AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677110 MtrunA17_Chr4g0021031 96.063 508 16 3 1 508 1 504 0.0 988
Msa0677110 MtrunA17_Chr3g0090001 34.568 324 187 7 180 494 84 391 1.03e-41 154
Msa0677110 MtrunA17_Chr3g0145921 30.897 301 198 6 209 506 278 571 3.12e-40 153
Msa0677110 MtrunA17_Chr7g0264491 31.046 306 199 5 202 503 254 551 1.90e-35 139
Msa0677110 MtrunA17_Chr1g0180881 31.373 306 196 6 193 493 249 545 6.09e-35 137
Msa0677110 MtrunA17_Chr1g0146481 28.671 286 189 5 212 494 263 536 3.69e-24 105
Msa0677110 MtrunA17_Chr3g0126401 29.153 295 193 7 208 497 222 505 4.02e-22 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677110 AT1G64860.1 67.704 514 148 6 1 508 1 502 0.0 681
Msa0677110 AT1G64860.2 66.042 480 145 6 1 474 1 468 0.0 620
Msa0677110 AT1G08540.1 33.871 310 191 7 202 506 269 569 4.94e-44 164
Msa0677110 AT5G13730.1 35.738 305 175 7 197 494 114 404 2.42e-39 148
Msa0677110 AT2G36990.1 31.373 306 198 5 193 494 235 532 1.05e-36 143
Msa0677110 AT5G24120.1 31.419 296 185 7 208 497 225 508 1.02e-24 107
Msa0677110 AT5G24120.3 31.419 296 185 7 208 497 225 508 1.02e-24 107
Msa0677110 AT5G24120.2 31.419 296 185 7 208 497 225 508 1.02e-24 107
Msa0677110 AT3G53920.1 30.508 236 147 7 265 493 332 557 3.34e-22 100
Msa0677110 AT3G53920.2 29.771 131 92 0 213 343 280 410 1.75e-13 72.8

Find 131 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGCATCATGTGATTT+TGG 0.161123 4_4:+29489261 Msa0677110:CDS
AGATTTCAACTTATGTTTAT+TGG 0.176571 4_4:+29491230 Msa0677110:CDS
GAAATTGTTCGTCTTTATTA+TGG 0.204119 4_4:+29492890 Msa0677110:CDS
AAACAGTCGCCTCATCATTT+TGG 0.205479 4_4:-29493806 None:intergenic
TGCTCAAAGATATGATAATA+TGG 0.212191 4_4:+29491025 Msa0677110:CDS
ATGGCTACTGCAGCAGTTAT+TGG 0.235829 4_4:+29489174 Msa0677110:CDS
TATCAGGAAGTCAAATTTCT+AGG 0.248354 4_4:-29493652 None:intergenic
CCCTCTCTGAATGGTCTTCC+AGG 0.256681 4_4:+29492064 Msa0677110:CDS
CTTTCCTTTGAGACATATTA+AGG 0.259743 4_4:-29491886 None:intergenic
TATAGAGTGGAAGTTAAATT+TGG 0.261841 4_4:-29488799 None:intergenic
CCCCTGAAAATATTGTCTTT+TGG 0.264741 4_4:+29493723 Msa0677110:three_prime_UTR
TTTCTATAGGGTGGCTTGAT+TGG 0.278153 4_4:+29491163 Msa0677110:intron
TTTCTATAATATCTGAATAA+TGG 0.304580 4_4:-29489233 None:intergenic
TGATTCGGAACAATGGTTTC+AGG 0.310782 4_4:+29489434 Msa0677110:CDS
AAGGTATCTGTGACTTGTTC+TGG 0.322986 4_4:+29489615 Msa0677110:CDS
AACTAATAATGAGAAGAAAA+AGG 0.346613 4_4:-29493985 None:intergenic
AAAATTTGATGGTATAATAA+TGG 0.358175 4_4:+29489155 Msa0677110:exon
TGATAATATGGGTGCTGAAA+TGG 0.358343 4_4:+29491037 Msa0677110:CDS
TTCTGACATGGATTATTCAT+TGG 0.361813 4_4:+29489488 Msa0677110:CDS
GAGAAGTTTGATTCTTCAAA+AGG 0.365966 4_4:+29491202 Msa0677110:CDS
GTAATTGGTTGAAACAGATA+TGG 0.372387 4_4:-29488676 None:intergenic
ATGGAAAGAAGAGATGTAAT+TGG 0.381589 4_4:-29488691 None:intergenic
GGGGAATGCTTCCCTATCTA+AGG 0.388400 4_4:-29492044 None:intergenic
GGGAAGTTTCTGAAAGCAAT+AGG 0.399434 4_4:+29489107 Msa0677110:five_prime_UTR
CAGTTTATTGATAGTATAGT+AGG 0.400561 4_4:+29489132 Msa0677110:five_prime_UTR
TAAAACATGCCGCAAGGAAG+AGG 0.406736 4_4:+29493543 Msa0677110:CDS
AGTGGAAGTTAAATTTGGTT+AGG 0.407779 4_4:-29488794 None:intergenic
CTAGGAAGACTTGTATTAAG+AGG 0.411540 4_4:+29493830 Msa0677110:three_prime_UTR
CTTTAGATGAGCATAAATCT+AGG 0.414017 4_4:+29489841 Msa0677110:CDS
AAAATGAATAGATAAAGATA+TGG 0.414596 4_4:-29488710 None:intergenic
AGACGAAAGAGGACGATATG+AGG 0.422735 4_4:+29493680 Msa0677110:three_prime_UTR
AATGGAGTCTTTCATTTGAA+AGG 0.424190 4_4:+29489550 Msa0677110:CDS
TAGCGCAGTGCATGCTGATT+CGG 0.424289 4_4:+29489419 Msa0677110:CDS
TGAAATGGGTGACCTTGTTC+AGG 0.424346 4_4:+29491052 Msa0677110:CDS
AGCTGACTTACATCAATAGT+TGG 0.424691 4_4:-29491771 None:intergenic
ATACAATTCTAATGACTTTG+AGG 0.424774 4_4:+29489458 Msa0677110:CDS
AAGTATCACTTTGAGGTGTT+AGG 0.425489 4_4:+29493927 Msa0677110:three_prime_UTR
GTGCAGCTGGATAGCTTATT+CGG 0.433130 4_4:+29488906 Msa0677110:five_prime_UTR
TGTTCGTCTTTATTATGGAT+TGG 0.438429 4_4:+29492895 Msa0677110:CDS
TCTACTAAAGTATCACTTTG+AGG 0.451479 4_4:+29493920 Msa0677110:three_prime_UTR
GATAATATGGGTGCTGAAAT+GGG 0.453441 4_4:+29491038 Msa0677110:CDS
AAAATTAAATTAAATAGAAA+AGG 0.456293 4_4:-29488736 None:intergenic
CTTTCAGATGGTGGAAAAGT+TGG 0.468943 4_4:-29489351 None:intergenic
AATTTGGTTAGGAGAAAGAA+AGG 0.474659 4_4:-29488783 None:intergenic
ACTTATTCAAAACCGTTTGA+AGG 0.475324 4_4:+29489734 Msa0677110:CDS
GGCTTGATTGGACTACTTCG+TGG 0.478283 4_4:+29491175 Msa0677110:CDS
AAGTGTTGAGTGAGAATTCG+AGG 0.479531 4_4:+29489574 Msa0677110:CDS
TAATTGGTTGAAACAGATAT+GGG 0.480364 4_4:-29488675 None:intergenic
