Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496000 | XP_003599439.1 | 77.966 | 118 | 8 | 1 | 1 | 100 | 243 | 360 | 5.34e-43 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496000 | sp|Q9ZSL6|SIGD_ARATH | 41.525 | 118 | 51 | 1 | 1 | 100 | 256 | 373 | 1.07e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496000 | G7J0X0 | 77.966 | 118 | 8 | 1 | 1 | 100 | 243 | 360 | 2.55e-43 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0130570 | Msa0496000 | 0.802879 | 4.549397e-49 | -8.615850e-47 |
| Msa0495830 | Msa0496000 | 0.897554 | 1.256407e-76 | -8.615850e-47 |
| Msa0496000 | Msa0584130 | 0.812280 | 4.589934e-51 | -8.615850e-47 |
| Msa0496000 | Msa1020720 | 0.813766 | 2.167884e-51 | -8.615850e-47 |
| Msa0496000 | Msa1139410 | 0.811471 | 6.887773e-51 | -8.615850e-47 |
| Msa0496000 | Msa1379990 | 0.808339 | 3.252078e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496000 | MtrunA17_Chr3g0090001 | 77.966 | 118 | 8 | 1 | 1 | 100 | 243 | 360 | 4.91e-47 | 155 |
| Msa0496000 | MtrunA17_Chr3g0089951 | 78.000 | 100 | 4 | 1 | 8 | 89 | 1 | 100 | 1.75e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0496000 | AT5G13730.1 | 41.525 | 118 | 51 | 1 | 1 | 100 | 256 | 373 | 1.09e-22 | 91.7 |
Find 15 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATATAGGGAGAAAAGTA+TGG | 0.356876 | 3_4:+25869969 | Msa0496000:intron |
| ATAGCTCTGTCCAATGAAAT+TGG | 0.360695 | 3_4:-25870128 | None:intergenic |
| ATATTATACTTTGGACTCAA+TGG | 0.405310 | 3_4:+25873607 | Msa0496000:CDS |
| AAGTAGACAACCAATTTCAT+TGG | 0.441740 | 3_4:+25870118 | Msa0496000:CDS |
| GAGATTGTAATATTATACTT+TGG | 0.445378 | 3_4:+25873598 | Msa0496000:CDS |
| GAGAGAATCTGACAGATTCA+TGG | 0.482979 | 3_4:+25873629 | Msa0496000:CDS |
| GAGAGGCAGCTGGTGAAGCA+AGG | 0.545194 | 3_4:+25873535 | Msa0496000:intron |
| TCAGCAATTTCATTATATGT+CGG | 0.554776 | 3_4:-25870050 | None:intergenic |
| AGAGGCAGCTGGTGAAGCAA+GGG | 0.560055 | 3_4:+25873536 | Msa0496000:intron |
| TCAAAGCAACTTAATACTGA+AGG | 0.589123 | 3_4:+25870157 | Msa0496000:CDS |
| ATAGGGAGAAAAGTATGGAA+TGG | 0.600118 | 3_4:+25869974 | Msa0496000:intron |
| GACATATAATGAAATTGCTG+AGG | 0.644481 | 3_4:+25870052 | Msa0496000:CDS |
| GAGGCAGCTGGTGAAGCAAG+GGG | 0.671673 | 3_4:+25873537 | Msa0496000:intron |
| TCTTAAGACGAAGACTGAGG+CGG | 0.681542 | 3_4:+25870024 | Msa0496000:CDS |
| ATGTCTTAAGACGAAGACTG+AGG | 0.725315 | 3_4:+25870021 | Msa0496000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCATTTAAATAATCTT+AGG | - | chr3_4:25870496-25870515 | None:intergenic | 10.0% |
| !! | TTAATTTATTGGTATGTTAA+TGG | + | chr3_4:25871905-25871924 | Msa0496000:intron | 15.0% |
