AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607620 MtrunA17_Chr4g0039301 93.271 535 23 3 1 523 1 534 0.0 999
Msa0607620 MtrunA17_Chr7g0260671 50.417 480 219 11 37 506 25 495 4.97e-168 485
Msa0607620 MtrunA17_Chr7g0260681 51.969 381 162 10 61 432 52 420 2.64e-136 401
Msa0607620 MtrunA17_Chr2g0283561 43.659 410 194 8 88 484 38 423 3.51e-107 327
Msa0607620 MtrunA17_Chr4g0046011 40.758 422 209 10 88 499 3 393 4.65e-99 305
Msa0607620 MtrunA17_Chr4g0046001 39.192 421 217 9 88 499 12 402 2.14e-96 298
Msa0607620 MtrunA17_Chr7g0214711 45.143 350 161 10 89 430 105 431 1.02e-93 294
Msa0607620 MtrunA17_Chr4g0041311 36.111 432 215 9 91 489 30 433 1.56e-86 274
Msa0607620 MtrunA17_Chr5g0399641 38.667 375 194 7 93 449 139 495 2.57e-82 266
Msa0607620 MtrunA17_Chr7g0250561 38.931 393 190 8 93 450 73 450 7.15e-81 259
Msa0607620 MtrunA17_Chr7g0250611 39.678 373 184 9 88 446 74 419 1.52e-80 258
Msa0607620 MtrunA17_Chr4g0055691 39.947 378 198 8 82 449 122 480 4.33e-76 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607620 AT1G51440.1 69.316 453 126 5 66 507 64 514 0.0 649
Msa0607620 AT1G06800.1 51.181 508 226 10 12 503 3 504 0.0 520
Msa0607620 AT2G30550.2 56.433 443 177 7 71 504 86 521 4.36e-179 514
Msa0607620 AT1G06800.2 50.459 436 196 8 12 432 3 433 1.72e-151 441
Msa0607620 AT2G30550.1 57.143 371 144 6 71 433 86 449 9.68e-150 437
Msa0607620 AT1G30370.1 43.990 416 205 8 86 489 111 510 3.48e-120 363
Msa0607620 AT1G05800.1 47.309 353 158 9 87 431 78 410 5.78e-98 305
Msa0607620 AT2G31690.1 45.506 356 167 11 85 431 84 421 1.09e-94 296
Msa0607620 AT1G06250.1 39.753 405 208 7 93 484 9 390 3.16e-93 291
Msa0607620 AT4G18550.1 40.394 406 204 10 93 484 23 404 2.11e-92 288
Msa0607620 AT4G18550.2 40.394 406 204 10 93 484 40 421 4.92e-92 288
Msa0607620 AT2G42690.1 36.659 431 216 9 93 493 8 411 2.41e-86 273
Msa0607620 AT2G44810.2 40.260 385 180 11 87 446 84 443 5.17e-84 268
Msa0607620 AT2G44810.1 40.584 377 174 11 95 446 2 353 2.62e-83 263
Msa0607620 AT4G16820.1 40.000 390 188 10 78 448 116 478 1.97e-78 255
Msa0607620 AT4G18550.3 42.105 266 139 7 93 347 40 301 3.83e-63 209
Msa0607620 AT1G06250.2 40.134 299 148 5 194 484 1 276 9.68e-63 207
Msa0607620 AT5G18630.3 30.818 159 88 5 214 370 100 238 4.69e-11 64.3
Msa0607620 AT5G18630.1 30.818 159 88 5 214 370 101 239 5.69e-11 64.7
Msa0607620 AT5G18630.2 30.818 159 88 5 214 370 100 238 5.91e-11 64.7
Msa0607620 AT5G18640.5 30.818 159 88 5 214 370 100 238 6.65e-11 63.9
Msa0607620 AT5G18640.1 30.818 159 88 5 214 370 100 238 9.86e-11 63.9
Msa0607620 AT5G18640.3 30.818 159 88 5 214 370 100 238 9.86e-11 63.9

Find 142 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGAACTGAAATTAAAT+TGG 0.207992 4_2:-54580131 Msa0607620:CDS
AATTTAATATGGTTTCAAAA+AGG 0.225064 4_2:-54580003 Msa0607620:CDS
TTAGATTTCTTGAAGAATTT+AGG 0.245553 4_2:+54582799 None:intergenic
TTAATAGAGTAATGGTAATA+AGG 0.248705 4_2:+54583460 None:intergenic
TGGTGGGAATGGGAAGGATA+TGG 0.251258 4_2:+54583264 None:intergenic
TTTGAAGGAAAATGGTGATT+TGG 0.252255 4_2:-54580089 Msa0607620:CDS
ATTGTTGGATTTGTGGTTGA+TGG 0.253342 4_2:+54583227 None:intergenic
TTATCTTAATTCATCGATAT+TGG 0.269992 4_2:+54579508 None:intergenic
CCTGTTTCTACTTTGATTGA+TGG 0.275271 4_2:+54580589 None:intergenic
TTGAAGGAAAATGGTGATTT+GGG 0.292625 4_2:-54580088 Msa0607620:CDS
GCTTACGACATAGCCGAATT+AGG 0.294321 4_2:-54580397 Msa0607620:CDS
AAATCCAAGGCGAGAACAAC+TGG 0.302827 4_2:-54583038 Msa0607620:CDS
AATAATATAGGCGAATTATT+AGG 0.307627 4_2:+54583183 None:intergenic
AGTGCAGGATTGTTCTTTCT+TGG 0.310372 4_2:+54580549 None:intergenic
TGGAGACAAGATGAGAATAA+AGG 0.322904 4_2:-54579917 Msa0607620:CDS
TGCATAGAGGTAGCGGCTTA+TGG 0.364333 4_2:+54582840 None:intergenic
GATTAGAGATATATAATATA+AGG 0.368827 4_2:+54583418 None:intergenic
GATGATGTTCACTCCTAATT+CGG 0.369822 4_2:+54580384 None:intergenic
CTTCCCAGTTGTTCTCGCCT+TGG 0.372841 4_2:+54583034 None:intergenic
GGCTTTCGTTGAGCGATGTA+TGG 0.379405 4_2:-54583065 Msa0607620:CDS
CGCGAACGAGTAAACCGTTA+TGG 0.379883 4_2:+54580333 None:intergenic
GGAAAGGAAAAGGGTATTGT+TGG 0.381722 4_2:+54583212 None:intergenic
CGTTCGCGGGGCCGAGAGTT+GGG 0.383970 4_2:-54580318 Msa0607620:CDS
AATTAGTAAGTGAAATTAGT+TGG 0.384656 4_2:-54583523 Msa0607620:five_prime_UTR
TGTGGAGCCCTTATGCTAAC+TGG 0.384668 4_2:-54582765 Msa0607620:CDS
CAAATCACGTGGTCCTTGAT+TGG 0.386663 4_2:+54579765 None:intergenic
ATAAGAGTTGTGATCTTCTA+AGG 0.392001 4_2:-54579964 Msa0607620:CDS
TTGAAACTGAAATTTCTCAT+TGG 0.419763 4_2:+54580198 None:intergenic
