AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139280 MtrunA17_Chr1g0199101 96.170 470 16 2 1 469 71 539 0.0 928
Msa0139280 MtrunA17_Chr1g0163001 55.662 521 110 25 1 462 67 525 1.46e-150 439
Msa0139280 MtrunA17_Chr1g0162971 49.227 453 124 14 1 438 65 426 8.41e-116 347
Msa0139280 MtrunA17_Chr1g0210821 46.263 495 207 13 1 454 68 544 4.07e-114 347
Msa0139280 MtrunA17_Chr7g0263941 86.806 144 18 1 1 144 58 200 1.52e-94 291
Msa0139280 MtrunA17_Chr8g0342421 90.580 138 13 0 1 138 86 223 1.57e-94 295
Msa0139280 MtrunA17_Chr4g0040571 47.967 369 146 9 1 342 63 412 6.04e-94 293
Msa0139280 MtrunA17_Chr2g0330171 82.468 154 24 1 1 151 70 223 1.30e-93 291
Msa0139280 MtrunA17_Chr4g0029521 41.000 500 190 20 1 462 62 494 6.60e-93 290
Msa0139280 MtrunA17_Chr1g0181381 87.770 139 16 1 1 138 62 200 1.36e-91 287
Msa0139280 MtrunA17_Chr7g0268961 83.824 136 22 0 1 136 46 181 2.56e-89 281
Msa0139280 MtrunA17_Chr1g0191991 84.559 136 21 0 1 136 87 222 4.24e-89 281
Msa0139280 MtrunA17_Chr1g0151351 77.215 158 34 2 1 156 65 222 2.03e-88 277
Msa0139280 MtrunA17_Chr1g0185121 61.088 239 67 8 1 219 64 296 2.57e-88 276
Msa0139280 MtrunA17_Chr2g0326381 81.295 139 25 1 1 138 56 194 1.17e-83 263
Msa0139280 MtrunA17_Chr3g0141431 75.373 134 32 1 1 133 46 179 2.87e-77 247
Msa0139280 MtrunA17_Chr2g0324991 83.898 118 19 0 1 118 16 133 2.70e-73 228
Msa0139280 MtrunA17_Chr6g0479921 60.606 132 51 1 1 131 53 184 6.48e-58 198
Msa0139280 MtrunA17_Chr8g0375521 59.091 132 52 2 1 130 51 182 1.32e-55 191
Msa0139280 MtrunA17_Chr1g0200421 35.461 141 79 4 1 129 246 386 7.08e-22 98.2
Msa0139280 MtrunA17_Chr5g0422571 37.584 149 80 6 1 138 109 255 6.49e-21 92.8
Msa0139280 MtrunA17_Chr8g0352011 37.681 138 76 5 1 129 174 310 1.23e-19 90.1
Msa0139280 MtrunA17_Chr7g0258011 35.065 154 80 7 1 136 184 335 1.89e-19 89.4
Msa0139280 MtrunA17_Chr1g0198651 35.915 142 76 5 1 129 110 249 2.60e-19 88.2
Msa0139280 MtrunA17_Chr2g0320341 36.090 133 71 4 8 126 246 378 2.80e-19 89.7
Msa0139280 MtrunA17_Chr3g0123941 35.036 137 81 3 1 129 132 268 3.37e-19 88.6
Msa0139280 MtrunA17_Chr1g0173841 36.691 139 76 6 1 129 223 359 9.15e-19 88.2
Msa0139280 MtrunA17_Chr4g0053341 38.346 133 72 5 6 129 87 218 3.31e-18 83.6
Msa0139280 MtrunA17_Chr2g0328921 35.252 139 78 6 1 129 146 282 6.41e-18 84.3
Msa0139280 MtrunA17_Chr4g0026521 36.296 135 74 6 5 129 130 262 2.49e-17 82.4
Msa0139280 MtrunA17_Chr2g0321291 37.037 135 73 5 5 129 145 277 2.74e-17 82.4
Msa0139280 MtrunA17_Chr8g0382121 33.577 137 80 5 1 126 120 256 2.31e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139280 AT2G02080.6 49.886 439 175 15 1 428 1 405 7.87e-114 342
Msa0139280 AT2G02080.2 49.886 439 175 15 1 428 1 405 7.87e-114 342
Msa0139280 AT2G02080.1 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0139280 AT2G02080.4 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0139280 AT2G02080.5 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0139280 AT2G02080.3 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0139280 AT2G02070.2 84.568 162 19 2 1 162 76 231 2.48e-97 305
Msa0139280 AT2G02070.1 84.568 162 19 2 1 162 76 231 2.48e-97 305
Msa0139280 AT1G14580.1 90.141 142 13 1 1 142 77 217 3.49e-95 295
Msa0139280 AT1G14580.2 90.141 142 13 1 1 142 77 217 3.49e-95 295
Msa0139280 AT1G14580.3 90.141 142 13 1 1 142 91 231 4.49e-95 295
Msa0139280 AT3G50700.1 84.397 141 22 0 1 141 58 198 3.79e-92 287
Msa0139280 AT1G55110.3 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0139280 AT1G55110.1 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0139280 AT1G55110.2 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0139280 AT5G66730.1 85.106 141 21 0 1 141 56 196 2.69e-91 286
Msa0139280 AT3G45260.2 68.000 200 55 2 1 191 63 262 6.04e-91 284
Msa0139280 AT3G45260.1 68.000 200 55 2 1 191 63 262 6.04e-91 284
Msa0139280 AT1G03840.2 83.333 138 23 0 1 138 63 200 1.19e-88 280
Msa0139280 AT1G03840.1 83.333 138 23 0 1 138 65 202 1.48e-88 280
Msa0139280 AT5G03150.1 80.128 156 26 2 1 151 77 232 1.10e-87 277
Msa0139280 AT3G13810.3 86.331 139 18 1 1 138 81 219 1.16e-87 277
Msa0139280 AT3G13810.6 86.331 139 18 1 1 138 75 213 1.20e-87 277
Msa0139280 AT3G13810.5 86.331 139 18 1 1 138 89 227 1.27e-87 277