TGTTTATTGGTGGATACGAC+AGG 0.480869 4_4:+29491243 Msa0677110:CDS
TTTCAACTTATGTTTATTGG+TGG 0.482222 4_4:+29491233 Msa0677110:CDS
AGTAGATGAGTGGGCTCTAA+AGG 0.485139 4_4:+29492268 Msa0677110:CDS
AGAAGTTTGATTCTTCAAAA+GGG 0.485509 4_4:+29491203 Msa0677110:CDS
TTACTTGAATTTCAGACTGA+AGG 0.486903 4_4:+29490860 Msa0677110:intron
TTCAGACTGAAGGAAAGATT+AGG 0.487299 4_4:+29490870 Msa0677110:intron
GATATGGGGACCGGAGTTAG+TGG 0.491043 4_4:-29488660 None:intergenic
GCTCAAAGATATGATAATAT+GGG 0.492997 4_4:+29491026 Msa0677110:CDS
CTTATTCAAAACCGTTTGAA+GGG 0.494758 4_4:+29489735 Msa0677110:CDS
TGCCCGCTCATTTGCATGAG+AGG 0.499729 4_4:+29491697 Msa0677110:CDS
GTTTGTCGAGAGAAAGAGTA+AGG 0.499968 4_4:+29493492 Msa0677110:CDS
GATTCGGAACAATGGTTTCA+GGG 0.500906 4_4:+29489435 Msa0677110:CDS
TGATGAGGCGACTGTTTCCT+AGG 0.505152 4_4:+29493812 Msa0677110:three_prime_UTR
TGATTCTGCTGCCTTTCAGA+TGG 0.506025 4_4:-29489363 None:intergenic
CTTTCACATATCCCTTCAAA+CGG 0.507198 4_4:-29489746 None:intergenic
ATATCAATGTTTCAAAAGCA+TGG 0.511850 4_4:-29493576 None:intergenic
TATTTATTGTTGATATAGAG+TGG 0.513554 4_4:-29488812 None:intergenic
CACTCATCTACTCCATTCCA+TGG 0.516659 4_4:-29492257 None:intergenic
TCAGTCTATCAAGGCACTTA+AGG 0.517482 4_4:+29489383 Msa0677110:CDS
TTTGCTGCAGAAGTCGATGT+TGG 0.520203 4_4:+29489521 Msa0677110:CDS
ATTTATGCTCATCTAAAGAA+AGG 0.522664 4_4:-29489836 None:intergenic
CATGGGAAGACATTAGTAAA+CGG 0.524317 4_4:+29492933 Msa0677110:CDS
AGAGAAAGAGTAAGGCAAGT+TGG 0.524872 4_4:+29493500 Msa0677110:CDS
TTCTGCTGCCTTTCAGATGG+TGG 0.525613 4_4:-29489360 None:intergenic
GCTTGATTGGACTACTTCGT+GGG 0.528031 4_4:+29491176 Msa0677110:CDS
ACGCTATGATGAGTGTCTCC+TGG 0.532432 4_4:-29492082 None:intergenic
GAAGCATTCCCCTCTCTGAA+TGG 0.535106 4_4:+29492055 Msa0677110:CDS
ATTATCATATCTTTGAGCAA+TGG 0.535824 4_4:-29491021 None:intergenic
TGGATAAAGAATGTCTTACA+TGG 0.535990 4_4:+29492915 Msa0677110:CDS
AGTATAGTAGGAAAATTTGA+TGG 0.536272 4_4:+29489144 Msa0677110:five_prime_UTR
AACCTCTCATGCAAATGAGC+GGG 0.548183 4_4:-29491699 None:intergenic
TTTCTCTCTCTCGTTCCACA+AGG 0.551612 4_4:-29492871 None:intergenic
AGGAAGATCGCTGCTAAAAG+TGG 0.552288 4_4:+29489672 Msa0677110:CDS
TGCCGCAAGGAAGAGGGAGA+TGG 0.552494 4_4:+29493550 Msa0677110:CDS
ATTTGGTTAGGAGAAAGAAA+GGG 0.553867 4_4:-29488782 None:intergenic
GCAGCAGTTATTGGATTGAG+TGG 0.555881 4_4:+29489183 Msa0677110:CDS
CTCTTAATACAAGTCTTCCT+AGG 0.557454 4_4:-29493829 None:intergenic
CTATCTGAGAAAATTAAAGC+TGG 0.558689 4_4:+29489813 Msa0677110:CDS
GCAGCAGAATCAGTCTATCA+AGG 0.560868 4_4:+29489374 Msa0677110:CDS
AACAAAATGAGAACATCCCA+TGG 0.568183 4_4:+29492240 Msa0677110:CDS
AATGAGAACATCCCATGGAA+TGG 0.568965 4_4:+29492245 Msa0677110:CDS
GTTCTGCAGTGATGCAGCTG+AGG 0.571648 4_4:+29489694 Msa0677110:CDS
GATAAAATATAGAAAATGAA+AGG 0.572949 4_4:-29488760 None:intergenic
TGCATGCTGATTCGGAACAA+TGG 0.575895 4_4:+29489427 Msa0677110:CDS
GCAAGTTGGACTTGTTGCGT+TGG 0.576164 4_4:+29493514 Msa0677110:CDS
AAAACATGCCGCAAGGAAGA+GGG 0.578890 4_4:+29493544 Msa0677110:CDS
CTTGTTCTGGAGTGTCTGCA+AGG 0.578924 4_4:+29489628 Msa0677110:CDS
GTTGAAACAGATATGGGGAC+CGG 0.580658 4_4:-29488669 None:intergenic
TGAGGTTGAAAGTTCTGACA+TGG 0.586396 4_4:+29489476 Msa0677110:CDS
GACGAAAGAGGACGATATGA+GGG 0.586530 4_4:+29493681 Msa0677110:three_prime_UTR
TAAGCTATCCAGCTGCACAC+TGG 0.586853 4_4:-29488901 None:intergenic
AAAGCCTTAATATGTCTCAA+AGG 0.587061 4_4:+29491882 Msa0677110:CDS
CGAAGTTGCAACTTGATCAT+CGG 0.587519 4_4:-29490904 None:intergenic
AGTCGATGTTGGAAAAGCAA+TGG 0.589446 4_4:+29489532 Msa0677110:CDS
GAGTATAGACTCGAAGAGAG+AGG 0.594019 4_4:+29491741 Msa0677110:CDS
CGTTTGAAGGGATATGTGAA+AGG 0.601034 4_4:+29489747 Msa0677110:CDS
TGTATATATACAGAACAGAA+AGG 0.601909 4_4:+29493620 Msa0677110:three_prime_UTR
TTCCATCTCCCTCTTCCTTG+CGG 0.603171 4_4:-29493552 None:intergenic
ATCTAGTAATAGCAGCAGCA+AGG 0.605734 4_4:+29488869 Msa0677110:five_prime_UTR
CTTTCCATTCCAAAATGATG+AGG 0.606896 4_4:+29493797 Msa0677110:three_prime_UTR
AAAGAAGAATGACAATCAAG+AGG 0.607282 4_4:+29489652 Msa0677110:CDS
TTCTCTCTCTCGTTCCACAA+GGG 0.613960 4_4:-29492870 None:intergenic
CCTGGAAGACCATTCAGAGA+GGG 0.620461 4_4:-29492064 None:intergenic
AAGTCACAGATACCTTCCTC+CGG 0.622152 4_4:-29489608 None:intergenic
GCATCACACACCACTAACTC+CGG 0.623810 4_4:+29488650 Msa0677110:five_prime_UTR
ACTCATTAATGTGACCCTTG+TGG 0.624531 4_4:+29492856 Msa0677110:CDS
GCAGTTATTGGATTGAGTGG+AGG 0.629684 4_4:+29489186 Msa0677110:CDS
TCTTTATAATCACCTGAACA+AGG 0.630384 4_4:-29491064 None:intergenic
GTTGCAACTTGATCATCGGA+AGG 0.630637 4_4:-29490900 None:intergenic
