660:CDS |
| TAAGGTTGTGAAACATTTGA+GGG | 0.508349 | 3_4:+6730194 | None:intergenic |
| ATGCCTTCTTTGATATCAGT+TGG | 0.510191 | 3_4:+6728000 | None:intergenic |
| TGTTACAGGTCACAGACCCT+TGG | 0.513094 | 3_4:-6727123 | Msa0487660:intron |
| GATGGTTTGTTGTCCTCGGA+TGG | 0.514250 | 3_4:+6728735 | None:intergenic |
| ACAAATTCAACATTTGATAG+AGG | 0.517780 | 3_4:-6727068 | Msa0487660:CDS |
| TGGTGACTGATAGACCTTCT+CGG | 0.518496 | 3_4:-6730987 | Msa0487660:CDS |
| CCATTGTGTGTTTGATTCGT+AGG | 0.531038 | 3_4:+6728654 | None:intergenic |
| TATTTCAGACAATGTGGCAA+GGG | 0.537874 | 3_4:-6730016 | Msa0487660:intron |
| ACTATGAGTAACACAACCAT+TGG | 0.541281 | 3_4:+6726818 | None:intergenic |
| TTGAATTTGTGAGGAAGTGA+TGG | 0.541973 | 3_4:+6730483 | None:intergenic |
| AAGTACACACCAATGTATTG+AGG | 0.543839 | 3_4:+6730451 | None:intergenic |
| AGTACACACCAATGTATTGA+GGG | 0.544381 | 3_4:+6730452 | None:intergenic |
| TAACTATGAAAAGTAAGAGT+GGG | 0.548538 | 3_4:-6726667 | Msa0487660:CDS |
| GTCTCAGGTTTAATCAGCAA+TGG | 0.549566 | 3_4:-6730334 | Msa0487660:CDS |
| GGTCCGGGTCTTTCTGGCAG+TGG | 0.551528 | 3_4:-6729978 | Msa0487660:CDS |
| ACAATGTGGCAAGGGATGGA+TGG | 0.559193 | 3_4:-6730008 | Msa0487660:CDS |
| CTTGAGTGATTCTATGTATG+TGG | 0.560568 | 3_4:+6728759 | None:intergenic |
| ATGGCTCAGTGTCAATGTGG+TGG | 0.563672 | 3_4:-6727033 | Msa0487660:CDS |
| TCAGACAATGTGGCAAGGGA+TGG | 0.566411 | 3_4:-6730012 | Msa0487660:intron |
| CCTACGAATCAAACACACAA+TGG | 0.567795 | 3_4:-6728654 | Msa0487660:CDS |
| TCAAGAAATATGAACAAGGT+AGG | 0.568930 | 3_4:-6726874 | Msa0487660:CDS |
| TGGCTCAGTGTCAATGTGGT+GGG | 0.570848 | 3_4:-6727032 | Msa0487660:CDS |
| ATAACTATGAAAAGTAAGAG+TGG | 0.571693 | 3_4:-6726668 | Msa0487660:CDS |
| TGATGCCCAAAACTACTTTG+GGG | 0.574100 | 3_4:-6728788 | Msa0487660:CDS |
| GAGCCATTACATAGCTAACC+AGG | 0.577568 | 3_4:+6726717 | None:intergenic |
| GCCATAAAGTATGAAACCAA+TGG | 0.578107 | 3_4:+6727840 | None:intergenic |
| GCAATTTATTTCAGACAATG+TGG | 0.586560 | 3_4:-6730022 | Msa0487660:intron |
| GGATTTACCTCGATCCGAGA+AGG | 0.587807 | 3_4:+6730973 | None:intergenic |
| AGCTTTGTACATGTCTCCAA+TGG | 0.591743 | 3_4:-6726834 | Msa0487660:CDS |
| GCATGCTTCAATTGGTGAAG+TGG | 0.593888 | 3_4:-6727981 | Msa0487660:CDS |
| TCACTTCCTCACAAATTCAA+AGG | 0.597910 | 3_4:-6730480 | Msa0487660:CDS |
| GCACCTCCTTTGAATTTGTG+AGG | 0.599322 | 3_4:+6730474 | None:intergenic |
| GCACCAACTGATATCAAAGA+AGG | 0.601020 | 3_4:-6728003 | Msa0487660:CDS |
| TTATTTCAGACAATGTGGCA+AGG | 0.603544 | 3_4:-6730017 | Msa0487660:intron |
| TATCAAATGTTGAATTTGTG+TGG | 0.607267 | 3_4:+6727072 | None:intergenic |
| TTACTAGAGAGTACTATCAC+TGG | 0.610277 | 3_4:-6728096 | Msa0487660:CDS |
| CGAGACACATAAACAACACG+TGG | 0.616062 | 3_4:+6730516 | None:intergenic |
| AGGAGGTGCCCTCAATACAT+TGG | 0.621577 | 3_4:-6730460 | Msa0487660:intron |
| TTACCACTGCCAGAAAGACC+CGG | 0.628297 | 3_4:+6729975 | None:intergenic |
| AATGCAAACACTGCAAACCA+AGG | 0.637039 | 3_4:+6727106 | None:intergenic |
| CACATACATAGAATCACTCA+AGG | 0.639480 | 3_4:-6728758 | Msa0487660:CDS |
| ATGCAAACACTGCAAACCAA+GGG | 0.640787 | 3_4:+6727107 | None:intergenic |
| TGGACCTTATGTACTTGCAG+TGG | 0.647035 | 3_4:-6730314 | Msa0487660:CDS |
| CAAGGGATGGATGGTCTGAG+AGG | 0.648731 | 3_4:-6729999 | Msa0487660:CDS |
| TGATAGACCTTCTCGGATCG+AGG | 0.649181 | 3_4:-6730980 | Msa0487660:intron |
| GAATCACTCAAGGCCATCCG+AGG | 0.649360 | 3_4:-6728748 | Msa0487660:CDS |