Msa0139280 AT3G13810.4 86.331 139 18 1 1 138 94 232 1.52e-87 277
Msa0139280 AT3G13810.1 86.331 139 18 1 1 138 94 232 1.52e-87 277
Msa0139280 AT3G13810.2 86.331 139 18 1 1 138 95 233 1.75e-87 277
Msa0139280 AT5G44160.2 84.058 138 22 0 1 138 22 159 2.69e-87 274
Msa0139280 AT5G44160.1 84.058 138 22 0 1 138 61 198 3.71e-87 275
Msa0139280 AT5G60470.1 76.667 150 32 2 1 147 59 208 9.83e-86 270
Msa0139280 AT4G02670.2 76.623 154 26 2 1 144 79 232 2.05e-85 268
Msa0139280 AT4G02670.1 76.623 154 26 2 1 144 77 230 2.22e-85 268
Msa0139280 AT5G60470.2 76.667 150 32 2 1 147 68 217 2.83e-85 270
Msa0139280 AT5G60470.3 76.667 150 32 2 1 147 64 213 3.45e-85 269
Msa0139280 AT1G25250.1 44.248 226 98 6 1 222 34 235 2.96e-59 199
Msa0139280 AT1G25250.3 44.248 226 98 6 1 222 57 258 4.52e-59 199
Msa0139280 AT1G68130.1 48.039 204 87 5 1 202 65 251 5.07e-59 200
Msa0139280 AT2G01940.1 62.687 134 48 2 1 132 68 201 1.38e-57 197
Msa0139280 AT2G01940.3 61.481 135 49 3 1 132 68 202 4.93e-54 187
Msa0139280 AT1G68130.2 46.703 182 78 5 23 202 1 165 5.77e-46 163
Msa0139280 AT1G25250.2 42.647 204 89 6 23 222 1 180 6.41e-46 162
Msa0139280 AT2G01940.2 62.500 112 40 2 23 132 1 112 3.76e-44 159
Msa0139280 AT1G34370.3 34.568 162 92 4 1 148 29 190 6.59e-21 93.2
Msa0139280 AT1G34370.2 34.568 162 92 4 1 148 239 400 8.46e-21 95.5
Msa0139280 AT1G34370.1 34.568 162 92 4 1 148 239 400 8.46e-21 95.5
Msa0139280 AT5G22890.1 32.168 143 83 3 1 129 212 354 1.57e-19 90.5
Msa0139280 AT1G13290.1 36.000 150 82 6 1 138 96 243 3.63e-19 88.2
Msa0139280 AT3G20880.1 34.783 138 80 5 1 129 251 387 1.46e-18 88.2
Msa0139280 AT1G51220.1 31.677 161 96 6 1 152 173 328 1.56e-18 87.0
Msa0139280 AT3G57670.1 35.971 139 77 6 1 129 212 348 3.17e-18 86.7
Msa0139280 AT1G08290.1 37.500 136 72 6 5 129 179 312 1.42e-17 84.3
Msa0139280 AT1G34790.1 38.806 134 70 6 6 129 145 276 2.07e-17 83.2

Find 106 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAATTTATTAATTTA+AGG 0.118224 1_3:-72920158 Msa0139280:three_prime_UTR
CCAACTTGATGATCACTTAA+AGG 0.176750 1_3:+72920694 None:intergenic
CTAAAAGAAGTGTAGTTTAT+TGG 0.180835 1_3:-72920050 Msa0139280:three_prime_UTR
ATTGCTTTCATTGCCAAATA+TGG 0.188179 1_3:+72920390 None:intergenic
TTTGCAATTGATGGGATATT+TGG 0.199708 1_3:+72921094 None:intergenic
GCACATTCAACTCAACATTT+TGG 0.223217 1_3:-72920211 Msa0139280:CDS
AGCTACTTGCTTGGTGTTCC+AGG 0.228645 1_3:+72923752 None:intergenic
GGACGTGTTAAAATAAAATA+AGG 0.252394 1_3:+72919991 None:intergenic
AACAACATCAATGTCACTTT+TGG 0.258147 1_3:-72920502 Msa0139280:CDS
AATGATGAAGAGTGATTTAA+AGG 0.258726 1_3:+72920973 None:intergenic
GGAAACACATCATCCATATT+TGG 0.261465 1_3:-72920403 Msa0139280:CDS
GATTGCAAAATATATAATTA+TGG 0.270959 1_3:-72923927 Msa0139280:five_prime_UTR
TGCTAGTGGATGATGTAATT+TGG 0.279783 1_3:+72921061 None:intergenic
TGGAAATAGAAGTTCAAGTA+TGG 0.282481 1_3:-72920482 Msa0139280:CDS
CTTTCTCCTTGGCTCTTTGT+TGG 0.310223 1_3:+72923067 None:intergenic
ATTGTAGTAATTTCTAGAAT+TGG 0.317396 1_3:+72920015 None:intergenic
TTAAATCACTCTTCATCATT+TGG 0.318218 1_3:-72920970 Msa0139280:CDS
TTAAGACACCCTAACCCTTT+TGG 0.323474 1_3:-72921162 Msa0139280:CDS
CACGACCCTTCAAGAGCTTT+AGG 0.336517 1_3:-72923011 Msa0139280:CDS
AGCAATCTTAATATGAGATT+TGG 0.345761 1_3:-72920373 Msa0139280:CDS
AATATGTTGCAATGAAGGTT+AGG 0.360874 1_3:-72920181 Msa0139280:exon
TTGCAAGAGGAAAGGATCTA+AGG 0.371590 1_3:+72924206 None:intergenic
GATGACAACAACGATCTTCA+TGG 0.372227 1_3:-72920448 Msa0139280:CDS
AACCATAAGGTTGAAAAGAT+TGG 0.377417 1_3:+72920780 None:intergenic
TTTGTTGCCATTAGAGTCTT+GGG 0.377742 1_3:+72923191 None:intergenic
ATACCTAGCTATTTATCTTC+TGG 0.377801 1_3:+72924265 None:intergenic
CAACTTGATGATCACTTAAA+GGG 0.378987 1_3:+72920695 None:intergenic
GTAGTAGTTGATTGAGGATG+AGG 0.387074 1_3:+72923833 None:intergenic
ACAAACCATCACATTAGTTT+AGG 0.387648 1_3:-72921117 Msa0139280:CDS
ATGATCATAAATCAGCTGAT+AGG 0.388164 1_3:-72920546 Msa0139280:CDS
ATTACTACCTTTGTTATTGT+TGG 0.391654 1_3:+72920570 None:intergenic
TGAGTACTCCCAAAAGGGTT+AGG 0.396876 1_3:+72921153 None:intergenic
CTCACAGATTGAGAGCAAAA+AGG 0.402598 1_3:+72924183 None:intergenic
ATTTGTTGCCATTAGAGTCT+TGG 0.406931 1_3:+72923190 None:intergenic
TTTGTATTGCCTTGAAGATC+AGG 0.407490 1_3:+72920823 None:intergenic