ATGGAATGGAGTAGATGAGT+GGG 0.631890 4_4:+29492259 Msa0677110:CDS
ACTCATCTACTCCATTCCAT+GGG 0.634946 4_4:-29492256 None:intergenic
CAGCTGGATAGCTTATTCGG+TGG 0.639966 4_4:+29488909 Msa0677110:five_prime_UTR
CTGGAAGACCATTCAGAGAG+GGG 0.641914 4_4:-29492063 None:intergenic
TAACCTCTCATGCAAATGAG+CGG 0.653968 4_4:-29491700 None:intergenic
GGATAAAGAATGTCTTACAT+GGG 0.654591 4_4:+29492916 Msa0677110:CDS
GAAAGTCAGAAATGCTACTG+AGG 0.657628 4_4:+29491904 Msa0677110:CDS
AGAAACTAAAACATGCCGCA+AGG 0.670521 4_4:+29493537 Msa0677110:CDS
CATGGAATGGAGTAGATGAG+TGG 0.676637 4_4:+29492258 Msa0677110:CDS
TCCTGGAAGACCATTCAGAG+AGG 0.692795 4_4:-29492065 None:intergenic
AATTGGTTGAAACAGATATG+GGG 0.707906 4_4:-29488674 None:intergenic
TAGTAATAGCAGCAGCAAGG+TGG 0.723641 4_4:+29488872 Msa0677110:five_prime_UTR
CGAGTCTATACTCTGCATTG+CGG 0.732447 4_4:-29491731 None:intergenic
AGGAGGAAGTTGATACTGTG+TGG 0.743332 4_4:-29489286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTAAAGAAACTATTTT+AGG - chr4_4:29491369-29491388 None:intergenic 10.0%
!!! TTTTGTTTTATAAAAACAAT+CGG + chr4_4:29492532-29492551 Msa0677110:intron 10.0%
!!! TTATATCAACATTATTATTT+TGG - chr4_4:29492738-29492757 None:intergenic 10.0%
!! AAAATGAATAGATAAAGATA+TGG - chr4_4:29488713-29488732 None:intergenic 15.0%
!! GATAAAATATAGAAAATGAA+AGG - chr4_4:29488763-29488782 None:intergenic 15.0%
!!! AAAATTTGATGGTATAATAA+TGG + chr4_4:29489155-29489174 Msa0677110:exon 15.0%
!! TTTCTATAATATCTGAATAA+TGG - chr4_4:29489236-29489255 None:intergenic 15.0%
!! TTTATCATTATTGTTATCAT+AGG + chr4_4:29490117-29490136 Msa0677110:intron 15.0%
!!! TAGTTTTCTTTTTTAGTTTA+TGG + chr4_4:29490241-29490260 Msa0677110:intron 15.0%
!! ATTATAAAATAGAAGCTATA+TGG - chr4_4:29491411-29491430 None:intergenic 15.0%
!! AAAACAAAAACAAGAAAAAA+TGG - chr4_4:29491529-29491548 None:intergenic 15.0%
!! AAAATTGATGTATTAGAAAT+GGG + chr4_4:29492475-29492494 Msa0677110:intron 15.0%
!! AGTATGTTTAATATAATTTG+TGG - chr4_4:29492512-29492531 None:intergenic 15.0%
!!! TTTGTTTTATAAAAACAATC+GGG + chr4_4:29492533-29492552 Msa0677110:intron 15.0%
!! ACAAATGGAATTAATATTTA+TGG - chr4_4:29492810-29492829 None:intergenic 15.0%
!!! TATTGTCATATAATTTTACT+TGG - chr4_4:29493006-29493025 None:intergenic 15.0%
!!! TGTTAGACAATTTTTTAATT+TGG + chr4_4:29493073-29493092 Msa0677110:intron 15.0%
!!! AATTTAGTATTTGAAATTCT+AGG - chr4_4:29493271-29493290 None:intergenic 15.0%
!! TAGAATTTCAAATACTAAAT+TGG + chr4_4:29493270-29493289 Msa0677110:intron 15.0%
!! TATTTATTGTTGATATAGAG+TGG - chr4_4:29488815-29488834 None:intergenic 20.0%
!! AAAGCTAAAAACAAAGTAAA+TGG - chr4_4:29489013-29489032 None:intergenic 20.0%
!! TACAATGAAATAATTGCATT+AGG + chr4_4:29490609-29490628 Msa0677110:intron 20.0%
!! ATAAGATACATAAAGTAACA+TGG - chr4_4:29490736-29490755 None:intergenic 20.0%
!! AGTCAATTTACAAAATTATC+TGG - chr4_4:29490778-29490797 None:intergenic 20.0%
!! AGATTTCAACTTATGTTTAT+TGG + chr4_4:29491230-29491249 Msa0677110:CDS 20.0%
!!! GTTTTTGTTTTCATTAGTTT+CGG + chr4_4:29491538-29491557 Msa0677110:intron 20.0%
!!! ATGAGACAATTGATATTTTT+GGG - chr4_4:29492184-29492203 None:intergenic 20.0%
!!! AATGAGACAATTGATATTTT+TGG - chr4_4:29492185-29492204 None:intergenic 20.0%
!!! AATTATGTGCGTAAATTTTA+TGG + chr4_4:29492415-29492434 Msa0677110:intron 20.0%
!! CAAAATTGATGTATTAGAAA+TGG + chr4_4:29492474-29492493 Msa0677110:intron 20.0%
!!! TCAGCATTTTTCATATTATT+TGG - chr4_4:29492682-29492701 None:intergenic 20.0%
!! TTCCATTTGTAAATATTTAC+AGG + chr4_4:29492820-29492839 Msa0677110:intron 20.0%
!! TTCCTGTAAATATTTACAAA+TGG - chr4_4:29492825-29492844 None:intergenic 20.0%
!! AACAATTTCATGGATAAAAT+TGG - chr4_4:29493051-29493070 None:intergenic 20.0%
!! TTCAAAATGATTCATGAAAT+TGG + chr4_4:29493114-29493133 Msa0677110:intron 20.0%
!! TTACGTAAAAATTTATGCTA+TGG - chr4_4:29493324-29493343 None:intergenic 20.0%
!!! TGTTTTATCAAAAATGTTGA+AGG + chr4_4:29493754-29493773 Msa0677110:three_prime_UTR 20.0%
!! AACTAATAATGAGAAGAAAA+AGG - chr4_4:29493988-29494007 None:intergenic 20.0%
! TAATTGGTTGAAACAGATAT+GGG - chr4_4:29488678-29488697 None:intergenic 25.0%
! TATAGAGTGGAAGTTAAATT+TGG - chr4_4:29488802-29488821 None:intergenic 25.0%
!!! TGCATAGTTGCAATTTTTTA+AGG + chr4_4:29488959-29488978 Msa0677110:five_prime_UTR 25.0%
! ATGGTATATGATATTGTTGT+GGG - chr4_4:29488994-29489013 None:intergenic 25.0%
! AATGGTATATGATATTGTTG+TGG - chr4_4:29488995-29489014 None:intergenic 25.0%
!! CAGTTTATTGATAGTATAGT+AGG + chr4_4:29489132-29489151 Msa0677110:five_prime_UTR 25.0%
! AGTATAGTAGGAAAATTTGA+TGG + chr4_4:29489144-29489163 Msa0677110:five_prime_UTR 25.0%