| TAGTTTGTTTGCAATGACAG+AGG | 0.658463 | 3_4:-6726975 | Msa0487660:CDS |
| CTTCCTCACAAATTCAAAGG+AGG | 0.671490 | 3_4:-6730477 | Msa0487660:CDS |
| TGGATCAAGAAAGAAACACA+TGG | 0.680933 | 3_4:+6730249 | None:intergenic |
| GTGATGGCTCAGTGTCAATG+TGG | 0.686344 | 3_4:-6727036 | Msa0487660:CDS |
| GGTGCACACCCTAAGAAACA+TGG | 0.694506 | 3_4:+6728021 | None:intergenic |
| AAAATCAAGAAATATGAACA+AGG | 0.697470 | 3_4:-6726878 | Msa0487660:CDS |
| TACGAATCAAACACACAATG+GGG | 0.714112 | 3_4:-6728652 | Msa0487660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTAGATTATAAATG+AGG | - | chr3_4:6727165-6727184 | Msa0487660:intron | 10.0% |
| !!! | AATCAACAAAATTTTAATTA+AGG | - | chr3_4:6727591-6727610 | Msa0487660:intron | 10.0% |
| !! | ATAAGAATAAAAATAAATGA+AGG | - | chr3_4:6728316-6728335 | Msa0487660:intron | 10.0% |
| !! | TTATTGTTTCATATATAAAT+AGG | - | chr3_4:6730396-6730415 | Msa0487660:intron | 10.0% |
| !! | TATTGTTTCATATATAAATA+GGG | - | chr3_4:6730397-6730416 | Msa0487660:intron | 10.0% |
| !! | AAAAATTTACTTACTATATT+AGG | + | chr3_4:6730534-6730553 | None:intergenic | 10.0% |
| !! | TACAATTTACAATTTACATT+CGG | + | chr3_4:6727022-6727041 | None:intergenic | 15.0% |
| !! | ATGATTGCAAAATAATAATT+AGG | + | chr3_4:6727823-6727842 | None:intergenic | 15.0% |
| !!! | ATTTTACAAGTTTATTTTGT+AGG | - | chr3_4:6728232-6728251 | Msa0487660:intron | 15.0% |
| !!! | TGTGTAATCTTTTAAAATTT+TGG | + | chr3_4:6729253-6729272 | None:intergenic | 15.0% |
| !! | TGAAAAAATATCAATCAATT+CGG | + | chr3_4:6729330-6729349 | None:intergenic | 15.0% |
| !!! | TTTAACATGTTTTAATTTAC+TGG | - | chr3_4:6730569-6730588 | Msa0487660:intron | 15.0% |
| !! | GAGAAAAATATTGAGAAATT+CGG | - | chr3_4:6726682-6726701 | Msa0487660:CDS | 20.0% |
| !!! | ATTATTCAATGTAATTTGTG+AGG | + | chr3_4:6726809-6726828 | None:intergenic | 20.0% |
| !! | ATTAACCAACTTATTACAAA+TGG | + | chr3_4:6726901-6726920 | None:intergenic | 20.0% |
| !!! | GATTGACTATTTTTTAAATG+TGG | - | chr3_4:6726942-6726961 | Msa0487660:CDS | 20.0% |
| !!! | GTTTATTTGTTAATTAGTTG+AGG | + | chr3_4:6727081-6727100 | None:intergenic | 20.0% |
| !!! | TTTCACACATTTTTTTATTG+TGG | - | chr3_4:6727346-6727365 | Msa0487660:intron | 20.0% |
| !! | AACAAATGCAATATATTTAG+AGG | + | chr3_4:6727496-6727515 | None:intergenic | 20.0% |
| !! | ACATTTATGATAATCAATCT+AGG | - | chr3_4:6727553-6727572 | Msa0487660:intron | 20.0% |
| !!! | TTTGATGATCATATAAATGA+TGG | - | chr3_4:6727664-6727683 | Msa0487660:intron | 20.0% |
| !!! | AATAGAAGTGCATTATTATT+TGG | - | chr3_4:6727770-6727789 | Msa0487660:intron | 20.0% |
| !!! | AAATATGTACCTTTTTGAAT+TGG | + | chr3_4:6727800-6727819 | None:intergenic | 20.0% |
| !!! | ACAACTAAAAACCTAATTTT+AGG | + | chr3_4:6728418-6728437 | None:intergenic | 20.0% |
| !! | AAATTGTCTTCACTTATAAA+CGG | - | chr3_4:6728742-6728761 | Msa0487660:CDS | 20.0% |
| !!! | AAAGAAAAGTACTCTTATAT+TGG | + | chr3_4:6728882-6728901 | None:intergenic | 20.0% |
| !!! | TTTTGAAAGATTCTTTTTGA+TGG | + | chr3_4:6729001-6729020 | None:intergenic | 20.0% |
| !! | TGATACATTTATCAAAATCT+AGG | - | chr3_4:6729103-6729122 | Msa0487660:intron | 20.0% |
| !! | GATACATTTATCAAAATCTA+GGG | - | chr3_4:6729104-6729123 | Msa0487660:intron | 20.0% |
| !! | GACTAAAATATCTATTTACT+TGG | + | chr3_4:6729135-6729154 | None:intergenic | 20.0% |
| !!! | ATTTTGTACAACAATTTTAG+AGG | + | chr3_4:6729295-6729314 | None:intergenic | 20.0% |