AGTGCTATCACTTCTGCATC+TGG 0.408067 1_3:+72923218 None:intergenic
TTGATAAACTCTATTGCAAA+TGG 0.417216 1_3:-72920424 Msa0139280:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1_3:-72921218 Msa0139280:CDS
TTTGACCATGTTGCATTGAA+TGG 0.424923 1_3:+72920665 None:intergenic
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_3:-72922911 Msa0139280:CDS
ATGCATCTTCCTGATCTTCA+AGG 0.433107 1_3:-72920832 Msa0139280:CDS
GCTCAAATATGTTGCAATGA+AGG 0.444416 1_3:-72920186 Msa0139280:exon
TTGAGATTGTTGTTCTTCAA+AGG 0.461712 1_3:+72920891 None:intergenic
CACAAATAAACCTTTCTCCT+TGG 0.464750 1_3:+72923056 None:intergenic
TTGTTCCTTGGTTACTACTC+AGG 0.465952 1_3:+72920740 None:intergenic
TATGTGAGGTTTGCAACAAA+GGG 0.467995 1_3:-72923160 Msa0139280:CDS
ACTATCTCCCAAGACTCTAA+TGG 0.473692 1_3:-72923198 Msa0139280:exon
TGATGGACGCATGTGGGCTC+AGG 0.479979 1_3:+72923032 None:intergenic
TGTAGTTTATTGGTAAAATG+AGG 0.480030 1_3:-72920040 Msa0139280:three_prime_UTR
GAAGAGGACACAATCTTCCT+TGG 0.488329 1_3:-72923106 Msa0139280:CDS
AATTGATGAGTACTCCCAAA+AGG 0.490054 1_3:+72921147 None:intergenic
CCTTTAAGTGATCATCAAGT+TGG 0.496965 1_3:-72920694 Msa0139280:CDS
CAACAAAGAGCCAAGGAGAA+AGG 0.497525 1_3:-72923066 Msa0139280:CDS
TAAACTAATGTGATGGTTTG+TGG 0.499948 1_3:+72921119 None:intergenic
TGATCATAAATCAGCTGATA+GGG 0.500020 1_3:-72920545 Msa0139280:CDS
ATTAAGTGTTGTTCAAACTT+TGG 0.503007 1_3:+72921006 None:intergenic
TGAATTGATCATGAACCATA+AGG 0.503794 1_3:+72920767 None:intergenic
ATATGTTGCAATGAAGGTTA+GGG 0.507680 1_3:-72920180 Msa0139280:exon
AATCTTAATATGAGATTTGG+TGG 0.509729 1_3:-72920370 Msa0139280:CDS
CAAAATGTTGTTATTGCTAG+TGG 0.510794 1_3:+72921047 None:intergenic
GAGTACTCCCAAAAGGGTTA+GGG 0.513767 1_3:+72921154 None:intergenic
TTGAAGAATGGTGATGAAGA+TGG 0.514253 1_3:+72920937 None:intergenic
CAAGAGCAAGAGCAAGGAAA+GGG 0.515248 1_3:+72919970 None:intergenic
ATATGTGAGGTTTGCAACAA+AGG 0.517578 1_3:-72923161 Msa0139280:CDS
GACGTGTTAAAATAAAATAA+GGG 0.519515 1_3:+72919992 None:intergenic
CAGTTCCTCAAAAGAAAAGA+AGG 0.521220 1_3:-72923781 Msa0139280:five_prime_UTR
TAATGTAAAGTGTTGTTCCT+TGG 0.521540 1_3:+72920728 None:intergenic
TTTGCAACAAAGGGTTTCAA+AGG 0.521693 1_3:-72923151 Msa0139280:CDS
TTGCAACAAAGGGTTTCAAA+GGG 0.525797 1_3:-72923150 Msa0139280:CDS
ATTGATGAGTACTCCCAAAA+GGG 0.530292 1_3:+72921148 None:intergenic
GCAGAAGTAGTAGTTGATTG+AGG 0.531988 1_3:+72923827 None:intergenic
ATTGTGGCACCCTCTTCTCT+AGG 0.536248 1_3:-72922845 Msa0139280:intron
ATATCACTCATATTGAAGAA+TGG 0.537313 1_3:+72920925 None:intergenic
AGATCTCCTAAAGCTCTTGA+AGG 0.547138 1_3:+72923005 None:intergenic
ACTTTGGTGGTGTTGATCCA+AGG 0.547369 1_3:+72921022 None:intergenic
GTAAGCATGGTGAGAAGAAG+TGG 0.548240 1_3:-72922956 Msa0139280:CDS
AAAAGTCCAACAAAGAGCCA+AGG 0.555795 1_3:-72923073 Msa0139280:CDS
AATCTTCAACTTCATAGAAG+AGG 0.557392 1_3:-72923122 Msa0139280:CDS
AACAAATAGATTTATATGTG+AGG 0.560724 1_3:-72923174 Msa0139280:CDS
TTTGGCCTAAACTAATGTGA+TGG 0.560847 1_3:+72921112 None:intergenic
TAGCCAGAAGATAAATAGCT+AGG 0.563569 1_3:-72924268 Msa0139280:five_prime_UTR
AAGCATTACTCTCGTAAGCA+TGG 0.570554 1_3:-72922969 Msa0139280:CDS
ATGTTTGTTACCTAGAGAAG+AGG 0.572256 1_3:+72922835 None:intergenic
AAGCTCTTGAAGGGTCGTGA+TGG 0.580721 1_3:+72923015 None:intergenic
TTCTTAAACAAACAACTACA+TGG 0.582618 1_3:-72920859 Msa0139280:CDS
TGACAGTTTCATCACTCATA+GGG 0.582640 1_3:-72921217 Msa0139280:CDS
TGTTTGTTACCTAGAGAAGA+GGG 0.585590 1_3:+72922836 None:intergenic
AGAGAATATAGATGTGATTG+TGG 0.589973 1_3:-72922861 Msa0139280:CDS
AGAGCTTTAGGAGATCTCAC+TGG 0.591272 1_3:-72922999 Msa0139280:CDS
AAGTGTTGTTCAAACTTTGG+TGG 0.596159 1_3:+72921009 None:intergenic
AAGAAAAGAAGGAATCAACC+TGG 0.619630 1_3:-72923770 Msa0139280:five_prime_UTR
ATGGTCAGAAACATGAGTGG+TGG 0.622609 1_3:-72920307 Msa0139280:CDS
TTTGTCCATTCAATGCAACA+TGG 0.623181 1_3:-72920670 Msa0139280:CDS
AAAGCACATTCTAAGACTTG+TGG 0.628477 1_3:-72922888 Msa0139280:CDS
AGGGTCGTGATGGACGCATG+TGG 0.629562 1_3:+72923025 None:intergenic
GATCTCCTAAAGCTCTTGAA+GGG 0.629745 1_3:+72923006 None:intergenic
TGCAAAATATATAATTATGG+CGG 0.632865 1_3:-72923924 Msa0139280:five_prime_UTR
GGGTCGTGATGGACGCATGT+GGG 0.641981 1_3:+72923026 None:intergenic