! ATACAATTCTAATGACTTTG+AGG + chr4_4:29489458-29489477 Msa0677110:CDS 25.0%
! ATTTATGCTCATCTAAAGAA+AGG - chr4_4:29489839-29489858 None:intergenic 25.0%
! CTTCTACAATTACACAATTA+TGG - chr4_4:29489952-29489971 None:intergenic 25.0%
! ATTGTTATCATAGGTAAAGA+AGG + chr4_4:29490126-29490145 Msa0677110:intron 25.0%
! TTGTTATCATAGGTAAAGAA+GGG + chr4_4:29490127-29490146 Msa0677110:intron 25.0%
! TTCAGTGTAATTACAAATGT+CGG + chr4_4:29490499-29490518 Msa0677110:intron 25.0%
! TATGTATCTTATATCGTTTG+AGG + chr4_4:29490744-29490763 Msa0677110:intron 25.0%
! ATGTATCTTATATCGTTTGA+GGG + chr4_4:29490745-29490764 Msa0677110:intron 25.0%
! CAATTTACAAAATTATCTGG+TGG - chr4_4:29490775-29490794 None:intergenic 25.0%
!!! TAAATTGACTTCTTTTCTTG+TGG + chr4_4:29490788-29490807 Msa0677110:intron 25.0%
! ATTATCATATCTTTGAGCAA+TGG - chr4_4:29491024-29491043 None:intergenic 25.0%
! TGCTCAAAGATATGATAATA+TGG + chr4_4:29491025-29491044 Msa0677110:CDS 25.0%
! GCTCAAAGATATGATAATAT+GGG + chr4_4:29491026-29491045 Msa0677110:CDS 25.0%
! AGAAGTTTGATTCTTCAAAA+GGG + chr4_4:29491203-29491222 Msa0677110:CDS 25.0%
! TTTCAACTTATGTTTATTGG+TGG + chr4_4:29491233-29491252 Msa0677110:CDS 25.0%
! AATGTTTAAAAGAACACTAG+TGG - chr4_4:29491283-29491302 None:intergenic 25.0%
! CTGATTTATTGCAGAAATTA+TGG - chr4_4:29491456-29491475 None:intergenic 25.0%
! TGCAATTCTCTACAAAATAA+GGG - chr4_4:29491861-29491880 None:intergenic 25.0%
! TTGCAATTCTCTACAAAATA+AGG - chr4_4:29491862-29491881 None:intergenic 25.0%
! GATATTACATTAAGTGTATG+TGG - chr4_4:29491957-29491976 None:intergenic 25.0%
! TTTACGCACATAATTAAAGA+AGG - chr4_4:29492410-29492429 None:intergenic 25.0%
! ATAAAGTTCAGCTATGTATT+AGG - chr4_4:29492559-29492578 None:intergenic 25.0%
! TAATACATAGCTGAACTTTA+TGG + chr4_4:29492558-29492577 Msa0677110:intron 25.0%
! TGCATATAATCAATATCACT+TGG + chr4_4:29492591-29492610 Msa0677110:intron 25.0%
! GAAATTGTTCGTCTTTATTA+TGG + chr4_4:29492890-29492909 Msa0677110:CDS 25.0%
! AAAGAAGTAACAAAATGTCA+CGG - chr4_4:29492968-29492987 None:intergenic 25.0%
!! TCATATAATTTTACTTGGCA+AGG - chr4_4:29493001-29493020 None:intergenic 25.0%
! ATGACAATACATCATCTTAT+TGG + chr4_4:29493017-29493036 Msa0677110:intron 25.0%
! TGACAATACATCATCTTATT+GGG + chr4_4:29493018-29493037 Msa0677110:intron 25.0%
!! TTGGAAATTTTCTTTTACTC+AGG + chr4_4:29493133-29493152 Msa0677110:intron 25.0%
! GTTTCTGTAAGATAATATCA+AGG - chr4_4:29493171-29493190 None:intergenic 25.0%
! ATATCAATGTTTCAAAAGCA+TGG - chr4_4:29493579-29493598 None:intergenic 25.0%
!!! CTTTTGAAACATTGATATGA+TGG + chr4_4:29493581-29493600 Msa0677110:exon 25.0%
! TGTATATATACAGAACAGAA+AGG + chr4_4:29493620-29493639 Msa0677110:three_prime_UTR 25.0%
!! TCCAAAAGACAATATTTTCA+GGG - chr4_4:29493727-29493746 None:intergenic 25.0%
AATTGGTTGAAACAGATATG+GGG - chr4_4:29488677-29488696 None:intergenic 30.0%
GTAATTGGTTGAAACAGATA+TGG - chr4_4:29488679-29488698 None:intergenic 30.0%
ATGGAAAGAAGAGATGTAAT+TGG - chr4_4:29488694-29488713 None:intergenic 30.0%
ATTTGGTTAGGAGAAAGAAA+GGG - chr4_4:29488785-29488804 None:intergenic 30.0%
AATTTGGTTAGGAGAAAGAA+AGG - chr4_4:29488786-29488805 None:intergenic 30.0%
AGTGGAAGTTAAATTTGGTT+AGG - chr4_4:29488797-29488816 None:intergenic 30.0%
!! CTTTTTGTTTATCAGAGCTT+GGG + chr4_4:29489087-29489106 Msa0677110:intron 30.0%
!! ACTATTACAGATTTTGAAGG+AGG - chr4_4:29489306-29489325 None:intergenic 30.0%
! GCAACTATTACAGATTTTGA+AGG - chr4_4:29489309-29489328 None:intergenic 30.0%
! TTCTGACATGGATTATTCAT+TGG + chr4_4:29489488-29489507 Msa0677110:CDS 30.0%
AATGGAGTCTTTCATTTGAA+AGG + chr4_4:29489550-29489569 Msa0677110:CDS 30.0%
AAAGAAGAATGACAATCAAG+AGG + chr4_4:29489652-29489671 Msa0677110:CDS 30.0%
!!! AAACGGTTTTGAATAAGTTC+GGG - chr4_4:29489732-29489751 None:intergenic 30.0%
!!! CAAACGGTTTTGAATAAGTT+CGG - chr4_4:29489733-29489752 None:intergenic 30.0%
ACTTATTCAAAACCGTTTGA+AGG + chr4_4:29489734-29489753 Msa0677110:CDS 30.0%
CTTATTCAAAACCGTTTGAA+GGG + chr4_4:29489735-29489754 Msa0677110:CDS 30.0%
CTATCTGAGAAAATTAAAGC+TGG + chr4_4:29489813-29489832 Msa0677110:CDS 30.0%
CTTTAGATGAGCATAAATCT+AGG + chr4_4:29489841-29489860 Msa0677110:CDS 30.0%
ATTATGAAAACCAACAATGC+AGG - chr4_4:29489873-29489892 None:intergenic 30.0%
GCATTAAGTTAAGCAATCTT+TGG + chr4_4:29490006-29490025 Msa0677110:intron 30.0%
ATTAATCCTACAACTGAATG+TGG + chr4_4:29490087-29490106 Msa0677110:intron 30.0%
! AAGAAGGGTTCTATCATTTT+CGG + chr4_4:29490142-29490161 Msa0677110:intron 30.0%
! AGTGAACTGAACATTTTTGT+AGG + chr4_4:29490271-29490290 Msa0677110:intron 30.0%
ATCAAATATTTGCCTCTCAT+TGG + chr4_4:29490345-29490364 Msa0677110:intron 30.0%