| !! | TATTACTATTTCGTAAATTG+AGG | - | chr3_4:6729363-6729382 | Msa0487660:intron | 20.0% |
| !!! | ACTATATGTGGTATATTTTT+GGG | + | chr3_4:6729491-6729510 | None:intergenic | 20.0% |
| !!! | TACTATATGTGGTATATTTT+TGG | + | chr3_4:6729492-6729511 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTATTCACAGAT+AGG | - | chr3_4:6729580-6729599 | Msa0487660:intron | 20.0% |
| !! | TTGAAAATCCATAAGTAAAA+GGG | + | chr3_4:6729798-6729817 | None:intergenic | 20.0% |
| !!! | TTGAATATATGTTTTACCTT+TGG | + | chr3_4:6729943-6729962 | None:intergenic | 20.0% |
| !!! | TATATTTAAAATTGCGATTG+TGG | - | chr3_4:6729974-6729993 | Msa0487660:CDS | 20.0% |
| !!! | AAATTCATGGTTTTAAATTG+CGG | + | chr3_4:6730123-6730142 | None:intergenic | 20.0% |
| !!! | ACCATGAATTTTATTATGAT+TGG | - | chr3_4:6730132-6730151 | Msa0487660:intron | 20.0% |
| !! | TCCAATCATAATAAAATTCA+TGG | + | chr3_4:6730136-6730155 | None:intergenic | 20.0% |
| !! | ACATGTTAAATTATAAAACC+AGG | + | chr3_4:6730559-6730578 | None:intergenic | 20.0% |
| !! | AAAATCAAGAAATATGAACA+AGG | - | chr3_4:6730837-6730856 | Msa0487660:intron | 20.0% |
| ! | GTTAACCATTTGTAATAAGT+TGG | - | chr3_4:6726893-6726912 | Msa0487660:CDS | 25.0% |
| ! | AGTAAATTGTAAACTGTAAG+TGG | - | chr3_4:6726969-6726988 | Msa0487660:CDS | 25.0% |
| !!! | CATAAATGTCTTTTTTGCTA+AGG | + | chr3_4:6727542-6727561 | None:intergenic | 25.0% |
| ! | TTACATGACAAGTAATAATG+TGG | + | chr3_4:6727911-6727930 | None:intergenic | 25.0% |
| !!! | CAAGTTTATTTTGTAGGTTT+TGG | - | chr3_4:6728238-6728257 | Msa0487660:intron | 25.0% |
| ! | GTACTATTCCTCTTAAAATT+TGG | + | chr3_4:6728270-6728289 | None:intergenic | 25.0% |
| !! | CTTAATCACAAATTCTAAGA+TGG | + | chr3_4:6728686-6728705 | None:intergenic | 25.0% |
| !! | GATCATATTTTGTCTAATGT+AGG | - | chr3_4:6728764-6728783 | Msa0487660:CDS | 25.0% |
| ! | AAATCAACCACATACAAATT+TGG | - | chr3_4:6728798-6728817 | Msa0487660:CDS | 25.0% |
| ! | AAATAGTCCAAATTTGTATG+TGG | + | chr3_4:6728808-6728827 | None:intergenic | 25.0% |
| ! | CAAAAAGAATCTTTCAAAAG+AGG | - | chr3_4:6729002-6729021 | Msa0487660:intron | 25.0% |
| !! | TGTCGATCTTTACAATTTTA+AGG | + | chr3_4:6729157-6729176 | None:intergenic | 25.0% |
| !!! | AATTTTGGTGCAAAAATTTG+AGG | + | chr3_4:6729238-6729257 | None:intergenic | 25.0% |
| ! | AGATTACACATAACATAACA+AGG | - | chr3_4:6729263-6729282 | Msa0487660:intron | 25.0% |
| ! | GATTACACATAACATAACAA+GGG | - | chr3_4:6729264-6729283 | Msa0487660:intron | 25.0% |
| !! | CGTGTTTTATAGATAGTAAT+AGG | + | chr3_4:6729430-6729449 | None:intergenic | 25.0% |
| ! | CTTGAAAATCCATAAGTAAA+AGG | + | chr3_4:6729799-6729818 | None:intergenic | 25.0% |
| ! | CTTTACATTGTGATAAAATG+CGG | - | chr3_4:6730010-6730029 | Msa0487660:CDS | 25.0% |
| ! | TAGTTAAAGACAAATTGTTC+AGG | + | chr3_4:6730319-6730338 | None:intergenic | 25.0% |
| !! | TAGTAAGTAAATTTTTGTCC+TGG | - | chr3_4:6730538-6730557 | Msa0487660:CDS | 25.0% |
| !!! | TTTTAATTTACTGGTGTTAC+AGG | - | chr3_4:6730578-6730597 | Msa0487660:intron | 25.0% |
| ! | TATCAAATGTTGAATTTGTG+TGG | + | chr3_4:6730646-6730665 | None:intergenic | 25.0% |
| ! | ACAAATTCAACATTTGATAG+AGG | - | chr3_4:6730647-6730666 | Msa0487660:intron | 25.0% |
| ! | ATAACTATGAAAAGTAAGAG+TGG | - | chr3_4:6731047-6731066 | Msa0487660:CDS | 25.0% |
| ! | TAACTATGAAAAGTAAGAGT+GGG | - | chr3_4:6731048-6731067 | Msa0487660:CDS | 25.0% |
| GCAATATATTTAGAGGTTTC+TGG | + | chr3_4:6727489-6727508 | None:intergenic | 30.0% | |