| !! | AGAAAATCACAAAAAAAAAA+TGG | + | chr3_4:25872138-25872157 | Msa0496000:intron | 15.0% |
| !! | ATGAAATAGTTTATATTGAA+TGG | + | chr3_4:25872607-25872626 | Msa0496000:intron | 15.0% |
| !!! | TGAGAAAATATTTTATATTG+AGG | + | chr3_4:25872636-25872655 | Msa0496000:intron | 15.0% |
| !! | ATTGATATGAAAATTATGTT+TGG | + | chr3_4:25872796-25872815 | Msa0496000:intron | 15.0% |
| !! | AAATTGTATAAACTCAAAAT+GGG | + | chr3_4:25873124-25873143 | Msa0496000:intron | 15.0% |
| !!! | TACATCTGAAATAAATAAAA+GGG | - | chr3_4:25873245-25873264 | None:intergenic | 15.0% |
| !!! | TTGGTTAGTTTCTTATATAT+AGG | + | chr3_4:25869956-25869975 | Msa0496000:intron | 20.0% |
| !!! | TGGTTAGTTTCTTATATATA+GGG | + | chr3_4:25869957-25869976 | Msa0496000:intron | 20.0% |
| !! | ACAATTTATTACAAATTCAG+CGG | - | chr3_4:25870290-25870309 | None:intergenic | 20.0% |
| !! | ATTAAATGGTTACGAATTAA+CGG | + | chr3_4:25870421-25870440 | Msa0496000:intron | 20.0% |
| !! | TTCATTTAAATAATCTTAGG+TGG | - | chr3_4:25870493-25870512 | None:intergenic | 20.0% |
| !! | TTTAACTCAATGATCAATTA+TGG | - | chr3_4:25871009-25871028 | None:intergenic | 20.0% |
| !!! | ATACATATTTTCTTTGATTC+TGG | + | chr3_4:25871068-25871087 | Msa0496000:intron | 20.0% |
| !!! | TAGACCATTTTTATGATTAT+TGG | + | chr3_4:25871607-25871626 | Msa0496000:intron | 20.0% |
| !!! | AGAATGATTATTTCTGAATT+AGG | + | chr3_4:25871699-25871718 | Msa0496000:intron | 20.0% |
| !!! | ATTATTTCTGAATTAGGTTT+GGG | + | chr3_4:25871705-25871724 | Msa0496000:intron | 20.0% |
| !! | AAATTGATGAATTAAGATGT+TGG | + | chr3_4:25871768-25871787 | Msa0496000:intron | 20.0% |
| !! | AATTGATGAATTAAGATGTT+GGG | + | chr3_4:25871769-25871788 | Msa0496000:intron | 20.0% |
| !! | AAATCATTTCATATGCAATT+AGG | - | chr3_4:25872067-25872086 | None:intergenic | 20.0% |
| !! | TATGATCAAAATAGTATTTC+AGG | + | chr3_4:25873058-25873077 | Msa0496000:intron | 20.0% |
| !! | GAAATTGTATAAACTCAAAA+TGG | + | chr3_4:25873123-25873142 | Msa0496000:intron | 20.0% |
| !! | TGAAATAAATAAAAGGGATT+GGG | - | chr3_4:25873239-25873258 | None:intergenic | 20.0% |
| !!! | GTACATCTGAAATAAATAAA+AGG | - | chr3_4:25873246-25873265 | None:intergenic | 20.0% |
| !!! | ATTATATGATTTGTATTCAG+AGG | + | chr3_4:25873357-25873376 | Msa0496000:intron | 20.0% |
| !! | GAGATTGTAATATTATACTT+TGG | + | chr3_4:25873598-25873617 | Msa0496000:CDS | 20.0% |
| ! | TATATATAGGGAGAAAAGTA+TGG | + | chr3_4:25869969-25869988 | Msa0496000:intron | 25.0% |
| ! | TCAGCAATTTCATTATATGT+CGG | - | chr3_4:25870053-25870072 | None:intergenic | 25.0% |
| ! | CAATTTATTACAAATTCAGC+GGG | - | chr3_4:25870289-25870308 | None:intergenic | 25.0% |
| !! | AGAACGGAAATAATTTTCAA+AGG | + | chr3_4:25870327-25870346 | Msa0496000:intron | 25.0% |