GCAATATATTGTTGGAATGA+AGG - chr4_4:29490377-29490396 None:intergenic 30.0%
TCATTCCAACAATATATTGC+TGG + chr4_4:29490377-29490396 Msa0677110:intron 30.0%
AATTGCATTAGGATGTACTA+TGG + chr4_4:29490620-29490639 Msa0677110:intron 30.0%
ATTGCATTAGGATGTACTAT+GGG + chr4_4:29490621-29490640 Msa0677110:intron 30.0%
TTACTTGAATTTCAGACTGA+AGG + chr4_4:29490860-29490879 Msa0677110:intron 30.0%
TCTTTATAATCACCTGAACA+AGG - chr4_4:29491067-29491086 None:intergenic 30.0%
GAAGATATGAGGTTAAAACA+TGG - chr4_4:29491093-29491112 None:intergenic 30.0%
AACAAAGCTAAGAAGATATG+AGG - chr4_4:29491104-29491123 None:intergenic 30.0%
!!! ACTCACATTGCTTTTTCTAT+AGG + chr4_4:29491150-29491169 Msa0677110:intron 30.0%
!!! CTCACATTGCTTTTTCTATA+GGG + chr4_4:29491151-29491170 Msa0677110:intron 30.0%
GAGAAGTTTGATTCTTCAAA+AGG + chr4_4:29491202-29491221 Msa0677110:CDS 30.0%
AATTGTCGTAAATTCACCAA+TGG + chr4_4:29491303-29491322 Msa0677110:intron 30.0%
TCAGCACAATTATTTAGTGA+CGG - chr4_4:29491631-29491650 None:intergenic 30.0%
! ACTAAATAATTGTGCTGACA+GGG + chr4_4:29491633-29491652 Msa0677110:intron 30.0%
AAAGCCTTAATATGTCTCAA+AGG + chr4_4:29491882-29491901 Msa0677110:CDS 30.0%
!! CTTTCCTTTGAGACATATTA+AGG - chr4_4:29491889-29491908 None:intergenic 30.0%
! CAAAGTTTTCTCCTTAGATA+GGG + chr4_4:29492033-29492052 Msa0677110:CDS 30.0%
!! TTTGATATAAAGAGCATTGC+AGG - chr4_4:29492387-29492406 None:intergenic 30.0%
ATATTATTTGGCACTCTCAT+CGG - chr4_4:29492670-29492689 None:intergenic 30.0%
AAATGCTGAATGAGCAAAAA+TGG + chr4_4:29492693-29492712 Msa0677110:intron 30.0%
TGTTCGTCTTTATTATGGAT+TGG + chr4_4:29492895-29492914 Msa0677110:CDS 30.0%
TGGATAAAGAATGTCTTACA+TGG + chr4_4:29492915-29492934 Msa0677110:CDS 30.0%
GGATAAAGAATGTCTTACAT+GGG + chr4_4:29492916-29492935 Msa0677110:CDS 30.0%
GTCTAACACTAACAATTTCA+TGG - chr4_4:29493061-29493080 None:intergenic 30.0%
GATAATATCAAGGACTAAAC+TGG - chr4_4:29493161-29493180 None:intergenic 30.0%
! TACTAAATTGGTGATTCACT+AGG + chr4_4:29493282-29493301 Msa0677110:intron 30.0%
TATCAGGAAGTCAAATTTCT+AGG - chr4_4:29493655-29493674 None:intergenic 30.0%
!!! CTCTTTCGTCTATTTTTATC+AGG - chr4_4:29493671-29493690 None:intergenic 30.0%
CTGATAAAAATAGACGAAAG+AGG + chr4_4:29493669-29493688 Msa0677110:three_prime_UTR 30.0%
!! CAAAAGACAATATTTTCAGG+GGG - chr4_4:29493725-29493744 None:intergenic 30.0%
! CCAAAAGACAATATTTTCAG+GGG - chr4_4:29493726-29493745 None:intergenic 30.0%
! CTCCAAAAGACAATATTTTC+AGG - chr4_4:29493728-29493747 None:intergenic 30.0%
! TCTACTAAAGTATCACTTTG+AGG + chr4_4:29493920-29493939 Msa0677110:three_prime_UTR 30.0%
GTATATGATATTGTTGTGGG+TGG - chr4_4:29488991-29489010 None:intergenic 35.0%
!! GCTTTTTGTTTATCAGAGCT+TGG + chr4_4:29489086-29489105 Msa0677110:intron 35.0%
! TCTCATGCATCATGTGATTT+TGG + chr4_4:29489261-29489280 Msa0677110:CDS 35.0%
ATTCGAGGAGAGAAAAAATC+CGG + chr4_4:29489589-29489608 Msa0677110:CDS 35.0%
CTTTCACATATCCCTTCAAA+CGG - chr4_4:29489749-29489768 None:intergenic 35.0%
CTAATTCCACATTCAGTTGT+AGG - chr4_4:29490096-29490115 None:intergenic 35.0%
! GAACTGAACATTTTTGTAGG+TGG + chr4_4:29490274-29490293 Msa0677110:intron 35.0%
CATAGCCAGCAATATATTGT+TGG - chr4_4:29490385-29490404 None:intergenic 35.0%
TTGCATTAGGATGTACTATG+GGG + chr4_4:29490622-29490641 Msa0677110:intron 35.0%
TTCAGACTGAAGGAAAGATT+AGG + chr4_4:29490870-29490889 Msa0677110:intron 35.0%
!! TGATAATATGGGTGCTGAAA+TGG + chr4_4:29491037-29491056 Msa0677110:CDS 35.0%
!! GATAATATGGGTGCTGAAAT+GGG + chr4_4:29491038-29491057 Msa0677110:CDS 35.0%
TAGAAAAAGCAATGTGAGTG+CGG - chr4_4:29491149-29491168 None:intergenic 35.0%
!!! ACATTGCTTTTTCTATAGGG+TGG + chr4_4:29491154-29491173 Msa0677110:intron 35.0%
TAAATTCACCAATGGATGCA+AGG + chr4_4:29491311-29491330 Msa0677110:intron 35.0%
GCAGAAATTATGGCTCATAA+TGG - chr4_4:29491446-29491465 None:intergenic 35.0%
!!! TGTTTTGAGAAATCTGTGCA+AGG + chr4_4:29491576-29491595 Msa0677110:intron 35.0%
!!! GTTTTGAGAAATCTGTGCAA+GGG + chr4_4:29491577-29491596 Msa0677110:intron 35.0%
! CACTAAATAATTGTGCTGAC+AGG + chr4_4:29491632-29491651 Msa0677110:intron 35.0%
! AGCTGACTTACATCAATAGT+TGG - chr4_4:29491774-29491793 None:intergenic 35.0%
CGTGTGTATATTCATATTGC+AGG + chr4_4:29492003-29492022 Msa0677110:intron 35.0%
! GCAAAGTTTTCTCCTTAGAT+AGG + chr4_4:29492032-29492051 Msa0677110:CDS 35.0%
! CTTTTTCTACAAGTCCATCA+AGG + chr4_4:29492120-29492139 Msa0677110:intron 35.0%
AATCCAATGATCTTCCTTGA+TGG - chr4_4:29492137-29492156 None:intergenic 35.0%
AACAAAATGAGAACATCCCA+TGG + chr4_4:29492240-29492259 Msa0677110:CDS 35.0%
GTAGAGTATGTTATGACATC+AGG + chr4_4:29492437-29492456 Msa0677110:intron 35.0%