TGACATGATGAATACTAGCA+TGG 0.643758 1_3:-72920260 Msa0139280:CDS
AATTCTACCAACAATAACAA+AGG 0.649478 1_3:-72920577 Msa0139280:CDS
GATGAAGAGTGATTTAAAGG+TGG 0.652236 1_3:+72920976 None:intergenic
AACAACCTGAGTAGTAACCA+AGG 0.667707 1_3:-72920745 Msa0139280:CDS
AATGCAGTGGCAGACATGTG+AGG 0.674772 1_3:+72920631 None:intergenic
ACAAGAGTAATGAAGAGACG+AGG 0.717918 1_3:+72924231 None:intergenic
GAAGAACAACAATCTCAACA+AGG 0.728667 1_3:-72920886 Msa0139280:CDS
GGAATGGTCAGAAACATGAG+TGG 0.767875 1_3:-72920310 Msa0139280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTTGATTTTTTTG+TGG + chr1_3:72920131-72920150 None:intergenic 10.0%
!!! TATATAATATTTTGTTGTTT+TGG - chr1_3:72920988-72921007 Msa0139280:CDS 10.0%
!! GAGATAAATTTATTAATTTA+AGG - chr1_3:72924092-72924111 Msa0139280:intron 10.0%
!! GATTGCAAAATATATAATTA+TGG - chr1_3:72920323-72920342 Msa0139280:CDS 15.0%
!!! GATTTTGATAATAAAATTGA+AGG + chr1_3:72920718-72920737 None:intergenic 15.0%
!! CGAATTCTTATAATAAAAAT+TGG + chr1_3:72921618-72921637 None:intergenic 15.0%
!!! TACCTTTTTCATATAATAAA+AGG - chr1_3:72921885-72921904 Msa0139280:intron 15.0%
!! ATATTCATTACACAAAAATA+TGG - chr1_3:72922809-72922828 Msa0139280:intron 15.0%
!! TATTCATTACACAAAAATAT+GGG - chr1_3:72922810-72922829 Msa0139280:intron 15.0%
!!! AAACTCATTTTTAGTAAAAA+TGG - chr1_3:72922924-72922943 Msa0139280:CDS 15.0%
!!! TATCATTGACAATTTTTTTT+GGG + chr1_3:72922971-72922990 None:intergenic 15.0%
!!! ATATCATTGACAATTTTTTT+TGG + chr1_3:72922972-72922991 None:intergenic 15.0%
!!! AAATTAACTTTAGATTTTCT+TGG - chr1_3:72923910-72923929 Msa0139280:five_prime_UTR 15.0%
!! TGCAAAATATATAATTATGG+CGG - chr1_3:72920326-72920345 Msa0139280:CDS 20.0%
!! TAATTCATGTTCATGATTTA+GGG + chr1_3:72920633-72920652 None:intergenic 20.0%
!! TAAATCATGAACATGAATTA+GGG - chr1_3:72920633-72920652 Msa0139280:CDS 20.0%
!! AACAAATAGATTTATATGTG+AGG - chr1_3:72921076-72921095 Msa0139280:CDS 20.0%
!! TAGCATATATTATATATACG+TGG + chr1_3:72921507-72921526 None:intergenic 20.0%
!! AAAAAAGACAACGATATATA+AGG + chr1_3:72921765-72921784 None:intergenic 20.0%
!!! CACCTTTTATTATATGAAAA+AGG + chr1_3:72921890-72921909 None:intergenic 20.0%
!!! ACAAAATTTGAAATGTTTGA+AGG - chr1_3:72922129-72922148 Msa0139280:intron 20.0%
!!! TGAAGGAAAAAAATCAATTT+TGG - chr1_3:72922146-72922165 Msa0139280:intron 20.0%
!!! AAAAAATCAATTTTGGTTCT+AGG - chr1_3:72922153-72922172 Msa0139280:intron 20.0%
!!! AAAAATCAATTTTGGTTCTA+GGG - chr1_3:72922154-72922173 Msa0139280:intron 20.0%
!! GGTAATTAAATTGAAGAATA+GGG + chr1_3:72922342-72922361 None:intergenic 20.0%
!! TGGTAATTAAATTGAAGAAT+AGG + chr1_3:72922343-72922362 None:intergenic 20.0%
!! AGAAAATTCTCTTCATTAAT+TGG - chr1_3:72922365-72922384 Msa0139280:intron 20.0%
!! ATACTCAAAAACTTCAATAT+GGG + chr1_3:72922507-72922526 None:intergenic 20.0%
!! AATACTCAAAAACTTCAATA+TGG + chr1_3:72922508-72922527 None:intergenic 20.0%
!!! AAGTTTGATTTAGAAATTCT+TGG - chr1_3:72922590-72922609 Msa0139280:intron 20.0%
!!! AAAAGGTTAATTGATTTAAG+TGG + chr1_3:72922704-72922723 None:intergenic 20.0%
!!! TCATTTTAATTTGTTACAAG+TGG - chr1_3:72922731-72922750 Msa0139280:intron 20.0%
!! ATTATAATATGAACTTCCAA+AGG - chr1_3:72922833-72922852 Msa0139280:intron 20.0%
!!! TCATTTTTAGTAAAAATGGT+AGG - chr1_3:72922928-72922947 Msa0139280:CDS 20.0%
!!! CATTTTTAGTAAAAATGGTA+GGG - chr1_3:72922929-72922948 Msa0139280:CDS 20.0%
!!! ATTTTTAGTAAAAATGGTAG+GGG - chr1_3:72922930-72922949 Msa0139280:CDS 20.0%
!! TAATTCTTTGTGATTAATTG+TGG - chr1_3:72923002-72923021 Msa0139280:CDS 20.0%
!!! ATTGTAGTAATTTCTAGAAT+TGG + chr1_3:72924238-72924257 None:intergenic 20.0%
!! GACGTGTTAAAATAAAATAA+GGG + chr1_3:72924261-72924280 None:intergenic 20.0%
! ATTAAAAGAAGCTAGAAAGA+AGG + chr1_3:72920159-72920178 None:intergenic 25.0%
!! TTGTTATCTTTTCATGAGAA+AGG - chr1_3:72920224-72920243 Msa0139280:CDS 25.0%
!!! TCTTCATCTACATCATTTTT+TGG - chr1_3:72920354-72920373 Msa0139280:CDS 25.0%
! AAAAAATTAAGCTACTTGCT+TGG + chr1_3:72920510-72920529 None:intergenic 25.0%
! AAAAACAAAAATTCCGAGAA+GGG + chr1_3:72920571-72920590 None:intergenic 25.0%
! CTAATTCATGTTCATGATTT+AGG + chr1_3:72920634-72920653 None:intergenic 25.0%
! CTAAATCATGAACATGAATT+AGG - chr1_3:72920632-72920651 Msa0139280:CDS 25.0%