| !!! | ATTATGTCTTTTTCACTTGA+AGG | + | chr3_4:25870450-25870469 | Msa0496000:intron | 25.0% |
| !!! | TTATGTCTTTTTCACTTGAA+GGG | + | chr3_4:25870451-25870470 | Msa0496000:intron | 25.0% |
| ! | TACAAAAGTGAAATAGGTAA+TGG | - | chr3_4:25870625-25870644 | None:intergenic | 25.0% |
| !! | TTTTGCTACAAAAGTGAAAT+AGG | - | chr3_4:25870631-25870650 | None:intergenic | 25.0% |
| ! | TAAAAGTTGTTACTACCTTT+GGG | + | chr3_4:25870875-25870894 | Msa0496000:intron | 25.0% |
| ! | TGTTAGAATTTCTTTATGAC+TGG | + | chr3_4:25871031-25871050 | Msa0496000:intron | 25.0% |
| !!! | ACATAAGCTATTTTGGAAAA+TGG | + | chr3_4:25871433-25871452 | Msa0496000:intron | 25.0% |
| !!! | CTATTTTGGAAAATGGATTA+TGG | + | chr3_4:25871440-25871459 | Msa0496000:intron | 25.0% |
| ! | TTTCAAATGTACCAATCATA+TGG | - | chr3_4:25871659-25871678 | None:intergenic | 25.0% |
| !!! | GATTATTTCTGAATTAGGTT+TGG | + | chr3_4:25871704-25871723 | Msa0496000:intron | 25.0% |
| !!! | TTATTTCTGAATTAGGTTTG+GGG | + | chr3_4:25871706-25871725 | Msa0496000:intron | 25.0% |
| ! | CACAAAAAAAAAATGGAATG+AGG | + | chr3_4:25872145-25872164 | Msa0496000:intron | 25.0% |
| !!! | GAAATGAGGAATTTTAGTTA+TGG | + | chr3_4:25872868-25872887 | Msa0496000:intron | 25.0% |
| !! | TTTCTGATAACAACTAGTTT+CGG | - | chr3_4:25872911-25872930 | None:intergenic | 25.0% |
| ! | TATATCAGAATACGATAGAT+TGG | + | chr3_4:25872973-25872992 | Msa0496000:intron | 25.0% |
| ! | GAAATAAATAAAAGGGATTG+GGG | - | chr3_4:25873238-25873257 | None:intergenic | 25.0% |
| ! | CTGAAATAAATAAAAGGGAT+TGG | - | chr3_4:25873240-25873259 | None:intergenic | 25.0% |
| ! | TCTTTACTATGATATAATGC+AGG | + | chr3_4:25873471-25873490 | Msa0496000:intron | 25.0% |
| ! | ATATTATACTTTGGACTCAA+TGG | + | chr3_4:25873607-25873626 | Msa0496000:CDS | 25.0% |
| GACATATAATGAAATTGCTG+AGG | + | chr3_4:25870052-25870071 | Msa0496000:CDS | 30.0% | |
| AAGTAGACAACCAATTTCAT+TGG | + | chr3_4:25870118-25870137 | Msa0496000:CDS | 30.0% | |
| TCAAAGCAACTTAATACTGA+AGG | + | chr3_4:25870157-25870176 | Msa0496000:CDS | 30.0% | |
| GTATCAGTTACATGTAAGAA+CGG | + | chr3_4:25870311-25870330 | Msa0496000:intron | 30.0% | |
| TTCTCGTATTACTATTCCAA+CGG | + | chr3_4:25870389-25870408 | Msa0496000:intron | 30.0% | |
| ! | ATTTAATTTCTCATGTCCGT+TGG | - | chr3_4:25870408-25870427 | None:intergenic | 30.0% |
| AACGGACATGAGAAATTAAA+TGG | + | chr3_4:25870407-25870426 | Msa0496000:intron | 30.0% | |
| TAGAAGAATGAAGAAAGTGA+GGG | - | chr3_4:25870520-25870539 | None:intergenic | 30.0% | |
| !!! | GAGGTGCTGATTTTTTTTTT+TGG | - | chr3_4:25870556-25870575 | None:intergenic | 30.0% |