CATGGGAAGACATTAGTAAA+CGG + chr4_4:29492933-29492952 Msa0677110:CDS 35.0%
TGCTATGGATGAATCAGATA+AGG - chr4_4:29493309-29493328 None:intergenic 35.0%
TGTTCAGAACGTACATTTGA+TGG + chr4_4:29493350-29493369 Msa0677110:intron 35.0%
! TTGTGTTATTCCTACAGGAT+AGG + chr4_4:29493470-29493489 Msa0677110:intron 35.0%
! CCCCTGAAAATATTGTCTTT+TGG + chr4_4:29493723-29493742 Msa0677110:three_prime_UTR 35.0%
CTTTCCATTCCAAAATGATG+AGG + chr4_4:29493797-29493816 Msa0677110:three_prime_UTR 35.0%
CTCTTAATACAAGTCTTCCT+AGG - chr4_4:29493832-29493851 None:intergenic 35.0%
CTAGGAAGACTTGTATTAAG+AGG + chr4_4:29493830-29493849 Msa0677110:three_prime_UTR 35.0%
!! AAGTATCACTTTGAGGTGTT+AGG + chr4_4:29493927-29493946 Msa0677110:three_prime_UTR 35.0%
ATCTAGTAATAGCAGCAGCA+AGG + chr4_4:29488869-29488888 Msa0677110:five_prime_UTR 40.0%
! GGGAAGTTTCTGAAAGCAAT+AGG + chr4_4:29489107-29489126 Msa0677110:five_prime_UTR 40.0%
!! CTTTCAGATGGTGGAAAAGT+TGG - chr4_4:29489354-29489373 None:intergenic 40.0%
! CAACTTTTCCACCATCTGAA+AGG + chr4_4:29489352-29489371 Msa0677110:CDS 40.0%
! TCAGTCTATCAAGGCACTTA+AGG + chr4_4:29489383-29489402 Msa0677110:CDS 40.0%
! TGATTCGGAACAATGGTTTC+AGG + chr4_4:29489434-29489453 Msa0677110:CDS 40.0%
GATTCGGAACAATGGTTTCA+GGG + chr4_4:29489435-29489454 Msa0677110:CDS 40.0%
! TGAGGTTGAAAGTTCTGACA+TGG + chr4_4:29489476-29489495 Msa0677110:CDS 40.0%
AGTCGATGTTGGAAAAGCAA+TGG + chr4_4:29489532-29489551 Msa0677110:CDS 40.0%
!! AAGTGTTGAGTGAGAATTCG+AGG + chr4_4:29489574-29489593 Msa0677110:CDS 40.0%
!! AAGGTATCTGTGACTTGTTC+TGG + chr4_4:29489615-29489634 Msa0677110:CDS 40.0%
CGTTTGAAGGGATATGTGAA+AGG + chr4_4:29489747-29489766 Msa0677110:CDS 40.0%
TAGGTAAATGCCTGCATTGT+TGG + chr4_4:29489860-29489879 Msa0677110:intron 40.0%
!! GTCTTCAACATTGACTTTCG+AGG - chr4_4:29490220-29490239 None:intergenic 40.0%
! ACATTTTTGTAGGTGGAGCA+TGG + chr4_4:29490281-29490300 Msa0677110:intron 40.0%
! CATTTTTGTAGGTGGAGCAT+GGG + chr4_4:29490282-29490301 Msa0677110:intron 40.0%
TGAAGGCTAAAACCAATGAG+AGG - chr4_4:29490360-29490379 None:intergenic 40.0%
! ATATTGCTGGCTATGAAGCA+CGG + chr4_4:29490390-29490409 Msa0677110:intron 40.0%
CGAAGTTGCAACTTGATCAT+CGG - chr4_4:29490907-29490926 None:intergenic 40.0%
TTTCTATAGGGTGGCTTGAT+TGG + chr4_4:29491163-29491182 Msa0677110:intron 40.0%
! TGTTTATTGGTGGATACGAC+AGG + chr4_4:29491243-29491262 Msa0677110:CDS 40.0%
GCACAATTATTTAGTGACGG+TGG - chr4_4:29491628-29491647 None:intergenic 40.0%
TAACCTCTCATGCAAATGAG+CGG - chr4_4:29491703-29491722 None:intergenic 40.0%
GAAAGTCAGAAATGCTACTG+AGG + chr4_4:29491904-29491923 Msa0677110:CDS 40.0%
AGTCCATCAAGGAAGATCAT+TGG + chr4_4:29492131-29492150 Msa0677110:intron 40.0%
AATGAGAACATCCCATGGAA+TGG + chr4_4:29492245-29492264 Msa0677110:CDS 40.0%
ACTCATCTACTCCATTCCAT+GGG - chr4_4:29492259-29492278 None:intergenic 40.0%
ATGGAATGGAGTAGATGAGT+GGG + chr4_4:29492259-29492278 Msa0677110:CDS 40.0%
!! AAAGAGCATTGCAGGATAGA+AGG - chr4_4:29492379-29492398 None:intergenic 40.0%
TTGATTCCTGAAACCATGAG+AGG + chr4_4:29492638-29492657 Msa0677110:intron 40.0%
AAGAATCCTCTCATGGTTTC+AGG - chr4_4:29492647-29492666 None:intergenic 40.0%
ACTCATTAATGTGACCCTTG+TGG + chr4_4:29492856-29492875 Msa0677110:CDS 40.0%
! GACTCTTGTGTTATTCCTAC+AGG + chr4_4:29493465-29493484 Msa0677110:intron 40.0%
GTTTGTCGAGAGAAAGAGTA+AGG + chr4_4:29493492-29493511 Msa0677110:CDS 40.0%
AGAGAAAGAGTAAGGCAAGT+TGG + chr4_4:29493500-29493519 Msa0677110:CDS 40.0%
AGAAACTAAAACATGCCGCA+AGG + chr4_4:29493537-29493556 Msa0677110:CDS 40.0%
! AAACAGTCGCCTCATCATTT+TGG - chr4_4:29493809-29493828 None:intergenic 40.0%
GTTGAAACAGATATGGGGAC+CGG - chr4_4:29488672-29488691 None:intergenic 45.0%
TAGTAATAGCAGCAGCAAGG+TGG + chr4_4:29488872-29488891 Msa0677110:five_prime_UTR 45.0%
GTGCAGCTGGATAGCTTATT+CGG + chr4_4:29488906-29488925 Msa0677110:five_prime_UTR 45.0%
ATGGCTACTGCAGCAGTTAT+TGG + chr4_4:29489174-29489193 Msa0677110:CDS 45.0%
GCAGCAGTTATTGGATTGAG+TGG + chr4_4:29489183-29489202 Msa0677110:CDS 45.0%
GCAGTTATTGGATTGAGTGG+AGG + chr4_4:29489186-29489205 Msa0677110:CDS 45.0%
!! AGGAGGAAGTTGATACTGTG+TGG - chr4_4:29489289-29489308 None:intergenic 45.0%
TGATTCTGCTGCCTTTCAGA+TGG - chr4_4:29489366-29489385 None:intergenic 45.0%
GCAGCAGAATCAGTCTATCA+AGG + chr4_4:29489374-29489393 Msa0677110:CDS 45.0%
!! TGCATGCTGATTCGGAACAA+TGG + chr4_4:29489427-29489446 Msa0677110:CDS 45.0%
TTTGCTGCAGAAGTCGATGT+TGG + chr4_4:29489521-29489540 Msa0677110:CDS 45.0%
GAGAGAAAAAATCCGGAGGA+AGG + chr4_4:29489596-29489615 Msa0677110:CDS 45.0%
