AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0499410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499410 MtrunA17_Chr1g0156191 72.973 74 20 0 1 74 24 97 1.75e-35 116
Msa0499410 MtrunA17_Chr6g0462511 65.333 75 25 1 1 74 1 75 3.35e-30 102
Msa0499410 MtrunA17_Chr6g0473661 58.904 73 30 0 2 74 353 425 4.00e-30 110
Msa0499410 MtrunA17_Chr6g0473921 56.250 64 28 0 11 74 1 64 1.88e-21 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 244 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAATATGGTGACTTTATT+TGG -0.009467 3_4:+37928583 Msa0499410:five_prime_UTR
AGCTCATTGCATGCTATTTC+TGG 0.084782 3_4:+37927907 Msa0499410:five_prime_UTR
AGCTCATTGCATGCTATTTC+TGG 0.092217 3_4:-37927752 None:intergenic
CGATCCAACTTTGATATTAT+TGG 0.113170 3_4:-37931822 None:intergenic
CATCAAGGCCTCAAAGAAAT+TGG 0.115736 3_4:+37928172 Msa0499410:five_prime_UTR
AATCGGATGCAAACTGATTT+TGG 0.125062 3_4:+37928535 Msa0499410:five_prime_UTR
TGCCCAAGTTTGACAATAAA+TGG 0.184676 3_4:+37927806 Msa0499410:five_prime_UTR
GCAACAAACGTGAATGAATT+AGG 0.195428 3_4:+37927199 Msa0499410:five_prime_UTR
TATGAATATATGTTTGGTTT+TGG 0.240439 3_4:+37931585 Msa0499410:five_prime_UTR
ACCTCTACCTCATTATTTCT+TGG 0.242037 3_4:-37931651 None:intergenic
CTATGAACAATGCTGATTTA+AGG 0.251889 3_4:+37934203 Msa0499410:three_prime_UTR
TGCCTAATGGTGAGGGATTA+AGG 0.257367 3_4:+37928752 Msa0499410:five_prime_UTR
CGTGCGTTACAGCTAGCTTT+AGG 0.262590 3_4:-37932207 None:intergenic
TTCAACGGTCTCAAATCTTT+TGG 0.264016 3_4:-37929026 None:intergenic
GATTATGTCCTGGTGCTTGC+AGG 0.264324 3_4:-37932272 None:intergenic
CCAATATGGTGACTTTATTT+GGG 0.265671 3_4:+37928584 Msa0499410:five_prime_UTR
GTTCCCAAAGTGTTCATTCT+TGG 0.270363 3_4:-37930388 None:intergenic
CATGGAAATTTCGAAGATTC+TGG 0.281014 3_4:+37928819 Msa0499410:five_prime_UTR
CACTGGACTCTCTTCCTAAC+TGG 0.283570 3_4:-37934262 None:intergenic
GATTTCTACAACATTGATAT+TGG 0.285700 3_4:+37931730 Msa0499410:five_prime_UTR
GTGCGTTACAGCTAGCTTTA+GGG 0.286663 3_4:-37932206 None:intergenic
TAGATCAGCAAGGATATATT+TGG 0.290921 3_4:+37933984 Msa0499410:CDS
CATCAAACCTATTTGTTCAT+AGG 0.290954 3_4:-37931770 None:intergenic
ACTCTTACCTATGAACAAAT+AGG 0.305163 3_4:+37931763 Msa0499410:five_prime_UTR
CAAGAACATGTTCGAGGTTA+AGG 0.317039 3_4:+37933540 Msa0499410:five_prime_UTR
TACTCTATTGTTTGTTCAAA+TGG 0.318581 3_4:+37928481 Msa0499410:five_prime_UTR
AAAAGAAATCGTAAAATATT+CGG 0.318803 3_4:-37934495 None:intergenic
ATAGGAGGAAGACATTTATT+AGG 0.322174 3_4:-37933707 None:intergenic
AGATTTGAGACCGTTGAAAA+AGG 0.326177 3_4:+37929031 Msa0499410:five_prime_UTR
CAACCATTTATTGTCAAACT+TGG 0.327256 3_4:-37927809 None:intergenic
CACTCAAGTACTGTCAAACT+TGG 0.344592 3_4:+37927850 Msa0499410:five_prime_UTR
GTAACAAACGTGAATGAATC+AGG 0.345317 3_4:-37928461 None:intergenic
TTGTCACTGATACAAATAGA+TGG 0.346004 3_4:+37931542 Msa0499410:five_prime_UTR
GGAATGGCATTCTTCATATA+AGG 0.346620 3_4:+37934140 Msa0499410:three_prime_UTR
CAGAGGCGTTAGGAAGGATT+TGG 0.349208 3_4:+37931097 Msa0499410:five_prime_UTR
GGATAGGGTTTAATTGGCCT+TGG 0.350161 3_4:+37933602 Msa0499410:five_prime_UTR
GATCAAAGTCGTTGATTACT+TGG 0.353170 3_4:+37932069 Msa0499410:five_prime_UTR
AAAATGGCAAGGTGTACTTC+AGG 0.354841 3_4:+37933572 Msa0499410:five_prime_UTR
CAACAAACGTGAATGAATTA+GGG 0.356907 3_4:+37927200 Msa0499410:five_prime_UTR
ATGCATTATGAATATATGTT+TGG 0.357800 3_4:+37931579 Msa0499410:five_prime_UTR
GAATGGGTGGTTTGGCTTGA+AGG 0.358568 3_4:+37931708 Msa0499410:five_prime_UTR
ACCTCGAACATGTTCTTGTT+AGG 0.359147 3_4:-37933535 None:intergenic
GTTTAATTGGCCTTGGTGCA+TGG 0.359621 3_4:+37933609 Msa0499410:five_prime_UTR
GTGTGATATGGTATTCATTA+TGG 0.361317 3_4:+37934009 Msa0499410:CDS
AAATAATGAGGTAGAGGTTC+AGG 0.361957 3_4:+37931656 Msa0499410:five_prime_UTR
ATGGTTGGATAGGGTTTAAT+TGG 0.364384 3_4:+37933596 Msa0499410:five_prime_UTR
GAGAAATTTCATCTGCTATA+CGG 0.365583 3_4:-37932449 None:intergenic
TTGATCTCAGTTTCCTTAGT+TGG 0.368759 3_4:-37932052 None:intergenic
TGCCTAGATGCTGCTGAGGC+AGG 0.370072 3_4:+37932316 Msa0499410:five_prime_UTR
CAAACAAATTTAAGACATCT+TGG 0.370571 3_4:+37927561 Msa0499410:five_prime_UTR
CAAACAAATTTAAGACATCT+TGG 0.370571 3_4:-37928097 None:intergenic
CCCAAATAAAGTCACCATAT+TGG 0.371908 3_4:-37928584 None:intergenic
TGACATCGACTCTGGATATC+TGG 0.373468 3_4:+37933808 Msa0499410:CDS
TATGTCTTCAACTTTAAGTA+TGG 0.384058 3_4:+37927451 Msa0499410:five_prime_UTR
TATGTCTTCAACTTTAAGTA+TGG 0.384058 3_4:-37928207 None:intergenic
CCTGGTGCTTGCAGGGAATA+GGG 0.384926 3_4:-37932264 None:intergenic
TTCTTCAAGAATGGGTGGTT+TGG 0.386728 3_4:+37931700 Msa0499410:five_prime_UTR
GTTTGGTTATCATGCAGAAT+TGG 0.387820 3_4:+37934400 Msa0499410:three_prime_UTR
GGAGTGATCATCTTTGATAT+AGG 0.388625 3_4:-37933725 None:intergenic
TTCAAAATCGGAGGTGGGTG+GGG 0.397294 3_4:+37932145 Msa0499410:five_prime_UTR
ATCAAGGCCTCAAAGAAATT+GGG 0.399448 3_4:+37928173 Msa0499410:five_prime_UTR
ATATATTTGGCAGTGTGATA+TGG 0.407451 3_4:+37933997 Msa0499410:CDS
GCCACTGCAGGCCTTTGCCT+TGG 0.411177 3_4:+37932005 Msa0499410:intron
AGAAGGTATGTGTCTTCATT+AGG 0.413719 3_4:+37927512 Msa0499410:five_prime_UTR
AGAAGGTATGTGTCTTCATT+AGG 0.413719 3_4:-37928146 None:intergenic
CAACATTGATATTGGTGCTT+GGG 0.414236 3_4:+37931738 Msa0499410:five_prime_UTR
TGTTAGACATCACACCAATA+TGG 0.414754 3_4:+37928570 Msa0499410:five_prime_UTR
AATGTGATGGTCGATCTCTT+TGG 0.415859 3_4:+37928281 Msa0499410:five_prime_UTR
TTTGAAGGATTGGAGGTGAC+TGG 0.416212 3_4:+37934047 Msa0499410:exon
AATGAATTGGTGTTCAAAAT+CGG 0.418504 3_4:+37932133 Msa0499410:five_prime_UTR
AGAACAGTATTCTTCAAGAA+TGG 0.419767 3_4:+37931691 Msa0499410:five_prime_UTR
ACACAGGTCGTGTCTTGGTT+TGG 0.420195 3_4:+37933914 Msa0499410:intron
TTTATGTCAATGTAGTTCAT+TGG 0.422189 3_4:+37931848 Msa0499410:five_prime_UTR
TCCTGGTGCTTGCAGGGAAT+AGG 0.422432 3_4:-37932265 None:intergenic
TCAAAGAAATTGGGTTTACT+TGG 0.424015 3_4:+37928182 Msa0499410:five_prime_UTR
TTGCTTGGAAGTGCTCATTT+CGG 0.424691 3_4:+37932095 Msa0499410:five_prime_UTR
AAGTAAACCCAATTTCTTTG+AGG 0.431983 3_4:-37928180 None:intergenic
AAGTAAACTCGATTTCTTTG+AGG 0.432221 3_4:+37927478 Msa0499410:five_prime_UTR
TTTAATTGGCCTTGGTGCAT+GGG 0.432661 3_4:+37933610 Msa0499410:five_prime_UTR
TCCTCCAATAATATCAAAGT+TGG 0.433629 3_4:+37931818 Msa0499410:five_prime_UTR
TACTTCAGGGATGGTTGGAT+AGG 0.436595 3_4:+37933586 Msa0499410:five_prime_UTR
CTTATGTGCAGCGCGTAACT+TGG 0.437374 3_4:+37934075 Msa0499410:three_prime_UTR
ATTATTGGAGGAGTGCAGTC+AGG 0.438943 3_4:-37931807 None:intergenic
TTGGTGTGATGTCTAACATT+AGG 0.439587 3_4:-37928565 None:intergenic
GTCGATCTCTTTGGAAAGGC+TGG 0.442263 3_4:+37928290 Msa0499410:five_prime_UTR
CTCCTTAATCCCTCACCATT+AGG 0.442519 3_4:-37928754 None:intergenic
TGCACACAACGGTATGTTTG+AGG 0.443354 3_4:-37927264 None:intergenic
TGCACACAACGGTATGTTTG+AGG 0.443354 3_4:+37928394 Msa0499410:five_prime_UTR
ACTTCTCGCAGTGCCCAGTT+AGG 0.447865 3_4:+37934248 Msa0499410:three_prime_UTR
ATCACCATGCTGCCATCATT+TGG 0.451917 3_4:-37933746 None:intergenic
TCAGAGTGCATTGCCAACTA+AGG 0.455280 3_4:+37932039 Msa0499410:five_prime_UTR
TTGAGGCCTTGATGAAAAGA+AGG 0.459610 3_4:+37927495 Msa0499410:five_prime_UTR
TTGAGGCCTTGATGAAAAGA+AGG 0.459610 3_4:-37928163 None:intergenic
TCAAAGAAATCGAGTTTACT+TGG 0.459902 3_4:-37927476 None:intergenic
GCCTAGATGCTGCTGAGGCA+GGG 0.460290 3_4:+37932317 Msa0499410:five_prime_UTR
TGAAACCAAATAAAATTACT+TGG 0.461663 3_4:+37928662 Msa0499410:five_prime_UTR