TCGTTCGCGGGGCCGAGAGT+TGG 0.421350 4_2:-54580319 Msa0607620:CDS
GGAATTTGCACTTTAAAGAA+AGG 0.421543 4_2:-54580297 Msa0607620:CDS
GCAAGATGATGTGCAATATC+TGG 0.423197 4_2:+54579830 None:intergenic
CATCTTCCTCTTCGTGCAGT+TGG 0.426552 4_2:+54583127 None:intergenic
TTCTCATTGGTTATAATCCC+CGG 0.428050 4_2:+54580211 None:intergenic
GTGAAATTAGTTGGTTTACA+TGG 0.428115 4_2:-54583514 Msa0607620:five_prime_UTR
GGAGACAAGATGAGAATAAA+GGG 0.429109 4_2:-54579916 Msa0607620:CDS
GACAAGGTTCCAACCGTGCC+GGG 0.432120 4_2:-54580229 Msa0607620:CDS
AAAGGGTATTGTTGGATTTG+TGG 0.432416 4_2:+54583220 None:intergenic
GCTTCCACTAGAGGCCGTTC+AGG 0.434299 4_2:+54579860 None:intergenic
GAAGAAGAGATTAAACGTTT+AGG 0.434314 4_2:-54582715 Msa0607620:CDS
TGATGCTGATTTCTTCATCT+TGG 0.436804 4_2:+54580464 None:intergenic
GGTGGGAATGGGAAGGATAT+GGG 0.438040 4_2:+54583265 None:intergenic
CCTTGGAGTTATGCTCATGT+TGG 0.439341 4_2:-54580148 Msa0607620:CDS
CCATCAATCAAAGTAGAAAC+AGG 0.440706 4_2:-54580589 Msa0607620:CDS
CTGTTTCTACTTTGATTGAT+GGG 0.442102 4_2:+54580590 None:intergenic
TATCCCATCCAGTTAGCATA+AGG 0.442825 4_2:+54582757 None:intergenic
TTTAATCTCTTCTTCGTTGG+TGG 0.443070 4_2:+54582723 None:intergenic
GATCTTCTAAGGAGTGAGTT+TGG 0.443725 4_2:-54579953 Msa0607620:CDS
TAATAGAGTAATGGTAATAA+GGG 0.449692 4_2:+54583461 None:intergenic
ATAAGGTGTGTGTTTATGTA+TGG 0.449724 4_2:+54583435 None:intergenic
TTGAATATAGATGGTGGGAA+TGG 0.451272 4_2:+54583253 None:intergenic
GCGAACGAGTAAACCGTTAT+GGG 0.455006 4_2:+54580334 None:intergenic
GTTATAATCCCCGGCACGGT+TGG 0.455037 4_2:+54580220 None:intergenic
ATAACGGTTTACTCGTTCGC+GGG 0.455590 4_2:-54580331 Msa0607620:CDS
CGTTTAGGACGCCGTGACAT+AGG 0.461230 4_2:-54582700 Msa0607620:intron
GAGCATTTGAGGAATAATAT+AGG 0.461593 4_2:+54583171 None:intergenic
TATGTATGTTTCATTTAGCT+AGG 0.466276 4_2:-54579599 Msa0607620:three_prime_UTR
GTAGAATAAAAGATAGATAG+TGG 0.468844 4_2:-54583358 Msa0607620:five_prime_UTR
CATTTGATGGATGGGTATCA+TGG 0.469639 4_2:-54580037 Msa0607620:CDS
TGAATATAGATGGTGGGAAT+GGG 0.473721 4_2:+54583254 None:intergenic
AAAGAAAGGTGTGAAGAACT+TGG 0.475583 4_2:-54580283 Msa0607620:CDS
AAACAAGATGATGGATGTAA+AGG 0.476717 4_2:-54579728 Msa0607620:three_prime_UTR
GGGGTGTACACATAATTTAG+AGG 0.480604 4_2:-54580068 Msa0607620:CDS
TATGTCGTAAGCGCTGAGTA+TGG 0.482762 4_2:+54580408 None:intergenic
ACGAAGAAGAAGAGCATTTG+AGG 0.487614 4_2:+54583160 None:intergenic
CTCTTTATATAGTGATTGCA+TGG 0.493736 4_2:-54580687 Msa0607620:intron
TGATATAGATTTAAAATATG+TGG 0.496003 4_2:-54579570 Msa0607620:three_prime_UTR
ATGATTTCTTTGCGTAGGAT+AGG 0.496867 4_2:+54582991 None:intergenic
TTATATAGTGATTGCATGGA+GGG 0.497247 4_2:-54580683 Msa0607620:intron
GGGATGGTTCAAACCGATGA+TGG 0.497989 4_2:-54579896 Msa0607620:CDS
ACGTTTAATCTCTTCTTCGT+TGG 0.501727 4_2:+54582720 None:intergenic
CACAACCCACCTTCCATCAT+CGG 0.503475 4_2:+54579883 None:intergenic
GATATAGATTTAAAATATGT+GGG 0.503709 4_2:-54579569 Msa0607620:three_prime_UTR
GGAGGCTAGAATGTTGGTTG+AGG 0.504919 4_2:+54583286 None:intergenic
AGGGTGTTATGAAGAAGAAC+AGG 0.507123 4_2:+54583306 None:intergenic
GAGAAACTTTACATGGGAGA+TGG 0.511262 4_2:-54582868 Msa0607620:CDS
GATCAAAACTCAAAATATTG+TGG 0.513294 4_2:-54582922 Msa0607620:CDS
TGACAAGGTTCCAACCGTGC+CGG 0.514175 4_2:-54580230 Msa0607620:CDS
TTTCTTTGAGAAACTTTACA+TGG 0.516670 4_2:-54582875 Msa0607620:CDS
GAGGCTAGAATGTTGGTTGA+GGG 0.517399 4_2:+54583287 None:intergenic
TTGCGTAGGATAGGATCCAT+TGG 0.518415 4_2:+54583000 None:intergenic
GCATTGGTAGCTTCCAATCA+AGG 0.520891 4_2:-54579778 Msa0607620:CDS
TGTGCCTGAACGGCCTCTAG+TGG 0.525389 4_2:-54579864 Msa0607620:CDS
AAGTGCAAATTCCCAACTCT+CGG 0.525702 4_2:+54580307 None:intergenic
TGAGAATGAACAATAAGTGC+AGG 0.528179 4_2:+54580534 None:intergenic
GCACCGTGACATACATAGAA+TGG 0.533607 4_2:-54580660 Msa0607620:CDS
GGAAGGTCTATTAGATCCAA+TGG 0.534597 4_2:-54583016 Msa0607620:CDS
ATCCCATCCAGTTAGCATAA+GGG 0.536253 4_2:+54582758 None:intergenic
GAGCCCTTATGCTAACTGGA+TGG 0.539926 4_2:-54582761 Msa0607620:CDS
GATATGGGAGGCTAGAATGT+TGG 0.543569 4_2:+54583280 None:intergenic
TTCGTGCAGTTGGTTCATAG+TGG 0.544421 4_2:+54583137 None:intergenic
CGTAAGCGCTGAGTATGGCT+AGG 0.545238 4_2:+54580413 None:intergenic
CGCAAAGAAATCATTCGCTA+TGG 0.545659 4_2:-54582982 Msa0607620:CDS
AGTTTCTCAAAGAAATGTGC+AGG 0.546930 4_2:+54582883 None:intergenic
ATGTATGTTTCATTTAGCTA+GGG 0.547172 4_2:-54579598 Msa0607620:three_prime_UTR
AAAGTATATAGAAGATACAT+TGG 0.550653 4_2:-54580176 Msa0607620:CDS
TTGATGTTGCATAGAGGTAG+CGG 0.552703 4_2:+54582833 None:intergenic