| ! | AAAGTGAAATAGGTAATGGT+GGG | - | chr3_4:25870621-25870640 | None:intergenic | 30.0% |
| ! | AAAAGTGAAATAGGTAATGG+TGG | - | chr3_4:25870622-25870641 | None:intergenic | 30.0% |
| AAACAAGAACATTGAAGCTA+GGG | + | chr3_4:25870732-25870751 | Msa0496000:intron | 30.0% | |
| GTGACTAATAGCTTAAATTG+AGG | + | chr3_4:25870801-25870820 | Msa0496000:intron | 30.0% | |
| GTAAAAGTTGTTACTACCTT+TGG | + | chr3_4:25870874-25870893 | Msa0496000:intron | 30.0% | |
| ! | TGATCAATTATGGAAGCTTT+TGG | - | chr3_4:25870999-25871018 | None:intergenic | 30.0% |
| AATTTCTTTATGACTGGTGT+AGG | + | chr3_4:25871037-25871056 | Msa0496000:intron | 30.0% | |
| GTTGAAATTGAATTGTCTAG+AGG | + | chr3_4:25871100-25871119 | Msa0496000:intron | 30.0% | |
| ATCCACAACTTAGTCATTTA+AGG | - | chr3_4:25871161-25871180 | None:intergenic | 30.0% | |
| TGTTGGAACATCTTTGTTAA+AGG | + | chr3_4:25871220-25871239 | Msa0496000:intron | 30.0% | |
| GAACATCTTTGTTAAAGGAT+GGG | + | chr3_4:25871225-25871244 | Msa0496000:intron | 30.0% | |
| ! | ATTGAAATTTTCGTGTATGC+TGG | + | chr3_4:25871342-25871361 | Msa0496000:intron | 30.0% |
| !! | ACAAATGAGTTGAGTTGTTT+TGG | + | chr3_4:25871386-25871405 | Msa0496000:intron | 30.0% |
| TTCCAAAATAGCTTATGTCT+TGG | - | chr3_4:25871431-25871450 | None:intergenic | 30.0% | |
| !! | GAAAATGGATTATGGAGATT+TGG | + | chr3_4:25871448-25871467 | Msa0496000:intron | 30.0% |
| TAATCATAATTGATCCCCAA+AGG | - | chr3_4:25871558-25871577 | None:intergenic | 30.0% | |
| TCGGCCAATAATCATAAAAA+TGG | - | chr3_4:25871614-25871633 | None:intergenic | 30.0% | |
| ! | ACATCAATCACAGTTAGTTT+CGG | - | chr3_4:25871973-25871992 | None:intergenic | 30.0% |
| TAGGACATCAATAACTTTCT+AGG | - | chr3_4:25872048-25872067 | None:intergenic | 30.0% | |
| ! | AGCTACGAAGCAATATTTTA+TGG | + | chr3_4:25872827-25872846 | Msa0496000:intron | 30.0% |
| ! | GCTACGAAGCAATATTTTAT+GGG | + | chr3_4:25872828-25872847 | Msa0496000:intron | 30.0% |
| !!! | GAATTTTAGTTATGGAACTC+CGG | + | chr3_4:25872876-25872895 | Msa0496000:intron | 30.0% |
| !! | TATAAACTCAAAATGGGTTG+AGG | + | chr3_4:25873130-25873149 | Msa0496000:intron | 30.0% |
| GTACAAGTTACCATACAATA+AGG | + | chr3_4:25873262-25873281 | Msa0496000:intron | 30.0% | |
| AAGTTACCATACAATAAGGA+TGG | + | chr3_4:25873266-25873285 | Msa0496000:intron | 30.0% | |
| TCTAGCATGTGTGTTAAAAT+TGG | - | chr3_4:25873419-25873438 | None:intergenic | 30.0% | |
| ! | ATAGGGAGAAAAGTATGGAA+TGG | + | chr3_4:25869974-25869993 | Msa0496000:intron | 35.0% |
| ! | ATAGCTCTGTCCAATGAAAT+TGG | - | chr3_4:25870131-25870150 | None:intergenic | 35.0% |
| ATTGAGAAATCGACGATATC+TGG | + | chr3_4:25870361-25870380 | Msa0496000:intron | 35.0% | |
| AAATGGTTACGAATTAACGG+AGG | + | chr3_4:25870424-25870443 | Msa0496000:intron | 35.0% | |
| !!! | TTTTCACTTGAAGGGCATTT+TGG | + | chr3_4:25870459-25870478 | Msa0496000:intron | 35.0% |
| GTAGAAGAATGAAGAAAGTG+AGG | - | chr3_4:25870521-25870540 | None:intergenic | 35.0% | |
| TGAAAGAATGAAACACGTGA+GGG | - | chr3_4:25870596-25870615 | None:intergenic | 35.0% | |
| !! | TGTTGTGTTTTGAGCATTAG+AGG | + | chr3_4:25870695-25870714 | Msa0496000:intron | 35.0% |
| CAAACAAGAACATTGAAGCT+AGG | + | chr3_4:25870731-25870750 | Msa0496000:intron | 35.0% | |
| !!! | GAAGCTTTTGGAACAACTTA+TGG | - | chr3_4:25870987-25871006 | None:intergenic | 35.0% |
| TGCCTTAAATGACTAAGTTG+TGG | + | chr3_4:25871156-25871175 | Msa0496000:intron | 35.0% | |
| ! | TGACTAAGTTGTGGATTAAC+CGG | + | chr3_4:25871165-25871184 | Msa0496000:intron | 35.0% |
| GGAACATCTTTGTTAAAGGA+TGG | + | chr3_4:25871224-25871243 | Msa0496000:intron | 35.0% | |
| ACAGCTTAATTAGCAGCTTA+TGG | - | chr3_4:25871272-25871291 | None:intergenic | 35.0% | |
| TAGCTTATGTCTTGGCTTAT+AGG | - | chr3_4:25871423-25871442 | None:intergenic | 35.0% | |
| ! | AGCCAAGACATAAGCTATTT+TGG | + | chr3_4:25871426-25871445 | Msa0496000:intron | 35.0% |
| TAAACTAAAGGAACTCACCT+TGG | - | chr3_4:25871528-25871547 | None:intergenic | 35.0% | |
| !! | AAAGGTGGGTTCTAAACTAA+AGG | - | chr3_4:25871540-25871559 | None:intergenic | 35.0% |
| ! | TTTAGTTTAGAACCCACCTT+TGG | + | chr3_4:25871539-25871558 | Msa0496000:intron | 35.0% |
| ! | TTAGTTTAGAACCCACCTTT+GGG | + | chr3_4:25871540-25871559 | Msa0496000:intron | 35.0% |
| TGACTATCATGCCATATGAT+TGG | + | chr3_4:25871645-25871664 | Msa0496000:intron | 35.0% | |
| GAAACTAACTGTGATTGATG+TGG | + | chr3_4:25871972-25871991 | Msa0496000:intron | 35.0% | |
| GGTTTACTGAATTCTTGAAG+TGG | + | chr3_4:25871993-25872012 | Msa0496000:intron | 35.0% | |
| TGGTCTGATGAATAAATGCT+AGG | + | chr3_4:25872013-25872032 | Msa0496000:intron | 35.0% | |
| ATGTGAGCATATTGCTCATA+GGG | - | chr3_4:25872110-25872129 | None:intergenic | 35.0% | |
| AATGTGAGCATATTGCTCAT+AGG | - | chr3_4:25872111-25872130 | None:intergenic | 35.0% | |
| TCTACTAATCGTTGGAAATG+AGG | + | chr3_4:25872854-25872873 | Msa0496000:intron | 35.0% | |
| ATGTGTGTTAAAATTGGCGT+CGG | - | chr3_4:25873413-25873432 | None:intergenic | 35.0% | |
| ATAATGCAGGAGATTATACC+AGG | + | chr3_4:25873484-25873503 | Msa0496000:intron | 35.0% | |
| AATGGTTGCAAAAATCGCAG+AGG | + | chr3_4:25869992-25870011 | Msa0496000:CDS | 40.0% | |
| ATGTCTTAAGACGAAGACTG+AGG | + | chr3_4:25870021-25870040 | Msa0496000:CDS | 40.0% | |
| GTGAAAGAATGAAACACGTG+AGG | - | chr3_4:25870597-25870616 | None:intergenic | 40.0% | |
| AGAACATTGAAGCTAGGGTT+TGG | + | chr3_4:25870737-25870756 | Msa0496000:intron | 40.0% | |
| !! | TTGGCTTGGTAAGAAGATTG+AGG | + | chr3_4:25870756-25870775 | Msa0496000:intron | 40.0% |
| TTGGTAAGAAGATTGAGGCA+AGG | + | chr3_4:25870761-25870780 | Msa0496000:intron | 40.0% | |
| TGGTAAGAAGATTGAGGCAA+GGG | + | chr3_4:25870762-25870781 | Msa0496000:intron | 40.0% | |
| ! | TGCTGTGATGACTCTGTTTT+TGG | + | chr3_4:25870899-25870918 | Msa0496000:intron | 40.0% |
| !! | GCTGTGATGACTCTGTTTTT+GGG | + | chr3_4:25870900-25870919 | Msa0496000:intron | 40.0% |
| ! | ATTTTGTTGCTGCTGCTGTT+TGG | + | chr3_4:25870938-25870957 | Msa0496000:intron | 40.0% |
| ! | AAGCTGTCAGTAAGCTGTTT+TGG | + | chr3_4:25871127-25871146 | Msa0496000:intron | 40.0% |
| !! | AGCTGTCAGTAAGCTGTTTT+GGG | + | chr3_4:25871128-25871147 | Msa0496000:intron | 40.0% |
| CTAGCAAAAGCTGCAAATTG+TGG | + | chr3_4:25871473-25871492 | Msa0496000:intron | 40.0% | |
| GATAAGCTGCTTGCAATTTC+AGG | + | chr3_4:25871495-25871514 | Msa0496000:intron | 40.0% | |
| CAATTTCAGGACTAATGCCA+AGG | + | chr3_4:25871508-25871527 | Msa0496000:intron | 40.0% | |
| ! | TAGTTTAGAACCCACCTTTG+GGG | + | chr3_4:25871541-25871560 | Msa0496000:intron | 40.0% |
| CATAATTGATCCCCAAAGGT+GGG | - | chr3_4:25871554-25871573 | None:intergenic | 40.0% | |
| TCATAATTGATCCCCAAAGG+TGG | - | chr3_4:25871555-25871574 | None:intergenic | 40.0% | |
| GATAGTCATGCTTGCACAAT+CGG | - | chr3_4:25871633-25871652 | None:intergenic | 40.0% | |
| CACATGAGTCTTTATAGCTG+AGG | + | chr3_4:25871820-25871839 | Msa0496000:intron | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ACCACATTATCTCTTCGTTG+TGG | - | chr3_4:25872269-25872288 | None:intergenic | 40.0% | |
| ATGGGCATTCTACTAATCGT+TGG | + | chr3_4:25872846-25872865 | Msa0496000:intron | 40.0% | |
| TATGCATAACTGAGCGATCA+GGG | - | chr3_4:25873101-25873120 | None:intergenic | 40.0% | |
| TTATGCATAACTGAGCGATC+AGG | - | chr3_4:25873102-25873121 | None:intergenic | 40.0% | |
| TTCCATCTATCCTAGGTTGT+AGG | - | chr3_4:25873193-25873212 | None:intergenic | 40.0% | |
| GATGAAAAAGCAGACATAGC+TGG | + | chr3_4:25873294-25873313 | Msa0496000:intron | 40.0% | |
| CCATTGACGTGTACTTTACA+TGG | - | chr3_4:25873321-25873340 | None:intergenic | 40.0% | |
| CCATGTAAAGTACACGTCAA+TGG | + | chr3_4:25873318-25873337 | Msa0496000:intron | 40.0% | |
| TGTAAAGTACACGTCAATGG+AGG | + | chr3_4:25873321-25873340 | Msa0496000:intron | 40.0% | |
| TACACGTCAATGGAGGTAAT+AGG | + | chr3_4:25873328-25873347 | Msa0496000:intron | 40.0% | |
| ACACACATGCTAGATATCCT+AGG | + | chr3_4:25873425-25873444 | Msa0496000:intron | 40.0% | |
| CACACATGCTAGATATCCTA+GGG | + | chr3_4:25873426-25873445 | Msa0496000:intron | 40.0% | |
| ACACATGCTAGATATCCTAG+GGG | + | chr3_4:25873427-25873446 | Msa0496000:intron | 40.0% | |
| TATCCTAGGGGAATTCTAGT+AGG | + | chr3_4:25873439-25873458 | Msa0496000:intron | 40.0% | |
| ATCCTAGGGGAATTCTAGTA+GGG | + | chr3_4:25873440-25873459 | Msa0496000:intron | 40.0% | |
| ! | ACCAGGATCTGAAATGATTC+CGG | + | chr3_4:25873501-25873520 | Msa0496000:intron | 40.0% |
| TGAAATGATTCCGGAGAAGA+TGG | + | chr3_4:25873510-25873529 | Msa0496000:intron | 40.0% | |
| GAGAGAATCTGACAGATTCA+TGG | + | chr3_4:25873629-25873648 | Msa0496000:CDS | 40.0% | |
| TCTTAAGACGAAGACTGAGG+CGG | + | chr3_4:25870024-25870043 | Msa0496000:CDS | 45.0% | |
| AATGAAACACGTGAGGGATG+AGG | - | chr3_4:25870590-25870609 | None:intergenic | 45.0% | |
| TTGAGCATTAGAGGCAAGCT+TGG | + | chr3_4:25870704-25870723 | Msa0496000:intron | 45.0% | |
| TGAGCATTAGAGGCAAGCTT+GGG | + | chr3_4:25870705-25870724 | Msa0496000:intron | 45.0% | |
| ATTGAAGCTAGGGTTTGGCT+TGG | + | chr3_4:25870742-25870761 | Msa0496000:intron | 45.0% | |
| GGATTAACCGGCTGTATAAG+TGG | + | chr3_4:25871177-25871196 | Msa0496000:intron | 45.0% | |
| CCATGAACCACTTATACAGC+CGG | - | chr3_4:25871187-25871206 | None:intergenic | 45.0% | |
| CGGCTGTATAAGTGGTTCAT+GGG | + | chr3_4:25871185-25871204 | Msa0496000:intron | 45.0% | |
| GGCTGTATAAGTGGTTCATG+GGG | + | chr3_4:25871186-25871205 | Msa0496000:intron | 45.0% | |
| ATGGGGCTGAGTATGTATGT+TGG | + | chr3_4:25871203-25871222 | Msa0496000:intron | 45.0% | |
| ATAGCCAAACGACGTAGTTC+TGG | + | chr3_4:25871306-25871325 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| TATCTCTTCGTTGTGGCGAA+CGG | - | chr3_4:25872262-25872281 | None:intergenic | 45.0% | |
| GCCACAACGAAGAGATAATG+TGG | + | chr3_4:25872265-25872284 | Msa0496000:intron | 45.0% | |
| CTAGTTTCGGCTAACTAAGC+CGG | - | chr3_4:25872898-25872917 | None:intergenic | 45.0% | |
| ATGCATAACTGAGCGATCAG+GGG | - | chr3_4:25873100-25873119 | None:intergenic | 45.0% | |
| GGGTTGAGGTTAGAAACAGA+TGG | + | chr3_4:25873144-25873163 | Msa0496000:intron | 45.0% | |
| TAGAAACAGATGGCGATCCT+AGG | + | chr3_4:25873154-25873173 | Msa0496000:intron | 45.0% | |
| TGCCTACAACCTAGGATAGA+TGG | + | chr3_4:25873188-25873207 | Msa0496000:intron | 45.0% | |
| CAGTGAGTTCCATCTATCCT+AGG | - | chr3_4:25873200-25873219 | None:intergenic | 45.0% | |
| CACGAGCCATCCTTATTGTA+TGG | - | chr3_4:25873275-25873294 | None:intergenic | 45.0% | |
| TCCTAGGGGAATTCTAGTAG+GGG | + | chr3_4:25873441-25873460 | Msa0496000:intron | 45.0% | |
| TCCGGAATCATTTCAGATCC+TGG | - | chr3_4:25873505-25873524 | None:intergenic | 45.0% | |
| !! | AATTAAAGTTATTAATTTAT+TGG | + | chr3_4:25871894-25871913 | Msa0496000:intron | 5.0% |