| TAAGGTTGTGAAACATTTGA+GGG | + | chr3_4:6727524-6727543 | None:intergenic | 30.0% | |
| GCAATTTATTTCAGACAATG+TGG | - | chr3_4:6727693-6727712 | Msa0487660:intron | 30.0% | |
| TTTGGAAGTCCAATTCAAAA+AGG | - | chr3_4:6727788-6727807 | Msa0487660:intron | 30.0% | |
| GATTGCAAAAAATGAATGTG+TGG | + | chr3_4:6727869-6727888 | None:intergenic | 30.0% | |
| TACAAAAAGTTTAGACGTGT+TGG | + | chr3_4:6728130-6728149 | None:intergenic | 30.0% | |
| AAGAGGAATAGTACATAACT+AGG | - | chr3_4:6728276-6728295 | Msa0487660:intron | 30.0% | |
| ATTATCTACTAGCAGCTTAA+AGG | + | chr3_4:6728381-6728400 | None:intergenic | 30.0% | |
| ! | GCTAGTAGATAATTTTTGCT+AGG | - | chr3_4:6728388-6728407 | Msa0487660:intron | 30.0% |
| GTAAAATCTCTTAGAACTTG+TGG | - | chr3_4:6728459-6728478 | Msa0487660:intron | 30.0% | |
| !! | CAGTTTTGTGTAGTTATGTT+AGG | + | chr3_4:6728709-6728728 | None:intergenic | 30.0% |
| AAATGCTAACTTCAATGTTG+TGG | + | chr3_4:6728851-6728870 | None:intergenic | 30.0% | |
| TACTATTTCGTAAATTGAGG+AGG | - | chr3_4:6729366-6729385 | Msa0487660:intron | 30.0% | |
| !! | GGCATTTTAGTCATTGAATT+TGG | + | chr3_4:6729409-6729428 | None:intergenic | 30.0% |
| GATCAACTGAATACTATATG+TGG | + | chr3_4:6729503-6729522 | None:intergenic | 30.0% | |
| ! | CTAAGAAACATGGTGTTTTT+GGG | + | chr3_4:6729687-6729706 | None:intergenic | 30.0% |
| CAAAAACACCATGTTTCTTA+GGG | - | chr3_4:6729686-6729705 | Msa0487660:intron | 30.0% | |
| ! | AAATACAGCCCTTTTACTTA+TGG | - | chr3_4:6729787-6729806 | Msa0487660:intron | 30.0% |
| ATTTCATCCATATATGCCAT+TGG | - | chr3_4:6729859-6729878 | Msa0487660:intron | 30.0% | |
| TATGAAACCAATGGCATATA+TGG | + | chr3_4:6729869-6729888 | None:intergenic | 30.0% | |
| ! | CGCATTTTATCACAATGTAA+AGG | + | chr3_4:6730012-6730031 | None:intergenic | 30.0% |
| !!! | CATATTTTTTCAAACCAAGC+AGG | + | chr3_4:6730159-6730178 | None:intergenic | 30.0% |
| ! | GCTTGGTTTGAAAAAATATG+TGG | - | chr3_4:6730159-6730178 | Msa0487660:CDS | 30.0% |
| CAAAATTGTCTATGCTACAA+TGG | - | chr3_4:6730211-6730230 | Msa0487660:CDS | 30.0% | |
| ATGTAAAAACCAAGTGATTG+AGG | + | chr3_4:6730361-6730380 | None:intergenic | 30.0% | |
| !! | CACTTGGTTTTTACATGAAA+CGG | - | chr3_4:6730365-6730384 | Msa0487660:intron | 30.0% |
| TCAAGAAATATGAACAAGGT+AGG | - | chr3_4:6730841-6730860 | Msa0487660:intron | 30.0% | |
| !! | AGAGATTTTGAAGACATGTT+TGG | - | chr3_4:6730966-6730985 | Msa0487660:intron | 30.0% |
| ! | TCTTAGCTATCCAATTTTTG+AGG | - | chr3_4:6731019-6731038 | Msa0487660:CDS | 30.0% |
| ! | CTTAGCTATCCAATTTTTGA+GGG | - | chr3_4:6731020-6731039 | Msa0487660:CDS | 30.0% |
| !! | TTAGCTATCCAATTTTTGAG+GGG | - | chr3_4:6731021-6731040 | Msa0487660:CDS | 30.0% |
| GTTATAATCCCCTCAAAAAT+TGG | + | chr3_4:6731032-6731051 | None:intergenic | 30.0% | |
| ! | TCACCATACGAAGATTTTTG+GGG | + | chr3_4:6726714-6726733 | None:intergenic | 35.0% |
| ! | GTCACCATACGAAGATTTTT+GGG | + | chr3_4:6726715-6726734 | None:intergenic | 35.0% |
| ! | AGTCACCATACGAAGATTTT+TGG | + | chr3_4:6726716-6726735 | None:intergenic | 35.0% |
| GATCGAGGTAAATCCAATAA+AGG | - | chr3_4:6726750-6726769 | Msa0487660:CDS | 35.0% | |
| AATCCAATAAAGGATCGCAA+TGG | - | chr3_4:6726760-6726779 | Msa0487660:CDS | 35.0% | |
| AATCCATTGCGATCCTTTAT+TGG | + | chr3_4:6726766-6726785 | None:intergenic | 35.0% | |
| TAAACAACACGTGGAATTTC+TGG | + | chr3_4:6727193-6727212 | None:intergenic | 35.0% | |
| TTTATGTGTCTCGTGAAAGA+AGG | - | chr3_4:6727209-6727228 | Msa0487660:intron | 35.0% | |
| TTGAATTTGTGAGGAAGTGA+TGG | + | chr3_4:6727235-6727254 | None:intergenic | 35.0% | |
| TCACTTCCTCACAAATTCAA+AGG | - | chr3_4:6727235-6727254 | Msa0487660:intron | 35.0% | |
| AGTACACACCAATGTATTGA+GGG | + | chr3_4:6727266-6727285 | None:intergenic | 35.0% | |
| AAGTACACACCAATGTATTG+AGG | + | chr3_4:6727267-6727286 | None:intergenic | 35.0% | |
| !! | AAAGAAACACATGGCTTGTT+TGG | + | chr3_4:6727460-6727479 | None:intergenic | 35.0% |
| TGGATCAAGAAAGAAACACA+TGG | + | chr3_4:6727469-6727488 | None:intergenic | 35.0% | |
| CTAAGGTTGTGAAACATTTG+AGG | + | chr3_4:6727525-6727544 | None:intergenic | 35.0% | |
| !! | TCAATCTAGGACTGCTTTTA+AGG | - | chr3_4:6727566-6727585 | Msa0487660:intron | 35.0% |
| TTATTTCAGACAATGTGGCA+AGG | - | chr3_4:6727698-6727717 | Msa0487660:intron | 35.0% | |
| TATTTCAGACAATGTGGCAA+GGG | - | chr3_4:6727699-6727718 | Msa0487660:intron | 35.0% | |
| !! | CATGTTTCAAAGAGTATCGA+CGG | + | chr3_4:6728074-6728093 | None:intergenic | 35.0% |
| ! | CTTAATCTTGATGACCCATT+AGG | - | chr3_4:6728102-6728121 | Msa0487660:CDS | 35.0% |
| TAAGAGTCGTTGAATGATGT+AGG | - | chr3_4:6728174-6728193 | Msa0487660:intron | 35.0% | |
| ! | GGTCACAACCAAATTTTAAG+AGG | - | chr3_4:6728259-6728278 | Msa0487660:intron | 35.0% |
| TGCTAGGTGTACCTAAAATT+AGG | - | chr3_4:6728404-6728423 | Msa0487660:intron | 35.0% | |
| AATCTCTTAGAACTTGTGGT+TGG | - | chr3_4:6728463-6728482 | Msa0487660:intron | 35.0% | |
| !! | CAGTTTTATGAGGTTATGCT+AGG | + | chr3_4:6728499-6728518 | None:intergenic | 35.0% |
| TCAATAGTTCTTGTCATGAG+GGG | + | chr3_4:6728590-6728609 | None:intergenic | 35.0% | |
| CTCAATAGTTCTTGTCATGA+GGG | + | chr3_4:6728591-6728610 | None:intergenic | 35.0% | |
| ATGACAAGAACTATTGAGCT+TGG | - | chr3_4:6728593-6728612 | Msa0487660:intron | 35.0% | |
| AGCTTCTGTTAAGATCTGTT+GGG | + | chr3_4:6728657-6728676 | None:intergenic | 35.0% | |
| TTGATGCCCAAAACTACTTT+GGG | - | chr3_4:6728926-6728945 | Msa0487660:intron | 35.0% | |
| CTTGAGTGATTCTATGTATG+TGG | + | chr3_4:6728959-6728978 | None:intergenic | 35.0% | |
| CACATACATAGAATCACTCA+AGG | - | chr3_4:6728957-6728976 | Msa0487660:intron | 35.0% | |
| !!! | TTTTGATGGTTTGTTGTCCT+CGG | + | chr3_4:6728987-6729006 | None:intergenic | 35.0% |
| CTACGAATCAAACACACAAT+GGG | - | chr3_4:6729062-6729081 | Msa0487660:intron | 35.0% | |
| TACGAATCAAACACACAATG+GGG | - | chr3_4:6729063-6729082 | Msa0487660:intron | 35.0% | |
| TCACAGATAGGATTCTCATA+TGG | - | chr3_4:6729592-6729611 | Msa0487660:intron | 35.0% | |
| !! | TTACTAGAGAGTACTATCAC+TGG | - | chr3_4:6729619-6729638 | Msa0487660:intron | 35.0% |
| !!! | AACATGGTGTTTTTGGGTAA+AGG | + | chr3_4:6729681-6729700 | None:intergenic | 35.0% |
| ! | CCTAAGAAACATGGTGTTTT+TGG | + | chr3_4:6729688-6729707 | None:intergenic | 35.0% |
| CCAAAAACACCATGTTTCTT+AGG | - | chr3_4:6729685-6729704 | Msa0487660:intron | 35.0% | |
| ATGCCTTCTTTGATATCAGT+TGG | + | chr3_4:6729718-6729737 | None:intergenic | 35.0% | |
| !! | GCCATTGGTTTCATACTTTA+TGG | - | chr3_4:6729874-6729893 | Msa0487660:intron | 35.0% |
| GCCATAAAGTATGAAACCAA+TGG | + | chr3_4:6729878-6729897 | None:intergenic | 35.0% | |
| !! | TGTTTTACCTTTGGAAACAC+AGG | + | chr3_4:6729934-6729953 | None:intergenic | 35.0% |
| CAATTGCAGCTACAATATTG+CGG | + | chr3_4:6730084-6730103 | None:intergenic | 35.0% | |
| TTATTATGATTGGACCTGCT+TGG | - | chr3_4:6730142-6730161 | Msa0487660:intron | 35.0% | |
| ACAATGGACCATTGGTAAAT+TGG | - | chr3_4:6730227-6730246 | Msa0487660:CDS | 35.0% | |
| CATTTGATAGAGGTCATTTC+TGG | - | chr3_4:6730657-6730676 | Msa0487660:intron | 35.0% | |
| !! | TAGTTTGTTTGCAATGACAG+AGG | - | chr3_4:6730740-6730759 | Msa0487660:intron | 35.0% |
| !! | CAAGGTAGGTTTGATTTTCA+AGG | - | chr3_4:6730855-6730874 | Msa0487660:intron | 35.0% |
| ACTATGAGTAACACAACCAT+TGG | + | chr3_4:6730900-6730919 | None:intergenic | 35.0% | |
| GTGAACACTATTTGCTTCTT+TGG | - | chr3_4:6730918-6730937 | Msa0487660:intron | 35.0% | |
| AACACTATTTGCTTCTTTGG+TGG | - | chr3_4:6730921-6730940 | Msa0487660:intron | 35.0% | |
| ! | TTTGCTTCTTTGGTGGTTTA+TGG | - | chr3_4:6730928-6730947 | Msa0487660:intron | 35.0% |
| ! | TTTCCTGGTTAGCTATGTAA+TGG | - | chr3_4:6730995-6731014 | Msa0487660:CDS | 35.0% |
| !!! | CATACGAAGATTTTTGGGGT+CGG | + | chr3_4:6726710-6726729 | None:intergenic | 40.0% |
| CTTCCTCACAAATTCAAAGG+AGG | - | chr3_4:6727238-6727257 | Msa0487660:intron | 40.0% | |
| GTCTCAGGTTTAATCAGCAA+TGG | - | chr3_4:6727381-6727400 | Msa0487660:intron | 40.0% | |
| TAGACGTGTTGGATCCTAAT+GGG | + | chr3_4:6728119-6728138 | None:intergenic | 40.0% | |
| TTAGACGTGTTGGATCCTAA+TGG | + | chr3_4:6728120-6728139 | None:intergenic | 40.0% | |
| CAACGACTCTTAATAGCTTC+AGG | + | chr3_4:6728166-6728185 | None:intergenic | 40.0% | |
| !! | TGACAGAGACTTGCTGATTA+AGG | - | chr3_4:6728351-6728370 | Msa0487660:intron | 40.0% |
| !! | CCTCACAAGTCAGTTTTATG+AGG | + | chr3_4:6728509-6728528 | None:intergenic | 40.0% |
| !! | CCTCATAAAACTGACTTGTG+AGG | - | chr3_4:6728506-6728525 | Msa0487660:intron | 40.0% |
| !! | TAAAACTGACTTGTGAGGAG+AGG | - | chr3_4:6728511-6728530 | Msa0487660:intron | 40.0% |
| GCTCAATAGTTCTTGTCATG+AGG | + | chr3_4:6728592-6728611 | None:intergenic | 40.0% | |
| GAGCTTCTGTTAAGATCTGT+TGG | + | chr3_4:6728658-6728677 | None:intergenic | 40.0% | |
| !! | CTACACAAAACTGACTTGTG+AGG | - | chr3_4:6728716-6728735 | Msa0487660:CDS | 40.0% |
| CTTGATGCCCAAAACTACTT+TGG | - | chr3_4:6728925-6728944 | Msa0487660:intron | 40.0% | |
| TGATGCCCAAAACTACTTTG+GGG | - | chr3_4:6728927-6728946 | Msa0487660:intron | 40.0% | |
| ! | AGACTCCCCAAAGTAGTTTT+GGG | + | chr3_4:6728935-6728954 | None:intergenic | 40.0% |
| ! | TAGACTCCCCAAAGTAGTTT+TGG | + | chr3_4:6728936-6728955 | None:intergenic | 40.0% |
| ! | CCATTGTGTGTTTGATTCGT+AGG | + | chr3_4:6729064-6729083 | None:intergenic | 40.0% |
| CCTACGAATCAAACACACAA+TGG | - | chr3_4:6729061-6729080 | Msa0487660:intron | 40.0% | |
| GACTTCCATGTTGTCAAATG+TGG | - | chr3_4:6729449-6729468 | Msa0487660:intron | 40.0% | |
| GCACCAACTGATATCAAAGA+AGG | - | chr3_4:6729712-6729731 | Msa0487660:intron | 40.0% | |
| ! | CAAAGAAGGCATGCTTCAAT+TGG | - | chr3_4:6729726-6729745 | Msa0487660:intron | 40.0% |
| AGGAATACCTGTGTTTCCAA+AGG | - | chr3_4:6729924-6729943 | Msa0487660:intron | 40.0% | |
| ACATTGTGATAAAATGCGGC+TGG | - | chr3_4:6730014-6730033 | Msa0487660:intron | 40.0% | |
| TTGCGGTTGTGATACCATTA+CGG | - | chr3_4:6730048-6730067 | Msa0487660:intron | 40.0% | |
| TCTATGCTACAATGGACCAT+TGG | - | chr3_4:6730219-6730238 | Msa0487660:CDS | 40.0% | |
| ATGGACCATTGGTAAATTGG+AGG | - | chr3_4:6730230-6730249 | Msa0487660:CDS | 40.0% | |
| ACCATTGGTAAATTGGAGGT+CGG | - | chr3_4:6730234-6730253 | Msa0487660:CDS | 40.0% | |
| ATGCAAACACTGCAAACCAA+GGG | + | chr3_4:6730611-6730630 | None:intergenic | 40.0% | |
| AATGCAAACACTGCAAACCA+AGG | + | chr3_4:6730612-6730631 | None:intergenic | 40.0% | |
| !! | ATAGAGGTCATTTCTGGTGA+TGG | - | chr3_4:6730663-6730682 | Msa0487660:intron | 40.0% |
| GGTGGGATGAACAAAGAATT+TGG | - | chr3_4:6730700-6730719 | Msa0487660:intron | 40.0% | |
| TGACAGAGGCAGTTAAGAAA+TGG | - | chr3_4:6730754-6730773 | Msa0487660:intron | 40.0% | |
| GAGGCAGTTAAGAAATGGTT+AGG | - | chr3_4:6730759-6730778 | Msa0487660:intron | 40.0% | |
| ! | AGCTTTGTACATGTCTCCAA+TGG | - | chr3_4:6730881-6730900 | Msa0487660:intron | 40.0% |
| ! | CATGTTTGGTCAACTTTTCC+TGG | - | chr3_4:6730980-6730999 | Msa0487660:intron | 40.0% |
| CGACCCCAAAAATCTTCGTA+TGG | - | chr3_4:6726708-6726727 | Msa0487660:CDS | 45.0% | |
| TGGTGACTGATAGACCTTCT+CGG | - | chr3_4:6726728-6726747 | Msa0487660:CDS | 45.0% | |
| CGAGACACATAAACAACACG+TGG | + | chr3_4:6727202-6727221 | None:intergenic | 45.0% | |
| GCACCTCCTTTGAATTTGTG+AGG | + | chr3_4:6727244-6727263 | None:intergenic | 45.0% | |
| TGGTTGTAGCTAAGAGTCTC+AGG | - | chr3_4:6727366-6727385 | Msa0487660:intron | 45.0% | |
| TGGACCTTATGTACTTGCAG+TGG | - | chr3_4:6727401-6727420 | Msa0487660:intron | 45.0% | |
| CAGTCCACTGCAAGTACATA+AGG | + | chr3_4:6727408-6727427 | None:intergenic | 45.0% | |
| !! | ATGGCTTGTTTGGCTGAAGA+TGG | + | chr3_4:6727450-6727469 | None:intergenic | 45.0% |
| TATCGACGGATGAACACTTG+AGG | + | chr3_4:6728060-6728079 | None:intergenic | 45.0% | |
| TCTCACTCTTGAGCTGATCT+AGG | - | chr3_4:6728437-6728456 | Msa0487660:intron | 45.0% | |
| ! | GAACTATTGAGCTTGGTTCG+TGG | - | chr3_4:6728600-6728619 | Msa0487660:intron | 45.0% |
| ! | GCTTGGTTCGTGGACATAAA+TGG | - | chr3_4:6728610-6728629 | Msa0487660:intron | 45.0% |
| TGGTTCGTGGACATAAATGG+TGG | - | chr3_4:6728613-6728632 | Msa0487660:intron | 45.0% | |
| ! | TCGTGGACATAAATGGTGGA+TGG | - | chr3_4:6728617-6728636 | Msa0487660:intron | 45.0% |
| CCACTCCACATTTGACAACA+TGG | + | chr3_4:6729457-6729476 | None:intergenic | 45.0% | |
| CCATGTTGTCAAATGTGGAG+TGG | - | chr3_4:6729454-6729473 | Msa0487660:intron | 45.0% | |
| ! | ATCTTTTGCACTGCAGAGGA+TGG | - | chr3_4:6729644-6729663 | Msa0487660:intron | 45.0% |
| GCATGCTTCAATTGGTGAAG+TGG | - | chr3_4:6729734-6729753 | Msa0487660:intron | 45.0% | |
| CCTTTCAAGAAGCAGACTTG+AGG | + | chr3_4:6729907-6729926 | None:intergenic | 45.0% | |
| CCTCAAGTCTGCTTCTTGAA+AGG | - | chr3_4:6729904-6729923 | Msa0487660:intron | 45.0% | |
| !!! | GCGGATTTTGAAGTCCGTAA+TGG | + | chr3_4:6730065-6730084 | None:intergenic | 45.0% |
| CCATTGGTAAATTGGAGGTC+GGG | - | chr3_4:6730235-6730254 | Msa0487660:CDS | 45.0% | |
| ACCACTTGACCTCAATCACT+TGG | - | chr3_4:6730349-6730368 | Msa0487660:intron | 45.0% | |
| ACCAAGTGATTGAGGTCAAG+TGG | + | chr3_4:6730353-6730372 | None:intergenic | 45.0% | |
| GAGCCATTACATAGCTAACC+AGG | + | chr3_4:6731001-6731020 | None:intergenic | 45.0% | |
| !!! | TTATATAATATTTTTTTTTG+TGG | - | chr3_4:6727310-6727329 | Msa0487660:intron | 5.0% |
| TGATAGACCTTCTCGGATCG+AGG | - | chr3_4:6726735-6726754 | Msa0487660:CDS | 50.0% | |
| GGATTTACCTCGATCCGAGA+AGG | + | chr3_4:6726745-6726764 | None:intergenic | 50.0% | |
| !! | AGGAGGTGCCCTCAATACAT+TGG | - | chr3_4:6727255-6727274 | Msa0487660:intron | 50.0% |
| TCAGACAATGTGGCAAGGGA+TGG | - | chr3_4:6727703-6727722 | Msa0487660:intron | 50.0% | |
| ACAATGTGGCAAGGGATGGA+TGG | - | chr3_4:6727707-6727726 | Msa0487660:intron | 50.0% | |
| TTACCACTGCCAGAAAGACC+CGG | + | chr3_4:6727743-6727762 | None:intergenic | 50.0% | |
| ! | GAACTTGTGGTTGGTGTGCT+TGG | - | chr3_4:6728472-6728491 | Msa0487660:intron | 50.0% |
| !! | GATGGTTTGTTGTCCTCGGA+TGG | + | chr3_4:6728983-6729002 | None:intergenic | 50.0% |
| ! | GGCTATCTTTTGCACTGCAG+AGG | - | chr3_4:6729640-6729659 | Msa0487660:intron | 50.0% |
| GGTGCACACCCTAAGAAACA+TGG | + | chr3_4:6729697-6729716 | None:intergenic | 50.0% | |
| GGCTGGTGCAGTTGAAATTG+CGG | - | chr3_4:6730031-6730050 | Msa0487660:intron | 50.0% | |
| CCCGACCTCCAATTTACCAA+TGG | + | chr3_4:6730238-6730257 | None:intergenic | 50.0% | |
| TTGGTAAATTGGAGGTCGGG+TGG | - | chr3_4:6730238-6730257 | Msa0487660:CDS | 50.0% | |
| TGTTACAGGTCACAGACCCT+TGG | - | chr3_4:6730592-6730611 | Msa0487660:intron | 50.0% | |
| GTGATGGCTCAGTGTCAATG+TGG | - | chr3_4:6730679-6730698 | Msa0487660:intron | 50.0% | |
| ATGGCTCAGTGTCAATGTGG+TGG | - | chr3_4:6730682-6730701 | Msa0487660:intron | 50.0% | |
| TGGCTCAGTGTCAATGTGGT+GGG | - | chr3_4:6730683-6730702 | Msa0487660:intron | 50.0% | |
| CAAGGGATGGATGGTCTGAG+AGG | - | chr3_4:6727716-6727735 | Msa0487660:intron | 55.0% | |
| GATGGATGGTCTGAGAGGTC+CGG | - | chr3_4:6727721-6727740 | Msa0487660:intron | 55.0% | |
| ATGGATGGTCTGAGAGGTCC+GGG | - | chr3_4:6727722-6727741 | Msa0487660:intron | 55.0% | |
| GAATCACTCAAGGCCATCCG+AGG | - | chr3_4:6728967-6728986 | Msa0487660:intron | 55.0% | |
| CTGAGAGGTCCGGGTCTTTC+TGG | - | chr3_4:6727731-6727750 | Msa0487660:intron | 60.0% | |
| ! | GGTCCGGGTCTTTCTGGCAG+TGG | - | chr3_4:6727737-6727756 | Msa0487660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 6726664 | 6731073 | 6726664 | ID=Msa0487660;Name=Msa0487660 |
| chr3_4 | mRNA | 6726664 | 6731073 | 6726664 | ID=Msa0487660-mRNA-1;Parent=Msa0487660;Name=Msa0487660-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|7|0|491 |
| chr3_4 | exon | 6730981 | 6731073 | 6730981 | ID=Msa0487660-mRNA-1:exon:2332;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6730461 | 6730562 | 6730461 | ID=Msa0487660-mRNA-1:exon:2331;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6730150 | 6730362 | 6730150 | ID=Msa0487660-mRNA-1:exon:2330;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6729928 | 6730030 | 6729928 | ID=Msa0487660-mRNA-1:exon:2329;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6728645 | 6728823 | 6728645 | ID=Msa0487660-mRNA-1:exon:2328;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6727828 | 6728139 | 6727828 | ID=Msa0487660-mRNA-1:exon:2327;Parent=Msa0487660-mRNA-1 |
| chr3_4 | exon | 6726664 | 6727137 | 6726664 | ID=Msa0487660-mRNA-1:exon:2326;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6730981 | 6731073 | 6730981 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6730461 | 6730562 | 6730461 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6730150 | 6730362 | 6730150 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6729928 | 6730030 | 6729928 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6728645 | 6728823 | 6728645 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6727828 | 6728139 | 6727828 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| chr3_4 | CDS | 6726664 | 6727137 | 6726664 | ID=Msa0487660-mRNA-1:cds;Parent=Msa0487660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