ATTTCTTGAAGAATTTAGGA+AGG 0.554007 4_2:+54582803 None:intergenic
GAAATCAGCATCACAGTCAC+AGG 0.555372 4_2:-54580454 Msa0607620:CDS
ACAGTCACAGGACACAGTCT+TGG 0.567549 4_2:-54580442 Msa0607620:CDS
AACAACTAACGTCCCCATAA+CGG 0.568948 4_2:-54580347 Msa0607620:CDS
GGGAATGGGAAGGATATGGG+AGG 0.569870 4_2:+54583268 None:intergenic
TTCTCATCTTGTCTCCAATG+TGG 0.570582 4_2:+54579923 None:intergenic
AGTTTGGTGTTCCACCACAT+TGG 0.571065 4_2:-54579937 Msa0607620:CDS
TCAAGATGTTAATGGCTCGT+TGG 0.578326 4_2:+54583392 None:intergenic
AATCGCATTCAAAATCGCAT+TGG 0.579406 4_2:-54579794 Msa0607620:CDS
CATAACGGTTTACTCGTTCG+CGG 0.581601 4_2:-54580332 Msa0607620:CDS
GAAGGTGGGTTGTGCCTGAA+CGG 0.583884 4_2:-54579874 Msa0607620:CDS
AGCCCTTATGCTAACTGGAT+GGG 0.586402 4_2:-54582760 Msa0607620:CDS
TCATCTTGTCTCCAATGTGG+TGG 0.589893 4_2:+54579926 None:intergenic
GGTGGATGAGCTTCCACTAG+AGG 0.592564 4_2:+54579851 None:intergenic
TGGTTCAAACCGATGATGGA+AGG 0.596118 4_2:-54579892 Msa0607620:CDS
TATAGATGGTGGGAATGGGA+AGG 0.596124 4_2:+54583258 None:intergenic
TAAGGTGTGTGTTTATGTAT+GGG 0.598061 4_2:+54583436 None:intergenic
TTCAAACCGATGATGGAAGG+TGG 0.599261 4_2:-54579889 Msa0607620:CDS
ATTGGTTATAATCCCCGGCA+CGG 0.605638 4_2:+54580216 None:intergenic
AGCGAATGATTTCTTTGCGT+AGG 0.609122 4_2:+54582986 None:intergenic
TATATAGTGATTGCATGGAG+GGG 0.612515 4_2:-54580682 Msa0607620:intron
GTATGGGATTAATAGAGTAA+TGG 0.616267 4_2:+54583452 None:intergenic
TATCCATTCTATGTATGTCA+CGG 0.618336 4_2:+54580657 None:intergenic
ACAAGGTTCCAACCGTGCCG+GGG 0.622173 4_2:-54580228 Msa0607620:CDS
TTTATATAGTGATTGCATGG+AGG 0.625462 4_2:-54580684 Msa0607620:intron
TATGAACCAACTGCACGAAG+AGG 0.628820 4_2:-54583133 Msa0607620:CDS
ATTTGATGGATGGGTATCAT+GGG 0.630818 4_2:-54580036 Msa0607620:CDS
TAACGGTTTACTCGTTCGCG+GGG 0.632196 4_2:-54580330 Msa0607620:CDS
ACAAGATGAGAATAAAGGGA+TGG 0.636684 4_2:-54579912 Msa0607620:CDS
GTAAGCGCTGAGTATGGCTA+GGG 0.639224 4_2:+54580414 None:intergenic
AATCCAAGGCGAGAACAACT+GGG 0.639358 4_2:-54583037 Msa0607620:CDS
TTCTTTGAGAAACTTTACAT+GGG 0.642102 4_2:-54582874 Msa0607620:CDS
GGAGTGAACATCATCGAAGA+CGG 0.642474 4_2:-54580376 Msa0607620:CDS
TGATGTTTGATGTTGCATAG+AGG 0.642978 4_2:+54582827 None:intergenic
CAAGGCGAGAACAACTGGGA+AGG 0.645261 4_2:-54583033 Msa0607620:CDS
CGAACGAGTAAACCGTTATG+GGG 0.657882 4_2:+54580335 None:intergenic
AATCTAAGATCTCTTCTGTG+TGG 0.659350 4_2:-54582783 Msa0607620:CDS
CCAACATGAGCATAACTCCA+AGG 0.660120 4_2:+54580148 None:intergenic
TAGGGTACATACCTATGTCA+CGG 0.660260 4_2:+54582689 None:intergenic
AGTGGATCTAGTTCCTCGCA+TGG 0.665465 4_2:-54583340 Msa0607620:exon
TGAAGGAAAATGGTGATTTG+GGG 0.667189 4_2:-54580087 Msa0607620:CDS
GATGTATGGAGAGAAATCCA+AGG 0.668805 4_2:-54583051 Msa0607620:CDS
TCAAACCGATGATGGAAGGT+GGG 0.670175 4_2:-54579888 Msa0607620:CDS
AGATGATGTGCAATATCTGG+TGG 0.691855 4_2:+54579833 None:intergenic
AATACATAATATTCATGACA+AGG 0.698783 4_2:-54580245 Msa0607620:CDS
GGTACAAGAGAAGCCATGCG+AGG 0.705663 4_2:+54583327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAAAATAAAA+AGG - chr4_2:54580930-54580949 Msa0607620:intron 0.0%
!! AAAAAATAATAATAATAAAA+AGG + chr4_2:54582273-54582292 None:intergenic 0.0%
!!! TTATTACTTTTGATTTTTTA+GGG + chr4_2:54580850-54580869 None:intergenic 10.0%
!!! TTTATTACTTTTGATTTTTT+AGG + chr4_2:54580851-54580870 None:intergenic 10.0%
!! AAACAAAAAAAATAATATTC+TGG - chr4_2:54581482-54581501 Msa0607620:intron 10.0%
!! AACAAAAAAAATAATATTCT+GGG - chr4_2:54581483-54581502 Msa0607620:intron 10.0%
!!! ATGTTTTTAAAAGAAATAAT+TGG - chr4_2:54582046-54582065 Msa0607620:intron 10.0%
!! GAAAGATAAAAAATTTAATA+TGG - chr4_2:54583034-54583053 Msa0607620:CDS 10.0%
!! GATTAGAGATATATAATATA+AGG + chr4_2:54579633-54579652 None:intergenic 15.0%
!!! GTAATTAAATTAAGAGTATA+GGG + chr4_2:54580380-54580399 None:intergenic 15.0%
!!! ATATAAATATATGGTCTTTT+GGG + chr4_2:54580447-54580466 None:intergenic 15.0%
!!! AATATAAATATATGGTCTTT+TGG + chr4_2:54580448-54580467 None:intergenic 15.0%
!! TCAGAAACAATATAAATATA+TGG + chr4_2:54580456-54580475 None:intergenic 15.0%
!!! AATATTAACAACTTTTAATG+CGG - chr4_2:54580740-54580759 Msa0607620:intron 15.0%
!!! TATTACTTTTGATTTTTTAG+GGG + chr4_2:54580849-54580868 None:intergenic 15.0%
!! TCAAAAGTAATAAAATTCAT+TGG - chr4_2:54580857-54580876 Msa0607620:intron 15.0%
!!! TTTTTTGAGATAAAATTCAT+TGG - chr4_2:54580889-54580908 Msa0607620:intron 15.0%
!! TAATGAAGGTAAAAAAAAAT+AGG + chr4_2:54581067-54581086 None:intergenic 15.0%