! AGCTATATAAGAACTATGAT+TGG - chr1_3:72920678-72920697 Msa0139280:CDS 25.0%
! GCTATATAAGAACTATGATT+GGG - chr1_3:72920679-72920698 Msa0139280:CDS 25.0%
! CTATATAAGAACTATGATTG+GGG - chr1_3:72920680-72920699 Msa0139280:CDS 25.0%
!! ATATAAGTAACCCTAACTTT+TGG + chr1_3:72921536-72921555 None:intergenic 25.0%
! TTAGGGTTACTTATATTGTT+TGG - chr1_3:72921540-72921559 Msa0139280:intron 25.0%
! CTCTTTAAACTTCTTTACTA+AGG - chr1_3:72921860-72921879 Msa0139280:intron 25.0%
!!! GCTCTTGTTAACTTTTTTTT+GGG + chr1_3:72922008-72922027 None:intergenic 25.0%
!!! AGCTCTTGTTAACTTTTTTT+TGG + chr1_3:72922009-72922028 None:intergenic 25.0%
! CGTGAATGTTAATAGATTAT+GGG + chr1_3:72922187-72922206 None:intergenic 25.0%
! ACGTGAATGTTAATAGATTA+TGG + chr1_3:72922188-72922207 None:intergenic 25.0%
! AACTTTGTTCTCATATGAAT+TGG - chr1_3:72922226-72922245 Msa0139280:intron 25.0%
!! TAATGAAGAGAATTTTCTGT+TGG + chr1_3:72922363-72922382 None:intergenic 25.0%
! ATATATAGTCATGTTTGTCA+TGG - chr1_3:72922397-72922416 Msa0139280:intron 25.0%
!! TAGAATATAGACAAGTATTG+AGG - chr1_3:72922458-72922477 Msa0139280:intron 25.0%
! TACTCAAAAACTTCAATATG+GGG + chr1_3:72922506-72922525 None:intergenic 25.0%
! TAAATCAAACTTCCAATTTG+AGG + chr1_3:72922582-72922601 None:intergenic 25.0%
!!! TCTTGGTTTGTTTCATATTT+TGG - chr1_3:72922607-72922626 Msa0139280:intron 25.0%
! TAAACTACAATAGAAGTAGA+GGG + chr1_3:72922647-72922666 None:intergenic 25.0%
!!! ATTGACAATTTTTTTTGGGT+GGG + chr1_3:72922967-72922986 None:intergenic 25.0%
!! ATTAAGTGTTGTTCAAACTT+TGG + chr1_3:72923247-72923266 None:intergenic 25.0%
! AATGATGAAGAGTGATTTAA+AGG + chr1_3:72923280-72923299 None:intergenic 25.0%
! TTAAATCACTCTTCATCATT+TGG - chr1_3:72923280-72923299 Msa0139280:intron 25.0%
! ATATCACTCATATTGAAGAA+TGG + chr1_3:72923328-72923347 None:intergenic 25.0%
! TTCTTAAACAAACAACTACA+TGG - chr1_3:72923391-72923410 Msa0139280:intron 25.0%
! AATTCTACCAACAATAACAA+AGG - chr1_3:72923673-72923692 Msa0139280:intron 25.0%
!!! ATTACTACCTTTGTTATTGT+TGG + chr1_3:72923683-72923702 None:intergenic 25.0%
! TTGATAAACTCTATTGCAAA+TGG - chr1_3:72923826-72923845 Msa0139280:five_prime_UTR 25.0%
! AGCAATCTTAATATGAGATT+TGG - chr1_3:72923877-72923896 Msa0139280:five_prime_UTR 25.0%
! AATCTTAATATGAGATTTGG+TGG - chr1_3:72923880-72923899 Msa0139280:five_prime_UTR 25.0%
!! CAATAAACTACACTTCTTTT+AGG + chr1_3:72924202-72924221 None:intergenic 25.0%
!! CTAAAAGAAGTGTAGTTTAT+TGG - chr1_3:72924200-72924219 Msa0139280:five_prime_UTR 25.0%
! TGTAGTTTATTGGTAAAATG+AGG - chr1_3:72924210-72924229 Msa0139280:five_prime_UTR 25.0%
! GGACGTGTTAAAATAAAATA+AGG + chr1_3:72924262-72924281 None:intergenic 25.0%
ATACCTAGCTATTTATCTTC+TGG + chr1_3:72919988-72920007 None:intergenic 30.0%
! TGATTCCTTCTTTTCTTTTG+AGG + chr1_3:72920477-72920496 None:intergenic 30.0%
CAAAAACAAAAATTCCGAGA+AGG + chr1_3:72920572-72920591 None:intergenic 30.0%
!! TTTTAAAAGCCACAAACTCA+TGG + chr1_3:72920812-72920831 None:intergenic 30.0%
!!! TGTTGTTTTGGCATTTTTCA+TGG - chr1_3:72921000-72921019 Msa0139280:CDS 30.0%
AATCTTCAACTTCATAGAAG+AGG - chr1_3:72921128-72921147 Msa0139280:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG - chr1_3:72921339-72921358 Msa0139280:intron 30.0%
AGAGAATATAGATGTGATTG+TGG - chr1_3:72921389-72921408 Msa0139280:intron 30.0%
! TGACCATTTTCTTTGCAAAT+CGG + chr1_3:72921687-72921706 None:intergenic 30.0%
AATTAGAGCTGAAAATGAAG+AGG + chr1_3:72921789-72921808 None:intergenic 30.0%
AACACAAACTAACAGAGAAA+GGG + chr1_3:72922036-72922055 None:intergenic 30.0%
AAACACAAACTAACAGAGAA+AGG + chr1_3:72922037-72922056 None:intergenic 30.0%
!! TTTCTCTGTTAGTTTGTGTT+TGG - chr1_3:72922036-72922055 Msa0139280:intron 30.0%
!! TTCTCTGTTAGTTTGTGTTT+GGG - chr1_3:72922037-72922056 Msa0139280:intron 30.0%
! TAGTGAAGGTGTATATTGTA+TGG - chr1_3:72922063-72922082 Msa0139280:intron 30.0%
TGTTCTCATATGAATTGGAA+TGG - chr1_3:72922231-72922250 Msa0139280:intron 30.0%
TGTGATATAACGAATTCTCT+TGG - chr1_3:72922435-72922454 Msa0139280:intron 30.0%
ATCAAAGAAAGACCTCAAAT+TGG - chr1_3:72922567-72922586 Msa0139280:intron 30.0%
!!! ATATTTTGGCATAATCCCAT+GGG - chr1_3:72922621-72922640 Msa0139280:intron 30.0%
GTAAACTACAATAGAAGTAG+AGG + chr1_3:72922648-72922667 None:intergenic 30.0%
ATTAAACCCACCAAATACAA+AGG + chr1_3:72922760-72922779 None:intergenic 30.0%
AAAAGAGTTATGTTCACCTT+TGG + chr1_3:72922852-72922871 None:intergenic 30.0%
!!! AGGTGAACATAACTCTTTTT+TGG - chr1_3:72922853-72922872 Msa0139280:CDS 30.0%
!!! CATTGACAATTTTTTTTGGG+TGG + chr1_3:72922968-72922987 None:intergenic 30.0%
TAAACTAATGTGATGGTTTG+TGG + chr1_3:72923134-72923153 None:intergenic 30.0%
! ACAAACCATCACATTAGTTT+AGG - chr1_3:72923133-72923152 Msa0139280:CDS 30.0%
TTTGCAATTGATGGGATATT+TGG + chr1_3:72923159-72923178 None:intergenic 30.0%
! CTGATGATTTTGCAATTGAT+GGG + chr1_3:72923167-72923186 None:intergenic 30.0%
! TCTGATGATTTTGCAATTGA+TGG + chr1_3:72923168-72923187 None:intergenic 30.0%
! CAAAATGTTGTTATTGCTAG+TGG + chr1_3:72923206-72923225 None:intergenic 30.0%
! TTGAGATTGTTGTTCTTCAA+AGG + chr1_3:72923362-72923381 None:intergenic 30.0%
! TTCCAATCTTTTCAACCTTA+TGG - chr1_3:72923468-72923487 Msa0139280:intron 30.0%
AACCATAAGGTTGAAAAGAT+TGG + chr1_3:72923473-72923492 None:intergenic 30.0%
TGAATTGATCATGAACCATA+AGG + chr1_3:72923486-72923505 None:intergenic 30.0%
!! TAATGTAAAGTGTTGTTCCT+TGG + chr1_3:72923525-72923544 None:intergenic 30.0%
! CAACTTGATGATCACTTAAA+GGG + chr1_3:72923558-72923577 None:intergenic 30.0%
CTTCAAAAAGCTTCTCAAAT+TGG - chr1_3:72923643-72923662 Msa0139280:intron 30.0%
ATGATCATAAATCAGCTGAT+AGG - chr1_3:72923704-72923723 Msa0139280:intron 30.0%
TGATCATAAATCAGCTGATA+GGG - chr1_3:72923705-72923724 Msa0139280:intron 30.0%
!!! AACAACATCAATGTCACTTT+TGG - chr1_3:72923748-72923767 Msa0139280:intron 30.0%
TGGAAATAGAAGTTCAAGTA+TGG - chr1_3:72923768-72923787 Msa0139280:five_prime_UTR 30.0%
ATTGCTTTCATTGCCAAATA+TGG + chr1_3:72923863-72923882 None:intergenic 30.0%
!! ACTTTAGATTTTCTTGGTGT+TGG - chr1_3:72923916-72923935 Msa0139280:five_prime_UTR 30.0%
AATATGTTGCAATGAAGGTT+AGG - chr1_3:72924069-72924088 Msa0139280:intron 30.0%
ATATGTTGCAATGAAGGTTA+GGG - chr1_3:72924070-72924089 Msa0139280:intron 30.0%
!! TCTTTTCTTTTGAGGAACTG+TGG + chr1_3:72920469-72920488 None:intergenic 35.0%
CAGTTCCTCAAAAGAAAAGA+AGG - chr1_3:72920469-72920488 Msa0139280:CDS 35.0%
AAGAAAAGAAGGAATCAACC+TGG - chr1_3:72920480-72920499 Msa0139280:CDS 35.0%
CTACTATTACCATGAGTTTG+TGG - chr1_3:72920800-72920819 Msa0139280:CDS 35.0%
TTTGTTGCCATTAGAGTCTT+GGG + chr1_3:72921062-72921081 None:intergenic 35.0%
! ATTTGTTGCCATTAGAGTCT+TGG + chr1_3:72921063-72921082 None:intergenic 35.0%
ATATGTGAGGTTTGCAACAA+AGG - chr1_3:72921089-72921108 Msa0139280:CDS 35.0%
TATGTGAGGTTTGCAACAAA+GGG - chr1_3:72921090-72921109 Msa0139280:CDS 35.0%
TTTGCAACAAAGGGTTTCAA+AGG - chr1_3:72921099-72921118 Msa0139280:CDS 35.0%
TTGCAACAAAGGGTTTCAAA+GGG - chr1_3:72921100-72921119 Msa0139280:CDS 35.0%
CACAAATAAACCTTTCTCCT+TGG + chr1_3:72921197-72921216 None:intergenic 35.0%
!! AAAGCACATTCTAAGACTTG+TGG - chr1_3:72921362-72921381 Msa0139280:intron 35.0%
! TGTTTGTTACCTAGAGAAGA+GGG + chr1_3:72921417-72921436 None:intergenic 35.0%
! ATGTTTGTTACCTAGAGAAG+AGG + chr1_3:72921418-72921437 None:intergenic 35.0%
!!! TGCTACTTTTGCCAAAAGTT+AGG - chr1_3:72921522-72921541 Msa0139280:intron 35.0%
!!! GCTACTTTTGCCAAAAGTTA+GGG - chr1_3:72921523-72921542 Msa0139280:intron 35.0%
TTTCTTTGCAAATCGGATGA+TGG + chr1_3:72921680-72921699 None:intergenic 35.0%
! CATCCGATTTGCAAAGAAAA+TGG - chr1_3:72921681-72921700 Msa0139280:intron 35.0%
! TTCCATGTTCTTTTCAGCAA+TGG - chr1_3:72922315-72922334 Msa0139280:intron 35.0%
! TCCATGTTCTTTTCAGCAAT+GGG - chr1_3:72922316-72922335 Msa0139280:intron 35.0%
GTTGCTTGCATTTATTGAGT+AGG - chr1_3:72922480-72922499 Msa0139280:intron 35.0%
!!! CATATTTTGGCATAATCCCA+TGG - chr1_3:72922620-72922639 Msa0139280:intron 35.0%
TTTGTGATTAATTGTGGTGC+AGG - chr1_3:72923008-72923027 Msa0139280:CDS 35.0%
TGACAGTTTCATCACTCATA+GGG - chr1_3:72923033-72923052 Msa0139280:CDS 35.0%
ATTGATGAGTACTCCCAAAA+GGG + chr1_3:72923105-72923124 None:intergenic 35.0%
AATTGATGAGTACTCCCAAA+AGG + chr1_3:72923106-72923125 None:intergenic 35.0%
TTTGGCCTAAACTAATGTGA+TGG + chr1_3:72923141-72923160 None:intergenic 35.0%
! TGCTAGTGGATGATGTAATT+TGG + chr1_3:72923192-72923211 None:intergenic 35.0%
! AATAACAACATTTTGCGCCT+TGG - chr1_3:72923211-72923230 Msa0139280:five_prime_UTR 35.0%
! AAGTGTTGTTCAAACTTTGG+TGG + chr1_3:72923244-72923263 None:intergenic 35.0%