GATAGCTGAATCACATTTGT+GGG 0.464015 3_4:-37933956 None:intergenic
ATGTATAATTAAAGAGCAAA+TGG 0.464309 3_4:+37934623 Msa0499410:three_prime_UTR
TGCAGGCCTTTGCCTTGGTT+AGG 0.464944 3_4:+37932010 Msa0499410:intron
GAACAGTATTCTTCAAGAAT+GGG 0.467715 3_4:+37931692 Msa0499410:five_prime_UTR
AATGTGATGGTGGATCTCTT+TGG 0.470527 3_4:-37927377 None:intergenic
TAGACAGTTCTAGCACTAGA+AGG 0.472435 3_4:+37927629 Msa0499410:five_prime_UTR
ACAACATTGATATTGGTGCT+TGG 0.474591 3_4:+37931737 Msa0499410:five_prime_UTR
TTGATTACTTGGGATTTGCT+TGG 0.481601 3_4:+37932080 Msa0499410:five_prime_UTR
AGACAGATCATGAGTGGAAG+TGG 0.483854 3_4:+37933679 Msa0499410:five_prime_UTR
CTGGGCACTGCGAGAAGTAA+TGG 0.484915 3_4:-37934243 None:intergenic
AATGTTGGACGCTTCTTCAA+AGG 0.486743 3_4:-37927157 None:intergenic
GATCTCAAGCTCCACGTAGT+AGG 0.487112 3_4:-37932496 None:intergenic
ACTTCAGGGATGGTTGGATA+GGG 0.487995 3_4:+37933587 Msa0499410:five_prime_UTR
CAGAATCTTCGAAATTTCCA+TGG 0.491616 3_4:-37928818 None:intergenic
TAAACAGTTCTAGCACTAGA+AGG 0.491694 3_4:-37928029 None:intergenic
TGATTTAAGGCATGTGTACC+AGG 0.493796 3_4:+37934216 Msa0499410:three_prime_UTR
CTTAAACACAGGTCGTGTCT+TGG 0.494570 3_4:+37933909 Msa0499410:intron
AGGGAATAGGGACATGCCTC+AGG 0.494745 3_4:-37932252 None:intergenic
AACCATTTATTGTCAAACTT+GGG 0.496914 3_4:-37927808 None:intergenic
GAAGCTGTTTCGCGAAGCAT+TGG 0.497137 3_4:+37927115 Msa0499410:five_prime_UTR
CCCTATTCCCTGCAAGCACC+AGG 0.497957 3_4:+37932264 Msa0499410:five_prime_UTR
GTTCAAAATCGGAGGTGGGT+GGG 0.498607 3_4:+37932144 Msa0499410:five_prime_UTR
GCAAACACTAAATTGCCTAA+TGG 0.498664 3_4:+37928739 Msa0499410:five_prime_UTR
TCCAACTTTGATATTATTGG+AGG 0.498883 3_4:-37931819 None:intergenic
CCATGGGCTTGATTATGTCC+TGG 0.501232 3_4:-37932282 None:intergenic
CACATTATTGCAAAGCCCAC+TGG 0.502855 3_4:-37934279 None:intergenic
CATAAGGTTTGATTCTACAT+AGG 0.503823 3_4:-37933642 None:intergenic
GAGCCAAGAATGAACACTTT+GGG 0.504993 3_4:+37930385 Msa0499410:intron
AGAGCCAAGAATGAACACTT+TGG 0.505329 3_4:+37930384 Msa0499410:intron
ACATCTTCTGACATCGACTC+TGG 0.507031 3_4:+37933800 Msa0499410:CDS
TTGTTCGCTTGTTCAAATGT+TGG 0.507079 3_4:-37927172 None:intergenic
TGTCGAGGCAGAAAATGAAT+TGG 0.513746 3_4:+37932120 Msa0499410:five_prime_UTR
GGCCTCCTTCCTTTCATCCG+TGG 0.514138 3_4:-37929005 None:intergenic
GGGAGATTGACAGAGGCGTT+AGG 0.515400 3_4:+37931087 Msa0499410:five_prime_UTR
GATTCTGGACAGACCAGAGC+TGG 0.516761 3_4:+37928834 Msa0499410:five_prime_UTR
ATATCGCACCAGCAGCTTCA+CGG 0.517086 3_4:-37930431 None:intergenic
ACTGCATCTGATGTTAACTC+TGG 0.517762 3_4:+37931900 Msa0499410:five_prime_UTR
AAGATGATCACTCCAAATGA+TGG 0.517981 3_4:+37933734 Msa0499410:exon
GAAACCAAATAAAATTACTT+GGG 0.518117 3_4:+37928663 Msa0499410:five_prime_UTR
ACCCTGCCTCAGCAGCATCT+AGG 0.519643 3_4:-37932318 None:intergenic
ATCAAAGTCGTTGATTACTT+GGG 0.521003 3_4:+37932070 Msa0499410:five_prime_UTR
TACCACACTAGTTCCAGCTC+TGG 0.523565 3_4:-37928847 None:intergenic
TTACAGCTAGCTTTAGGGGA+TGG 0.523709 3_4:-37932201 None:intergenic
CACTAAATTGCCTAATGGTG+AGG 0.524531 3_4:+37928744 Msa0499410:five_prime_UTR
ATTATGTCCTGGTGCTTGCA+GGG 0.524628 3_4:-37932271 None:intergenic
CCTTTATGAATGCACTGAAA+AGG 0.524954 3_4:-37934169 None:intergenic
GACAATAAATGGTTGAACCT+TGG 0.525366 3_4:+37927817 Msa0499410:five_prime_UTR
GTTGCTTTCGTGTGTTGACA+TGG 0.526458 3_4:+37928690 Msa0499410:five_prime_UTR
GGCATGAACTGACCATCACT+CGG 0.526907 3_4:-37928984 None:intergenic
AGATAGCTGAATCACATTTG+TGG 0.527393 3_4:-37933957 None:intergenic
AATGGTGGATGCTTCTTCGA+AGG 0.527573 3_4:+37928499 Msa0499410:five_prime_UTR
CAATATGGTGACTTTATTTG+GGG 0.531394 3_4:+37928585 Msa0499410:five_prime_UTR
TAATGTATGTTTGTGTGTCA+TGG 0.533597 3_4:+37934424 Msa0499410:three_prime_UTR
CAGTTCATGCCACGGATGAA+AGG 0.533808 3_4:+37928996 Msa0499410:five_prime_UTR
GATCTCTTTGCAAGGCGCGT+AGG 0.536164 3_4:+37932167 Msa0499410:five_prime_UTR
CAAGTTTGACAGTACTTGAG+TGG 0.538206 3_4:-37927849 None:intergenic
GAGCTCAATGAGTCAAAGAC+AGG 0.538740 3_4:+37927770 Msa0499410:five_prime_UTR
CTAGCGACTGTAACAGTGCA+TGG 0.540147 3_4:-37927349 None:intergenic
TCCAAGAAATAATGAGGTAG+AGG 0.546351 3_4:+37931650 Msa0499410:five_prime_UTR
TAGATCTGAAGGCTTGTCAT+TGG 0.547841 3_4:-37928252 None:intergenic
TCTATTGTTTGTTCAAATGG+TGG 0.550094 3_4:+37928484 Msa0499410:five_prime_UTR
TAAAAGATTGAATAAGATGA+CGG 0.550132 3_4:-37934542 None:intergenic
AAATGGCAAGGTGTACTTCA+GGG 0.550577 3_4:+37933573 Msa0499410:five_prime_UTR
TCAGTGACAAAGTAAGTAGC+AGG 0.550842 3_4:-37931529 None:intergenic
CAGTTCAAGGCAATGCTGGT+GGG 0.551373 3_4:+37931066 Msa0499410:intron
TCAACAGTTCAAGGCAATGC+TGG 0.551498 3_4:+37931062 Msa0499410:intron
ACTGGACTCTCTTCCTAACT+GGG 0.553386 3_4:-37934261 None:intergenic
AGTTCAAGGCAATGCTGGTG+GGG 0.555031 3_4:+37931067 Msa0499410:intron
GCAATCCTTTCCCCGAGTGA+TGG 0.556379 3_4:+37928972 Msa0499410:five_prime_UTR
GAGCTCAAAGAGTCAAAGAC+AGG 0.558436 3_4:-37927889 None:intergenic
GATGTAGATTAATGATCACT+TGG 0.558713 3_4:+37931505 Msa0499410:intron
CAGTATTCTTCAAGAATGGG+TGG 0.563258 3_4:+37931695 Msa0499410:five_prime_UTR
ACTAAATTGCCTAATGGTGA+GGG 0.565960 3_4:+37928745 Msa0499410:five_prime_UTR
TGTCACTGATACAAATAGAT+GGG 0.566640 3_4:+37931543 Msa0499410:five_prime_UTR
ACAGTTCAAGGCAATGCTGG+TGG 0.568317 3_4:+37931065 Msa0499410:intron
GTCAAGGACCGTGAAGCTGC+TGG 0.569242 3_4:+37930423 Msa0499410:five_prime_UTR
AGGTGTACTTCAGGGATGGT+TGG 0.569785 3_4:+37933581 Msa0499410:five_prime_UTR
CACAGAACAAGATTCAGCCA+TGG 0.569963 3_4:+37927078 Msa0499410:five_prime_UTR
TTGCTGTCACCGAAAATACA+AGG 0.570074 3_4:+37934119 Msa0499410:three_prime_UTR
TGCGTTACAGCTAGCTTTAG+GGG 0.570487 3_4:-37932205 None:intergenic
GATTGACAGAGGCGTTAGGA+AGG 0.571222 3_4:+37931091 Msa0499410:five_prime_UTR
TGTTCAAAATCGGAGGTGGG+TGG 0.571285 3_4:+37932143 Msa0499410:five_prime_UTR
GTGTGGAACTCGACGATGAA+TGG 0.571960 3_4:+37928053 Msa0499410:five_prime_UTR
GTGATCATCTTTGATATAGG+AGG 0.572297 3_4:-37933722 None:intergenic
TCCTAACAAGAACATGTTCG+AGG 0.576589 3_4:+37933534 Msa0499410:five_prime_UTR
GATTGCGCAACATATATCGC+AGG 0.585465 3_4:+37928776 Msa0499410:five_prime_UTR
TCATGCCACGGATGAAAGGA+AGG 0.587608 3_4:+37929000 Msa0499410:five_prime_UTR
ACTGACCATCACTCGGGGAA+AGG 0.587693 3_4:-37928977 None:intergenic
TCAAAGAGTCAAAGACAGGT+TGG 0.591134 3_4:-37927885 None:intergenic
TAACAAACGTGAATGAATCA+GGG 0.593003 3_4:-37928460 None:intergenic
TTGGTGTTCAAAATCGGAGG+TGG 0.594982 3_4:+37932139 Msa0499410:five_prime_UTR
GTCACCGAAAATACAAGGAA+TGG 0.598252 3_4:+37934124 Msa0499410:three_prime_UTR
GCATGAACTGACCATCACTC+GGG 0.599634 3_4:-37928983 None:intergenic
ATGTGATCCAAGAAATAATG+AGG 0.600386 3_4:+37931644 Msa0499410:five_prime_UTR
CATAAAAGACAGATCATGAG+TGG 0.604443 3_4:+37933673 Msa0499410:five_prime_UTR
GAACTTTACTATGTGTGTCA+AGG 0.604975 3_4:+37930407 Msa0499410:five_prime_UTR
TTATTGGAGGAGTGCAGTCA+GGG 0.605677 3_4:-37931806 None:intergenic
GGCAAGGTGTACTTCAGGGA+TGG 0.605709 3_4:+37933577 Msa0499410:five_prime_UTR
TTCATTCTGCATCAAAACCA+TGG 0.605765 3_4:-37927095 None:intergenic
TCAATGAGTCAAAGACAGGT+TGG 0.606266 3_4:+37927774 Msa0499410:five_prime_UTR
CCAGGACATAATCAAGCCCA+TGG 0.607425 3_4:+37932282 Msa0499410:five_prime_UTR
TGGGTGGGGATCTCTTTGCA+AGG 0.608753 3_4:+37932159 Msa0499410:five_prime_UTR
TATAATTAAAGAGCAAATGG+TGG 0.609006 3_4:+37934626 Msa0499410:three_prime_UTR
ATGAACAAATAGGTTTGATG+AGG 0.613403 3_4:+37931773 Msa0499410:five_prime_UTR
CACTCCAAATGATGGCAGCA+TGG 0.614842 3_4:+37933742 Msa0499410:CDS