!!! TTTTCAATTTACAATAATGA+AGG + chr4_2:54581081-54581100 None:intergenic 15.0%
!!! AATCAAACAGTTTTAAAAAA+TGG - chr4_2:54581163-54581182 Msa0607620:intron 15.0%
!!! ATCAAACAGTTTTAAAAAAT+GGG - chr4_2:54581164-54581183 Msa0607620:intron 15.0%
!!! TTCTTTAGTGTTTTTTTTTT+GGG + chr4_2:54581320-54581339 None:intergenic 15.0%
!!! TTTCTTTAGTGTTTTTTTTT+TGG + chr4_2:54581321-54581340 None:intergenic 15.0%
!!! TATTATTTTTTTTGTTTCCA+AGG + chr4_2:54581479-54581498 None:intergenic 15.0%
!! ACTAAAAAAAGAAAAAAGAA+AGG - chr4_2:54581891-54581910 Msa0607620:intron 15.0%
!! CTAAAAAAAGAAAAAAGAAA+GGG - chr4_2:54581892-54581911 Msa0607620:intron 15.0%
!! ATTTCAATTATATATTGAGA+TGG + chr4_2:54581986-54582005 None:intergenic 15.0%
!!! AAAAAACTAGTATTTTTCTA+TGG + chr4_2:54582186-54582205 None:intergenic 15.0%
!! AAATTTCTTCAAAAAAGTAA+AGG - chr4_2:54582235-54582254 Msa0607620:intron 15.0%
!! AATTTAATATGGTTTCAAAA+AGG - chr4_2:54583045-54583064 Msa0607620:CDS 15.0%
!! ATTTAATATGGTTTCAAAAA+GGG - chr4_2:54583046-54583065 Msa0607620:CDS 15.0%
!!! TGATATAGATTTAAAATATG+TGG - chr4_2:54583478-54583497 Msa0607620:five_prime_UTR 15.0%
!!! GATATAGATTTAAAATATGT+GGG - chr4_2:54583479-54583498 Msa0607620:five_prime_UTR 15.0%
!!! AGTTTCTTTTATTAAAACTT+AGG - chr4_2:54583503-54583522 Msa0607620:five_prime_UTR 15.0%
!! AATTAGTAAGTGAAATTAGT+TGG - chr4_2:54579525-54579544 Msa0607620:three_prime_UTR 20.0%
!! TAATAGAGTAATGGTAATAA+GGG + chr4_2:54579590-54579609 None:intergenic 20.0%
!! TTAATAGAGTAATGGTAATA+AGG + chr4_2:54579591-54579610 None:intergenic 20.0%
!! AAAAATCATCAAGATGTTAA+TGG + chr4_2:54579667-54579686 None:intergenic 20.0%
!!! AATTATTAGGTTTTTTGGAA+AGG + chr4_2:54579855-54579874 None:intergenic 20.0%
!! AATAATATAGGCGAATTATT+AGG + chr4_2:54579868-54579887 None:intergenic 20.0%
!! TTAGATTTCTTGAAGAATTT+AGG + chr4_2:54580252-54580271 None:intergenic 20.0%
!!! GGTAATTAAATTAAGAGTAT+AGG + chr4_2:54580381-54580400 None:intergenic 20.0%
!!! ACTTATCTTTATTTTATGAG+TGG + chr4_2:54580402-54580421 None:intergenic 20.0%
!! ACAAACTCGTAAATTAAAAA+TGG + chr4_2:54581129-54581148 None:intergenic 20.0%
!!! TCAAACAGTTTTAAAAAATG+GGG - chr4_2:54581165-54581184 Msa0607620:intron 20.0%
!!! TAAGAGTTTAACTTTAAAAC+AGG - chr4_2:54581226-54581245 Msa0607620:intron 20.0%
!!! AAGAGTTTAACTTTAAAACA+GGG - chr4_2:54581227-54581246 Msa0607620:intron 20.0%
!!! TCTTTAGTGTTTTTTTTTTG+GGG + chr4_2:54581319-54581338 None:intergenic 20.0%
!!! AAAACACTTAATTTTTCAAG+TGG + chr4_2:54581693-54581712 None:intergenic 20.0%
!! AGAGAGAAAATCATTATTTA+TGG + chr4_2:54581756-54581775 None:intergenic 20.0%
!! GAATATTGCTATAAAAAAGA+TGG + chr4_2:54581939-54581958 None:intergenic 20.0%
!! TTAAAAGAAATAATTGGTGA+CGG - chr4_2:54582052-54582071 Msa0607620:intron 20.0%
!! AACCACTATAATTATTGTTA+TGG + chr4_2:54582145-54582164 None:intergenic 20.0%
!! ATAATAATAAAAAGGTCCAA+GGG + chr4_2:54582265-54582284 None:intergenic 20.0%
!! AATAATAATAAAAAGGTCCA+AGG + chr4_2:54582266-54582285 None:intergenic 20.0%
!! AATACATAATATTCATGACA+AGG - chr4_2:54582803-54582822 Msa0607620:CDS 20.0%
!! AAAGTATATAGAAGATACAT+TGG - chr4_2:54582872-54582891 Msa0607620:CDS 20.0%
!!! CATACATACTTTTTTTTAAG+AGG + chr4_2:54583437-54583456 None:intergenic 20.0%
! GTAGAATAAAAGATAGATAG+TGG - chr4_2:54579690-54579709 Msa0607620:three_prime_UTR 25.0%
!!! TGATGGATTTTGAATATAGA+TGG + chr4_2:54579807-54579826 None:intergenic 25.0%
! GATCAAAACTCAAAATATTG+TGG - chr4_2:54580126-54580145 Msa0607620:CDS 25.0%
!! TTTCTTTGAGAAACTTTACA+TGG - chr4_2:54580173-54580192 Msa0607620:CDS 25.0%
!! TTCTTTGAGAAACTTTACAT+GGG - chr4_2:54580174-54580193 Msa0607620:CDS 25.0%
! ATTTCTTGAAGAATTTAGGA+AGG + chr4_2:54580248-54580267 None:intergenic 25.0%
! TTATTGGCAAAAAAAACATG+TGG - chr4_2:54580658-54580677 Msa0607620:CDS 25.0%
! TATTGGCAAAAAAAACATGT+GGG - chr4_2:54580659-54580678 Msa0607620:CDS 25.0%
! GAAAGAAAAAAGTTTGTGAT+TGG - chr4_2:54580689-54580708 Msa0607620:intron 25.0%
! TAAAAAGGCTTAAAACGATA+CGG - chr4_2:54580945-54580964 Msa0607620:intron 25.0%
!! ATCCTTTAAAAACTAAAACC+GGG + chr4_2:54581274-54581293 None:intergenic 25.0%
!! CATCCTTTAAAAACTAAAAC+CGG + chr4_2:54581275-54581294 None:intergenic 25.0%
! CTTGAACTAGTAATCTATTA+TGG - chr4_2:54581586-54581605 Msa0607620:intron 25.0%
! TCAATTATATATTGAGATGG+TGG + chr4_2:54581983-54582002 None:intergenic 25.0%
!! TATTGTTATGGAGAACATTT+TGG + chr4_2:54582133-54582152 None:intergenic 25.0%
! CTCCATAACAATAATTATAG+TGG - chr4_2:54582140-54582159 Msa0607620:intron 25.0%
! TTGAAACTGAAATTTCTCAT+TGG + chr4_2:54582853-54582872 None:intergenic 25.0%