GATGAAGAGTGATTTAAAGG+TGG + chr1_3:72923277-72923296 None:intergenic 35.0%
! TTGAAGAATGGTGATGAAGA+TGG + chr1_3:72923316-72923335 None:intergenic 35.0%
GAAGAACAACAATCTCAACA+AGG - chr1_3:72923364-72923383 Msa0139280:intron 35.0%
TTTGTATTGCCTTGAAGATC+AGG + chr1_3:72923430-72923449 None:intergenic 35.0%
! CCAACTTGATGATCACTTAA+AGG + chr1_3:72923559-72923578 None:intergenic 35.0%
CCTTTAAGTGATCATCAAGT+TGG - chr1_3:72923556-72923575 Msa0139280:intron 35.0%
TTTGTCCATTCAATGCAACA+TGG - chr1_3:72923580-72923599 Msa0139280:intron 35.0%
TTTGACCATGTTGCATTGAA+TGG + chr1_3:72923588-72923607 None:intergenic 35.0%
GGAAACACATCATCCATATT+TGG - chr1_3:72923847-72923866 Msa0139280:five_prime_UTR 35.0%
!!! TTAGATTTTCTTGGTGTTGG+AGG - chr1_3:72923919-72923938 Msa0139280:five_prime_UTR 35.0%
TGACATGATGAATACTAGCA+TGG - chr1_3:72923990-72924009 Msa0139280:intron 35.0%
!!! GAGTTGAATGTGCTGATTTT+AGG + chr1_3:72924032-72924051 None:intergenic 35.0%
! GCACATTCAACTCAACATTT+TGG - chr1_3:72924039-72924058 Msa0139280:intron 35.0%
GCTCAAATATGTTGCAATGA+AGG - chr1_3:72924064-72924083 Msa0139280:intron 35.0%
ACAAGAGTAATGAAGAGACG+AGG + chr1_3:72920022-72920041 None:intergenic 40.0%
TTGCAAGAGGAAAGGATCTA+AGG + chr1_3:72920047-72920066 None:intergenic 40.0%
CAAAAAGGTTGCAAGAGGAA+AGG + chr1_3:72920055-72920074 None:intergenic 40.0%
CTCACAGATTGAGAGCAAAA+AGG + chr1_3:72920070-72920089 None:intergenic 40.0%
GTAGTAGTTGATTGAGGATG+AGG + chr1_3:72920420-72920439 None:intergenic 40.0%
GCAGAAGTAGTAGTTGATTG+AGG + chr1_3:72920426-72920445 None:intergenic 40.0%
!! TTTTGAGGAACTGTGGTTGA+AGG + chr1_3:72920462-72920481 None:intergenic 40.0%
ACTATCTCCCAAGACTCTAA+TGG - chr1_3:72921052-72921071 Msa0139280:CDS 40.0%
!! GACTTTTGCTTTAGCTTCCA+AGG + chr1_3:72921164-72921183 None:intergenic 40.0%
AAAAGTCCAACAAAGAGCCA+AGG - chr1_3:72921177-72921196 Msa0139280:CDS 40.0%
GATCTCCTAAAGCTCTTGAA+GGG + chr1_3:72921247-72921266 None:intergenic 40.0%
AGATCTCCTAAAGCTCTTGA+AGG + chr1_3:72921248-72921267 None:intergenic 40.0%
AAGCATTACTCTCGTAAGCA+TGG - chr1_3:72921281-72921300 Msa0139280:intron 40.0%
TTGTGTTTGGGTGTTAGTGA+AGG - chr1_3:72922049-72922068 Msa0139280:intron 40.0%
ATGAATTGGAATGGAGATGC+TGG - chr1_3:72922240-72922259 Msa0139280:intron 40.0%
TGAATTGGAATGGAGATGCT+GGG - chr1_3:72922241-72922260 Msa0139280:intron 40.0%
CAAGTGGCTACCTTTGTATT+TGG - chr1_3:72922747-72922766 Msa0139280:intron 40.0%
TGGCTACCTTTGTATTTGGT+GGG - chr1_3:72922751-72922770 Msa0139280:intron 40.0%
GTGACAGTTTCATCACTCAT+AGG - chr1_3:72923032-72923051 Msa0139280:CDS 40.0%
! TTAAGACACCCTAACCCTTT+TGG - chr1_3:72923088-72923107 Msa0139280:CDS 40.0%
! TAAGACACCCTAACCCTTTT+GGG - chr1_3:72923089-72923108 Msa0139280:CDS 40.0%
ATGCATCTTCCTGATCTTCA+AGG - chr1_3:72923418-72923437 Msa0139280:intron 40.0%
AACAACCTGAGTAGTAACCA+AGG - chr1_3:72923505-72923524 Msa0139280:intron 40.0%
TTGTTCCTTGGTTACTACTC+AGG + chr1_3:72923513-72923532 None:intergenic 40.0%
!!! AGCTTTTTGAAGCAATGCAG+TGG + chr1_3:72923635-72923654 None:intergenic 40.0%
GATGACAACAACGATCTTCA+TGG - chr1_3:72923802-72923821 Msa0139280:five_prime_UTR 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG - chr1_3:72923924-72923943 Msa0139280:five_prime_UTR 40.0%
GAGAGCAAAAAGGTTGCAAG+AGG + chr1_3:72920060-72920079 None:intergenic 45.0%
AGTGCTATCACTTCTGCATC+TGG + chr1_3:72921035-72921054 None:intergenic 45.0%
GAAGAGGACACAATCTTCCT+TGG - chr1_3:72921144-72921163 Msa0139280:CDS 45.0%
! CTTTCTCCTTGGCTCTTTGT+TGG + chr1_3:72921186-72921205 None:intergenic 45.0%
CAACAAAGAGCCAAGGAGAA+AGG - chr1_3:72921184-72921203 Msa0139280:CDS 45.0%
!! AGAGCTTTAGGAGATCTCAC+TGG - chr1_3:72921251-72921270 Msa0139280:intron 45.0%
GTAAGCATGGTGAGAAGAAG+TGG - chr1_3:72921294-72921313 Msa0139280:intron 45.0%
AGGTGTATATTGTATGGCGC+AGG - chr1_3:72922069-72922088 Msa0139280:intron 45.0%
GCCCATTGCTGAAAAGAACA+TGG + chr1_3:72922320-72922339 None:intergenic 45.0%
AATAGAAGTAGAGGGCCCAT+GGG + chr1_3:72922639-72922658 None:intergenic 45.0%
GTGGCTACCTTTGTATTTGG+TGG - chr1_3:72922750-72922769 Msa0139280:intron 45.0%
GAGTACTCCCAAAAGGGTTA+GGG + chr1_3:72923099-72923118 None:intergenic 45.0%
TGAGTACTCCCAAAAGGGTT+AGG + chr1_3:72923100-72923119 None:intergenic 45.0%
!! ACTTTGGTGGTGTTGATCCA+AGG + chr1_3:72923231-72923250 None:intergenic 45.0%
GGAATGGTCAGAAACATGAG+TGG - chr1_3:72923940-72923959 Msa0139280:intron 45.0%
ATGGTCAGAAACATGAGTGG+TGG - chr1_3:72923943-72923962 Msa0139280:intron 45.0%
!! ATTAAAATGAAAAAAAAAAA+AGG + chr1_3:72922721-72922740 None:intergenic 5.0%
!! TATAATTTATATAATCAATT+AGG - chr1_3:72922780-72922799 Msa0139280:intron 5.0%
!! AGCTACTTGCTTGGTGTTCC+AGG + chr1_3:72920501-72920520 None:intergenic 50.0%
AAGCTCTTGAAGGGTCGTGA+TGG + chr1_3:72921238-72921257 None:intergenic 50.0%
CACGACCCTTCAAGAGCTTT+AGG - chr1_3:72921239-72921258 Msa0139280:intron 50.0%
ATTGTGGCACCCTCTTCTCT+AGG - chr1_3:72921405-72921424 Msa0139280:intron 50.0%
CAATAGAAGTAGAGGGCCCA+TGG + chr1_3:72922640-72922659 None:intergenic 50.0%
AATGCAGTGGCAGACATGTG+AGG + chr1_3:72923622-72923641 None:intergenic 50.0%
CCACATGCACACACCCTTCT+CGG - chr1_3:72920555-72920574 Msa0139280:CDS 55.0%
! CCGAGAAGGGTGTGTGCATG+TGG + chr1_3:72920558-72920577 None:intergenic 60.0%
! TGATGGACGCATGTGGGCTC+AGG + chr1_3:72921221-72921240 None:intergenic 60.0%
!! GGGTCGTGATGGACGCATGT+GGG + chr1_3:72921227-72921246 None:intergenic 60.0%
!! AGGGTCGTGATGGACGCATG+TGG + chr1_3:72921228-72921247 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72919985 72924287 72919985 ID=Msa0139280;Name=Msa0139280
chr1_3 mRNA 72919985 72924287 72919985 ID=Msa0139280-mRNA-1;Parent=Msa0139280;Name=Msa0139280-mRNA-1;_AED=0.11;_eAED=0.11;_QI=332|1|1|1|0.33|0.25|4|204|469
chr1_3 exon 72919985 72921242 72919985 ID=Msa0139280-mRNA-1:exon:25426;Parent=Msa0139280-mRNA-1
chr1_3 exon 72922846 72923242 72922846 ID=Msa0139280-mRNA-1:exon:25425;Parent=Msa0139280-mRNA-1
chr1_3 exon 72923758 72923948 72923758 ID=Msa0139280-mRNA-1:exon:25424;Parent=Msa0139280-mRNA-1
chr1_3 exon 72924188 72924287 72924188 ID=Msa0139280-mRNA-1:exon:25423;Parent=Msa0139280-mRNA-1
chr1_3 five_prime_UTR 72924188 72924287 72924188 ID=Msa0139280-mRNA-1:five_prime_utr;Parent=Msa0139280-mRNA-1
chr1_3 five_prime_UTR 72923758 72923948 72923758 ID=Msa0139280-mRNA-1:five_prime_utr;Parent=Msa0139280-mRNA-1
chr1_3 five_prime_UTR 72923202 72923242 72923202 ID=Msa0139280-mRNA-1:five_prime_utr;Parent=Msa0139280-mRNA-1
chr1_3 CDS 72922846 72923201 72922846 ID=Msa0139280-mRNA-1:cds;Parent=Msa0139280-mRNA-1
chr1_3 CDS 72920189 72921242 72920189 ID=Msa0139280-mRNA-1:cds;Parent=Msa0139280-mRNA-1
chr1_3 three_prime_UTR 72919985 72920188 72919985 ID=Msa0139280-mRNA-1:three_prime_utr;Parent=Msa0139280-mRNA-1
Gene Sequence

>Msa0139280

ATGGCAACAAATAGATTTATATGTGAGGTTTGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGCGTCCATCACGACCCTTCAAGAGCTTTAGGAGATCTCACTGGAATTAAAAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACAAGAGAGTGTATTAAGACACCCTAACCCTTTTGGGAGTACTCATCAATTGTATGCCACAAACCATCACATTAGTTTAGGCCAAATATCCCATCAATTGCAAAATCATCAGAACCAAATTACATCATCCACTAGCAATAACAACATTTTGCGCCTTGGATCAACACCACCAAAGTTTGAACAACACTTAATATCATCACCACCTTTAAATCACTCTTCATCATTTGGACACTCAATTCCATCTTCATCACCATTCTTCAATATGAGTGATATTTCAAATCAATCCTTTGAAGAACAACAATCTCAACAAGGACAATTCTTAAACAAACAACTACATGGTCTAATGCATCTTCCTGATCTTCAAGGCAATACAAATACAAACAATTCAAATTCTTCCAATCTTTTCAACCTTATGGTTCATGATCAATTCAACAACCTGAGTAGTAACCAAGGAACAACACTTTACATTAACAACAATAACCCTTTAAGTGATCATCAAGTTGGTTTTGTCCATTCAATGCAACATGGTCAAAACATGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACTAATTCTACCAACAATAACAAAGGTAGTAATAATGATCATAAATCAGCTGATAGGGACTTTGTTGTGTCTGATCACAACAACATCAATGTCACTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGATGACAACAACGATCTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCCATATTTGGCAATGAAAGCAATCTTAATATGAGATTTGGTGGATCTGATAAATTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTCAGAAACATGAGTGGTGGATTTTCACAAAGTGAACAACAACGTGACATGATGAATACTAGCATGGCTTCTTTGAATCATGACCTAAAATCAGCACATTCAACTCAACATTTTGGAAGCTCAAATATGTTGCAATGA
Protein sequence

>Msa0139280

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRHPNPFGSTHQLYATNHHISLGQISHQLQNHQNQITSSTSNNNILRLGSTPPKFEQHLISSPPLNHSSSFGHSIPSSSPFFNMSDISNQSFEEQQSQQGQFLNKQLHGLMHLPDLQGNTNTNNSNSSNLFNLMVHDQFNNLSSNQGTTLYINNNNPLSDHQVGFVHSMQHGQNMSSPHMSATALLQKASQIGSTNSTNNNKGSNNDHKSADRDFVVSDHNNINVTFGNRSSSMENDHDDNNDLHGLINSIANGNTSSIFGNESNLNMRFGGSDKLTLDFLGVGGMVRNMSGGFSQSEQQRDMMNTSMASLNHDLKSAHSTQHFGSSNMLQ*