GCGAGAAGTAATGGTTAACC+TGG 0.615011 3_4:-37934234 None:intergenic
TAGCGACTGTAACAGTGCAT+GGG 0.618955 3_4:-37927348 None:intergenic
ATAATATCAAAGTTGGATCG+TGG 0.620698 3_4:+37931825 Msa0499410:five_prime_UTR
AGTTAGGAAGAGAGTCCAGT+GGG 0.621104 3_4:+37934264 Msa0499410:three_prime_UTR
AGTTTGCCTAGATGCTGCTG+AGG 0.622272 3_4:+37932312 Msa0499410:five_prime_UTR
GCAGCGCGTAACTTGGTCAA+AGG 0.623770 3_4:+37934082 Msa0499410:three_prime_UTR
TATGTCGTACTCCATGTGAA+AGG 0.628216 3_4:-37931132 None:intergenic
TGGTGTTCAAAATCGGAGGT+GGG 0.630322 3_4:+37932140 Msa0499410:five_prime_UTR
GATGGTCGATCTCTTTGGAA+AGG 0.633425 3_4:+37928286 Msa0499410:five_prime_UTR
GTGCTCATTTCGGATTGTCG+AGG 0.634872 3_4:+37932105 Msa0499410:five_prime_UTR
TAACTTTCGAACCTTTCACA+TGG 0.635597 3_4:+37931121 Msa0499410:five_prime_UTR
AATATGGTGACTTTATTTGG+GGG 0.635805 3_4:+37928586 Msa0499410:five_prime_UTR
GTGCTAGAACTGTCTATGTG+TGG 0.636362 3_4:-37927622 None:intergenic
AAACCAAATAAAATTACTTG+GGG 0.636802 3_4:+37928664 Msa0499410:five_prime_UTR
AAGAAGCCATATATAAAACA+TGG 0.639660 3_4:-37934368 None:intergenic
CAAAATCCTAACCAAGGCAA+AGG 0.639704 3_4:-37932016 None:intergenic
ATAATGTGTGCTAGAAGACA+TGG 0.641736 3_4:+37934294 Msa0499410:three_prime_UTR
GTGCTAGAACTGTTTATGTG+TGG 0.643394 3_4:+37928036 Msa0499410:five_prime_UTR
GTGATGGTCAGTTCATGCCA+CGG 0.650338 3_4:+37928988 Msa0499410:five_prime_UTR
TAGATCTGAAGGCTTGTCGT+TGG 0.651266 3_4:+37927406 Msa0499410:five_prime_UTR
GAATTGGTGTTCAAAATCGG+AGG 0.651998 3_4:+37932136 Msa0499410:five_prime_UTR
CTCTGACAAAATCCTAACCA+AGG 0.653052 3_4:-37932022 None:intergenic
ACTCAAGTACTGTCAAACTT+GGG 0.654856 3_4:+37927851 Msa0499410:five_prime_UTR
ATGGTTATATCATGTCTCGT+CGG 0.659671 3_4:+37928072 Msa0499410:five_prime_UTR
TTGAGTGGATTGAATCACCA+AGG 0.661468 3_4:-37927834 None:intergenic
GATGGTGGATCTCTTTGGAA+AGG 0.665284 3_4:-37927372 None:intergenic
GGTGCGATATGTTTGATGAA+AGG 0.666358 3_4:+37930444 Msa0499410:five_prime_UTR
AACAAACGTGAATGAATTAG+GGG 0.667122 3_4:+37927201 Msa0499410:five_prime_UTR
CAGTTAGGAAGAGAGTCCAG+TGG 0.670342 3_4:+37934263 Msa0499410:three_prime_UTR
GACCAGAGCTGGAACTAGTG+TGG 0.672391 3_4:+37928845 Msa0499410:five_prime_UTR
AGAACAAAGTTGTCTACCTG+AGG 0.673391 3_4:+37932236 Msa0499410:five_prime_UTR
AACAAACGTGAATGAATCAG+GGG 0.687019 3_4:-37928459 None:intergenic
TAATGCTGACCCATGCACCA+AGG 0.690450 3_4:-37933619 None:intergenic
CATGAACTGACCATCACTCG+GGG 0.698036 3_4:-37928982 None:intergenic
CTATCTATCATAGATCAGCA+AGG 0.700041 3_4:+37933974 Msa0499410:CDS
TGCCACGGATGAAAGGAAGG+AGG 0.706826 3_4:+37929003 Msa0499410:five_prime_UTR
AAAGCTAGCTGTAACGCACG+AGG 0.709573 3_4:+37932210 Msa0499410:five_prime_UTR
GCTGGTGGGGAGATTGACAG+AGG 0.714727 3_4:+37931080 Msa0499410:five_prime_UTR
GTCTTGGTTTGGTTTCTGCG+AGG 0.718724 3_4:+37933925 Msa0499410:CDS
CTATTTCTGGAAGATCACAG+TGG 0.747490 3_4:-37927739 None:intergenic
CTATTTCTGGAAGATCACAG+TGG 0.747490 3_4:+37927920 Msa0499410:five_prime_UTR
AAAGTTGAATACCTACTACG+TGG 0.752448 3_4:+37932485 Msa0499410:five_prime_UTR
TATTCCTTAGCAAAACACGA+CGG 0.776301 3_4:-37933475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATCAAACAATATAAA+AGG - chr3_4:37931940-37931959 None:intergenic 10.0%
!! TTTATGTGCATATTATTATT+AGG - chr3_4:37928923-37928942 None:intergenic 15.0%
!! TTGTTTAATACATTAACATA+TGG + chr3_4:37930837-37930856 Msa0499410:intron 15.0%
!! CAAATAAGAATAAAAACTAA+CGG - chr3_4:37931024-37931043 None:intergenic 15.0%
!!! AAATTTTTTGTTAACATGAA+TGG + chr3_4:37931294-37931313 Msa0499410:intron 15.0%
!!! AATTTTTTGTTAACATGAAT+GGG + chr3_4:37931295-37931314 Msa0499410:intron 15.0%
!! AGAAATCAGTTTATAAATTA+TGG - chr3_4:37932769-37932788 None:intergenic 15.0%
!!! ATAATTTATAAACTGATTTC+TGG + chr3_4:37932768-37932787 Msa0499410:intron 15.0%
!!! ATTTTATAAAAACTAATGTG+CGG + chr3_4:37932963-37932982 Msa0499410:intron 15.0%
!! TAAGAAAATATATATCAGTT+AGG + chr3_4:37933023-37933042 Msa0499410:intron 15.0%
!! TTAAAATCATATCCAAAATA+AGG - chr3_4:37933152-37933171 None:intergenic 15.0%
!!! ATATTTTAGAATCTTGATTA+TGG + chr3_4:37933863-37933882 Msa0499410:intron 15.0%
!! AAAAGAAATCGTAAAATATT+CGG - chr3_4:37934498-37934517 None:intergenic 15.0%
!!! TTACGATTTCTTTTAAATTA+AGG + chr3_4:37934504-37934523 Msa0499410:three_prime_UTR 15.0%
!!! ATACATATTTTTCTCTTTGA+TGG + chr3_4:37927313-37927332 Msa0499410:five_prime_UTR 20.0%
!!! ATACATATTTTTCTCTTTGA+TGG - chr3_4:37927313-37927332 None:intergenic 20.0%
!! TGAAACCAAATAAAATTACT+TGG + chr3_4:37928662-37928681 Msa0499410:five_prime_UTR 20.0%
!! GAAACCAAATAAAATTACTT+GGG + chr3_4:37928663-37928682 Msa0499410:five_prime_UTR 20.0%
!! AAACCAAATAAAATTACTTG+GGG + chr3_4:37928664-37928683 Msa0499410:five_prime_UTR 20.0%
!!! AAATTTTATTCTCAACAGAT+TGG + chr3_4:37928941-37928960 Msa0499410:intron 20.0%
!!! AATTTTATTCTCAACAGATT+GGG + chr3_4:37928942-37928961 Msa0499410:intron 20.0%
!!! TTTTTTCAATTTAAACCCTA+GGG - chr3_4:37929952-37929971 None:intergenic 20.0%
!!! ATTTTTTCAATTTAAACCCT+AGG - chr3_4:37929953-37929972 None:intergenic 20.0%
!! TTAGTGTAATACATGTATAT+TGG + chr3_4:37931333-37931352 Msa0499410:intron 20.0%
!! AAACACATCATAAAAAGAAA+TGG - chr3_4:37931383-37931402 None:intergenic 20.0%
!!! ATTTCTTTTTATGATGTGTT+TGG + chr3_4:37931382-37931401 Msa0499410:intron 20.0%
!! CATTAATCTACATCAAATAT+GGG - chr3_4:37931499-37931518 None:intergenic 20.0%
!! TCATTAATCTACATCAAATA+TGG - chr3_4:37931500-37931519 None:intergenic 20.0%
!! ATGCATTATGAATATATGTT+TGG + chr3_4:37931579-37931598 Msa0499410:five_prime_UTR 20.0%
!!! TATGAATATATGTTTGGTTT+TGG + chr3_4:37931585-37931604 Msa0499410:five_prime_UTR 20.0%
!! AAATAAAATGCAAACTTCTT+TGG - chr3_4:37932586-37932605 None:intergenic 20.0%
!! TTATCCTAAATAAACAAAGT+TGG + chr3_4:37932675-37932694 Msa0499410:intron 20.0%
!! TATCCTAAATAAACAAAGTT+GGG + chr3_4:37932676-37932695 Msa0499410:intron 20.0%
!!! AACTTGCTTATTTTTGAAAT+AGG + chr3_4:37933170-37933189 Msa0499410:intron 20.0%
!!! ATAATTAATTAGTTTCGGAA+TGG - chr3_4:37933317-37933336 None:intergenic 20.0%
!! CCTATGAATATAATATGAAA+CGG - chr3_4:37933840-37933859 None:intergenic 20.0%
!!! CAGATAATACTATATTTTGA+AGG + chr3_4:37934032-37934051 Msa0499410:CDS 20.0%
!!! AATACTATATTTTGAAGGAT+TGG + chr3_4:37934037-37934056 Msa0499410:exon 20.0%
!! TAAAAGATTGAATAAGATGA+CGG - chr3_4:37934545-37934564 None:intergenic 20.0%
!! ATGTATAATTAAAGAGCAAA+TGG + chr3_4:37934623-37934642 Msa0499410:three_prime_UTR 20.0%
! AAGAGAAAAATATGTATTCG+TGG - chr3_4:37928351-37928370 None:intergenic 25.0%
! TATGTCTTCAACTTTAAGTA+TGG + chr3_4:37927451-37927470 Msa0499410:five_prime_UTR 25.0%
!! CAAACAAATTTAAGACATCT+TGG + chr3_4:37927561-37927580 Msa0499410:five_prime_UTR 25.0%
! AACCATTTATTGTCAAACTT+GGG - chr3_4:37927811-37927830 None:intergenic 25.0%
!! CAAACAAATTTAAGACATCT+TGG - chr3_4:37927561-37927580 None:intergenic 25.0%
! TATGTCTTCAACTTTAAGTA+TGG - chr3_4:37927451-37927470 None:intergenic 25.0%
! AAGAGAAAAATATGTATTCG+TGG + chr3_4:37928351-37928370 Msa0499410:five_prime_UTR 25.0%
! TACTCTATTGTTTGTTCAAA+TGG + chr3_4:37928481-37928500 Msa0499410:five_prime_UTR 25.0%
! AACTTCAGTGTTAGATTATA+TGG + chr3_4:37929271-37929290 Msa0499410:intron 25.0%
!!! CTGAACTATTTTCTAAAACT+CGG - chr3_4:37929365-37929384 None:intergenic 25.0%
!! TGCACAAAATCTTTTTACTA+CGG - chr3_4:37929469-37929488 None:intergenic 25.0%
!!! TTAGTTTTAGTTCCAGTATA+GGG - chr3_4:37929645-37929664 None:intergenic 25.0%