AAGTCACAGATACCTTCCTC+CGG - chr4_4:29489611-29489630 None:intergenic 45.0%
AGGAAGATCGCTGCTAAAAG+TGG + chr4_4:29489672-29489691 Msa0677110:CDS 45.0%
GTCCTTGCTTCATAGATTGC+TGG + chr4_4:29490583-29490602 Msa0677110:intron 45.0%
CACCAGCAATCTATGAAGCA+AGG - chr4_4:29490588-29490607 None:intergenic 45.0%
CTTGCTTCATAGATTGCTGG+TGG + chr4_4:29490586-29490605 Msa0677110:intron 45.0%
GTTGCAACTTGATCATCGGA+AGG - chr4_4:29490903-29490922 None:intergenic 45.0%
TGAAATGGGTGACCTTGTTC+AGG + chr4_4:29491052-29491071 Msa0677110:CDS 45.0%
GCTTGATTGGACTACTTCGT+GGG + chr4_4:29491176-29491195 Msa0677110:CDS 45.0%
TCTACTGTCCTTGCATCCAT+TGG - chr4_4:29491322-29491341 None:intergenic 45.0%
ATGGATGCAAGGACAGTAGA+TGG + chr4_4:29491322-29491341 Msa0677110:intron 45.0%
TGGATGCAAGGACAGTAGAT+GGG + chr4_4:29491323-29491342 Msa0677110:intron 45.0%
AACCTCTCATGCAAATGAGC+GGG - chr4_4:29491702-29491721 None:intergenic 45.0%
CGAGTCTATACTCTGCATTG+CGG - chr4_4:29491734-29491753 None:intergenic 45.0%
GAGTATAGACTCGAAGAGAG+AGG + chr4_4:29491741-29491760 Msa0677110:CDS 45.0%
CACTCATCTACTCCATTCCA+TGG - chr4_4:29492260-29492279 None:intergenic 45.0%
CATGGAATGGAGTAGATGAG+TGG + chr4_4:29492258-29492277 Msa0677110:CDS 45.0%
! AGTAGATGAGTGGGCTCTAA+AGG + chr4_4:29492268-29492287 Msa0677110:CDS 45.0%
! TCACTTGGTGAGAGAAGACT+TGG + chr4_4:29492606-29492625 Msa0677110:intron 45.0%
TCATCGGAAGAATCCTCTCA+TGG - chr4_4:29492654-29492673 None:intergenic 45.0%
TTCTCTCTCTCGTTCCACAA+GGG - chr4_4:29492873-29492892 None:intergenic 45.0%
TTTCTCTCTCTCGTTCCACA+AGG - chr4_4:29492874-29492893 None:intergenic 45.0%
TCTCGACAAACCTATCCTGT+AGG - chr4_4:29493483-29493502 None:intergenic 45.0%
TAAAACATGCCGCAAGGAAG+AGG + chr4_4:29493543-29493562 Msa0677110:CDS 45.0%
AAAACATGCCGCAAGGAAGA+GGG + chr4_4:29493544-29493563 Msa0677110:CDS 45.0%
AGACGAAAGAGGACGATATG+AGG + chr4_4:29493680-29493699 Msa0677110:three_prime_UTR 45.0%
GACGAAAGAGGACGATATGA+GGG + chr4_4:29493681-29493700 Msa0677110:three_prime_UTR 45.0%
!! GTCGCCTCATCATTTTGGAA+TGG - chr4_4:29493804-29493823 None:intergenic 45.0%
!! AAAATTAAATTAAATAGAAA+AGG - chr4_4:29488739-29488758 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+AGG + chr4_4:29490439-29490458 Msa0677110:intron 5.0%
GCATCACACACCACTAACTC+CGG + chr4_4:29488650-29488669 Msa0677110:five_prime_UTR 50.0%
!!! GGTTTTTTCCAGTGTGCAGC+TGG + chr4_4:29488893-29488912 Msa0677110:five_prime_UTR 50.0%
TAAGCTATCCAGCTGCACAC+TGG - chr4_4:29488904-29488923 None:intergenic 50.0%
CAGCTGGATAGCTTATTCGG+TGG + chr4_4:29488909-29488928 Msa0677110:five_prime_UTR 50.0%
TTCTGCTGCCTTTCAGATGG+TGG - chr4_4:29489363-29489382 None:intergenic 50.0%
! TAGCGCAGTGCATGCTGATT+CGG + chr4_4:29489419-29489438 Msa0677110:CDS 50.0%
CGAGGAGAGAAAAAATCCGG+AGG + chr4_4:29489592-29489611 Msa0677110:CDS 50.0%
!! CTTGTTCTGGAGTGTCTGCA+AGG + chr4_4:29489628-29489647 Msa0677110:CDS 50.0%
CTGGCTATGAAGCACGGATA+CGG + chr4_4:29490396-29490415 Msa0677110:intron 50.0%
ATGAAGCACGGATACGGACA+CGG + chr4_4:29490402-29490421 Msa0677110:intron 50.0%
GCAAGGACACTCCTCGAATT+AGG - chr4_4:29490571-29490590 None:intergenic 50.0%
! TGCGGAGTGTTTGTCAACAG+AGG - chr4_4:29491131-29491150 None:intergenic 50.0%
GGCTTGATTGGACTACTTCG+TGG + chr4_4:29491175-29491194 Msa0677110:CDS 50.0%
! ATTGGTGGATACGACAGGTG+AGG + chr4_4:29491248-29491267 Msa0677110:intron 50.0%
GGGGAATGCTTCCCTATCTA+AGG - chr4_4:29492047-29492066 None:intergenic 50.0%
! GAAGCATTCCCCTCTCTGAA+TGG + chr4_4:29492055-29492074 Msa0677110:CDS 50.0%
CTGGAAGACCATTCAGAGAG+GGG - chr4_4:29492066-29492085 None:intergenic 50.0%
CCTGGAAGACCATTCAGAGA+GGG - chr4_4:29492067-29492086 None:intergenic 50.0%
TCCTGGAAGACCATTCAGAG+AGG - chr4_4:29492068-29492087 None:intergenic 50.0%
ACGCTATGATGAGTGTCTCC+TGG - chr4_4:29492085-29492104 None:intergenic 50.0%
!! GCAAGTTGGACTTGTTGCGT+TGG + chr4_4:29493514-29493533 Msa0677110:CDS 50.0%
TTCCATCTCCCTCTTCCTTG+CGG - chr4_4:29493555-29493574 None:intergenic 50.0%
TGATGAGGCGACTGTTTCCT+AGG + chr4_4:29493812-29493831 Msa0677110:three_prime_UTR 50.0%
GATATGGGGACCGGAGTTAG+TGG - chr4_4:29488663-29488682 None:intergenic 55.0%
GTTCTGCAGTGATGCAGCTG+AGG + chr4_4:29489694-29489713 Msa0677110:CDS 55.0%
ACACGACACGTGTTCGACAC+CGG + chr4_4:29490539-29490558 Msa0677110:intron 55.0%
TCCTCGAATTAGGCGTGTCC+CGG - chr4_4:29490561-29490580 None:intergenic 55.0%
TGCCCGCTCATTTGCATGAG+AGG + chr4_4:29491697-29491716 Msa0677110:CDS 55.0%
CCCTCTCTGAATGGTCTTCC+AGG + chr4_4:29492064-29492083 Msa0677110:CDS 55.0%
CACGACACGTGTTCGACACC+GGG + chr4_4:29490540-29490559 Msa0677110:intron 60.0%
ACCGGGACACGCCTAATTCG+AGG + chr4_4:29490557-29490576 Msa0677110:intron 60.0%