| GAGGGATGAGGAAGAGAAGA+GGG | - | chr3_4:25870578-25870597 | None:intergenic | 50.0% | |
| TGAGGGATGAGGAAGAGAAG+AGG | - | chr3_4:25870579-25870598 | None:intergenic | 50.0% | |
| GAGTCATCACAGCATCCCAA+AGG | - | chr3_4:25870893-25870912 | None:intergenic | 50.0% | |
| CCGGCTGTATAAGTGGTTCA+TGG | + | chr3_4:25871184-25871203 | Msa0496000:intron | 50.0% | |
| TGCACCAGAACTACGTCGTT+TGG | - | chr3_4:25871313-25871332 | None:intergenic | 50.0% | |
| !! | AACGACGTAGTTCTGGTGCA+AGG | + | chr3_4:25871313-25871332 | Msa0496000:intron | 50.0% |
| ATCTCTTCGTTGTGGCGAAC+GGG | - | chr3_4:25872261-25872280 | None:intergenic | 50.0% | |
| TAGGCAACCTCGGTAAACCT+AGG | - | chr3_4:25873174-25873193 | None:intergenic | 50.0% | |
| TCCTAGGTTGTAGGCAACCT+CGG | - | chr3_4:25873184-25873203 | None:intergenic | 50.0% | |
| ACCCCTACTAGAATTCCCCT+AGG | - | chr3_4:25873445-25873464 | None:intergenic | 50.0% | |
| TTCCGGAGAAGATGGTTGAG+AGG | + | chr3_4:25873518-25873537 | Msa0496000:intron | 50.0% | |
| TGCCTCTCAACCATCTTCTC+CGG | - | chr3_4:25873523-25873542 | None:intergenic | 50.0% | |
| GGATGAGGAAGAGAAGAGGG+AGG | - | chr3_4:25870575-25870594 | None:intergenic | 55.0% | |
| TGGCGATCCTAGGTTTACCG+AGG | + | chr3_4:25873164-25873183 | Msa0496000:intron | 55.0% | |
| ACCGAGGTTGCCTACAACCT+AGG | + | chr3_4:25873180-25873199 | Msa0496000:intron | 55.0% | |
| GAAGATGGTTGAGAGGCAGC+TGG | + | chr3_4:25873525-25873544 | Msa0496000:intron | 55.0% | |
| AGAGGCAGCTGGTGAAGCAA+GGG | + | chr3_4:25873536-25873555 | Msa0496000:intron | 55.0% | |
| GAGAGGCAGCTGGTGAAGCA+AGG | + | chr3_4:25873535-25873554 | Msa0496000:intron | 60.0% | |
| GAGGCAGCTGGTGAAGCAAG+GGG | + | chr3_4:25873537-25873556 | Msa0496000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 25869948 | 25873693 | 25869948 | ID=Msa0496000;Name=Msa0496000 |
| chr3_4 | mRNA | 25869948 | 25873693 | 25869948 | ID=Msa0496000-mRNA-1;Parent=Msa0496000;Name=Msa0496000-mRNA-1;_AED=0.38;_eAED=0.49;_QI=0|0|0|0.66|0|0.33|3|0|118 |
| chr3_4 | exon | 25869948 | 25869953 | 25869948 | ID=Msa0496000-mRNA-1:exon:6236;Parent=Msa0496000-mRNA-1 |
| chr3_4 | exon | 25869978 | 25870178 | 25869978 | ID=Msa0496000-mRNA-1:exon:6237;Parent=Msa0496000-mRNA-1 |
| chr3_4 | exon | 25873544 | 25873693 | 25873544 | ID=Msa0496000-mRNA-1:exon:6238;Parent=Msa0496000-mRNA-1 |
| chr3_4 | CDS | 25869948 | 25869953 | 25869948 | ID=Msa0496000-mRNA-1:cds;Parent=Msa0496000-mRNA-1 |
| chr3_4 | CDS | 25869978 | 25870178 | 25869978 | ID=Msa0496000-mRNA-1:cds;Parent=Msa0496000-mRNA-1 |
| chr3_4 | CDS | 25873544 | 25873693 | 25873544 | ID=Msa0496000-mRNA-1:cds;Parent=Msa0496000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