!!! ATTAGTTTTAGTTCCAGTAT+AGG - chr3_4:37929646-37929665 None:intergenic 25.0%
! ATACTGGAACTAAAACTAAT+TGG + chr3_4:37929646-37929665 Msa0499410:intron 25.0%
! TACTGGAACTAAAACTAATT+GGG + chr3_4:37929647-37929666 Msa0499410:intron 25.0%
! AAGTCAAATGGAAATCTAAA+TGG - chr3_4:37929729-37929748 None:intergenic 25.0%
!!! ATTTGCTACATTTTCAAATC+TGG - chr3_4:37929813-37929832 None:intergenic 25.0%
! AATGTGATAAATAAACCCTA+GGG - chr3_4:37929888-37929907 None:intergenic 25.0%
! AAATGTGATAAATAAACCCT+AGG - chr3_4:37929889-37929908 None:intergenic 25.0%
! GGTCATATTTGAATTATCAA+TGG - chr3_4:37930535-37930554 None:intergenic 25.0%
!!! TGTACTTTTTATCTCATGAA+AGG + chr3_4:37930605-37930624 Msa0499410:intron 25.0%
!!! AGAAAATTGTTTTGTGAGTT+TGG - chr3_4:37930638-37930657 None:intergenic 25.0%
!! AAAACAATTTTCTGCAACTT+TGG + chr3_4:37930645-37930664 Msa0499410:intron 25.0%
! ACATTAACATATGGACATTA+TGG + chr3_4:37930846-37930865 Msa0499410:intron 25.0%
! GAAATGGATCATACATTAAA+TGG - chr3_4:37931367-37931386 None:intergenic 25.0%
! AATAATGATCACTTTGATGT+AGG + chr3_4:37931445-37931464 Msa0499410:intron 25.0%
!!! ATATATGTTTGGTTTTGGAA+AGG + chr3_4:37931590-37931609 Msa0499410:five_prime_UTR 25.0%
! GATTTCTACAACATTGATAT+TGG + chr3_4:37931730-37931749 Msa0499410:five_prime_UTR 25.0%
! TTTATGTCAATGTAGTTCAT+TGG + chr3_4:37931848-37931867 Msa0499410:five_prime_UTR 25.0%
!! AATGAATTGGTGTTCAAAAT+CGG + chr3_4:37932133-37932152 Msa0499410:five_prime_UTR 25.0%
!! TATGCATTTTCTCAATTGAA+TGG - chr3_4:37932540-37932559 None:intergenic 25.0%
!! ATTCCCAACTTTGTTTATTT+AGG - chr3_4:37932682-37932701 None:intergenic 25.0%
!! ATTTATAAACTGATTTCTGG+AGG + chr3_4:37932771-37932790 Msa0499410:intron 25.0%
!!! TTAAGCTTTAAGTAATAGCA+GGG - chr3_4:37933006-37933025 None:intergenic 25.0%
!!! GAATCTCTGCAATATTTTTA+AGG + chr3_4:37933045-37933064 Msa0499410:intron 25.0%
! TGTACCATGAATAGAAATTA+AGG - chr3_4:37933221-37933240 None:intergenic 25.0%
!! CTCGCATAATTAATTAGTTT+CGG - chr3_4:37933322-37933341 None:intergenic 25.0%
! TTAAGAATGCATCAGTTATA+CGG - chr3_4:37933391-37933410 None:intergenic 25.0%
! ATACATAAAAAACATGTCGT+CGG - chr3_4:37933433-37933452 None:intergenic 25.0%
! TTTATGTATATATCAGCTGA+AGG + chr3_4:37933444-37933463 Msa0499410:intron 25.0%
! CCGTTTCATATTATATTCAT+AGG + chr3_4:37933837-37933856 Msa0499410:intron 25.0%
! AAGAAGCCATATATAAAACA+TGG - chr3_4:37934371-37934390 None:intergenic 25.0%
!! ATTGATGCTAAGTTTTTGTT+TGG + chr3_4:37934456-37934475 Msa0499410:three_prime_UTR 25.0%
CAACAAACGTGAATGAATTA+GGG + chr3_4:37927200-37927219 Msa0499410:five_prime_UTR 30.0%
AACAAACGTGAATGAATTAG+GGG + chr3_4:37927201-37927220 Msa0499410:five_prime_UTR 30.0%
AGATCTATGCAAAAATGTGA+TGG - chr3_4:37928268-37928287 None:intergenic 30.0%
! ACATTTTTGCATAGATCTGA+AGG + chr3_4:37927395-37927414 Msa0499410:five_prime_UTR 30.0%
TCAAAGAAATCGAGTTTACT+TGG - chr3_4:37927479-37927498 None:intergenic 30.0%
AAGTAAACTCGATTTCTTTG+AGG + chr3_4:37927478-37927497 Msa0499410:five_prime_UTR 30.0%
CAACCATTTATTGTCAAACT+TGG - chr3_4:37927812-37927831 None:intergenic 30.0%
AAGTAAACCCAATTTCTTTG+AGG - chr3_4:37928183-37928202 None:intergenic 30.0%
TCAAAGAAATTGGGTTTACT+TGG + chr3_4:37928182-37928201 Msa0499410:five_prime_UTR 30.0%
! ACATTTTTGCATAGATCTGA+AGG - chr3_4:37927395-37927414 None:intergenic 30.0%
AGATCTATGCAAAAATGTGA+TGG + chr3_4:37928268-37928287 Msa0499410:five_prime_UTR 30.0%
TAACAAACGTGAATGAATCA+GGG - chr3_4:37928463-37928482 None:intergenic 30.0%
TCTATTGTTTGTTCAAATGG+TGG + chr3_4:37928484-37928503 Msa0499410:five_prime_UTR 30.0%
!!! AAGGTTTTGAGCTATTCAAT+CGG + chr3_4:37928518-37928537 Msa0499410:five_prime_UTR 30.0%
ACCAATATGGTGACTTTATT+TGG + chr3_4:37928583-37928602 Msa0499410:five_prime_UTR 30.0%
! CCAATATGGTGACTTTATTT+GGG + chr3_4:37928584-37928603 Msa0499410:five_prime_UTR 30.0%
! CAATATGGTGACTTTATTTG+GGG + chr3_4:37928585-37928604 Msa0499410:five_prime_UTR 30.0%
! AATATGGTGACTTTATTTGG+GGG + chr3_4:37928586-37928605 Msa0499410:five_prime_UTR 30.0%
TATCTATCATGAAAAAGCCA+TGG + chr3_4:37928801-37928820 Msa0499410:five_prime_UTR 30.0%
!! CGCTTGATTTTGATAAATTG+TGG + chr3_4:37928893-37928912 Msa0499410:intron 30.0%
TAGTTAACTATACCAACAGA+TGG - chr3_4:37929165-37929184 None:intergenic 30.0%
TTTCACACTCAAACTATTTG+AGG - chr3_4:37929207-37929226 None:intergenic 30.0%
AATGAGTATGATTGTACTTG+AGG + chr3_4:37929505-37929524 Msa0499410:intron 30.0%
!!! AGACAATGTTTTTAGAGACT+CGG - chr3_4:37929570-37929589 None:intergenic 30.0%
!!! TATTGTTGTTTTCCCTATAC+TGG + chr3_4:37929630-37929649 Msa0499410:intron 30.0%
CACTTATGTATCAAGTCAAA+TGG - chr3_4:37929741-37929760 None:intergenic 30.0%
!!! TCACATTTACCCAGTTTTTT+TGG + chr3_4:37929837-37929856 Msa0499410:intron 30.0%
TTACCTTCACCAAAAAAACT+GGG - chr3_4:37929849-37929868 None:intergenic 30.0%
CTATTTAGCTATAAACCCTA+GGG + chr3_4:37929870-37929889 Msa0499410:intron 30.0%
!!! TCACATTTACCCAGTTTTTT+TGG + chr3_4:37929837-37929856 Msa0499410:intron 30.0%
TTACCTTCACCAAAAAAACT+GGG - chr3_4:37929849-37929868 None:intergenic 30.0%
CTATTTAGCTATAAACCCTA+GGG + chr3_4:37929870-37929889 Msa0499410:intron 30.0%
TTTGTCTGTCTATTTAAGTG+AGG + chr3_4:37930310-37930329 Msa0499410:intron 30.0%
CACAGATTTCATGATATAAG+AGG - chr3_4:37930705-37930724 None:intergenic 30.0%
!! CACTTAAGTGTTTCTGATTT+TGG - chr3_4:37930731-37930750 None:intergenic 30.0%
CAAAATCAGAAACACTTAAG+TGG + chr3_4:37930729-37930748 Msa0499410:intron 30.0%
AAGTTTATGATATGTGCTAC+TGG + chr3_4:37931200-37931219 Msa0499410:intron 30.0%
! TTTTTGTTAACATGAATGGG+TGG + chr3_4:37931298-37931317 Msa0499410:intron 30.0%
! TTTTGTTAACATGAATGGGT+GGG + chr3_4:37931299-37931318 Msa0499410:intron 30.0%
GATGTAGATTAATGATCACT+TGG + chr3_4:37931505-37931524 Msa0499410:intron 30.0%
TTGTCACTGATACAAATAGA+TGG + chr3_4:37931542-37931561 Msa0499410:five_prime_UTR 30.0%
TGTCACTGATACAAATAGAT+GGG + chr3_4:37931543-37931562 Msa0499410:five_prime_UTR 30.0%
ATGTGATCCAAGAAATAATG+AGG + chr3_4:37931644-37931663 Msa0499410:five_prime_UTR 30.0%
AGAACAGTATTCTTCAAGAA+TGG + chr3_4:37931691-37931710 Msa0499410:five_prime_UTR 30.0%
GAACAGTATTCTTCAAGAAT+GGG + chr3_4:37931692-37931711 Msa0499410:five_prime_UTR 30.0%
ACTCTTACCTATGAACAAAT+AGG + chr3_4:37931763-37931782 Msa0499410:five_prime_UTR 30.0%
CATCAAACCTATTTGTTCAT+AGG - chr3_4:37931773-37931792 None:intergenic 30.0%
ATGAACAAATAGGTTTGATG+AGG + chr3_4:37931773-37931792 Msa0499410:five_prime_UTR 30.0%
TCCTCCAATAATATCAAAGT+TGG + chr3_4:37931818-37931837 Msa0499410:five_prime_UTR 30.0%
TCCAACTTTGATATTATTGG+AGG - chr3_4:37931822-37931841 None:intergenic 30.0%
CGATCCAACTTTGATATTAT+TGG - chr3_4:37931825-37931844 None:intergenic 30.0%
ATAATATCAAAGTTGGATCG+TGG + chr3_4:37931825-37931844 Msa0499410:five_prime_UTR 30.0%
! TGATGTTAACTCTGGATTTT+TGG + chr3_4:37931908-37931927 Msa0499410:five_prime_UTR 30.0%
! ATCAAAGTCGTTGATTACTT+GGG + chr3_4:37932070-37932089 Msa0499410:five_prime_UTR 30.0%
! AGGCAAACTATTTTATCCAT+GGG - chr3_4:37932301-37932320 None:intergenic 30.0%
! TAGGCAAACTATTTTATCCA+TGG - chr3_4:37932302-37932321 None:intergenic 30.0%
! AACAAAACCAAACACCTTTT+GGG - chr3_4:37932348-37932367 None:intergenic 30.0%
! AAACAAAACCAAACACCTTT+TGG - chr3_4:37932349-37932368 None:intergenic 30.0%
GAGAAATTTCATCTGCTATA+CGG - chr3_4:37932452-37932471 None:intergenic 30.0%
TATAGATGTATAGACAGTAC+TGG + chr3_4:37932639-37932658 Msa0499410:intron 30.0%
! ATGGCAGAATTTAGTTTATC+AGG + chr3_4:37932839-37932858 Msa0499410:intron 30.0%
TATCTTGCCTTGATTCAAAT+TGG + chr3_4:37932907-37932926 Msa0499410:intron 30.0%
GATTACTCCAATTTGAATCA+AGG - chr3_4:37932917-37932936 None:intergenic 30.0%
!! CTTAAGCTTTAAGTAATAGC+AGG - chr3_4:37933007-37933026 None:intergenic 30.0%
!! TGAAACAATTGATAGTGGTT+AGG - chr3_4:37933082-37933101 None:intergenic 30.0%
AAGCTTGAAACAATTGATAG+TGG - chr3_4:37933087-37933106 None:intergenic 30.0%
ATTTCTATTCATGGTACAAG+AGG + chr3_4:37933223-37933242 Msa0499410:intron 30.0%
CGAAACTAATTAATTATGCG+AGG + chr3_4:37933320-37933339 Msa0499410:intron 30.0%
TAAGAATGCATCAGTTATAC+GGG - chr3_4:37933390-37933409 None:intergenic 30.0%
CATAAGGTTTGATTCTACAT+AGG - chr3_4:37933645-37933664 None:intergenic 30.0%
! CTTTTATGGTCATATGCATA+AGG - chr3_4:37933661-37933680 None:intergenic 30.0%
ATAGGAGGAAGACATTTATT+AGG - chr3_4:37933710-37933729 None:intergenic 30.0%
ATTCCTATTCTCTTAAACAC+AGG + chr3_4:37933898-37933917 Msa0499410:intron 30.0%
TAGATCAGCAAGGATATATT+TGG + chr3_4:37933984-37934003 Msa0499410:CDS 30.0%
ATATATTTGGCAGTGTGATA+TGG + chr3_4:37933997-37934016 Msa0499410:CDS 30.0%
GTGTGATATGGTATTCATTA+TGG + chr3_4:37934009-37934028 Msa0499410:CDS 30.0%
!! ACTATATTTTGAAGGATTGG+AGG + chr3_4:37934040-37934059 Msa0499410:exon 30.0%
! AATGCCATTCCTTGTATTTT+CGG - chr3_4:37934131-37934150 None:intergenic 30.0%
!! CTATGAACAATGCTGATTTA+AGG + chr3_4:37934203-37934222 Msa0499410:three_prime_UTR 30.0%
!!! CATGGATTCTGTAGTTTTTT+TGG + chr3_4:37934312-37934331 Msa0499410:three_prime_UTR 30.0%
!!! ATTCTGTAGTTTTTTTGGCT+TGG + chr3_4:37934317-37934336 Msa0499410:three_prime_UTR 30.0%
! TTGCTGCCATGTTTTATATA+TGG + chr3_4:37934362-37934381 Msa0499410:three_prime_UTR 30.0%
TAATGTATGTTTGTGTGTCA+TGG + chr3_4:37934424-37934443 Msa0499410:three_prime_UTR 30.0%
TTCATTCTGCATCAAAACCA+TGG - chr3_4:37927098-37927117 None:intergenic 35.0%
TTGTTCGCTTGTTCAAATGT+TGG - chr3_4:37927175-37927194 None:intergenic 35.0%
GCAACAAACGTGAATGAATT+AGG + chr3_4:37927199-37927218 Msa0499410:five_prime_UTR 35.0%
TCTATGCAAAAATGTGATGG+TGG - chr3_4:37928271-37928290 None:intergenic 35.0%
! CACATACCTTCTTTTCATCA+AGG - chr3_4:37928157-37928176 None:intergenic 35.0%
! AGAAGGTATGTGTCTTCATT+AGG + chr3_4:37927512-37927531 Msa0499410:five_prime_UTR 35.0%
TGCCCAAGTTTGACAATAAA+TGG + chr3_4:37927806-37927825 Msa0499410:five_prime_UTR 35.0%
GACAATAAATGGTTGAACCT+TGG + chr3_4:37927817-37927836 Msa0499410:five_prime_UTR 35.0%
! ACTCAAGTACTGTCAAACTT+GGG + chr3_4:37927851-37927870 Msa0499410:five_prime_UTR 35.0%
! TAAACAGTTCTAGCACTAGA+AGG - chr3_4:37928032-37928051 None:intergenic 35.0%
ATGGTTATATCATGTCTCGT+CGG + chr3_4:37928072-37928091 Msa0499410:five_prime_UTR 35.0%
! AGAAGGTATGTGTCTTCATT+AGG - chr3_4:37927512-37927531 None:intergenic 35.0%
! CACATACCTTCTTTTCATCA+AGG + chr3_4:37928157-37928176 Msa0499410:five_prime_UTR 35.0%
ATCAAGGCCTCAAAGAAATT+GGG + chr3_4:37928173-37928192 Msa0499410:five_prime_UTR 35.0%
AACAAACGTGAATGAATCAG+GGG - chr3_4:37928462-37928481 None:intergenic 35.0%
GTAACAAACGTGAATGAATC+AGG - chr3_4:37928464-37928483 None:intergenic 35.0%
!! AATCGGATGCAAACTGATTT+TGG + chr3_4:37928535-37928554 Msa0499410:five_prime_UTR 35.0%
TTGGTGTGATGTCTAACATT+AGG - chr3_4:37928568-37928587 None:intergenic 35.0%
TGTTAGACATCACACCAATA+TGG + chr3_4:37928570-37928589 Msa0499410:five_prime_UTR 35.0%
CCCAAATAAAGTCACCATAT+TGG - chr3_4:37928587-37928606 None:intergenic 35.0%
! GCTCCCCAAGTAATTTTATT+TGG - chr3_4:37928670-37928689 None:intergenic 35.0%
GCAAACACTAAATTGCCTAA+TGG + chr3_4:37928739-37928758 Msa0499410:five_prime_UTR 35.0%
ACTAAATTGCCTAATGGTGA+GGG + chr3_4:37928745-37928764 Msa0499410:five_prime_UTR 35.0%
CAGAATCTTCGAAATTTCCA+TGG - chr3_4:37928821-37928840 None:intergenic 35.0%
CATGGAAATTTCGAAGATTC+TGG + chr3_4:37928819-37928838 Msa0499410:five_prime_UTR 35.0%
! TTCAACGGTCTCAAATCTTT+TGG - chr3_4:37929029-37929048 None:intergenic 35.0%
! AGATTTGAGACCGTTGAAAA+AGG + chr3_4:37929031-37929050 Msa0499410:five_prime_UTR 35.0%
!!! TAATGCTCCACCTTTTTCAA+CGG - chr3_4:37929044-37929063 None:intergenic 35.0%
TTTCATCCTAAAAACTCCTC+TGG + chr3_4:37929077-37929096 Msa0499410:intron 35.0%
TAGCTCAGATGGTGAATTAA+GGG - chr3_4:37929106-37929125 None:intergenic 35.0%
AGCTACCTACACAGTAATTA+GGG + chr3_4:37929121-37929140 Msa0499410:intron 35.0%
TTTACAATCTGACCATCTGT+TGG + chr3_4:37929150-37929169 Msa0499410:intron 35.0%
! GACTCCCATATATTCGATTT+TGG + chr3_4:37929293-37929312 Msa0499410:intron 35.0%
GACGCCAAAATCGAATATAT+GGG - chr3_4:37929300-37929319 None:intergenic 35.0%
AGACGCCAAAATCGAATATA+TGG - chr3_4:37929301-37929320 None:intergenic 35.0%
CAGTAACATATGGCCAATTA+TGG - chr3_4:37929400-37929419 None:intergenic 35.0%
!! TTTTGGTGTGCTAAATCACT+TGG + chr3_4:37929438-37929457 Msa0499410:intron 35.0%
! TTTGGTGTGCTAAATCACTT+GGG + chr3_4:37929439-37929458 Msa0499410:intron 35.0%
! GAGTCTCTAAAAACATTGTC+TGG + chr3_4:37929569-37929588 Msa0499410:intron 35.0%
! CCTGTTCGTGAATTTTGTAT+TGG - chr3_4:37929688-37929707 None:intergenic 35.0%
CCAATACAAAATTCACGAAC+AGG + chr3_4:37929685-37929704 Msa0499410:intron 35.0%
!!! TTACCCAGTTTTTTTGGTGA+AGG + chr3_4:37929843-37929862 Msa0499410:intron 35.0%
CTTACCTTCACCAAAAAAAC+TGG - chr3_4:37929850-37929869 None:intergenic 35.0%
GCTATTTAGCTATAAACCCT+AGG + chr3_4:37929869-37929888 Msa0499410:intron 35.0%
!!! TTACCCAGTTTTTTTGGTGA+AGG + chr3_4:37929843-37929862 Msa0499410:intron 35.0%
CTTACCTTCACCAAAAAAAC+TGG - chr3_4:37929850-37929869 None:intergenic 35.0%
GCTATTTAGCTATAAACCCT+AGG + chr3_4:37929869-37929888 Msa0499410:intron 35.0%
AATTGTGCACACGTTTCTTA+TGG + chr3_4:37930176-37930195 Msa0499410:intron 35.0%
ATAGCAAACATTATGCCAAG+TGG - chr3_4:37930234-37930253 None:intergenic 35.0%
GAACTTTACTATGTGTGTCA+AGG + chr3_4:37930407-37930426 Msa0499410:five_prime_UTR 35.0%
!! TTTCTGCAACTTTGGTGTTT+AGG + chr3_4:37930653-37930672 Msa0499410:intron 35.0%
AATAGAAGTTGTTGAGCACA+TGG - chr3_4:37930818-37930837 None:intergenic 35.0%
AATCCAAAATGAGAAACACG+AGG + chr3_4:37930968-37930987 Msa0499410:intron 35.0%
! ATACCTCGTGTTTCTCATTT+TGG - chr3_4:37930974-37930993 None:intergenic 35.0%
TAACTTTCGAACCTTTCACA+TGG + chr3_4:37931121-37931140 Msa0499410:five_prime_UTR 35.0%
TGTTTGGTTGACATCATGTT+TGG + chr3_4:37931398-37931417 Msa0499410:intron 35.0%
! CAAATATGGGCTGTTAGTAA+TGG - chr3_4:37931486-37931505 None:intergenic 35.0%
TCCAAGAAATAATGAGGTAG+AGG + chr3_4:37931650-37931669 Msa0499410:five_prime_UTR 35.0%
! ACCTCTACCTCATTATTTCT+TGG - chr3_4:37931654-37931673 None:intergenic 35.0%
AAATAATGAGGTAGAGGTTC+AGG + chr3_4:37931656-37931675 Msa0499410:five_prime_UTR 35.0%
! ACAACATTGATATTGGTGCT+TGG + chr3_4:37931737-37931756 Msa0499410:five_prime_UTR 35.0%
! CAACATTGATATTGGTGCTT+GGG + chr3_4:37931738-37931757 Msa0499410:five_prime_UTR 35.0%
! GATCAAAGTCGTTGATTACT+TGG + chr3_4:37932069-37932088 Msa0499410:five_prime_UTR 35.0%
! TTGATTACTTGGGATTTGCT+TGG + chr3_4:37932080-37932099 Msa0499410:five_prime_UTR 35.0%
! ACAAAACCAAACACCTTTTG+GGG - chr3_4:37932347-37932366 None:intergenic 35.0%
ACAACACACAAAAGAATGAC+AGG - chr3_4:37932372-37932391 None:intergenic 35.0%
AAAGTTGAATACCTACTACG+TGG + chr3_4:37932485-37932504 Msa0499410:five_prime_UTR 35.0%
CGTGTAGCTTATTCTAAGTA+TGG + chr3_4:37932820-37932839 Msa0499410:intron 35.0%
ACTGATATCTAATGAGCAGA+AGG + chr3_4:37932865-37932884 Msa0499410:intron 35.0%
ATAAAAACTAATGTGCGGAG+TGG + chr3_4:37932968-37932987 Msa0499410:intron 35.0%
!! CAATTGATAGTGGTTAGGAT+AGG - chr3_4:37933077-37933096 None:intergenic 35.0%
TTAGTTAATCGTCAAGCAAC+AGG - chr3_4:37933117-37933136 None:intergenic 35.0%
!!! TCATCAGAACTGCCTTATTT+TGG + chr3_4:37933137-37933156 Msa0499410:intron 35.0%
GCAGCCTTAATTTCTATTCA+TGG + chr3_4:37933214-37933233 Msa0499410:intron 35.0%
AGCATATGTCATTCTTCTGT+TGG - chr3_4:37933268-37933287 None:intergenic 35.0%
TATTCCTTAGCAAAACACGA+CGG - chr3_4:37933478-37933497 None:intergenic 35.0%
! TCGTGTTTTGCTAAGGAATA+TGG + chr3_4:37933478-37933497 Msa0499410:five_prime_UTR 35.0%
GTTAAGGTCCACAAGAAAAA+TGG + chr3_4:37933556-37933575 Msa0499410:five_prime_UTR 35.0%
ATGGTTGGATAGGGTTTAAT+TGG + chr3_4:37933596-37933615 Msa0499410:five_prime_UTR 35.0%
! CACTCATGATCTGTCTTTTA+TGG - chr3_4:37933675-37933694 None:intergenic 35.0%
CATAAAAGACAGATCATGAG+TGG + chr3_4:37933673-37933692 Msa0499410:five_prime_UTR 35.0%
GTGATCATCTTTGATATAGG+AGG - chr3_4:37933725-37933744 None:intergenic 35.0%
GGAGTGATCATCTTTGATAT+AGG - chr3_4:37933728-37933747 None:intergenic 35.0%
AAGATGATCACTCCAAATGA+TGG + chr3_4:37933734-37933753 Msa0499410:exon 35.0%
GATAGCTGAATCACATTTGT+GGG - chr3_4:37933959-37933978 None:intergenic 35.0%
AGATAGCTGAATCACATTTG+TGG - chr3_4:37933960-37933979 None:intergenic 35.0%
CTATCTATCATAGATCAGCA+AGG + chr3_4:37933974-37933993 Msa0499410:CDS 35.0%
GGAATGGCATTCTTCATATA+AGG + chr3_4:37934140-37934159 Msa0499410:three_prime_UTR 35.0%
CCTTTATGAATGCACTGAAA+AGG - chr3_4:37934172-37934191 None:intergenic 35.0%
! CCTTTTCAGTGCATTCATAA+AGG + chr3_4:37934169-37934188 Msa0499410:three_prime_UTR 35.0%
ATAATGTGTGCTAGAAGACA+TGG + chr3_4:37934294-37934313 Msa0499410:three_prime_UTR 35.0%
GTTTGGTTATCATGCAGAAT+TGG + chr3_4:37934400-37934419 Msa0499410:three_prime_UTR 35.0%
AATGTTGGACGCTTCTTCAA+AGG - chr3_4:37927160-37927179 None:intergenic 40.0%
!! AATGTGATGGTGGATCTCTT+TGG - chr3_4:37927380-37927399 None:intergenic 40.0%
TTGAGGCCTTGATGAAAAGA+AGG + chr3_4:37927495-37927514 Msa0499410:five_prime_UTR 40.0%
! TAGACAGTTCTAGCACTAGA+AGG + chr3_4:37927629-37927648 Msa0499410:five_prime_UTR 40.0%
!! CTATTTCTGGAAGATCACAG+TGG - chr3_4:37927920-37927939 None:intergenic 40.0%
!! AGCTCATTGCATGCTATTTC+TGG - chr3_4:37927907-37927926 None:intergenic 40.0%
TCAATGAGTCAAAGACAGGT+TGG + chr3_4:37927774-37927793 Msa0499410:five_prime_UTR 40.0%
!! TTGAGTGGATTGAATCACCA+AGG - chr3_4:37927837-37927856 None:intergenic 40.0%
CAAGTTTGACAGTACTTGAG+TGG - chr3_4:37927852-37927871 None:intergenic 40.0%
! CACTCAAGTACTGTCAAACT+TGG + chr3_4:37927850-37927869 Msa0499410:five_prime_UTR 40.0%
TCAAAGAGTCAAAGACAGGT+TGG - chr3_4:37927888-37927907 None:intergenic 40.0%
!! AGCTCATTGCATGCTATTTC+TGG + chr3_4:37927907-37927926 Msa0499410:five_prime_UTR 40.0%
!! CTATTTCTGGAAGATCACAG+TGG + chr3_4:37927920-37927939 Msa0499410:five_prime_UTR 40.0%
GTGCTAGAACTGTTTATGTG+TGG + chr3_4:37928036-37928055 Msa0499410:five_prime_UTR 40.0%
TTGAGGCCTTGATGAAAAGA+AGG - chr3_4:37927495-37927514 None:intergenic 40.0%
CATCAAGGCCTCAAAGAAAT+TGG + chr3_4:37928172-37928191 Msa0499410:five_prime_UTR 40.0%
TAGATCTGAAGGCTTGTCAT+TGG - chr3_4:37928255-37928274 None:intergenic 40.0%
AATGTGATGGTCGATCTCTT+TGG + chr3_4:37928281-37928300 Msa0499410:five_prime_UTR 40.0%
CACTAAATTGCCTAATGGTG+AGG + chr3_4:37928744-37928763 Msa0499410:five_prime_UTR 40.0%
! TTTGAGACCGTTGAAAAAGG+TGG + chr3_4:37929034-37929053 Msa0499410:intron 40.0%
GTAGCTCAGATGGTGAATTA+AGG - chr3_4:37929107-37929126 None:intergenic 40.0%
GAGCTACCTACACAGTAATT+AGG + chr3_4:37929120-37929139 Msa0499410:intron 40.0%
GCTACCTACACAGTAATTAG+GGG + chr3_4:37929122-37929141 Msa0499410:intron 40.0%
CTAACCCCTAATTACTGTGT+AGG - chr3_4:37929129-37929148 None:intergenic 40.0%
!! TATTCGATTTTGGCGTCTAG+TGG + chr3_4:37929303-37929322 Msa0499410:intron 40.0%
!! ATTCGATTTTGGCGTCTAGT+GGG + chr3_4:37929304-37929323 Msa0499410:intron 40.0%
AAAATAGTTCAGTGTGCTGC+TGG + chr3_4:37929373-37929392 Msa0499410:intron 40.0%
CAAAACATTCATCCATGCAG+AGG - chr3_4:37929423-37929442 None:intergenic 40.0%
! CTCTGCATGGATGAATGTTT+TGG + chr3_4:37929421-37929440 Msa0499410:intron 40.0%
TTGGTGTGCTAAATCACTTG+GGG + chr3_4:37929440-37929459 Msa0499410:intron 40.0%
TTGTGCAAGTCTTGCATAGA+AGG + chr3_4:37929482-37929501 Msa0499410:intron 40.0%
TTGCTTGAAGGAAATCTGCA+TGG + chr3_4:37930026-37930045 Msa0499410:intron 40.0%
AATTGTGCACACGTTTCCTA+TGG + chr3_4:37930051-37930070 Msa0499410:intron 40.0%
ATACCATACATTGTGCCAAG+TGG - chr3_4:37930109-37930128 None:intergenic 40.0%
AATGATGCTTGCTTGCTTGA+AGG + chr3_4:37930139-37930158 Msa0499410:intron 40.0%
TTGCTTGAAGGAAATCTGCA+TGG + chr3_4:37930026-37930045 Msa0499410:intron 40.0%
TGCACACGTTTCTTATGGTT+GGG + chr3_4:37930181-37930200 Msa0499410:intron 40.0%
TCTTATGGTTGGGGTAATGA+TGG + chr3_4:37930191-37930210 Msa0499410:intron 40.0%
CAAACATTATGCCAAGTGGA+TGG - chr3_4:37930230-37930249 None:intergenic 40.0%
! GAAATGTGGTTGATGTCTTG+TGG - chr3_4:37930352-37930371 None:intergenic 40.0%
CTGGTAGAAAACACGAAATG+TGG - chr3_4:37930366-37930385 None:intergenic 40.0%
! AAAGTGTTCATTCTTGGCTC+TGG - chr3_4:37930385-37930404 None:intergenic 40.0%
AGAGCCAAGAATGAACACTT+TGG + chr3_4:37930384-37930403 Msa0499410:intron 40.0%
GAGCCAAGAATGAACACTTT+GGG + chr3_4:37930385-37930404 Msa0499410:intron 40.0%
! GTTCCCAAAGTGTTCATTCT+TGG - chr3_4:37930391-37930410 None:intergenic 40.0%
GGTGCGATATGTTTGATGAA+AGG + chr3_4:37930444-37930463 Msa0499410:five_prime_UTR 40.0%
CAGTTGCAGAAAGAGATTCT+CGG - chr3_4:37930556-37930575 None:intergenic 40.0%
AAACTAACGGCGACAATAGA+AGG - chr3_4:37931011-37931030 None:intergenic 40.0%
TATGTCGTACTCCATGTGAA+AGG - chr3_4:37931135-37931154 None:intergenic 40.0%
TCAGTGACAAAGTAAGTAGC+AGG - chr3_4:37931532-37931551 None:intergenic 40.0%
!!! TTTGGTTTTGGAAAGGAGTG+TGG + chr3_4:37931597-37931616 Msa0499410:five_prime_UTR 40.0%
CAGTATTCTTCAAGAATGGG+TGG + chr3_4:37931695-37931714 Msa0499410:five_prime_UTR 40.0%
TTCTTCAAGAATGGGTGGTT+TGG + chr3_4:37931700-37931719 Msa0499410:five_prime_UTR 40.0%
ACTGCATCTGATGTTAACTC+TGG + chr3_4:37931900-37931919 Msa0499410:five_prime_UTR 40.0%
GTTTGTTTATTTGCCACTGC+AGG + chr3_4:37931993-37932012 Msa0499410:intron 40.0%
CAAAATCCTAACCAAGGCAA+AGG - chr3_4:37932019-37932038 None:intergenic 40.0%
CTCTGACAAAATCCTAACCA+AGG - chr3_4:37932025-37932044 None:intergenic 40.0%
!! TTGCTTGGAAGTGCTCATTT+CGG + chr3_4:37932095-37932114 Msa0499410:five_prime_UTR 40.0%
TGTCGAGGCAGAAAATGAAT+TGG + chr3_4:37932120-37932139 Msa0499410:five_prime_UTR 40.0%
! GAATTGGTGTTCAAAATCGG+AGG + chr3_4:37932136-37932155 Msa0499410:five_prime_UTR 40.0%
AGAACAAAGTTGTCTACCTG+AGG + chr3_4:37932236-37932255 Msa0499410:five_prime_UTR 40.0%
! AAAACCAAACACCTTTTGGG+GGG - chr3_4:37932345-37932364 None:intergenic 40.0%
! CAAAACCAAACACCTTTTGG+GGG - chr3_4:37932346-37932365 None:intergenic 40.0%
ATTCGTATTGTCATCGTCTC+AGG + chr3_4:37932417-37932436 Msa0499410:intron 40.0%
TATTGTCATCGTCTCAGGAA+CGG + chr3_4:37932422-37932441 Msa0499410:intron 40.0%
TTTCTTCACAAGTGTCAACC+AGG + chr3_4:37932604-37932623 Msa0499410:intron 40.0%
TTCTTCACAAGTGTCAACCA+GGG + chr3_4:37932605-37932624 Msa0499410:intron 40.0%
CAAGATACACAAAGTCGACT+CGG + chr3_4:37932743-37932762 Msa0499410:intron 40.0%
TCATGGTACAAGAGGCAATT+AGG + chr3_4:37933231-37933250 Msa0499410:intron 40.0%
TCCTAACAAGAACATGTTCG+AGG + chr3_4:37933534-37933553 Msa0499410:five_prime_UTR 40.0%
ACCTCGAACATGTTCTTGTT+AGG - chr3_4:37933538-37933557 None:intergenic 40.0%
CAAGAACATGTTCGAGGTTA+AGG + chr3_4:37933540-37933559 Msa0499410:five_prime_UTR 40.0%
!!! ACACCTTGCCATTTTTCTTG+TGG - chr3_4:37933567-37933586 None:intergenic 40.0%
AAAATGGCAAGGTGTACTTC+AGG + chr3_4:37933572-37933591 Msa0499410:five_prime_UTR 40.0%
AAATGGCAAGGTGTACTTCA+GGG + chr3_4:37933573-37933592 Msa0499410:five_prime_UTR 40.0%
!! TTTAATTGGCCTTGGTGCAT+GGG + chr3_4:37933610-37933629 Msa0499410:five_prime_UTR 40.0%
CGACCTGTGTTTAAGAGAAT+AGG - chr3_4:37933904-37933923 None:intergenic 40.0%
TTGCTGTCACCGAAAATACA+AGG + chr3_4:37934119-37934138 Msa0499410:three_prime_UTR 40.0%
GTCACCGAAAATACAAGGAA+TGG + chr3_4:37934124-37934143 Msa0499410:three_prime_UTR 40.0%
! TGATTTAAGGCATGTGTACC+AGG + chr3_4:37934216-37934235 Msa0499410:three_prime_UTR 40.0%
!!! CTGTAGTTTTTTTGGCTTGG+TGG + chr3_4:37934320-37934339 Msa0499410:three_prime_UTR 40.0%
!!! GGCTTCTTTTGAGTTCAGTT+TGG + chr3_4:37934383-37934402 Msa0499410:three_prime_UTR 40.0%
CACAGAACAAGATTCAGCCA+TGG + chr3_4:37927078-37927097 Msa0499410:five_prime_UTR 45.0%
TGCACACAACGGTATGTTTG+AGG - chr3_4:37928394-37928413 None:intergenic 45.0%
!! CTGACTGCTTTTGCACACAA+CGG - chr3_4:37928383-37928402 None:intergenic 45.0%
TAGCGACTGTAACAGTGCAT+GGG - chr3_4:37927351-37927370 None:intergenic 45.0%
!! GATGGTGGATCTCTTTGGAA+AGG - chr3_4:37927375-37927394 None:intergenic 45.0%
TAGATCTGAAGGCTTGTCGT+TGG + chr3_4:37927406-37927425 Msa0499410:five_prime_UTR 45.0%
GTGCTAGAACTGTCTATGTG+TGG - chr3_4:37927625-37927644 None:intergenic 45.0%
GAGCTCAATGAGTCAAAGAC+AGG + chr3_4:37927770-37927789 Msa0499410:five_prime_UTR 45.0%
GAGCTCAAAGAGTCAAAGAC+AGG - chr3_4:37927892-37927911 None:intergenic 45.0%
! GATGGTCGATCTCTTTGGAA+AGG + chr3_4:37928286-37928305 Msa0499410:five_prime_UTR 45.0%
!! CTGACTGCTTTTGCACACAA+CGG + chr3_4:37928383-37928402 Msa0499410:five_prime_UTR 45.0%
TGCACACAACGGTATGTTTG+AGG + chr3_4:37928394-37928413 Msa0499410:five_prime_UTR 45.0%
!! AATGGTGGATGCTTCTTCGA+AGG + chr3_4:37928499-37928518 Msa0499410:five_prime_UTR 45.0%
! GTTGCTTTCGTGTGTTGACA+TGG + chr3_4:37928690-37928709 Msa0499410:five_prime_UTR 45.0%
TGCCTAATGGTGAGGGATTA+AGG + chr3_4:37928752-37928771 Msa0499410:five_prime_UTR 45.0%
CTCCTTAATCCCTCACCATT+AGG - chr3_4:37928757-37928776 None:intergenic 45.0%
GATTGCGCAACATATATCGC+AGG + chr3_4:37928776-37928795 Msa0499410:five_prime_UTR 45.0%
TACTGTGTAGGTAGCTCAGA+TGG - chr3_4:37929117-37929136 None:intergenic 45.0%
CACATCAGAGATGACACAAG+AGG - chr3_4:37929249-37929268 None:intergenic 45.0%
!! TTCGATTTTGGCGTCTAGTG+GGG + chr3_4:37929305-37929324 Msa0499410:intron 45.0%
CATGCAGAGGCAGTAACATA+TGG - chr3_4:37929410-37929429 None:intergenic 45.0%
CATATGTTACTGCCTCTGCA+TGG + chr3_4:37929408-37929427 Msa0499410:intron 45.0%
GCCATAGCACATGATCTGAA+GGG - chr3_4:37929986-37930005 None:intergenic 45.0%
AGATCATGTGCTATGGCCTT+GGG + chr3_4:37929989-37930008 Msa0499410:intron 45.0%
! TCAGGTTGCTTCTTGCTTGA+AGG + chr3_4:37930014-37930033 Msa0499410:intron 45.0%
TGCACACGTTTCCTATGGTT+GGG + chr3_4:37930056-37930075 Msa0499410:intron 45.0%
TCCTATGGTTGGGGTAATGA+TGG + chr3_4:37930066-37930085 Msa0499410:intron 45.0%
ACCATCATTACCCCAACCAT+AGG - chr3_4:37930070-37930089 None:intergenic 45.0%
GCTGCAAATAACCATCCACT+TGG + chr3_4:37930091-37930110 Msa0499410:intron 45.0%
CATACATTGTGCCAAGTGGA+TGG - chr3_4:37930105-37930124 None:intergenic 45.0%
CATCCACTTGGCACAATGTA+TGG + chr3_4:37930103-37930122 Msa0499410:intron 45.0%
GTGCACACGTTTCTTATGGT+TGG + chr3_4:37930180-37930199 Msa0499410:intron 45.0%
GCACACGTTTCTTATGGTTG+GGG + chr3_4:37930182-37930201 Msa0499410:intron 45.0%
GTTGCAAGTAACCATCCACT+TGG + chr3_4:37930216-37930235 Msa0499410:intron 45.0%
CCTTGAACTGTTGACATGAG+AGG - chr3_4:37931056-37931075 None:intergenic 45.0%
CCTCTCATGTCAACAGTTCA+AGG + chr3_4:37931053-37931072 Msa0499410:intron 45.0%
TCAACAGTTCAAGGCAATGC+TGG + chr3_4:37931062-37931081 Msa0499410:intron 45.0%
! TTATTGGAGGAGTGCAGTCA+GGG - chr3_4:37931809-37931828 None:intergenic 45.0%
! ATTATTGGAGGAGTGCAGTC+AGG - chr3_4:37931810-37931829 None:intergenic 45.0%
TCAGAGTGCATTGCCAACTA+AGG + chr3_4:37932039-37932058 Msa0499410:five_prime_UTR 45.0%
! TTGGTGTTCAAAATCGGAGG+TGG + chr3_4:37932139-37932158 Msa0499410:five_prime_UTR 45.0%
TGGTGTTCAAAATCGGAGGT+GGG + chr3_4:37932140-37932159 Msa0499410:five_prime_UTR 45.0%
!! TTACAGCTAGCTTTAGGGGA+TGG - chr3_4:37932204-37932223 None:intergenic 45.0%
!! TGCGTTACAGCTAGCTTTAG+GGG - chr3_4:37932208-37932227 None:intergenic 45.0%
!! GTGCGTTACAGCTAGCTTTA+GGG - chr3_4:37932209-37932228 None:intergenic 45.0%
ATTATGTCCTGGTGCTTGCA+GGG - chr3_4:37932274-37932293 None:intergenic 45.0%
TCTTCACAAGTGTCAACCAG+GGG + chr3_4:37932606-37932625 Msa0499410:intron 45.0%
TCTATAAGTAACAGTCCCCC+TGG - chr3_4:37932625-37932644 None:intergenic 45.0%
! ACAGTACTGGACACACTAGA+TGG + chr3_4:37932652-37932671 Msa0499410:intron 45.0%
! ATTGCCGTCGTGTTTTGCTA+AGG + chr3_4:37933471-37933490 Msa0499410:five_prime_UTR 45.0%
GGTCCACAAGAAAAATGGCA+AGG + chr3_4:37933561-37933580 Msa0499410:five_prime_UTR 45.0%
TACTTCAGGGATGGTTGGAT+AGG + chr3_4:37933586-37933605 Msa0499410:five_prime_UTR 45.0%
ACTTCAGGGATGGTTGGATA+GGG + chr3_4:37933587-37933606 Msa0499410:five_prime_UTR 45.0%
! GGATAGGGTTTAATTGGCCT+TGG + chr3_4:37933602-37933621 Msa0499410:five_prime_UTR 45.0%
!! GTTTAATTGGCCTTGGTGCA+TGG + chr3_4:37933609-37933628 Msa0499410:five_prime_UTR 45.0%
AGACAGATCATGAGTGGAAG+TGG + chr3_4:37933679-37933698 Msa0499410:five_prime_UTR 45.0%
ATCACCATGCTGCCATCATT+TGG - chr3_4:37933749-37933768 None:intergenic 45.0%
!! ACATCTTCTGACATCGACTC+TGG + chr3_4:37933800-37933819 Msa0499410:CDS 45.0%
!! TGACATCGACTCTGGATATC+TGG + chr3_4:37933808-37933827 Msa0499410:CDS 45.0%
CTTAAACACAGGTCGTGTCT+TGG + chr3_4:37933909-37933928 Msa0499410:intron 45.0%
TTTGAAGGATTGGAGGTGAC+TGG + chr3_4:37934047-37934066 Msa0499410:exon 45.0%
GCGAGAAGTAATGGTTAACC+TGG - chr3_4:37934237-37934256 None:intergenic 45.0%
ACTGGACTCTCTTCCTAACT+GGG - chr3_4:37934264-37934283 None:intergenic 45.0%
AGTTAGGAAGAGAGTCCAGT+GGG + chr3_4:37934264-37934283 Msa0499410:three_prime_UTR 45.0%
CACATTATTGCAAAGCCCAC+TGG - chr3_4:37934282-37934301 None:intergenic 45.0%
! GAAGCTGTTTCGCGAAGCAT+TGG + chr3_4:37927115-37927134 Msa0499410:five_prime_UTR 50.0%
CTAGCGACTGTAACAGTGCA+TGG - chr3_4:37927352-37927371 None:intergenic 50.0%
GTGTGGAACTCGACGATGAA+TGG + chr3_4:37928053-37928072 Msa0499410:five_prime_UTR 50.0%
! GTCGATCTCTTTGGAAAGGC+TGG + chr3_4:37928290-37928309 Msa0499410:five_prime_UTR 50.0%
TACCACACTAGTTCCAGCTC+TGG - chr3_4:37928850-37928869 None:intergenic 50.0%
CATGAACTGACCATCACTCG+GGG - chr3_4:37928985-37929004 None:intergenic 50.0%
GCATGAACTGACCATCACTC+GGG - chr3_4:37928986-37929005 None:intergenic 50.0%
GGCATGAACTGACCATCACT+CGG - chr3_4:37928987-37929006 None:intergenic 50.0%
GTGATGGTCAGTTCATGCCA+CGG + chr3_4:37928988-37929007 Msa0499410:five_prime_UTR 50.0%
CAGTTCATGCCACGGATGAA+AGG + chr3_4:37928996-37929015 Msa0499410:five_prime_UTR 50.0%
TCATGCCACGGATGAAAGGA+AGG + chr3_4:37929000-37929019 Msa0499410:five_prime_UTR 50.0%
! GGGACACCAGAGGAGTTTTT+AGG - chr3_4:37929086-37929105 None:intergenic 50.0%
GGTGAATTAAGGGACACCAG+AGG - chr3_4:37929096-37929115 None:intergenic 50.0%
! GTGTGCTGCTGGTCCATAAT+TGG + chr3_4:37929384-37929403 Msa0499410:intron 50.0%
GCCCTTCAGATCATGTGCTA+TGG + chr3_4:37929982-37930001 Msa0499410:intron 50.0%
GGCCATAGCACATGATCTGA+AGG - chr3_4:37929987-37930006 None:intergenic 50.0%
CAGATCATGTGCTATGGCCT+TGG + chr3_4:37929988-37930007 Msa0499410:intron 50.0%
AAGAAGCAACCTGACTCCCA+AGG - chr3_4:37930008-37930027 None:intergenic 50.0%
GTGCACACGTTTCCTATGGT+TGG + chr3_4:37930055-37930074 Msa0499410:intron 50.0%
GCACACGTTTCCTATGGTTG+GGG + chr3_4:37930057-37930076 Msa0499410:intron 50.0%
ATATCGCACCAGCAGCTTCA+CGG - chr3_4:37930434-37930453 None:intergenic 50.0%
ACAGTTCAAGGCAATGCTGG+TGG + chr3_4:37931065-37931084 Msa0499410:intron 50.0%
CAGTTCAAGGCAATGCTGGT+GGG + chr3_4:37931066-37931085 Msa0499410:intron 50.0%
AGTTCAAGGCAATGCTGGTG+GGG + chr3_4:37931067-37931086 Msa0499410:intron 50.0%
!! GATTGACAGAGGCGTTAGGA+AGG + chr3_4:37931091-37931110 Msa0499410:five_prime_UTR 50.0%
!! CAGAGGCGTTAGGAAGGATT+TGG + chr3_4:37931097-37931116 Msa0499410:five_prime_UTR 50.0%
!! GAATGGGTGGTTTGGCTTGA+AGG + chr3_4:37931708-37931727 Msa0499410:five_prime_UTR 50.0%
GTGCTCATTTCGGATTGTCG+AGG + chr3_4:37932105-37932124 Msa0499410:five_prime_UTR 50.0%
TGTTCAAAATCGGAGGTGGG+TGG + chr3_4:37932143-37932162 Msa0499410:five_prime_UTR 50.0%
GTTCAAAATCGGAGGTGGGT+GGG + chr3_4:37932144-37932163 Msa0499410:five_prime_UTR 50.0%
TTCAAAATCGGAGGTGGGTG+GGG + chr3_4:37932145-37932164 Msa0499410:five_prime_UTR 50.0%
!! CGTGCGTTACAGCTAGCTTT+AGG - chr3_4:37932210-37932229 None:intergenic 50.0%
AAAGCTAGCTGTAACGCACG+AGG + chr3_4:37932210-37932229 Msa0499410:five_prime_UTR 50.0%
GATTATGTCCTGGTGCTTGC+AGG - chr3_4:37932275-37932294 None:intergenic 50.0%
CCATGGGCTTGATTATGTCC+TGG - chr3_4:37932285-37932304 None:intergenic 50.0%
CCAGGACATAATCAAGCCCA+TGG + chr3_4:37932282-37932301 Msa0499410:five_prime_UTR 50.0%
AGTTTGCCTAGATGCTGCTG+AGG + chr3_4:37932312-37932331 Msa0499410:five_prime_UTR 50.0%
GATCTCAAGCTCCACGTAGT+AGG - chr3_4:37932499-37932518 None:intergenic 50.0%
CTTCACAAGTGTCAACCAGG+GGG + chr3_4:37932607-37932626 Msa0499410:intron 50.0%
AGGTGTACTTCAGGGATGGT+TGG + chr3_4:37933581-37933600 Msa0499410:five_prime_UTR 50.0%
TAATGCTGACCCATGCACCA+AGG - chr3_4:37933622-37933641 None:intergenic 50.0%
CACTCCAAATGATGGCAGCA+TGG + chr3_4:37933742-37933761 Msa0499410:CDS 50.0%
ACACAGGTCGTGTCTTGGTT+TGG + chr3_4:37933914-37933933 Msa0499410:intron 50.0%
!! GTCTTGGTTTGGTTTCTGCG+AGG + chr3_4:37933925-37933944 Msa0499410:CDS 50.0%
CTTATGTGCAGCGCGTAACT+TGG + chr3_4:37934075-37934094 Msa0499410:three_prime_UTR 50.0%
CACTGGACTCTCTTCCTAAC+TGG - chr3_4:37934265-37934284 None:intergenic 50.0%
CAGTTAGGAAGAGAGTCCAG+TGG + chr3_4:37934263-37934282 Msa0499410:three_prime_UTR 50.0%
GATTCTGGACAGACCAGAGC+TGG + chr3_4:37928834-37928853 Msa0499410:five_prime_UTR 55.0%
GACCAGAGCTGGAACTAGTG+TGG + chr3_4:37928845-37928864 Msa0499410:five_prime_UTR 55.0%
GCAATCCTTTCCCCGAGTGA+TGG + chr3_4:37928972-37928991 Msa0499410:five_prime_UTR 55.0%
ACTGACCATCACTCGGGGAA+AGG - chr3_4:37928980-37928999 None:intergenic 55.0%
TGCCACGGATGAAAGGAAGG+AGG + chr3_4:37929003-37929022 Msa0499410:five_prime_UTR 55.0%
!! GGGAGATTGACAGAGGCGTT+AGG + chr3_4:37931087-37931106 Msa0499410:five_prime_UTR 55.0%
TGCAGGCCTTTGCCTTGGTT+AGG + chr3_4:37932010-37932029 Msa0499410:intron 55.0%
TGGGTGGGGATCTCTTTGCA+AGG + chr3_4:37932159-37932178 Msa0499410:five_prime_UTR 55.0%
GATCTCTTTGCAAGGCGCGT+AGG + chr3_4:37932167-37932186 Msa0499410:five_prime_UTR 55.0%
AGGGAATAGGGACATGCCTC+AGG - chr3_4:37932255-37932274 None:intergenic 55.0%
CCTGGTGCTTGCAGGGAATA+GGG - chr3_4:37932267-37932286 None:intergenic 55.0%
TCCTGGTGCTTGCAGGGAAT+AGG - chr3_4:37932268-37932287 None:intergenic 55.0%
!! GGTTCCCCCCAAAAGGTGTT+TGG + chr3_4:37932338-37932357 Msa0499410:intron 55.0%
GGCAAGGTGTACTTCAGGGA+TGG + chr3_4:37933577-37933596 Msa0499410:five_prime_UTR 55.0%
GCAGCGCGTAACTTGGTCAA+AGG + chr3_4:37934082-37934101 Msa0499410:three_prime_UTR 55.0%
! CTGGGCACTGCGAGAAGTAA+TGG - chr3_4:37934246-37934265 None:intergenic 55.0%
ACTTCTCGCAGTGCCCAGTT+AGG + chr3_4:37934248-37934267 Msa0499410:three_prime_UTR 55.0%
GGCCTCCTTCCTTTCATCCG+TGG - chr3_4:37929008-37929027 None:intergenic 60.0%
! GTGCTATGGCCTTGGGAGTC+AGG + chr3_4:37929996-37930015 Msa0499410:intron 60.0%
GTCAAGGACCGTGAAGCTGC+TGG + chr3_4:37930423-37930442 Msa0499410:five_prime_UTR 60.0%
GCTGGTGGGGAGATTGACAG+AGG + chr3_4:37931080-37931099 Msa0499410:five_prime_UTR 60.0%
ACCAAGGCAAAGGCCTGCAG+TGG - chr3_4:37932009-37932028 None:intergenic 60.0%
CCCTATTCCCTGCAAGCACC+AGG + chr3_4:37932264-37932283 Msa0499410:five_prime_UTR 60.0%
TGCCTAGATGCTGCTGAGGC+AGG + chr3_4:37932316-37932335 Msa0499410:five_prime_UTR 60.0%
GCCTAGATGCTGCTGAGGCA+GGG + chr3_4:37932317-37932336 Msa0499410:five_prime_UTR 60.0%
ACCCTGCCTCAGCAGCATCT+AGG - chr3_4:37932321-37932340 None:intergenic 60.0%
GCCACTGCAGGCCTTTGCCT+TGG + chr3_4:37932005-37932024 Msa0499410:intron 65.0%
GAGGCAGGGTTCCCCCCAAA+AGG + chr3_4:37932331-37932350 Msa0499410:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 37927068 37934648 37927068 ID=Msa0499410;Name=Msa0499410
chr3_4 mRNA 37927068 37934648 37927068 ID=Msa0499410-mRNA-1;Parent=Msa0499410;Name=Msa0499410-mRNA-1;_AED=0.19;_eAED=0.19;_QI=3184|1|1|1|0.37|0.55|9|597|74
chr3_4 exon 37927068 37928866 37927068 ID=Msa0499410-mRNA-1:exon:7836;Parent=Msa0499410-mRNA-1
chr3_4 exon 37928959 37929052 37928959 ID=Msa0499410-mRNA-1:exon:7837;Parent=Msa0499410-mRNA-1
chr3_4 exon 37930386 37930465 37930386 ID=Msa0499410-mRNA-1:exon:7838;Parent=Msa0499410-mRNA-1
chr3_4 exon 37931069 37931160 37931069 ID=Msa0499410-mRNA-1:exon:7839;Parent=Msa0499410-mRNA-1
chr3_4 exon 37931512 37931929 37931512 ID=Msa0499410-mRNA-1:exon:7840;Parent=Msa0499410-mRNA-1
chr3_4 exon 37932015 37932352 37932015 ID=Msa0499410-mRNA-1:exon:7841;Parent=Msa0499410-mRNA-1
chr3_4 exon 37932439 37932524 37932439 ID=Msa0499410-mRNA-1:exon:7842;Parent=Msa0499410-mRNA-1
chr3_4 exon 37933460 37933829 37933460 ID=Msa0499410-mRNA-1:exon:7843;Parent=Msa0499410-mRNA-1
chr3_4 exon 37933920 37934648 37933920 ID=Msa0499410-mRNA-1:exon:7844;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37927068 37928866 37927068 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37928959 37929052 37928959 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37930386 37930465 37930386 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37931069 37931160 37931069 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37931512 37931929 37931512 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37932015 37932352 37932015 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37932439 37932524 37932439 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 five_prime_UTR 37933460 37933736 37933460 ID=Msa0499410-mRNA-1:five_prime_utr;Parent=Msa0499410-mRNA-1
chr3_4 CDS 37933737 37933829 37933737 ID=Msa0499410-mRNA-1:cds;Parent=Msa0499410-mRNA-1
chr3_4 CDS 37933920 37934051 37933920 ID=Msa0499410-mRNA-1:cds;Parent=Msa0499410-mRNA-1
chr3_4 three_prime_UTR 37934052 37934648 37934052 ID=Msa0499410-mRNA-1:three_prime_utr;Parent=Msa0499410-mRNA-1
Gene Sequence

>Msa0499410

ATGATCACTCCAAATGATGGCAGCATGGTGATGCAGTTTTATCGCACGTTTGTTCATATATTGACATCTTCTGACATCGACTCTGGATATCTGGTCGTGTCTTGGTTTGGTTTCTGCGAGGATGCATTGCCCACAAATGTGATTCAGCTATCTATCATAGATCAGCAAGGATATATTTGGCAGTGTGATATGGTATTCATTATGGCAGATAATACTATATTTTGA
Protein sequence

>Msa0499410

MITPNDGSMVMQFYRTFVHILTSSDIDSGYLVVSWFGFCEDALPTNVIQLSIIDQQGYIWQCDMVFIMADNTIF*