TGCCGCAAGGAAGAGGGAGA+TGG + chr4_4:29493550-29493569 Msa0677110:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 29488636 29494014 29488636 ID=Msa0677110;Name=Msa0677110
chr4_4 mRNA 29488636 29494014 29488636 ID=Msa0677110-mRNA-1;Parent=Msa0677110;Name=Msa0677110-mRNA-1;_AED=0.04;_eAED=0.04;_QI=417|1|1|1|0.88|0.8|10|419|508
chr4_4 exon 29488636 29488980 29488636 ID=Msa0677110-mRNA-1:exon:7558;Parent=Msa0677110-mRNA-1
chr4_4 exon 29489102 29489862 29489102 ID=Msa0677110-mRNA-1:exon:7559;Parent=Msa0677110-mRNA-1
chr4_4 exon 29490875 29491073 29490875 ID=Msa0677110-mRNA-1:exon:7560;Parent=Msa0677110-mRNA-1
chr4_4 exon 29491172 29491264 29491172 ID=Msa0677110-mRNA-1:exon:7561;Parent=Msa0677110-mRNA-1
chr4_4 exon 29491654 29491782 29491654 ID=Msa0677110-mRNA-1:exon:7562;Parent=Msa0677110-mRNA-1
chr4_4 exon 29491872 29491925 29491872 ID=Msa0677110-mRNA-1:exon:7563;Parent=Msa0677110-mRNA-1
chr4_4 exon 29492025 29492102 29492025 ID=Msa0677110-mRNA-1:exon:7564;Parent=Msa0677110-mRNA-1
chr4_4 exon 29492227 29492289 29492227 ID=Msa0677110-mRNA-1:exon:7565;Parent=Msa0677110-mRNA-1
chr4_4 exon 29492842 29492954 29492842 ID=Msa0677110-mRNA-1:exon:7566;Parent=Msa0677110-mRNA-1
chr4_4 exon 29493487 29494014 29493487 ID=Msa0677110-mRNA-1:exon:7567;Parent=Msa0677110-mRNA-1
chr4_4 five_prime_UTR 29488636 29488980 29488636 ID=Msa0677110-mRNA-1:five_prime_utr;Parent=Msa0677110-mRNA-1
chr4_4 five_prime_UTR 29489102 29489173 29489102 ID=Msa0677110-mRNA-1:five_prime_utr;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29489174 29489862 29489174 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29490875 29491073 29490875 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29491172 29491264 29491172 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29491654 29491782 29491654 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29491872 29491925 29491872 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29492025 29492102 29492025 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29492227 29492289 29492227 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29492842 29492954 29492842 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 CDS 29493487 29493595 29493487 ID=Msa0677110-mRNA-1:cds;Parent=Msa0677110-mRNA-1
chr4_4 three_prime_UTR 29493596 29494014 29493596 ID=Msa0677110-mRNA-1:three_prime_utr;Parent=Msa0677110-mRNA-1
Gene Sequence

>Msa0677110

ATGGCTACTGCAGCAGTTATTGGATTGAGTGGAGGAAAGAGACTATTGAGTTCATCTTACCATTATTCAGATATTATAGAAAAGTTTTCTCATGCATCATGTGATTTTGGTTCCACACAGTATCAACTTCCTCCTTCAAAATCTGTAATAGTTGCAAAGAAATCATCAAAATACACTCCAACTTTTCCACCATCTGAAAGGCAGCAGAATCAGTCTATCAAGGCACTTAAGGAACACGTTGTCGATAGCGCAGTGCATGCTGATTCGGAACAATGGTTTCAGGGATACAATTCTAATGACTTTGAGGTTGAAAGTTCTGACATGGATTATTCATTGGACGCGCTTCTTTTGCTGCAGAAGTCGATGTTGGAAAAGCAATGGAGTCTTTCATTTGAAAGGAAAGTGTTGAGTGAGAATTCGAGGAGAGAAAAAATCCGGAGGAAGGTATCTGTGACTTGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGACAATCAAGAGGAAGATCGCTGCTAAAAGTGGTTCTGCAGTGATGCAGCTGAGGTCTACAATCAATCCCGAACTTATTCAAAACCGTTTGAAGGGATATGTGAAAGGTGTCGTGAGTGACGAATTGCTCTCTCATGCTGAAGTTGTAAAGCTATCTGAGAAAATTAAAGCTGGCCTTTCTTTAGATGAGCATAAATCTAGACTGAAGGAAAGATTAGGAAGTGAACCTTCCGATGATCAAGTTGCAACTTCGTTGAAGATTTCTCGAGCTGAACTACGAGCTAAAATAATTGAGTGCTCTTTAGCAAGAGAAAAGTTAACTATGAGCAATGTTCGCTTAGTTTTGTCCATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGACAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACATTAAGATTGCCCGCTCATTTGCATGAGAGGTTATCTCTGATCCGCAATGCAGAGTATAGACTCGAAGAGAGAGGCATCACTCCAACTATTGATAGAATTGCAAAAAGCCTTAATATGTCTCAAAGGAAAGTCAGAAATGCTACTGAGGCTATAAGCAAAGTTTTCTCCTTAGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCATAGCTTTATTGCAGATAAACAAAATGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCTCTAAAGGAAGAAGTGAACAGACTCATTAATGTGACCCTTGTGGAACGAGAGAGAGAAATTGTTCGTCTTTATTATGGATTGGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCGTTGGAGAAACTAAAACATGCCGCAAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAACATTGA

Protein sequence

>Msa0677110

MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHASCDFGSTQYQLPPSKSVIVAKKSSKYTPTFPPSERQQNQSIKALKEHVVDSAVHADSEQWFQGYNSNDFEVESSDMDYSLDALLLLQKSMLEKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTIKRKIAAKSGSAVMQLRSTINPELIQNRLKGYVKGVVSDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRAELRAKIIECSLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAEYRLEERGITPTIDRIAKSLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNGVDEWALKEEVNRLINVTLVEREREIVRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH*