AlfalfaGEDB | Msa0492080

M. sativa cultivar zhongmu-4 / Msa0492080

KEGG: -
GO: -
PFAM: PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492080	XP_013459009.2	84.411	526	51	5	2	519	1157	1659	0.0	894
Msa0492080	XP_013459009.2	87.666	527	35	4	1	519	317	821	0.0	900

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492080	sp\|O81833\|SD11_ARATH	50.851	529	214	9	2	519	322	815	4.92e-160	478

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492080	G7IYX6	87.666	527	35	4	1	519	317	821	0.0	900

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0139280	Msa0492080	0.807249	5.543291e-50	-8.615850e-47
Msa0349980	Msa0492080	0.829333	5.457480e-55	-8.615850e-47
Msa0488900	Msa0492080	0.811842	5.719615e-51	-8.615850e-47
Msa0492050	Msa0492080	0.831064	2.062925e-55	-8.615850e-47
Msa0492080	Msa0499870	0.818701	1.708695e-52	-8.615850e-47
Msa0492080	Msa0607620	0.807306	5.391728e-50	-8.615850e-47
Msa0492080	Msa0677110	0.805484	1.305270e-49	-8.615850e-47
Msa0492080	Msa1230190	0.806567	7.725616e-50	-8.615850e-47
Msa0492080	Msa1395700	0.816108	6.553344e-52	-8.615850e-47
Msa0492080	Msa1432250	0.802673	5.018237e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0492080	MtrunA17_Chr3g0084421	87.666	527	35	4	1	519	279	783	899
Msa0492080	MtrunA17_Chr3g0084411	84.411	526	51	5	2	519	318	820	895
Msa0492080	MtrunA17_Chr3g0084441	78.748	527	78	6	1	519	323	823	832
Msa0492080	MtrunA17_Chr3g0084451	77.861	533	78	7	1	519	317	823	828
Msa0492080	MtrunA17_Chr3g0084691	75.774	549	73	7	1	519	318	836	801
Msa0492080	MtrunA17_Chr3g0084491	77.230	527	78	8	1	519	331	823	799
Msa0492080	MtrunA17_Chr3g0084431	78.252	515	78	4	11	519	324	810	781
Msa0492080	MtrunA17_Chr3g0084681	71.727	527	72	7	1	519	320	777	734
Msa0492080	MtrunA17_Chr3g0084661	74.933	375	57	4	152	519	1	345	546
Msa0492080	MtrunA17_Chr2g0318811	53.184	534	205	8	1	519	312	815	543

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0492080	AT4G27290.2	50.196	510	211	9	8	498	325	810	4.65e-162	481
Msa0492080	AT4G27300.1	50.851	529	214	9	2	519	322	815	5.00e-161	478
Msa0492080	AT4G27290.1	49.098	499	187	8	8	498	325	764	4.95e-156	464
Msa0492080	AT1G65800.1	46.283	538	233	9	14	519	334	847	2.38e-149	449
Msa0492080	AT1G65790.1	44.043	554	246	7	2	519	318	843	6.11e-149	447
Msa0492080	AT4G21380.1	44.190	568	226	11	4	519	322	850	7.42e-144	435
Msa0492080	AT1G11340.1	43.455	550	249	13	2	519	314	833	3.21e-134	409
Msa0492080	AT1G11330.2	42.029	552	253	12	1	519	325	842	3.99e-131	401
Msa0492080	AT1G11330.1	42.000	550	254	12	1	519	325	840	4.18e-131	401
Msa0492080	AT1G11410.2	42.349	562	253	14	1	519	197	730	1.90e-129	394

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Find 240 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGATGACATCTT+AGG	0.448632	3_4:+15109050	None:intergenic
AAACAAAACTAACATGTTTG+TGG	0.427653	3_4:+15112709	None:intergenic
AAACCAAAATCGGATATCTT+TGG	0.277143	3_4:+15110084	None:intergenic
AAACGTTGTGATAATCCATT+TGG	0.328464	3_4:+15111798	None:intergenic
AAACTATGACTAGGGCGTAC+TGG	0.518726	3_4:-15110557	Msa0492080:intron
AAACTCTATAACTTAAAAGC+TGG	0.463412	3_4:-15113798	Msa0492080:five_prime_UTR
AAATTATTGACGGTATTGCT+CGG	0.505258	3_4:-15110197	Msa0492080:CDS
AACATCGGGACAAGGAACTG+AGG	0.697949	3_4:-15110497	Msa0492080:CDS
AACATCGGGGTTTGGCCTCG+TGG	0.568847	3_4:-15113356	Msa0492080:five_prime_UTR
AACCAAAATCGGATATCTTT+GGG	0.357407	3_4:+15110085	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGCATGGAAAGAATAAACT+TGG	-	chr3_4:15108774-15108793	Msa0492080:three_prime_UTR	30.0%
TACATACAAAAGAGAGTTTG+AGG	-	chr3_4:15108856-15108875	Msa0492080:three_prime_UTR	30.0%
TATAGAGTTTCCTGTGAAAT+GGG	+	chr3_4:15109246-15109265	None:intergenic	30.0%
TTATAGAGTTTCCTGTGAAA+TGG	+	chr3_4:15109247-15109266	None:intergenic	30.0%
TATCAATGTTGCAAACTTTG+GGG	+	chr3_4:15110201-15110220	None:intergenic	30.0%
GTATCAATGTTGCAAACTTT+GGG	+	chr3_4:15110202-15110221	None:intergenic	30.0%
AGTATCAATGTTGCAAACTT+TGG	+	chr3_4:15110203-15110222	None:intergenic	30.0%
AAGTTCAGTTTAGAGAAAGT+GGG	+	chr3_4:15110533-15110552	None:intergenic	30.0%
AAAGTTCAGTTTAGAGAAAG+TGG	+	chr3_4:15110534-15110553	None:intergenic	30.0%
TTAAATTGGATGAACTGACT+TGG	+	chr3_4:15110563-15110582	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	15108767	15114309	15108767	ID=Msa0492080;Name=Msa0492080
chr3_4	mRNA	15108767	15114309	15108767	ID=Msa0492080-mRNA-1;Parent=Msa0492080;Name=Msa0492080-mRNA-1;_AED=0.22;_eAED=0.22;_QI=2487\|0.71\|0.62\|1\|0.85\|0.75\|8\|129\|519
chr3_4	exon	15108767	15109207	15108767	ID=Msa0492080-mRNA-1:exon:4485;Parent=Msa0492080-mRNA-1
chr3_4	exon	15109439	15109669	15109439	ID=Msa0492080-mRNA-1:exon:4484;Parent=Msa0492080-mRNA-1
chr3_4	exon	15110038	15110296	15110038	ID=Msa0492080-mRNA-1:exon:4483;Parent=Msa0492080-mRNA-1
chr3_4	exon	15110409	15110566	15110409	ID=Msa0492080-mRNA-1:exon:4482;Parent=Msa0492080-mRNA-1
chr3_4	exon	15110657	15110808	15110657	ID=Msa0492080-mRNA-1:exon:4481;Parent=Msa0492080-mRNA-1
chr3_4	exon	15110969	15111085	15110969	ID=Msa0492080-mRNA-1:exon:4480;Parent=Msa0492080-mRNA-1
chr3_4	exon	15111374	15112455	15111374	ID=Msa0492080-mRNA-1:exon:4479;Parent=Msa0492080-mRNA-1
chr3_4	exon	15112574	15114309	15112574	ID=Msa0492080-mRNA-1:exon:4478;Parent=Msa0492080-mRNA-1
chr3_4	five_prime_UTR	15112574	15114309	15112574	ID=Msa0492080-mRNA-1:five_prime_utr;Parent=Msa0492080-mRNA-1
chr3_4	five_prime_UTR	15111705	15112455	15111705	ID=Msa0492080-mRNA-1:five_prime_utr;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15111374	15111704	15111374	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15110969	15111085	15110969	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15110657	15110808	15110657	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15110409	15110566	15110409	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15110038	15110296	15110038	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15109439	15109669	15109439	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	CDS	15108896	15109207	15108896	ID=Msa0492080-mRNA-1:cds;Parent=Msa0492080-mRNA-1
chr3_4	three_prime_UTR	15108767	15108895	15108767	ID=Msa0492080-mRNA-1:three_prime_utr;Parent=Msa0492080-mRNA-1