! TGTTGGAACTGAAATTAAAT+TGG - chr4_2:54582917-54582936 Msa0607620:CDS 25.0%
!!! TAGAAATAGTCCTTTTTTGA+AGG - chr4_2:54582944-54582963 Msa0607620:CDS 25.0%
! TATGTATGTTTCATTTAGCT+AGG - chr4_2:54583449-54583468 Msa0607620:five_prime_UTR 25.0%
! ATGTATGTTTCATTTAGCTA+GGG - chr4_2:54583450-54583469 Msa0607620:five_prime_UTR 25.0%
! GTGAAATTAGTTGGTTTACA+TGG - chr4_2:54579534-54579553 Msa0607620:three_prime_UTR 30.0%
GTATGGGATTAATAGAGTAA+TGG + chr4_2:54579599-54579618 None:intergenic 30.0%
TAAGGTGTGTGTTTATGTAT+GGG + chr4_2:54579615-54579634 None:intergenic 30.0%
ATAAGGTGTGTGTTTATGTA+TGG + chr4_2:54579616-54579635 None:intergenic 30.0%
! GGATTTTGAATATAGATGGT+GGG + chr4_2:54579803-54579822 None:intergenic 30.0%
! TGGATTTTGAATATAGATGG+TGG + chr4_2:54579804-54579823 None:intergenic 30.0%
!!! AGGTTTTTTGGAAAGGAAAA+GGG + chr4_2:54579848-54579867 None:intergenic 30.0%
!!! TAGGTTTTTTGGAAAGGAAA+AGG + chr4_2:54579849-54579868 None:intergenic 30.0%
!!! AGGCGAATTATTAGGTTTTT+TGG + chr4_2:54579860-54579879 None:intergenic 30.0%
GAGCATTTGAGGAATAATAT+AGG + chr4_2:54579880-54579899 None:intergenic 30.0%
AAGAAGAAGAAGAAGAATCA+CGG - chr4_2:54579962-54579981 Msa0607620:CDS 30.0%
GAAGAAGAGATTAAACGTTT+AGG - chr4_2:54580333-54580352 Msa0607620:CDS 30.0%
! AATTGTTTCTTCTCTCTCTT+TGG - chr4_2:54580482-54580501 Msa0607620:CDS 30.0%
! ACTGACTTAGATGTATACAA+TGG - chr4_2:54580515-54580534 Msa0607620:CDS 30.0%
!!! TTTGCTATTCTTTTGACATG+TGG - chr4_2:54580629-54580648 Msa0607620:CDS 30.0%
!! TTGCTATTCTTTTGACATGT+GGG - chr4_2:54580630-54580649 Msa0607620:CDS 30.0%
AGAAAAAAGTTTGTGATTGG+TGG - chr4_2:54580692-54580711 Msa0607620:intron 30.0%
AAAAAATGGGGAATTAACTG+TGG - chr4_2:54581177-54581196 Msa0607620:intron 30.0%
ACTAATTGACCACTTTACAA+TGG - chr4_2:54581201-54581220 Msa0607620:intron 30.0%
! TAACTAATATTTTCGTGCCT+TGG - chr4_2:54581459-54581478 Msa0607620:intron 30.0%
TTTAGTTATGTTTGTGCGTA+AGG + chr4_2:54581877-54581896 None:intergenic 30.0%
!! ATGGAGAACATTTTGGTATT+TGG + chr4_2:54582126-54582145 None:intergenic 30.0%
CTCTTTATATAGTGATTGCA+TGG - chr4_2:54582361-54582380 Msa0607620:intron 30.0%
TTTATATAGTGATTGCATGG+AGG - chr4_2:54582364-54582383 Msa0607620:intron 30.0%
TTATATAGTGATTGCATGGA+GGG - chr4_2:54582365-54582384 Msa0607620:intron 30.0%
TATCCATTCTATGTATGTCA+CGG + chr4_2:54582394-54582413 None:intergenic 30.0%
! CTTCATGTAGAATGTCTTTT+AGG + chr4_2:54582422-54582441 None:intergenic 30.0%
!! CTGTTTCTACTTTGATTGAT+GGG + chr4_2:54582461-54582480 None:intergenic 30.0%
! GGAATTTGCACTTTAAAGAA+AGG - chr4_2:54582751-54582770 Msa0607620:CDS 30.0%
!!! AGTCCTTTTTTGAAGGAAAA+TGG - chr4_2:54582951-54582970 Msa0607620:CDS 30.0%
! TCACCATTTTCCTTCAAAAA+AGG + chr4_2:54582957-54582976 None:intergenic 30.0%
TTTGAAGGAAAATGGTGATT+TGG - chr4_2:54582959-54582978 Msa0607620:CDS 30.0%
TTGAAGGAAAATGGTGATTT+GGG - chr4_2:54582960-54582979 Msa0607620:CDS 30.0%
!! TACTTTTGCATTTGATGGAT+GGG - chr4_2:54583003-54583022 Msa0607620:CDS 30.0%
ATAAGAGTTGTGATCTTCTA+AGG - chr4_2:54583084-54583103 Msa0607620:CDS 30.0%
!!! CACGTGATTTGTTTTTTGTA+GGG - chr4_2:54583295-54583314 Msa0607620:CDS 30.0%
!! AAACAAGATGATGGATGTAA+AGG - chr4_2:54583320-54583339 Msa0607620:CDS 30.0%
!! TGAATATAGATGGTGGGAAT+GGG + chr4_2:54579797-54579816 None:intergenic 35.0%
!! TTGAATATAGATGGTGGGAA+TGG + chr4_2:54579798-54579817 None:intergenic 35.0%
ATTGTTGGATTTGTGGTTGA+TGG + chr4_2:54579824-54579843 None:intergenic 35.0%
!! AAAGGGTATTGTTGGATTTG+TGG + chr4_2:54579831-54579850 None:intergenic 35.0%
ATGATTTCTTTGCGTAGGAT+AGG + chr4_2:54580060-54580079 None:intergenic 35.0%
AGTTTCTCAAAGAAATGTGC+AGG + chr4_2:54580168-54580187 None:intergenic 35.0%
TGATGTTTGATGTTGCATAG+AGG + chr4_2:54580224-54580243 None:intergenic 35.0%
! AATCTAAGATCTCTTCTGTG+TGG - chr4_2:54580265-54580284 Msa0607620:CDS 35.0%
TTTAATCTCTTCTTCGTTGG+TGG + chr4_2:54580328-54580347 None:intergenic 35.0%
ACGTTTAATCTCTTCTTCGT+TGG + chr4_2:54580331-54580350 None:intergenic 35.0%
!!! TGACATGTGGGTTTTGTTAT+TGG - chr4_2:54580642-54580661 Msa0607620:CDS 35.0%
TGCGGAGATAGAGAAATTTA+TGG - chr4_2:54580758-54580777 Msa0607620:intron 35.0%
ACTCTTACTCCATTGTAAAG+TGG + chr4_2:54581213-54581232 None:intergenic 35.0%
ATAATAAAAAGGTCCAAGGG+CGG + chr4_2:54582262-54582281 None:intergenic 35.0%
TATATAGTGATTGCATGGAG+GGG - chr4_2:54582366-54582385 Msa0607620:intron 35.0%
!! CCTGTTTCTACTTTGATTGA+TGG + chr4_2:54582462-54582481 None:intergenic 35.0%
CCATCAATCAAAGTAGAAAC+AGG - chr4_2:54582459-54582478 Msa0607620:intron 35.0%
TGAGAATGAACAATAAGTGC+AGG + chr4_2:54582517-54582536 None:intergenic 35.0%
!!! GAAGTCGTTTTATTTCTGAG+AGG + chr4_2:54582554-54582573 None:intergenic 35.0%
!! TGATGCTGATTTCTTCATCT+TGG + chr4_2:54582587-54582606 None:intergenic 35.0%
GATGATGTTCACTCCTAATT+CGG + chr4_2:54582667-54582686 None:intergenic 35.0%
! AAAGAAAGGTGTGAAGAACT+TGG - chr4_2:54582765-54582784 Msa0607620:CDS 35.0%
! TTCTCATTGGTTATAATCCC+CGG + chr4_2:54582840-54582859 None:intergenic 35.0%
!!! AAGATACATTGGCTTTTCCT+TGG - chr4_2:54582883-54582902 Msa0607620:CDS 35.0%
TGAAGGAAAATGGTGATTTG+GGG - chr4_2:54582961-54582980 Msa0607620:CDS 35.0%
!!! AGAGGTACTTTTGCATTTGA+TGG - chr4_2:54582998-54583017 Msa0607620:CDS 35.0%
! GTACTTTTGCATTTGATGGA+TGG - chr4_2:54583002-54583021 Msa0607620:CDS 35.0%
! ATTTGATGGATGGGTATCAT+GGG - chr4_2:54583012-54583031 Msa0607620:CDS 35.0%
TGGAGACAAGATGAGAATAA+AGG - chr4_2:54583131-54583150 Msa0607620:CDS 35.0%
GGAGACAAGATGAGAATAAA+GGG - chr4_2:54583132-54583151 Msa0607620:CDS 35.0%
ACAAGATGAGAATAAAGGGA+TGG - chr4_2:54583136-54583155 Msa0607620:CDS 35.0%
AATCGCATTCAAAATCGCAT+TGG - chr4_2:54583254-54583273 Msa0607620:CDS 35.0%
CCTACAAAAAACAAATCACG+TGG + chr4_2:54583297-54583316 None:intergenic 35.0%
!!! CCACGTGATTTGTTTTTTGT+AGG - chr4_2:54583294-54583313 Msa0607620:CDS 35.0%
TGTAGGGAAAAACAAGATGA+TGG - chr4_2:54583311-54583330 Msa0607620:CDS 35.0%
TCAAGATGTTAATGGCTCGT+TGG + chr4_2:54579659-54579678 None:intergenic 40.0%
! AGGGTGTTATGAAGAAGAAC+AGG + chr4_2:54579745-54579764 None:intergenic 40.0%
!! GGAAAGGAAAAGGGTATTGT+TGG + chr4_2:54579839-54579858 None:intergenic 40.0%
!! ACGAAGAAGAAGAGCATTTG+AGG + chr4_2:54579891-54579910 None:intergenic 40.0%
GATGTATGGAGAGAAATCCA+AGG - chr4_2:54579997-54580016 Msa0607620:CDS 40.0%
GGAAGGTCTATTAGATCCAA+TGG - chr4_2:54580032-54580051 Msa0607620:CDS 40.0%
AGCGAATGATTTCTTTGCGT+AGG + chr4_2:54580065-54580084 None:intergenic 40.0%
CGCAAAGAAATCATTCGCTA+TGG - chr4_2:54580066-54580085 Msa0607620:CDS 40.0%
GAGAAACTTTACATGGGAGA+TGG - chr4_2:54580180-54580199 Msa0607620:CDS 40.0%
TTGATGTTGCATAGAGGTAG+CGG + chr4_2:54580218-54580237 None:intergenic 40.0%
ATCCCATCCAGTTAGCATAA+GGG + chr4_2:54580293-54580312 None:intergenic 40.0%
TATCCCATCCAGTTAGCATA+AGG + chr4_2:54580294-54580313 None:intergenic 40.0%
TAGGGTACATACCTATGTCA+CGG + chr4_2:54580362-54580381 None:intergenic 40.0%
AAAAACTAAAACCGGGCCTA+CGG + chr4_2:54581267-54581286 None:intergenic 40.0%
!!! GGCCCGGTTTTAGTTTTTAA+AGG - chr4_2:54581269-54581288 Msa0607620:intron 40.0%
TTTATTCAGTGGGTGGTCAT+GGG + chr4_2:54581377-54581396 None:intergenic 40.0%
! TTTTATTCAGTGGGTGGTCA+TGG + chr4_2:54581378-54581397 None:intergenic 40.0%
ACCACCCACTGAATAAAAAG+CGG - chr4_2:54581380-54581399 Msa0607620:intron 40.0%
!!! ATGGCCGCTTTTTATTCAGT+GGG + chr4_2:54581387-54581406 None:intergenic 40.0%
!!! AATGGCCGCTTTTTATTCAG+TGG + chr4_2:54581388-54581407 None:intergenic 40.0%
AATAGATTGCAGTGCGTCAA+TGG + chr4_2:54581412-54581431 None:intergenic 40.0%
!!! AGCTCCTCTGTTTTAAAGCA+GGG + chr4_2:54581565-54581584 None:intergenic 40.0%
!!! TAGCTCCTCTGTTTTAAAGC+AGG + chr4_2:54581566-54581585 None:intergenic 40.0%
AGTGCAGGATTGTTCTTTCT+TGG + chr4_2:54582502-54582521 None:intergenic 40.0%
AACAACTAACGTCCCCATAA+CGG - chr4_2:54582701-54582720 Msa0607620:CDS 40.0%
AAGTGCAAATTCCCAACTCT+CGG + chr4_2:54582744-54582763 None:intergenic 40.0%
GGGGTGTACACATAATTTAG+AGG - chr4_2:54582980-54582999 Msa0607620:CDS 40.0%
! CATTTGATGGATGGGTATCA+TGG - chr4_2:54583011-54583030 Msa0607620:CDS 40.0%
! GATCTTCTAAGGAGTGAGTT+TGG - chr4_2:54583095-54583114 Msa0607620:CDS 40.0%
TTCTCATCTTGTCTCCAATG+TGG + chr4_2:54583128-54583147 None:intergenic 40.0%
AGATGATGTGCAATATCTGG+TGG + chr4_2:54583218-54583237 None:intergenic 40.0%
GCAAGATGATGTGCAATATC+TGG + chr4_2:54583221-54583240 None:intergenic 40.0%
! GAGGCTAGAATGTTGGTTGA+GGG + chr4_2:54579764-54579783 None:intergenic 45.0%
GATATGGGAGGCTAGAATGT+TGG + chr4_2:54579771-54579790 None:intergenic 45.0%
!! TATAGATGGTGGGAATGGGA+AGG + chr4_2:54579793-54579812 None:intergenic 45.0%
! TTCGTGCAGTTGGTTCATAG+TGG + chr4_2:54579914-54579933 None:intergenic 45.0%
TATGAACCAACTGCACGAAG+AGG - chr4_2:54579915-54579934 Msa0607620:CDS 45.0%
AAATCCAAGGCGAGAACAAC+TGG - chr4_2:54580010-54580029 Msa0607620:CDS 45.0%
AATCCAAGGCGAGAACAACT+GGG - chr4_2:54580011-54580030 Msa0607620:CDS 45.0%
TTGCGTAGGATAGGATCCAT+TGG + chr4_2:54580051-54580070 None:intergenic 45.0%
AGCCCTTATGCTAACTGGAT+GGG - chr4_2:54580288-54580307 Msa0607620:CDS 45.0%
! AAAACGATACGGCGCTGAAA+AGG - chr4_2:54580956-54580975 Msa0607620:intron 45.0%
!! GGCCTACGGATTTGTTAAGA+CGG + chr4_2:54581253-54581272 None:intergenic 45.0%
TCTTAACAAATCCGTAGGCC+CGG - chr4_2:54581253-54581272 Msa0607620:intron 45.0%
TCTGGGCCCCAAAAAAATTG+AGG - chr4_2:54581500-54581519 Msa0607620:intron 45.0%
!!! ACCGGGCCTCAATTTTTTTG+GGG + chr4_2:54581509-54581528 None:intergenic 45.0%
!!! CACCGGGCCTCAATTTTTTT+GGG + chr4_2:54581510-54581529 None:intergenic 45.0%
!!! ACACCGGGCCTCAATTTTTT+TGG + chr4_2:54581511-54581530 None:intergenic 45.0%
AAAAAGTAAAGGTCCGCCCT+TGG - chr4_2:54582246-54582265 Msa0607620:intron 45.0%
GCACCGTGACATACATAGAA+TGG - chr4_2:54582388-54582407 Msa0607620:intron 45.0%
GAAATCAGCATCACAGTCAC+AGG - chr4_2:54582594-54582613 Msa0607620:intron 45.0%
!! TATGTCGTAAGCGCTGAGTA+TGG + chr4_2:54582643-54582662 None:intergenic 45.0%
GCTTACGACATAGCCGAATT+AGG - chr4_2:54582651-54582670 Msa0607620:intron 45.0%
GGAGTGAACATCATCGAAGA+CGG - chr4_2:54582672-54582691 Msa0607620:intron 45.0%
CGAACGAGTAAACCGTTATG+GGG + chr4_2:54582716-54582735 None:intergenic 45.0%
GCGAACGAGTAAACCGTTAT+GGG + chr4_2:54582717-54582736 None:intergenic 45.0%
CATAACGGTTTACTCGTTCG+CGG - chr4_2:54582716-54582735 Msa0607620:CDS 45.0%
ATAACGGTTTACTCGTTCGC+GGG - chr4_2:54582717-54582736 Msa0607620:CDS 45.0%
ATTGGTTATAATCCCCGGCA+CGG + chr4_2:54582835-54582854 None:intergenic 45.0%
CCAACATGAGCATAACTCCA+AGG + chr4_2:54582903-54582922 None:intergenic 45.0%
CCTTGGAGTTATGCTCATGT+TGG - chr4_2:54582900-54582919 Msa0607620:CDS 45.0%
!! AGTTTGGTGTTCCACCACAT+TGG - chr4_2:54583111-54583130 Msa0607620:CDS 45.0%
TCATCTTGTCTCCAATGTGG+TGG + chr4_2:54583125-54583144 None:intergenic 45.0%
!! TGGTTCAAACCGATGATGGA+AGG - chr4_2:54583156-54583175 Msa0607620:CDS 45.0%
!! TTCAAACCGATGATGGAAGG+TGG - chr4_2:54583159-54583178 Msa0607620:CDS 45.0%
!! TCAAACCGATGATGGAAGGT+GGG - chr4_2:54583160-54583179 Msa0607620:CDS 45.0%
! GCATTGGTAGCTTCCAATCA+AGG - chr4_2:54583270-54583289 Msa0607620:CDS 45.0%
CAAATCACGTGGTCCTTGAT+TGG + chr4_2:54583286-54583305 None:intergenic 45.0%
!!! TGTAAAAAAAATTAAATTTT+AGG - chr4_2:54581293-54581312 Msa0607620:intron 5.0%
! AGTGGATCTAGTTCCTCGCA+TGG - chr4_2:54579708-54579727 Msa0607620:three_prime_UTR 50.0%
! GGAGGCTAGAATGTTGGTTG+AGG + chr4_2:54579765-54579784 None:intergenic 50.0%
GGTGGGAATGGGAAGGATAT+GGG + chr4_2:54579786-54579805 None:intergenic 50.0%
TGGTGGGAATGGGAAGGATA+TGG + chr4_2:54579787-54579806 None:intergenic 50.0%
CATCTTCCTCTTCGTGCAGT+TGG + chr4_2:54579924-54579943 None:intergenic 50.0%
GGCTTTCGTTGAGCGATGTA+TGG - chr4_2:54579983-54580002 Msa0607620:CDS 50.0%
! TGCATAGAGGTAGCGGCTTA+TGG + chr4_2:54580211-54580230 None:intergenic 50.0%
TGTGGAGCCCTTATGCTAAC+TGG - chr4_2:54580283-54580302 Msa0607620:CDS 50.0%
GAGCCCTTATGCTAACTGGA+TGG - chr4_2:54580287-54580306 Msa0607620:CDS 50.0%
! GATACGGCGCTGAAAAGGAA+CGG - chr4_2:54580961-54580980 Msa0607620:intron 50.0%
GGCCGTCTTAACAAATCCGT+AGG - chr4_2:54581248-54581267 Msa0607620:intron 50.0%
!!! GCCGCTTTTTATTCAGTGGG+TGG + chr4_2:54581384-54581403 None:intergenic 50.0%
TTGCAGTGCGTCAATGGCAA+TGG + chr4_2:54581406-54581425 None:intergenic 50.0%
GCCCCAAAAAAATTGAGGCC+CGG - chr4_2:54581505-54581524 Msa0607620:intron 50.0%
!!! CCTCTGTTTTAAAGCAGGGC+CGG + chr4_2:54581561-54581580 None:intergenic 50.0%
ACAGTCACAGGACACAGTCT+TGG - chr4_2:54582606-54582625 Msa0607620:intron 50.0%
!! GTAAGCGCTGAGTATGGCTA+GGG + chr4_2:54582637-54582656 None:intergenic 50.0%
CGCGAACGAGTAAACCGTTA+TGG + chr4_2:54582718-54582737 None:intergenic 50.0%
TAACGGTTTACTCGTTCGCG+GGG - chr4_2:54582718-54582737 Msa0607620:CDS 50.0%
GGGATGGTTCAAACCGATGA+TGG - chr4_2:54583152-54583171 Msa0607620:CDS 50.0%
CACAACCCACCTTCCATCAT+CGG + chr4_2:54583168-54583187 None:intergenic 50.0%
GGTACAAGAGAAGCCATGCG+AGG + chr4_2:54579724-54579743 None:intergenic 55.0%
GGGAATGGGAAGGATATGGG+AGG + chr4_2:54579783-54579802 None:intergenic 55.0%
CTTCCCAGTTGTTCTCGCCT+TGG + chr4_2:54580017-54580036 None:intergenic 55.0%
CAAGGCGAGAACAACTGGGA+AGG - chr4_2:54580015-54580034 Msa0607620:CDS 55.0%
! CGTTTAGGACGCCGTGACAT+AGG - chr4_2:54580348-54580367 Msa0607620:CDS 55.0%
!! CCGGCCCTGCTTTAAAACAG+AGG - chr4_2:54581558-54581577 Msa0607620:intron 55.0%
!! CGTAAGCGCTGAGTATGGCT+AGG + chr4_2:54582638-54582657 None:intergenic 55.0%
TGACAAGGTTCCAACCGTGC+CGG - chr4_2:54582818-54582837 Msa0607620:CDS 55.0%
GTTATAATCCCCGGCACGGT+TGG + chr4_2:54582831-54582850 None:intergenic 55.0%
!! GAAGGTGGGTTGTGCCTGAA+CGG - chr4_2:54583174-54583193 Msa0607620:CDS 55.0%
GGTGGATGAGCTTCCACTAG+AGG + chr4_2:54583200-54583219 None:intergenic 55.0%
TCGAGGCTGGGCTATGACAC+CGG + chr4_2:54581527-54581546 None:intergenic 60.0%
GTGTCATAGCCCAGCCTCGA+CGG - chr4_2:54581527-54581546 Msa0607620:intron 60.0%
TGTCATAGCCCAGCCTCGAC+GGG - chr4_2:54581528-54581547 Msa0607620:intron 60.0%
GACAAGGTTCCAACCGTGCC+GGG - chr4_2:54582819-54582838 Msa0607620:CDS 60.0%
ACAAGGTTCCAACCGTGCCG+GGG - chr4_2:54582820-54582839 Msa0607620:CDS 60.0%
TGTGCCTGAACGGCCTCTAG+TGG - chr4_2:54583184-54583203 Msa0607620:CDS 60.0%
GCTTCCACTAGAGGCCGTTC+AGG + chr4_2:54583191-54583210 None:intergenic 60.0%
CGAGGCTGGGCTATGACACC+GGG + chr4_2:54581526-54581545 None:intergenic 65.0%
!! AGCCCAGCCTCGACGGGCTA+TGG - chr4_2:54581534-54581553 Msa0607620:intron 70.0%
!! GCCCAGCCTCGACGGGCTAT+GGG - chr4_2:54581535-54581554 Msa0607620:intron 70.0%
GCCCATAGCCCGTCGAGGCT+GGG + chr4_2:54581539-54581558 None:intergenic 70.0%
!! AGCCTCGACGGGCTATGGGC+CGG - chr4_2:54581539-54581558 Msa0607620:intron 70.0%
TCGTTCGCGGGGCCGAGAGT+TGG - chr4_2:54582729-54582748 Msa0607620:CDS 70.0%
CGTTCGCGGGGCCGAGAGTT+GGG - chr4_2:54582730-54582749 Msa0607620:CDS 70.0%
GGCCCATAGCCCGTCGAGGC+TGG + chr4_2:54581540-54581559 None:intergenic 75.0%
! GGCCGGCCCATAGCCCGTCG+AGG + chr4_2:54581544-54581563 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54579521 54583549 54579521 ID=Msa0607620;Name=Msa0607620
chr4_2 mRNA 54579521 54583549 54579521 ID=Msa0607620-mRNA-1;Parent=Msa0607620;Name=Msa0607620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=206|1|1|1|1|1|2|248|523
chr4_2 exon 54579521 54580697 54579521 ID=Msa0607620-mRNA-1:exon:13684;Parent=Msa0607620-mRNA-1
chr4_2 exon 54582701 54583549 54582701 ID=Msa0607620-mRNA-1:exon:13683;Parent=Msa0607620-mRNA-1
chr4_2 five_prime_UTR 54583344 54583549 54583344 ID=Msa0607620-mRNA-1:five_prime_utr;Parent=Msa0607620-mRNA-1
chr4_2 CDS 54582701 54583343 54582701 ID=Msa0607620-mRNA-1:cds;Parent=Msa0607620-mRNA-1
chr4_2 CDS 54579769 54580697 54579769 ID=Msa0607620-mRNA-1:cds;Parent=Msa0607620-mRNA-1
chr4_2 three_prime_UTR 54579521 54579768 54579521 ID=Msa0607620-mRNA-1:three_prime_utr;Parent=Msa0607620-mRNA-1
Gene Sequence

>Msa0607620

ATGGCTTCTCTTGTACCTGTTCTTCTTCATAACACCCTCAACCAACATTCTAGCCTCCCATATCCTTCCCATTCCCACCATCTATATTCAAAATCCATCAACCACAAATCCAACAATACCCTTTTCCTTTCCAAAAAACCTAATAATTCGCCTATATTATTCCTCAAATGCTCTTCTTCTTCGTCCACTATGAACCAACTGCACGAAGAGGAAGATGAAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAATCACGGCTTTCGTTGAGCGATGTATGGAGAGAAATCCAAGGCGAGAACAACTGGGAAGGTCTATTAGATCCAATGGATCCTATCCTACGCAAAGAAATCATTCGCTATGGTGAGCTAGCTCAAGCATGTTACGATTCATTCGACTTTGATCAAAACTCAAAATATTGTGGAACATGCAAGTATCATCCTGCACATTTCTTTGAGAAACTTTACATGGGAGATGGATACACCATAAGCCGCTACCTCTATGCAACATCAAACATCAACCTTCCTAAATTCTTCAAGAAATCTAAGATCTCTTCTGTGTGGAGCCCTTATGCTAACTGGATGGGATACATAGCTGTTTCCACCAACGAAGAAGAGATTAAACGTTTAGGACGCCGTGACATAGTGATTGCATGGAGGGGCACCGTGACATACATAGAATGGATATACGACCTAAAAGACATTCTACATGAAGCAAACTTCAAAAACGACCCATCAATCAAAGTAGAAACAGGATTCTACGACTTATACACCAAGAAAGAACAATCCTGCACTTATTGTTCATTCTCAGCTCGAGAACAAGTCCTCTCAGAAATAAAACGACTTCTTCAATTCTACCAAGATGAAGAAATCAGCATCACAGTCACAGGACACAGTCTTGGTGCTGCCCTAGCCATACTCAGCGCTTACGACATAGCCGAATTAGGAGTGAACATCATCGAAGACGGTGACAAAACAACTAACGTCCCCATAACGGTTTACTCGTTCGCGGGGCCGAGAGTTGGGAATTTGCACTTTAAAGAAAGGTGTGAAGAACTTGGTGTTAAAGTTTTGAGAATACATAATATTCATGACAAGGTTCCAACCGTGCCGGGGATTATAACCAATGAGAAATTTCAGTTTCAAAAGTATATAGAAGATACATTGGCTTTTCCTTGGAGTTATGCTCATGTTGGAACTGAAATTAAATTGGATCATAGAAATAGTCCTTTTTTGAAGGAAAATGGTGATTTGGGGTGTACACATAATTTAGAGGTACTTTTGCATTTGATGGATGGGTATCATGGGAAAGATAAAAAATTTAATATGGTTTCAAAAAGGGATATTGCACTTGTGAATAAGAGTTGTGATCTTCTAAGGAGTGAGTTTGGTGTTCCACCACATTGGAGACAAGATGAGAATAAAGGGATGGTTCAAACCGATGATGGAAGGTGGGTTGTGCCTGAACGGCCTCTAGTGGAAGCTCATCCACCAGATATTGCACATCATCTTGCATTAGTGCTTAAAAATCGCATTCAAAATCGCATTGGTAGCTTCCAATCAAGGACCACGTGA

Protein sequence

>Msa0607620

MASLVPVLLHNTLNQHSSLPYPSHSHHLYSKSINHKSNNTLFLSKKPNNSPILFLKCSSSSSTMNQLHEEEDEEEEEKEEEEEESRLSLSDVWREIQGENNWEGLLDPMDPILRKEIIRYGELAQACYDSFDFDQNSKYCGTCKYHPAHFFEKLYMGDGYTISRYLYATSNINLPKFFKKSKISSVWSPYANWMGYIAVSTNEEEIKRLGRRDIVIAWRGTVTYIEWIYDLKDILHEANFKNDPSIKVETGFYDLYTKKEQSCTYCSFSAREQVLSEIKRLLQFYQDEEISITVTGHSLGAALAILSAYDIAELGVNIIEDGDKTTNVPITVYSFAGPRVGNLHFKERCEELGVKVLRIHNIHDKVPTVPGIITNEKFQFQKYIEDTLAFPWSYAHVGTEIKLDHRNSPFLKENGDLGCTHNLEVLLHLMDGYHGKDKKFNMVSKRDIALVNKSCDLLRSEFGVPPHWRQDENKGMVQTDDGRWVVPERPLVEAHPPDIAHHLALVLKNRIQNRIGSFQSRTT*