Gene Sequence

>Msa0492080

ATGCCAAAATTTCAACCAAAATGGGAGTCATCAAATTGGTCTGGTGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGATTTTTACCATACACAAACATGAAGTTGCCAGATACGTCAGCATCGTGGTTTGACAAAACCTTGAGCCTCGAGGAATGTAAGACAATGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAACTTTAGATATCAGAGATGGTGGTAGTGGCTGCATACTCTGGTTTAACAACATTGTGGACATGAGAATACATCAAGACCAAGGACAAGACATTTACATACGGATGGCATCTTCAGAACTTGATCATAAAAAGAATAAGCAGAAGTTGAAGCTTGCTGGGACTCTTGCAGGAGTTATTGCATTCATTATAGGACTAATAGTTCTTGTATTAGTCACATCAGCGTATAAAAAGAAGCTTGGGTATATAAAAAAGTTATTTCTCTGGAAGCACAAGGAGAAGGAAGATGGTGACTTGGCTACAATATTTGATTTTTCGACCATCACTAATGCAACAAATAACTTCTCTGTCAGAAACAAGTTGGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGCGTACTGGTAGACGGCCAAGAGATTGCTGTTAAGAGGCTATCAAAAACATCGGGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACACGATGAAAATTCTCATGCTAACTTAAGAATGTGTCATTTGTTAGATACTGCACGAAGTAAATTACTAGATTGGACTAAGCGTTTGGAAATTATTGACGGTATTGCTCGGGGGCTGTTGTATCTCCATCAGGATTCTACATTAAGAATCATACATAGAGATCTAAAGACAAGCAATATACTTCTTGATATTGATATGATCCCAAAGATATCCGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTACTGAAAACCTTCATTTCTGCTATGTCACAACCCCTTTTAATATTATATTTTTCCAACTTCAATGTTCTTTCTTGCAGTGGATATATGCCTCCAGAATATGCAGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTCGTTGTACTTGAGATAATTAGTGGTAGGAAGAATCGTGGATTTTGTGACCCTCTGCATCATCTAAACCTTCTTGGTCATGCATGGAGACTGTGGATTGAAGGCAAGCCAGAGGAGTTAATAGCTGACATATTATATGATGAGGCCATATGTTCAGAAATAATAAGATTTATTCATGTTGGTCTATTGTGTGTGCAACAGAAACCAGAAAATAGACCTAAGATGTCATCTGTGGTTTTTATGTTGAAGGGTGAAAAGGTACTCCCAAAACCAAGTGAACCCGGGTTCTACGCAGGAAGAGATAATAATAGTAATAATACAATCAGCACAGGATCTTCATCTAAAGGGTGTTCAGTAAATGAAGCTTCAATCTCATTGTTAGAGGCAAGATAG

Protein sequence

>Msa0492080

MPKFQPKWESSNWSGGCVRKTHLNCLHGDGFLPYTNMKLPDTSASWFDKTLSLEECKTMCLKNCSCTAYATLDIRDGGSGCILWFNNIVDMRIHQDQGQDIYIRMASSELDHKKNKQKLKLAGTLAGVIAFIIGLIVLVLVTSAYKKKLGYIKKLFLWKHKEKEDGDLATIFDFSTITNATNNFSVRNKLGEGGFGPVYKGVLVDGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQHDENSHANLRMCHLLDTARSKLLDWTKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVLKTFISAMSQPLLILYFSNFNVLSCSGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHHLNLLGHAWRLWIEGKPEELIADILYDEAICSEIIRFIHVGLLCVQQKPENRPKMSSVVFMLKGEKVLPKPSEPGFYAGRDNNSNNTISTGSSSKGCSVNEASISLLEAR*